Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013703
(1064 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848458.1| PREDICTED: hypothetical protein XP_843365 isofo... 394 e-109
Alignment gi|XP_856271.1| PREDICTED: hypothetical protein XP_851178 isofo... 372 e-103
Alignment gi|XP_856231.1| PREDICTED: hypothetical protein XP_851138 isofo... 201 1e-51
Alignment gi|XP_534325.2| PREDICTED: hypothetical protein XP_534325 isofo... 201 1e-51
>ref|XP_848458.1| PREDICTED: hypothetical protein XP_843365 isoform 10 [Canis
familiaris].
Length = 684
Score = 394 bits (1011), Expect = e-109
Identities = 216/323 (66%), Positives = 244/323 (75%), Gaps = 3/323 (0%)
Frame = +2
Query: 89 MHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKLYECNPSDICRVKPKYGELK 268
M A PSA S DY++RL LQ+GLRDSEKKRL+LERKLYE N SDICRVK KY +LK
Sbjct: 1 MRPASPPSAPPASSDYHERLGRLQRGLRDSEKKRLDLERKLYEYNQSDICRVKLKYVKLK 60
Query: 269 KYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQLKKMQLLX 448
KYLKEI ESEK+A TRNQ+YLKRFE +QAH+GHFTT E KLQELK EY Q+KKMQLL
Sbjct: 61 KYLKEIRESEKKAHTRNQDYLKRFEHVQAHVGHFTTNTE-KLQELKNEYVAQMKKMQLLS 119
Query: 449 XXXXXXXXXXXG---AKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQK 619
K+ INLGTA SRGLY PATIFMGRQMSA+ S+ F AEQK
Sbjct: 120 KESPEARGEQKDKDRGKVARQVGINLGTAASRGLYHPATIFMGRQMSAMLSIRGFRAEQK 179
Query: 620 SPQPTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPV 799
SPQPTK+ SIPDPHSHRQ A+ DVTDS V Q + DTQ L KSDK DGKTSLQIGEKMPV
Sbjct: 180 SPQPTKSVSIPDPHSHRQPARSGDVTDSCVGQIHSDTQRLKKSDKIDGKTSLQIGEKMPV 239
Query: 800 TASALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSR 979
T SALSEEEQTHCS+IGS G+S LSEG++S L+S L ARLSP+NRTTD+KCD S+R
Sbjct: 240 TGSALSEEEQTHCSQIGSNTHHGESSLSEGKKSAQLHSLLLARLSPENRTTDVKCDSSNR 299
Query: 980 LEGTEAEILTRKHMKFEKKEQTA 1048
EG+E EILTR+H+ E KE+ A
Sbjct: 300 SEGSEGEILTREHI--EVKEERA 320
>ref|XP_856271.1| PREDICTED: hypothetical protein XP_851178 isoform 12 [Canis
familiaris].
Length = 653
Score = 372 bits (956), Expect = e-103
Identities = 207/320 (64%), Positives = 234/320 (73%)
Frame = +2
Query: 89 MHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKLYECNPSDICRVKPKYGELK 268
M A PSA S DY++RL LQ+GLRDSEKKRL+LERKLYE N SDICRVK KY +LK
Sbjct: 1 MRPASPPSAPPASSDYHERLGRLQRGLRDSEKKRLDLERKLYEYNQSDICRVKLKYVKLK 60
Query: 269 KYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQLKKMQLLX 448
KYLKEI ESEK+A TRNQ+YLKRFE +QAH+GHFTT E KLQELKV +
Sbjct: 61 KYLKEIRESEKKAHTRNQDYLKRFEHVQAHVGHFTTNTE-KLQELKVARQVG-------- 111
Query: 449 XXXXXXXXXXXGAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQKSPQ 628
INLGTA SRGLY PATIFMGRQMSA+ S+ F AEQKSPQ
Sbjct: 112 --------------------INLGTAASRGLYHPATIFMGRQMSAMLSIRGFRAEQKSPQ 151
Query: 629 PTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPVTAS 808
PTK+ SIPDPHSHRQ A+ DVTDS V Q + DTQ L KSDK DGKTSLQIGEKMPVT S
Sbjct: 152 PTKSVSIPDPHSHRQPARSGDVTDSCVGQIHSDTQRLKKSDKIDGKTSLQIGEKMPVTGS 211
Query: 809 ALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSRLEG 988
ALSEEEQTHCS+IGS G+S LSEG++S L+S L ARLSP+NRTTD+KCD S+R EG
Sbjct: 212 ALSEEEQTHCSQIGSNTHHGESSLSEGKKSAQLHSLLLARLSPENRTTDVKCDSSNRSEG 271
Query: 989 TEAEILTRKHMKFEKKEQTA 1048
+E EILTR+H+ E KE+ A
Sbjct: 272 SEGEILTREHI--EVKEERA 289
>ref|XP_856231.1| PREDICTED: hypothetical protein XP_851138 isoform 11 [Canis
familiaris].
