Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013706
(1206 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076865.1| 116 kDa U5 small nuclear ribonucleoprotein c... 748 0.0
Alignment gi|NP_001068589.1| elongation factor 2 [Bos taurus]. 325 4e-89
Alignment gi|XP_002696653.1| PREDICTED: elongation factor Tu GTP binding ... 90 3e-18
Alignment gi|XP_002696652.1| PREDICTED: elongation factor Tu GTP binding ... 90 3e-18
Alignment gi|XP_606001.5| PREDICTED: elongation factor Tu GTP binding dom... 74 2e-13
>ref|NP_001076865.1| 116 kDa U5 small nuclear ribonucleoprotein component [Bos taurus].
Length = 972
Score = 748 bits (1931), Expect = 0.0
Identities = 372/379 (98%), Positives = 374/379 (98%), Gaps = 1/379 (0%)
Frame = +2
Query: 5 PVTPPTA-QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 181
PV P +MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI
Sbjct: 594 PVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 653
Query: 182 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 361
KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK
Sbjct: 654 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 713
Query: 362 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 541
LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG
Sbjct: 714 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 773
Query: 542 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 721
TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF
Sbjct: 774 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 833
Query: 722 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 901
VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
Sbjct: 834 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 893
Query: 902 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 1081
QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF
Sbjct: 894 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 953
Query: 1082 DDPMVLELAKQDVVLNYPM 1138
DDPM+LELAKQDVVLNYPM
Sbjct: 954 DDPMLLELAKQDVVLNYPM 972
>ref|NP_001068589.1| elongation factor 2 [Bos taurus].
Length = 858
Score = 325 bits (834), Expect = 4e-89
Identities = 161/354 (45%), Positives = 230/354 (64%), Gaps = 1/354 (0%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
++++GL+++ KS P + +EESGEH+I G GEL+L+ + DL + ++ I IK +DPVV+
Sbjct: 519 KLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVS 578
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK 385
+ ETV E S++ C +++PNK N++ M A
Animal-Genome cDNA 20110601C-013706
Animal-Genome cDNA 20110601C-013706
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013706
(1206 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548058.2| PREDICTED: similar to 116 kDa U5 small nuclear ... 748 0.0
Alignment gi|XP_533949.2| PREDICTED: similar to Elongation factor 2 (EF-2... 281 7e-76
Alignment gi|XP_852913.1| PREDICTED: similar to Elongation factor 2 (EF-2... 248 6e-66
Alignment gi|XP_536210.2| PREDICTED: similar to elongation factor Tu GTP ... 90 5e-18
Alignment gi|XP_850111.1| PREDICTED: similar to elongation factor Tu GTP ... 90 5e-18
Alignment gi|XP_535276.2| PREDICTED: similar to mitochondrial elongation ... 55 1e-07
Alignment gi|XP_852019.1| PREDICTED: similar to elongation factor Tu GTP ... 50 3e-06
Alignment gi|XP_534320.2| PREDICTED: similar to G elongation factor, mito... 50 3e-06
>ref|XP_548058.2| PREDICTED: similar to 116 kDa U5 small nuclear ribonucleoprotein
component (U5 snRNP-specific protein, 116 kDa) (U5-116
kDa) (Elongation factor Tu GTP binding domain protein 2)
[Canis familiaris].
Length = 972
Score = 748 bits (1931), Expect = 0.0
Identities = 372/379 (98%), Positives = 374/379 (98%), Gaps = 1/379 (0%)
Frame = +2
Query: 5 PVTPPTA-QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 181
PV P +MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI
Sbjct: 594 PVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 653
Query: 182 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 361
KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK
Sbjct: 654 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 713
Query: 362 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 541
LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG
Sbjct: 714 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 773
Query: 542 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 721
TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF
Sbjct: 774 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 833
Query: 722 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 901
VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
Sbjct: 834 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 893
Query: 902 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 1081
QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF
Sbjct: 894 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 953
Query: 1082 DDPMVLELAKQDVVLNYPM 1138
DDPM+LELAKQDVVLNYPM
Sbjct: 954 DDPMLLELAKQDVVLNYPM 972
>ref|XP_533949.2| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis familiaris].
Length = 698
Score = 281 bits (720), Expect = 7e-76
Identities = 138/300 (46%), Positives = 193/300 (64%), Gaps = 1/300 (0%)
Frame = +2
Query: 188 ADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLG 367
+DPVV++ ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+
Sbjct: 413 SDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRA 472
Query: 368 EFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTR 547
+ KY+WD+ AR IW FGPD TGPN+L D T + L +KDS+V GFQW T+
Sbjct: 473 RYLAEKYEWDVAEARKIWCFGPDGTGPNVLTDITKGVQY----LNEIKDSVVAGFQWATK 528
Query: 548 EGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVE 727
EG LC+E +R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE
Sbjct: 529 EGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVE 588
Query: 728 VQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQA 907
+Q P V +Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQA
Sbjct: 589 IQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQA 648
Query: 908 FSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV-SISKFFD 1084
F VF HWQI+PGDP D + RP + + +TR+RKGL E + ++ F D
Sbjct: 649 FPQCVFDHWQILPGDPFDNT--SRP----------SQVVAETRKRKGLKEGIPALDNFLD 696
>ref|XP_852913.1| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis familiaris].