Length = 572
Score = 201 bits (510), Expect = 1e-51
Identities = 106/153 (69%), Positives = 122/153 (79%)
Frame = +2
Query: 590 SMGDFSAEQKSPQPTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKT 769
S+ F AEQKSPQPTK+ SIPDPHSHRQ A+ DVTDS V Q + DTQ L KSDK DGKT
Sbjct: 3 SIRGFRAEQKSPQPTKSVSIPDPHSHRQPARSGDVTDSCVGQIHSDTQRLKKSDKIDGKT 62
Query: 770 SLQIGEKMPVTASALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRT 949
SLQIGEKMPVT SALSEEEQTHCS+IGS G+S LSEG++S L+S L ARLSP+NRT
Sbjct: 63 SLQIGEKMPVTGSALSEEEQTHCSQIGSNTHHGESSLSEGKKSAQLHSLLLARLSPENRT 122
Query: 950 TDLKCDGSSRLEGTEAEILTRKHMKFEKKEQTA 1048
TD+KCD S+R EG+E EILTR+H+ E KE+ A
Sbjct: 123 TDVKCDSSNRSEGSEGEILTREHI--EVKEERA 153
>ref|XP_534325.2| PREDICTED: hypothetical protein XP_534325 isoform 9 [Canis
familiaris].
Length = 473
Score = 201 bits (510), Expect = 1e-51
Identities = 106/153 (69%), Positives = 122/153 (79%)
Frame = +2
Query: 590 SMGDFSAEQKSPQPTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKT 769
S+ F AEQKSPQPTK+ SIPDPHSHRQ A+ DVTDS V Q + DTQ L KSDK DGKT
Sbjct: 3 SIRGFRAEQKSPQPTKSVSIPDPHSHRQPARSGDVTDSCVGQIHSDTQRLKKSDKIDGKT 62
Query: 770 SLQIGEKMPVTASALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRT 949
SLQIGEKMPVT SALSEEEQTHCS+IGS G+S LSEG++S L+S L ARLSP+NRT
Sbjct: 63 SLQIGEKMPVTGSALSEEEQTHCSQIGSNTHHGESSLSEGKKSAQLHSLLLARLSPENRT 122
Query: 950 TDLKCDGSSRLEGTEAEILTRKHMKFEKKEQTA 1048
TD+KCD S+R EG+E EILTR+H+ E KE+ A
Sbjct: 123 TDVKCDSSNRSEGSEGEILTREHI--EVKEERA 153
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,718,507
Number of extensions: 1079093
Number of successful extensions: 4083
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4069
Number of HSP's successfully gapped: 4
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013703
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013703
(1064 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156930.1| centrosomal protein kizuna [Bos taurus]. 426 e-119
>ref|NP_001156930.1| centrosomal protein kizuna [Bos taurus].
Length = 727
Score = 426 bits (1095), Expect = e-119
Identities = 228/332 (68%), Positives = 263/332 (79%), Gaps = 3/332 (0%)
Frame = +2
Query: 68 RSR*GGGMHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKLYECNPSDICRVK 247
RS GGG A + LPSPDYY+++ HLQQGLR+SEKKRL+LERKLYE + SD+CR K
Sbjct: 4 RSGRGGGTRGA----SALPSPDYYEQVAHLQQGLRNSEKKRLDLERKLYEYHQSDVCRAK 59
Query: 248 PKYGELKKYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQL 427
KY +LKKYLKEICESEK AR RNQEYLK+FE+IQA++ T + KLQELK+E+ETQ+
Sbjct: 60 LKYIKLKKYLKEICESEKNARIRNQEYLKQFERIQANI----TASLEKLQELKIEFETQI 115
Query: 428 KKMQLLXXXXXXXXXXXXGA---KLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMG 598
KKMQLL K+VM A+IN GTA+SRGLYQPATIFMGRQMSAVS +G
Sbjct: 116 KKMQLLSKDSLGKKGELKDEDKEKVVMRAEINSGTAMSRGLYQPATIFMGRQMSAVSGIG 175
Query: 599 DFSAEQKSPQPTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQ 778
DF+ E+KSPQPTKNFSIPDPHSH+QTAQ SDVT S VVQT GDTQCLNKSDK DGKTSLQ
Sbjct: 176 DFTTERKSPQPTKNFSIPDPHSHQQTAQSSDVTGSRVVQTPGDTQCLNKSDKIDGKTSLQ 235
Query: 779 IGEKMPVTASALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDL 958
IGEK PVTASALSEEEQTHC +IGS AC KS+LSEG++S L+SPL RLSP+NRTTDL
Sbjct: 236 IGEKTPVTASALSEEEQTHCFEIGSNACQSKSNLSEGKKSAELHSPLWERLSPENRTTDL 295
Query: 959 KCDGSSRLEGTEAEILTRKHMKFEKKEQTASP 1054
KCD S R EG+E EILTR+H++ E E+ A P
Sbjct: 296 KCDSSRRSEGSEGEILTREHIEVE--EERARP 325
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,008,979
Number of extensions: 1042672
Number of successful extensions: 3756
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3741
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013703
(1064 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359962.1| PREDICTED: centrosomal protein kizuna isofor... 598 e-171
Alignment gi|XP_003359961.1| PREDICTED: centrosomal protein kizuna isofor... 598 e-171
Alignment gi|XP_001927781.2| PREDICTED: centrosomal protein kizuna isofor... 366 e-101
>ref|XP_003359962.1| PREDICTED: centrosomal protein kizuna isoform 3 [Sus scrofa].
Length = 679
Score = 598 bits (1541), Expect = e-171
Identities = 302/323 (93%), Positives = 306/323 (94%)
Frame = +2
Query: 89 MHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKLYECNPSDICRVKPKYGELK 268
MHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKL+ECNPSDICRVKPKYGELK
Sbjct: 1 MHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKLFECNPSDICRVKPKYGELK 60
Query: 269 KYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQLKKMQLLX 448
KYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQLKKMQLL
Sbjct: 61 KYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQLKKMQLLS 120
Query: 449 XXXXXXXXXXXGAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQKSPQ 628
GAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQKSPQ
Sbjct: 121 KEEKSDVKEEDGAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQKSPQ 180
Query: 629 PTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPVTAS 808
PTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPVTAS
Sbjct: 181 PTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPVTAS 240
Query: 809 ALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSRLEG 988
ALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSRLEG
Sbjct: 241 ALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSRLEG 300
Query: 989 TEAEILTRKHMKFEKKEQTASPL 1057
TEAEILTRKH++ E E+ A PL
Sbjct: 301 TEAEILTRKHIEVE--EERARPL 321
>ref|XP_003359961.1| PREDICTED: centrosomal protein kizuna isoform 2 [Sus scrofa].