Length = 569
Score = 248 bits (634), Expect = 6e-66
Identities = 127/295 (43%), Positives = 180/295 (61%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
++++GL+++ KS P + +EESGEH+I G GEL+L+ + DL K ++ I IK +DPVV
Sbjct: 289 KLVEGLKRLAKSDPMVQCIIEESGEHIIEGAGELHLEICLKDLEKDHACIPIKKSDPVVP 348
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK 385
+ ETV+ P + A P GLAEDI+ V K+ + K
Sbjct: 349 YHETVI-----------PQQAQLGVHEARPFPDGLAEDIDKGEVSAHQELKQQARYLAEK 397
Query: 386 YDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD 565
Y+WD+ AR IW FGPD TG NIL D T + L +K+S+V GFQW T+EG LC+
Sbjct: 398 YEWDVAEARKIWCFGPDGTGTNILTDITKGVQY----LNEIKNSVVAGFQWATKEGALCE 453
Query: 566 ELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD 745
E I V+F D + + +HRGGGQIIP AR +Y++ L A P LMEP Y VE+Q P
Sbjct: 454 ENISGVRFHEHDVTLHVDAIHRGGGQIIPIARHCLYTSVLTAQPWLMEPIYLVEIQCPEQ 513
Query: 746 CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAF 910
V +Y VL R+ GHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF
Sbjct: 514 VVGGIYDVLNRKLGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTSGQAF 568
>ref|XP_536210.2| PREDICTED: similar to elongation factor Tu GTP binding domain
containing 1 isoform 5 [Canis familiaris].
Length = 1077
Score = 89.7 bits (221), Expect = 5e-18
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 4/142 (2%)
Frame = +2
Query: 638 GQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 817
GQ+I T + A + RLM Y ++ A D + VY VL++R G V Q+ G
Sbjct: 916 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEG 975
Query: 818 SPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPL----DKSIVIRPL 985
+ ++ IKA +P +SFGF ++R T G A VF HW+I+P DP + +
Sbjct: 976 TDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFG 1035
Query: 986 EPQPAPHLAREFMIKTRRRKGL 1051
E + + AR++M R+RKGL
Sbjct: 1036 EKADSENQARKYMNAVRKRKGL 1057
Score = 62.0 bits (149), Expect = 1e-09
Identities = 26/92 P GLAEDI+ V K+ + K
Sbjct: 579 YRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEK 638
Query: 386 YDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD 565
Y+WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+
Sbjct: 639 YEWDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCE 694
Query: 566 ELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD 745
E +R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P
Sbjct: 695 ENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQ 754
Query: 746 CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVF 925
V +Y VL R+RGHV ++ + G+P++ +KA++P +SFGF DLR++T GQAF VF
Sbjct: 755 VVGGIYGVLNRKRGHVFEETQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVF 814
Query: 926 HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV-SISKFFD 1084
HWQI+PGDP D + RP + + +TR+RKGL E + ++ F D
Sbjct: 815 DHWQILPGDPFDNT--SRP----------SQVVAETRKRKGLKEGIPALDNFLD 856
>ref|XP_002696653.1| PREDICTED: elongation factor Tu GTP binding domain containing 1
isoform 2 [Bos taurus].
Length = 1078
Score = 90.1 bits (222), Expect = 3e-18
Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +2
Query: 638 GQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 817
GQ+I T + A + RLM Y ++ A +D + VY VL++R G V Q+ G
Sbjct: 917 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEG 976
Query: 818 SPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPL----DKSIVIRPL 985
+ ++ IKA +P +SFGF ++R T G A VF HW+I+P DP + +
Sbjct: 977 TDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFG 1036
Query: 986 EPQPAPHLAREFMIKTRRRKGL 1051
E + + AR++M R+RKGL
Sbjct: 1037 EKADSENQARKYMNAVRKRKGL 1058
Score = 64.7 bits (156), Expect = 2e-10
Identities = 30/116 (25%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DL++ +++I+I V++P++
Sbjct: 581 QLVKGMKLLNQADPCVQVFIQETGEHVLVTAGEVHLQRCLDDLKERFAKIEISVSEPIIP 640
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLE------KGLAEDIENEVVQITWNR 355
F ET+ + + E K+ K+ +I + E +G+ D + +T N+
Sbjct: 641 FRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSNGLITMMTPNK 696
>ref|XP_002696652.1| PREDICTED: elongation factor Tu GTP binding domain containing 1
isoform 1 [Bos taurus].