Length = 733
Score = 598 bits (1541), Expect = e-171
Identities = 302/323 (93%), Positives = 306/323 (94%)
Frame = +2
Query: 89 MHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKLYECNPSDICRVKPKYGELK 268
MHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKL+ECNPSDICRVKPKYGELK
Sbjct: 1 MHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKLFECNPSDICRVKPKYGELK 60
Query: 269 KYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQLKKMQLLX 448
KYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQLKKMQLL
Sbjct: 61 KYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQLKKMQLLS 120
Query: 449 XXXXXXXXXXXGAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQKSPQ 628
GAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQKSPQ
Sbjct: 121 KEEKSDVKEEDGAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQKSPQ 180
Query: 629 PTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPVTAS 808
PTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPVTAS
Sbjct: 181 PTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPVTAS 240
Query: 809 ALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSRLEG 988
ALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSRLEG
Sbjct: 241 ALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSRLEG 300
Query: 989 TEAEILTRKHMKFEKKEQTASPL 1057
TEAEILTRKH++ E E+ A PL
Sbjct: 301 TEAEILTRKHIEVE--EERARPL 321
>ref|XP_001927781.2| PREDICTED: centrosomal protein kizuna isoform 1 [Sus scrofa].
Length = 618
Score = 366 bits (940), Expect = e-101
Identities = 188/208 (90%), Positives = 191/208 (91%)
Frame = +2
Query: 434 MQLLXXXXXXXXXXXXGAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAE 613
MQLL GAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAE
Sbjct: 1 MQLLSKEEKSDVKEEDGAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAE 60
Query: 614 QKSPQPTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKM 793
QKSPQPTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKM
Sbjct: 61 QKSPQPTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKM 120
Query: 794 PVTASALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGS 973
PVTASALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGS
Sbjct: 121 PVTASALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGS 180
Query: 974 SRLEGTEAEILTRKHMKFEKKEQTASPL 1057
SRLEGTEAEILTRKH++ E E+ A PL
Sbjct: 181 SRLEGTEAEILTRKHIEVE--EERARPL 206
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,100,970
Number of extensions: 670651
Number of successful extensions: 2463
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2455
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013703
(1064 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028470.1| centrosomal protein kizuna [Mus musculus]. 389 e-108
>ref|NP_001028470.1| centrosomal protein kizuna [Mus musculus].
Length = 695
Score = 389 bits (999), Expect = e-108
Identities = 209/326 (64%), Positives = 245/326 (75%)
Frame = +2
Query: 80 GGGMHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKLYECNPSDICRVKPKYG 259
GGG+ +A SA L SP YY+R+ LQQ LRDSEKKRL+LE KLYE N SD CR K K
Sbjct: 9 GGGLRQASATSAPLASPSYYERVGQLQQALRDSEKKRLDLEDKLYEYNKSDKCRAKLKCA 68
Query: 260 ELKKYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQLKKMQ 439
+LKKYLKE+CESE+RA+ RNQ YLK+FE +Q ++ H TT E KLQ+LK EYE ++K+M+
Sbjct: 69 KLKKYLKEVCESERRAQVRNQGYLKKFECVQTYVEHLTTNTE-KLQKLKTEYEAEVKRMR 127
Query: 440 LLXXXXXXXXXXXXGAKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQK 619
LL GAK + A IN GTA+SRGLYQPATIFMGRQMSA+SS+ DFS E K
Sbjct: 128 LLSKDSLGMSDED-GAKDAVQAGINSGTAMSRGLYQPATIFMGRQMSAISSIEDFSTELK 186
Query: 620 SPQPTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPV 799
S QPTKNFSI DPHSH+QTAQ S VTDS VVQTNGDTQCLNKSDK GKTSLQ GEK PV
Sbjct: 187 SNQPTKNFSISDPHSHQQTAQSSCVTDSCVVQTNGDTQCLNKSDKIHGKTSLQTGEKAPV 246
Query: 800 TASALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSR 979
T+ LS EEQTHC +IGS KS+LSEGR+S L+S LQ RLSP+N TDLKCD SSR
Sbjct: 247 TSYVLSAEEQTHCLEIGSSTQHSKSNLSEGRKSAELHSSLQERLSPENSITDLKCDSSSR 306
Query: 980 LEGTEAEILTRKHMKFEKKEQTASPL 1057
EG++ EILT++H+ E +E+ A PL
Sbjct: 307 SEGSDREILTQEHI--EVREERAGPL 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,933,205
Number of extensions: 890258
Number of successful extensions: 3256
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3251
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013703
(1064 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060944.3| centrosomal protein kizuna isoform 1 [Homo sapi... 411 e-115
Alignment gi|NP_001156494.1| centrosomal protein kizuna isoform 2 [Homo s... 269 3e-72
Alignment gi|NP_001156495.1| centrosomal protein kizuna isoform 3 [Homo s... 263 3e-70
>ref|NP_060944.3| centrosomal protein kizuna isoform 1 [Homo sapiens].