Length = 1129
Score = 90.1 bits (222), Expect = 3e-18
Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +2
Query: 638 GQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 817
GQ+I T + A + RLM Y ++ A +D + VY VL++R G V Q+ G
Sbjct: 968 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEG 1027
Query: 818 SPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPL----DKSIVIRPL 985
+ ++ IKA +P +SFGF ++R T G A VF HW+I+P DP + +
Sbjct: 1028 TDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFG 1087
Query: 986 EPQPAPHLAREFMIKTRRRKGL 1051
E + + AR++M R+RKGL
Sbjct: 1088 EKADSENQARKYMNAVRKRKGL 1109
Score = 64.7 bits (156), Expect = 2e-10
Identities = 30/116 (25%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DL++ +++I+I V++P++
Sbjct: 632 QLVKGMKLLNQADPCVQVFIQETGEHVLVTAGEVHLQRCLDDLKERFAKIEISVSEPIIP 691
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLE------KGLAEDIENEVVQITWNR 355
F ET+ + + E K+ K+ +I + E +G+ D + +T N+
Sbjct: 692 FRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSNGLITMMTPNK 747
>ref|XP_606001.5| PREDICTED: elongation factor Tu GTP binding domain containing 1,
partial [Bos taurus].
Length = 1107
Score = 74.3 bits (181), Expect = 2e-13
Identities = 36/101 (35%), Positives = 55/101 (54%)
Frame = +2
Query: 638 GQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 817
GQ+I T + A + RLM Y ++ A +D + VY VL++R G V Q+ G
Sbjct: 978 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEG 1037
Query: 818 SPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQI 940
+ ++ IKA +P +SFGF ++R T G A VF HW++
Sbjct: 1038 TDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEV 1078
Score = 64.7 bits (156), Expect = 2e-10
Identities = 30/116 (25%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DL++ +++I+I V++P++
Sbjct: 642 QLVKGMKLLNQADPCVQVFIQETGEHVLVTAGEVHLQRCLDDLKERFAKIEISVSEPIIP 701
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLE------KGLAEDIENEVVQITWNR 355
F ET+ + + E K+ K+ +I + E +G+ D + +T N+
Sbjct: 702 FRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSNGLITMMTPNK 757
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,458,845
Number of extensions: 1741226
Number of successful extensions: 7149
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7104
Number of HSP's successfully gapped: 8
Length of query: 402
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 298
Effective length of database: 14,240,222
Effective search space: 4243586156
Effective search space used: 4243586156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
(28%), Positives = 57/92 (61%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DL++ ++ I I V++P++
Sbjct: 581 QLVRGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFARIQISVSEPIIP 640
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLE 301
F ET+ + + E K+ K+ +I + E
Sbjct: 641 FRETITKPPKVDMVNEEIGKQQKVAVIHQTKE 672
>ref|XP_850111.1| PREDICTED: similar to elongation factor Tu GTP binding domain
containing 1 isoform 6 [Canis familiaris].
Length = 1128
Score = 89.7 bits (221), Expect = 5e-18
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 4/142 (2%)
Frame = +2
Query: 638 GQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 817
GQ+I T + A + RLM Y ++ A D + VY VL++R G V Q+ G
Sbjct: 967 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEG 1026
Query: 818 SPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPL----DKSIVIRPL 985
+ ++ IKA +P +SFGF ++R T G A VF HW+I+P DP + +
Sbjct: 1027 TDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFG 1086
Query: 986 EPQPAPHLAREFMIKTRRRKGL 1051
E + + AR++M R+RKGL
Sbjct: 1087 EKADSENQARKYMNAVRKRKGL 1108
Score = 62.0 bits (149), Expect = 1e-09
Identities = 26/92 (28%), Positives = 57/92 (61%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DL++ ++ I I V++P++
Sbjct: 632 QLVRGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFARIQISVSEPIIP 691
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLE 301
F ET+ + + E K+ K+ +I + E
Sbjct: 692 FRETITKPPKVDMVNEEIGKQQKVAVIHQTKE 723
>ref|XP_535276.2| PREDICTED: similar to mitochondrial elongation factor G2 isoform 1
[Canis familiaris].