Length = 673
Score = 411 bits (1056), Expect = e-115
Identities = 220/324 (67%), Positives = 250/324 (77%), Gaps = 2/324 (0%)
Frame = +2
Query: 89 MHRAITPSAYLPSPDYYKRLDHLQQGLRDSEKKRLELERKLYECNPSDICRVKPKYGELK 268
M R + + L SPDYY+RL LQ GLRDSEKKRL+LE+KLYE N SD CRVK KY +LK
Sbjct: 1 MSRTLASAVPLSSPDYYERLGQLQHGLRDSEKKRLDLEKKLYEYNQSDTCRVKLKYVKLK 60
Query: 269 KYLKEICESEKRARTRNQEYLKRFEQIQAHLGHFTTKAELKLQELKVEYETQLKKMQLLX 448
YLKEICESEK+A TRNQEYLKRFE++QAH+ HFTT E KLQ+LK+EYETQ+KKM
Sbjct: 61 NYLKEICESEKKAHTRNQEYLKRFERVQAHVVHFTTNTE-KLQKLKLEYETQIKKMLCSK 119
Query: 449 XXXXXXXXXXXG--AKLVMPAKINLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQKS 622
K+ + IN GTA+SRGLYQPATIFMGRQMSA+ SM DFS E KS
Sbjct: 120 DSLGLKEELTDEDREKVAVHEGINSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKS 179
Query: 623 PQPTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPVT 802
PQPTKNFSIPDPHSHRQTAQ S+VTDS VVQT+ DTQCLNKSD DGK SLQIGEKMPVT
Sbjct: 180 PQPTKNFSIPDPHSHRQTAQSSNVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVT 239
Query: 803 ASALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSRL 982
AS LSEEEQTHC +IGS GKS+LSEG++S L SPL+ RLSP+NRTTDLKCD SS
Sbjct: 240 ASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSS-- 297
Query: 983 EGTEAEILTRKHMKFEKKEQTASP 1054
G+E EILTR+H++ E+K ASP
Sbjct: 298 -GSEGEILTREHIEVEEKR--ASP 318
>ref|NP_001156494.1| centrosomal protein kizuna isoform 2 [Homo sapiens].