Length = 780
Score = 55.5 bits (132), Expect = 1e-07
Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 5/317 (1%)
Frame = +2
Query: 41 LRKVNKSYPSLTTKVE-ESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCET 217
L+ + + PSL K++ +SG+ ++ G GEL+++ ++HD K ++ + V + ET
Sbjct: 509 LKCLQREDPSLKVKLDPDSGQTILCGMGELHIE-IIHDRIKREYGLETYLGPLQVAYRET 567
Query: 218 VVET-SSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDW 394
++ + T K + + ++ NE +T K G
Sbjct: 568 ILNVVHATDTLDRTLGDKRHLVTVELEVKP-------NETCCVTPVLKYAG--------- 611
Query: 395 DLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELI 574
V + LP +A+ + + +QG PL I
Sbjct: 612 --------------------CVSEDLPKASQEAIENGIHSACLQG--------PLLGSPI 643
Query: 575 RNVKFKILDAVVAQEPLHRGGGQIIPTA--RRVVYSAFLMATPRLMEPYYFVEVQAPADC 748
++V + ++ H G + +A R V A A +++EP +EV P D
Sbjct: 644 QDVAITLHSLII-----HPGTSTTMISACVSRCVQKALKKADKQVLEPLMNLEVTVPGDY 698
Query: 749 VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQA-FSLSVF 925
+S V LA+RRG + + + + + F+P + G+ T LRT T G A F+L +
Sbjct: 699 LSPVLADLAQRRGTIQEIQTRQENKI--VIGFVPLAEIMGYSTVLRTLTSGSATFALELS 756
Query: 926 HHWQIVPGDPLDKSIVI 976
++ + +P D+SI++
Sbjct: 757 NYQAM---NPQDQSILL 770
>ref|XP_852019.1| PREDICTED: similar to elongation factor Tu GTP binding domain
containing 1 [Canis familiaris].
Length = 198
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Frame = +2
Query: 776 RRRGHVTQDAPIPGSPLYTIKAFI---PAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVP 946
+R G V Q+ G+ + FI P ++SFGF +R G A VF HW+I+P
Sbjct: 80 KREGRVLQEEMKEGTDTFINNMFITVLPVVESFGFADGIRKQMNGVASRQLVFSHWEIIP 139
Query: 947 GDPL----DKSIVIRPLEPQPAPHLAREFMIKTRRRKGL 1051
DP + + E + + A ++M R+RKGL
Sbjct: 140 SDPFWVLTTEKEYLHFGEKADSENQAGKYMNAVRKRKGL 178
>ref|XP_534320.2| PREDICTED: similar to G elongation factor, mitochondrial 1 [Canis
familiaris].
Length = 771
Score = 50.4 bits (119), Expect = 3e-06
Identities = 40/148 (27%), Positives = 67/148 (45%)
Frame = +2
Query: 461 DDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGG 640
D+T + V K + +V+ +GF +GPL + ++F + D A +
Sbjct: 591 DETFGANVPKQFVPAVE----KGFLDACEKGPLSGHKLSGLRFVLQDG--AHHMVDSNEI 644
Query: 641 QIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGS 820
I + A AT ++EP VEV AP + V + RR G +T I
Sbjct: 645 SFIRAGEGALKQALANATLCILEPIMSVEVIAPNEFQGQVIAGINRRHGVITGQDGI--E 702
Query: 821 PLYTIKAFIPAIDSFGFETDLRTHTQGQ 904
+T+ A +P + FG+ T+LR+ T+G+
Sbjct: 703 DYFTLYADVPLNEMFGYSTELRSCTEGK 730
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,755,079
Number of extensions: 1792058
Number of successful extensions: 7042
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6986
Number of HSP's successfully gapped: 10
Length of query: 402
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 297
Effective length of database: 15,374,224
Effective search space: 4566144528
Effective search space used: 4566144528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013706
(1206 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131381.2| PREDICTED: 116 kDa U5 small nuclear ribonucl... 748 0.0
Alignment gi|XP_003358060.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 748 0.0
Alignment gi|XP_003131380.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 748 0.0
Alignment gi|XP_003354050.1| PREDICTED: elongation factor 2 [Sus scrofa]. 326 2e-89
Alignment gi|XP_003354054.1| PREDICTED: elongation factor 2-like [Sus scr... 251 6e-67
Alignment gi|XP_003354053.1| PREDICTED: elongation factor 2-like [Sus scr... 251 6e-67
Alignment gi|XP_003361188.1| PREDICTED: elongation factor Tu GTP-binding ... 136 3e-32
Alignment gi|XP_003361187.1| PREDICTED: elongation factor Tu GTP-binding ... 136 3e-32
Alignment gi|XP_003123750.1| PREDICTED: ribosome-releasing factor 2, mito... 55 8e-08
Alignment gi|XP_003358691.1| PREDICTED: elongation factor G, mitochondria... 52 5e-07
>ref|XP_003131381.2| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
isoform 2 [Sus scrofa].
Length = 924
Score = 748 bits (1931), Expect = 0.0
Identities = 372/379 (98%), Positives = 374/379 (98%), Gaps = 1/379 (0%)
Frame = +2
Query: 5 PVTPPTA-QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 181
PV P +MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI
Sbjct: 546 PVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 605
Query: 182 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 361
KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK
Sbjct: 606 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 665
Query: 362 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 541
LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG
Sbjct: 666 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 725
Query: 542 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 721
TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF
Sbjct: 726 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 785
Query: 722 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 901
VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
Sbjct: 786 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 845
Query: 902 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 1081
QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF
Sbjct: 846 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 905
Query: 1082 DDPMVLELAKQDVVLNYPM 1138
DDPM+LELAKQDVVLNYPM
Sbjct: 906 DDPMLLELAKQDVVLNYPM 924
>ref|XP_003358060.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component [Sus
scrofa].
Length = 972
Score = 748 bits (1931), Expect = 0.0
Identities = 372/379 (98%), Positives = 374/379 (98%), Gaps = 1/379 (0%)
Frame = +2
Query: 5 PVTPPTA-QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 181
PV P +MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI
Sbjct: 594 PVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 653
Query: 182 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 361
KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK
Sbjct: 654 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 713
Query: 362 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 541
LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG
Sbjct: 714 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 773
Query: 542 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 721
TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF
Sbjct: 774 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 833
Query: 722 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 901
VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
Sbjct: 834 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 893
Query: 902 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 1081
QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF
Sbjct: 894 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 953
Query: 1082 DDPMVLELAKQDVVLNYPM 1138
DDPM+LELAKQDVVLNYPM
Sbjct: 954 DDPMLLELAKQDVVLNYPM 972
>ref|XP_003131380.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
isoform 1 [Sus scrofa].
Length = 972
Score = 748 bits (1931), Expect = 0.0
Identities = 372/379 (98%), Positives = 374/379 (98%), Gaps = 1/379 (0%)
Frame = +2
Query: 5 PVTPPTA-QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 181
PV P +MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI
Sbjct: 594 PVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 653
Query: 182 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 361
KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK
Sbjct: 654 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 713
Query: 362 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 541
LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG
Sbjct: 714 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 773
Query: 542 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 721
TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF
Sbjct: 774 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 833
Query: 722 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 901
VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
Sbjct: 834 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 893
Query: 902 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 1081
QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF
Sbjct: 894 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 953
Query: 1082 DDPMVLELAKQDVVLNYPM 1138
DDPM+LELAKQDVVLNYPM
Sbjct: 954 DDPMLLELAKQDVVLNYPM 972
>ref|XP_003354050.1| PREDICTED: elongation factor 2 [Sus scrofa].
Length = 858
Score = 326 bits (835), Expect = 2e-89
Identities = 161/354 (45%), Positives = 231/354 (65%), Gaps = 1/354 (0%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
++++GL+++ KS P + +EESGEH+I G GEL+L+ + DL + ++ I IK +DPVV+
Sbjct: 519 KLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVS 578
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK 385
+ ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + K
Sbjct: 579 YRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEK 638
Query: 386 YDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD 565
Y+WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+
Sbjct: 639 YEWDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCE 694
Query: 566 ELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD 745
E +R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P
Sbjct: 695 ENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQ 754
Query: 746 CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVF 925
V +Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF
Sbjct: 755 VVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVF 814
Query: 926 HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV-SISKFFD 1084
HWQI+PGDP D + RP + + +TR+RKGL E + ++ F D
Sbjct: 815 DHWQILPGDPFDNT--SRP----------SQVVAETRKRKGLKEGIPALDNFLD 856
>ref|XP_003354054.1| PREDICTED: elongation factor 2-like [Sus scrofa].
Length = 255
Score = 251 bits (641), Expect = 6e-67
Identities = 125/269 (46%), Positives = 169/269 (62%), Gaps = 1/269 (0%)
Frame = +2
Query: 281 MIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILV 460
M A P GLAEDI+ V K+ + KY+WD+ AR IW FGPD TGPNIL
Sbjct: 1 MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT 60
Query: 461 DDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGG 640
D T + L +KDS+V GFQW T+EG LC+E +R V+F + D + + +HRGGG
Sbjct: 61 DITKGVQY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGG 116
Query: 641 QIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGS 820
QIIPTARR +Y++ L A PRLMEP Y VE+Q P V +Y VL R+RGHV +++ + G+
Sbjct: 117 QIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGT 176
Query: 821 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPA 1000
P++ +KA++P +SFGF DLR++T GQAF VF HWQI+PGDP D + RP
Sbjct: 177 PMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP------ 228
Query: 1001 PHLAREFMIKTRRRKGLSEDV-SISKFFD 1084
+ + +TR+RKGL E + ++ F D
Sbjct: 229 ----SQVVAETRKRKGLKEGIPALDNFLD 253
>ref|XP_003354053.1| PREDICTED: elongation factor 2-like [Sus scrofa].
Length = 255
Score = 251 bits (641), Expect = 6e-67
Identities = 125/269 (46%), Positives = 169/269 (62%), Gaps = 1/269 (0%)
Frame = +2
Query: 281 MIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILV 460
M A P GLAEDI+ V K+ + KY+WD+ AR IW FGPD TGPNIL
Sbjct: 1 MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT 60
Query: 461 DDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGG 640
D T + L +KDS+V GFQW T+EG LC+E +R V+F + D + + +HRGGG
Sbjct: 61 DITKGVQY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGG 116
Query: 641 QIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGS 820
QIIPTARR +Y++ L A PRLMEP Y VE+Q P V +Y VL R+RGHV +++ + G+
Sbjct: 117 QIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGT 176
Query: 821 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPA 1000
P++ +KA++P +SFGF DLR++T GQAF VF HWQI+PGDP D + RP
Sbjct: 177 PMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP------ 228
Query: 1001 PHLAREFMIKTRRRKGLSEDV-SISKFFD 1084
+ + +TR+RKGL E + ++ F D
Sbjct: 229 ----SQVVAETRKRKGLKEGIPALDNFLD 253
>ref|XP_003361188.1| PREDICTED: elongation factor Tu GTP-binding domain-containing protein
1-like isoform 2 [Sus scrofa].