Length = 570
Score = 269 bits (688), Expect = 3e-72
Identities = 146/220 (66%), Positives = 167/220 (75%), Gaps = 2/220 (0%)
Frame = +2
Query: 401 LKVEYETQLKKMQLLXXXXXXXXXXXXG--AKLVMPAKINLGTAVSRGLYQPATIFMGRQ 574
+++EYETQ+KKM K+ + IN GTA+SRGLYQPATIFMGRQ
Sbjct: 1 MQLEYETQIKKMLCSKDSLGLKEELTDEDREKVAVHEGINSGTAMSRGLYQPATIFMGRQ 60
Query: 575 MSAVSSMGDFSAEQKSPQPTKNFSIPDPHSHRQTAQRSDVTDSNVVQTNGDTQCLNKSDK 754
MSA+ SM DFS E KSPQPTKNFSIPDPHSHRQTAQ S+VTDS VVQT+ DTQCLNKSD
Sbjct: 61 MSAILSMRDFSTEHKSPQPTKNFSIPDPHSHRQTAQSSNVTDSCVVQTSNDTQCLNKSDN 120
Query: 755 TDGKTSLQIGEKMPVTASALSEEEQTHCSKIGSGACLGKSHLSEGRRSPGLYSPLQARLS 934
DGK SLQIGEKMPVTAS LSEEEQTHC +IGS GKS+LSEG++S L SPL+ RLS
Sbjct: 121 IDGKASLQIGEKMPVTASVLSEEEQTHCLEIGSNTRHGKSNLSEGKKSAELNSPLRERLS 180
Query: 935 PKNRTTDLKCDGSSRLEGTEAEILTRKHMKFEKKEQTASP 1054
P+NRTTDLKCD SS G+E EILTR+H++ E+K ASP
Sbjct: 181 PENRTTDLKCDSSS---GSEGEILTREHIEVEEKR--ASP 215
>ref|NP_001156495.1| centrosomal protein kizuna isoform 3 [Homo sapiens].
Length = 540
Score = 263 bits (671), Expect = 3e-70
Identities = 137/182 (75%), Positives = 152/182 (83%)
Frame = +2
Query: 509 INLGTAVSRGLYQPATIFMGRQMSAVSSMGDFSAEQKSPQPTKNFSIPDPHSHRQTAQRS 688
IN GTA+SRGLYQPATIFMGRQMSA+ SM DFS E KSPQPTKNFSIPDPHSHRQTAQ S
Sbjct: 9 INSGTAMSRGLYQPATIFMGRQMSAILSMRDFSTEHKSPQPTKNFSIPDPHSHRQTAQSS 68
Query: 689 DVTDSNVVQTNGDTQCLNKSDKTDGKTSLQIGEKMPVTASALSEEEQTHCSKIGSGACLG 868
+VTDS VVQT+ DTQCLNKSD DGK SLQIGEKMPVTAS LSEEEQTHC +IGS G
Sbjct: 69 NVTDSCVVQTSNDTQCLNKSDNIDGKASLQIGEKMPVTASVLSEEEQTHCLEIGSNTRHG 128
Query: 869 KSHLSEGRRSPGLYSPLQARLSPKNRTTDLKCDGSSRLEGTEAEILTRKHMKFEKKEQTA 1048
KS+LSEG++S L SPL+ RLSP+NRTTDLKCD SS G+E EILTR+H++ E+K A
Sbjct: 129 KSNLSEGKKSAELNSPLRERLSPENRTTDLKCDSSS---GSEGEILTREHIEVEEKR--A 183
Query: 1049 SP 1054
SP
Sbjct: 184 SP 185
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,959,663
Number of extensions: 1052780
Number of successful extensions: 3888
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3876
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013703
(1064 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1082 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 1082 bits (546), Expect = 0.0
Identities = 572/578 (98%), Gaps = 2/578 (0%)
Strand = Plus / Plus
Query: 489 agcttgtaatgccagcaaaaattaacttggggacagctgtgtcaagaggattgtatcaac 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32967591 agcttgtaatgccagcaaaaattaacttggggacagctgtgtcaagaggattgtatcaac 32967650
Query: 549 cagcaacaatctttatgggccgccaaatgtcagccgtctcaagcatgggggatttcagtg 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32967651 cagcaacaatctttatgggccgccaaatgtcagccgtctcaagcatgggggatttcagtg 32967710
Query: 609 cagagcagaaatctccccagcccacaaagaacttttcaattcctgacccacattcacacc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32967711 cagagcagaaatctccccagcccacaaagaacttttcaattcctgacccacattcacacc 32967770
Query: 669 gacagacagcccagcgcagtgatgtgacagacagcaatgtagtacaaactaatggtgaca 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32967771 gacagacagcccagcgcagtgatgtgacagacagcaatgtagtacaaactaatggtgaca 32967830
Query: 729 cgcagtgcttaaataagtctgacaaaacagatggaaagacatctcttcagattggtgaga 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32967831 cgcagtgcttaaataagtctgacaaaacagatggaaagacatctcttcagattggtgaga 32967890