Length = 1069
Score = 136 bits (342), Expect = 3e-32
Identities = 118/478 (24%), Positives = 200/478 (41%), Gaps = 136/478 (28%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DL++ +++I I V++P++
Sbjct: 573 QLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIQISVSEPIIP 632
Query: 206 FCETVVETSSLKCFAE------------------------------------TPNKKNKI 277
F ET+ + + E TPNK +
Sbjct: 633 FRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSXXXXXXTTPNKLATL 692
Query: 278 TMIAEPLEKGLAE------DIENEVVQITWN--------------RKKLGEFFQTKYDWD 397
+ A PL + + + D+ + Q+T + ++K+GEF + + +
Sbjct: 693 CVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGKNTQVIHQKTQEKIGEF-KGRLEQH 751
Query: 398 LLAAR------SIWAFGPDATGPNILVDD---------TLPSEVDKALLGSVKD---SIV 523
L + IW+FGP GPNILV+ T P +D SIV
Sbjct: 752 LTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPDGKASQEANRYRDLGNSIV 811
Query: 524 QGFQWGTREGPLCDELIRNV----------KFK--------------ILDAVVAQ----- 616
GFQ T GP+C+E + V KF+ ++DA +
Sbjct: 812 SGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASDKQNQKQSDLVDAGQGEGETSS 871
Query: 617 -----EPLHRG------------------------GGQIIPTARRVVYSAFLMATPRLME 709
+ +H G GQ+I T + A + RLM
Sbjct: 872 AGDENQEVHNGCSEPFEKRPSQKGESSLTDCYGPFSGQLIATMKEACRYALQVKPQRLMA 931
Query: 710 PYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRT 889
Y ++ A +D + VY VL++R G V Q+ G+ ++ IKA +P +SFGF ++R
Sbjct: 932 AMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRK 991
Query: 890 HTQGQAFSLSVFHHWQIVPGDPL----DKSIVIRPLEPQPAPHLAREFMIKTRRRKGL 1051
T G A VF HW+I+P DP + + E + + AR++M R+RKGL
Sbjct: 992 RTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1049
>ref|XP_003361187.1| PREDICTED: elongation factor Tu GTP-binding domain-containing protein
1-like isoform 1 [Sus scrofa].
Length = 1120
Score = 136 bits (342), Expect = 3e-32
Identities = 118/478 (24%), Positives = 200/478 (41%), Gaps = 136/478 (28%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DL++ +++I I V++P++
Sbjct: 624 QLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIQISVSEPIIP 683
Query: 206 FCETVVETSSLKCFAE------------------------------------TPNKKNKI 277
F ET+ + + E TPNK +
Sbjct: 684 FRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSXXXXXXTTPNKLATL 743
Query: 278 TMIAEPLEKGLAE------DIENEVVQITWN--------------RKKLGEFFQTKYDWD 397
+ A PL + + + D+ + Q+T + ++K+GEF + + +
Sbjct: 744 CVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGKNTQVIHQKTQEKIGEF-KGRLEQH 802
Query: 398 LLAAR------SIWAFGPDATGPNILVDD---------TLPSEVDKALLGSVKD---SIV 523
L + IW+FGP GPNILV+ T P +D SIV
Sbjct: 803 LTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPDGKASQEANRYRDLGNSIV 862
Query: 524 QGFQWGTREGPLCDELIRNV----------KFK--------------ILDAVVAQ----- 616
GFQ T GP+C+E + V KF+ ++DA +
Sbjct: 863 SGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASDKQNQKQSDLVDAGQGEGETSS 922
Query: 617 -----EPLHRG------------------------GGQIIPTARRVVYSAFLMATPRLME 709
+ +H G GQ+I T + A + RLM
Sbjct: 923 AGDENQEVHNGCSEPFEKRPSQKGESSLTDCYGPFSGQLIATMKEACRYALQVKPQRLMA 982
Query: 710 PYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRT 889
Y ++ A +D + VY VL++R G V Q+ G+ ++ IKA +P +SFGF ++R
Sbjct: 983 AMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRK 1042
Query: 890 HTQGQAFSLSVFHHWQIVPGDPL----DKSIVIRPLEPQPAPHLAREFMIKTRRRKGL 1051
T G A VF HW+I+P DP + + E + + AR++M R+RKGL
Sbjct: 1043 RTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100
>ref|XP_003123750.1| PREDICTED: ribosome-releasing factor 2, mitochondrial-like [Sus
scrofa].
Length = 776
Score = 55.1 bits (131), Expect = 8e-08
Identities = 65/308 (21%), Positives = 131/308 (42%), Gaps = 4/308 (1%)
Frame = +2
Query: 41 LRKVNKSYPSLTTKVE-ESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCET 217
L+ + + PSL K++ +SG+ ++ G GEL+++ ++HD K ++ + V + ET
Sbjct: 508 LKCLQREDPSLKVKLDPDSGQTILCGMGELHIE-IIHDRIKREYGLETYLGPLQVAYRET 566
Query: 218 VVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWD 397
++ + + L++ L + + +V + K L
Sbjct: 567 ILNS----------------VRATDALDRTLGD--KRHLVTVELEAKPL----------- 597
Query: 398 LLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIR 577
+ + ++D V + L + ++++ G +GPL I+
Sbjct: 598 ------------ETSSLQPVID--YAQSVTQDLSQASQEAVENGIHSACLQGPLLGSPIQ 643
Query: 578 NVKFKILDAVVAQEPLHRGGGQIIPTA--RRVVYSAFLMATPRLMEPYYFVEVQAPADCV 751
+V + V+ H G + +A R + A A +++EP +EV P D +
Sbjct: 644 DVAVTLHSLVI-----HPGTSTTMISACVSRCMQKALKKADKQILEPLMNLEVTVPRDYL 698
Query: 752 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQA-FSLSVFH 928
S V LA+RRG++ + + + + F+P + G+ T LRT T G A F+L + +
Sbjct: 699 SPVLADLAQRRGNIQEIQTRQDNKV--VIGFVPLAEIMGYSTVLRTLTSGSATFALELSN 756
Query: 929 HWQIVPGD 952
+ + P D
Sbjct: 757 YQAMNPQD 764
>ref|XP_003358691.1| PREDICTED: elongation factor G, mitochondrial-like [Sus scrofa].
Length = 754
Score = 52.4 bits (124), Expect = 5e-07
Identities = 40/148 (27%), Positives = 67/148 (45%)
Frame = +2
Query: 461 DDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGG 640
D+T + V K + +V+ +GF +GPL + ++F + D A +
Sbjct: 574 DETFGANVPKQFVPAVE----KGFLDACEKGPLSGHKLSGLRFVLQDG--AHHMVDSNEI 627
Query: 641 QIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGS 820
I + A AT ++EP VEV AP + V + RR G +T +
Sbjct: 628 SFIRAGEGALKQALANATVCILEPIMSVEVIAPNEFQGPVIAGINRRHGVITGQDGV--E 685
Query: 821 PLYTIKAFIPAIDSFGFETDLRTHTQGQ 904
+T+ A +P D FG+ T+LR+ T+G+
Sbjct: 686 DYFTVYAEVPLNDMFGYSTELRSCTEGK 713
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,536,198
Number of extensions: 1127696
Number of successful extensions: 4533
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4505
Number of HSP's successfully gapped: 12
Length of query: 402
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,829,335
Effective search space: 2657629835
Effective search space used: 2657629835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013706
(1206 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103465.1| 116 kDa U5 small nuclear ribonucleoprotein c... 748 0.0
Alignment gi|NP_035561.1| 116 kDa U5 small nuclear ribonucleoprotein comp... 748 0.0
Alignment gi|NP_031933.1| elongation factor 2 [Mus musculus]. 326 2e-89
Alignment gi|NP_001153144.1| elongation factor Tu GTP-binding domain-cont... 90 4e-18
Alignment gi|NP_780526.2| elongation factor Tu GTP-binding domain-contain... 90 4e-18
Alignment gi|NP_613057.2| elongation factor G, mitochondrial precursor [M... 51 2e-06
>ref|NP_001103465.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform b [Mus
musculus].
Length = 972
Score = 748 bits (1931), Expect = 0.0
Identities = 372/379 (98%), Positives = 374/379 (98%), Gaps = 1/379 (0%)
Frame = +2
Query: 5 PVTPPTA-QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 181
PV P +MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI
Sbjct: 594 PVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 653
Query: 182 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 361
KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK
Sbjct: 654 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 713
Query: 362 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 541
LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG
Sbjct: 714 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 773
Query: 542 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 721
TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF
Sbjct: 774 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 833
Query: 722 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 901
VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
Sbjct: 834 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 893
Query: 902 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 1081
QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF
Sbjct: 894 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 953
Query: 1082 DDPMVLELAKQDVVLNYPM 1138
DDPM+LELAKQDVVLNYPM
Sbjct: 954 DDPMLLELAKQDVVLNYPM 972
>ref|NP_035561.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform a [Mus
musculus].