Query: 789 aaatgcccgtcacagccagcgccttgtctgaggaggaacagactcattgctccaagatag 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32967891 aaatgcccgtcacagccagcgccttgtctgaggaggaacagactcattgctccaagatag 32967950
Query: 849 gaagcggtgcctgtcttggcaagagtcatttatctgaaggcagaaggtcccctgggctct 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32967951 gaagcggtgcctgtcttggcaagagtcatttatctgaaggcagaaggtcccctgggctct 32968010
Query: 909 attccccgttacaggcgagattaagcccaaagaacagaaccactgatttaaagtgcgacg 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32968011 attccccgttacaggcgagattaagcccaaagaacagaaccactgatttaaagtgcgacg 32968070
Query: 969 gttccagcagattggagggaacagaggcagaaattctgacacgaaaacata-tgaagttt 1027
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 32968071 gttccagcagattggagggaacagaggcagaaattctgacacggaaacatattgaagttg 32968130
Query: 1028 gagaagaaagag-cagaccgctagtccccttgctatca 1064
|||||||||| |||||||||||||||||||||||||
Sbjct: 32968131 aggaagaaagagccagaccgctagtccccttgctatca 32968168
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 1 gtctacccgcggtgcatggtggggccgtcgcctcagacaaccaggtccggccggccccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32928159 gtctacccgcggtgcatggtggggccgtcgcctcagacaaccaggtccggccggccccga 32928218
Query: 61 ggctgtgcggagccggtaaggcggcggaatgcaccgggctatcacgccatccgcgtacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32928219 ggctgtgcggagccggtaaggcggcggaatgcaccgggctatcacgccatccgcgtacct 32928278
Query: 121 gccgagccccgactactacaagaggctggaccacctccagcaagggctgcgggacag 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32928279 gccgagccccgactactacaagaggctggaccacctccagcaagggctgcgggacag 32928335
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 239 agagttaagccgaagtatggagaactaaagaagtacctgaaggaaatatgtgaatcagaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32936962 agagttaagccgaagtatggagaactaaagaagtacctgaaggaaatatgtgaatcagaa 32937021
Query: 299 aagagggctcgaactcgaaaccaagaatacttaaagcggtttgagcagatccaagctcac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32937022 aagagggctcgaactcgaaaccaagaatacttaaagcggtttgagcagatccaagctcac 32937081
Query: 359 cttgggcactttaccacaaaggcagaactgaagctgcaagaactgaaggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32937082 cttgggcactttaccacaaaggcagaactgaagctgcaagaactgaaggt 32937131
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 405 aggttgaatatgagactcaacttaagaagatgcagctactttcaaaagaggaaaagagtg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32945202 aggttgaatatgagactcaacttaagaagatgcagctactttcaaaagaggaaaagagtg 32945261
Query: 465 acgtgaaagaggaggatggagcaaag 490
||||||||||||||||||||||||||
Sbjct: 32945262 acgtgaaagaggaggatggagcaaag 32945287
Score = 117 bits (59), Expect = 1e-23
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 174 acagtgaaaagaagagattggagctagaaaggaaactctatgaatgtaatccatctgata 233
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 32933300 acagtgaaaagaagagattggagctggaaaggaaactctttgaatgtaatccatctgata 32933359
Query: 234 tatgcag 240
|||||||
Sbjct: 32933360 tatgcag 32933366
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,408,466
Number of extensions: 981
Number of successful extensions: 981
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 5
Length of query: 1064
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1043
Effective length of database: 2,808,413,156
Effective search space: 2929174921708
Effective search space used: 2929174921708
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)