Length = 971
Score = 748 bits (1931), Expect = 0.0
Identities = 372/379 (98%), Positives = 374/379 (98%), Gaps = 1/379 (0%)
Frame = +2
Query: 5 PVTPPTA-QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 181
PV P +MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI
Sbjct: 593 PVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 652
Query: 182 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 361
KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK
Sbjct: 653 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 712
Query: 362 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 541
LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG
Sbjct: 713 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 772
Query: 542 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 721
TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF
Sbjct: 773 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 832
Query: 722 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 901
VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
Sbjct: 833 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 892
Query: 902 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 1081
QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF
Sbjct: 893 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 952
Query: 1082 DDPMVLELAKQDVVLNYPM 1138
DDPM+LELAKQDVVLNYPM
Sbjct: 953 DDPMLLELAKQDVVLNYPM 971
>ref|NP_031933.1| elongation factor 2 [Mus musculus].
Length = 858
Score = 326 bits (836), Expect = 2e-89
Identities = 162/354 (45%), Positives = 230/354 (64%), Gaps = 1/354 (0%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
++++GL+++ KS P + +EESGEH+I G GEL+L+ + DL + ++ I IK +DPVV+
Sbjct: 519 KLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVS 578
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK 385
+ ETV E S++ C +++PNK N++ M A P GLAEDI+ V K + K
Sbjct: 579 YRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEK 638
Query: 386 YDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD 565
Y+WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+
Sbjct: 639 YEWDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCE 694
Query: 566 ELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD 745
E +R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P
Sbjct: 695 ENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQ 754
Query: 746 CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVF 925
V +Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF
Sbjct: 755 VVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVF 814
Query: 926 HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV-SISKFFD 1084
HWQI+PGDP D S RP + + +TR+RKGL E + ++ F D
Sbjct: 815 DHWQILPGDPFDNS--SRP----------SQVVAETRKRKGLKEGIPALDNFLD 856
>ref|NP_001153144.1| elongation factor Tu GTP-binding domain-containing protein 1 [Mus
musculus].
Length = 1127
Score = 89.7 bits (221), Expect = 4e-18
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +2
Query: 638 GQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 817
GQ+I T + A + RLM Y ++ A +D + VY VL++R G V Q+ G
Sbjct: 966 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEG 1025
Query: 818 SPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPL----DKSIVIRPL 985
+ ++ IKA +P +SFGF ++R T G A VF HW+++P DP + +
Sbjct: 1026 TDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFG 1085
Query: 986 EPQPAPHLAREFMIKTRRRKGL 1051
E + + AR++M R+RKGL
Sbjct: 1086 EKADSENQARKYMNAVRKRKGL 1107
Score = 63.2 bits (152), Expect = 4e-10
Identities = 26/93 (27%), Positives = 59/93 (63%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DLR+ +++I I V++P++
Sbjct: 632 QLVKGMKLLNQADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIP 691
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLEK 304
F ET+ + + E ++ K+ +I + E+
Sbjct: 692 FRETITKPPKVDMVNEEIGRQQKVAVIHQTKEE 724
>ref|NP_780526.2| elongation factor Tu GTP-binding domain-containing protein 1 [Mus
musculus].
Length = 1127
Score = 89.7 bits (221), Expect = 4e-18
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +2
Query: 638 GQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG 817
GQ+I T + A + RLM Y ++ A +D + VY VL++R G V Q+ G
Sbjct: 966 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEG 1025
Query: 818 SPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPL----DKSIVIRPL 985
+ ++ IKA +P +SFGF ++R T G A VF HW+++P DP + +
Sbjct: 1026 TDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFG 1085
Query: 986 EPQPAPHLAREFMIKTRRRKGL 1051
E + + AR++M R+RKGL
Sbjct: 1086 EKADSENQARKYMNAVRKRKGL 1107
Score = 63.2 bits (152), Expect = 4e-10
Identities = 26/93 (27%), Positives = 59/93 (63%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DLR+ +++I I V++P++
Sbjct: 632 QLVKGMKLLNQADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIP 691
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLEK 304
F ET+ + + E ++ K+ +I + E+
Sbjct: 692 FRETITKPPKVDMVNEEIGRQQKVAVIHQTKEE 724
>ref|NP_613057.2| elongation factor G, mitochondrial precursor [Mus musculus].
Length = 751
Score = 51.2 bits (121), Expect = 2e-06
Identities = 40/148 (27%), Positives = 67/148 (45%)
Frame = +2
Query: 461 DDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGG 640
D+T S V K + +V+ +GF +GPL + ++F + D A +
Sbjct: 571 DETFGSNVPKQFVPAVE----KGFLDACEKGPLSGHKLSGLRFVLQDG--AHHMVDSNEI 624
Query: 641 QIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGS 820
I + A T ++EP VEV AP + V+ + RR G +T I
Sbjct: 625 SFIRAGEGALKQALANGTLCIIEPIMSVEVIAPNEFQGTVFAGINRRHGVITGQDGI--E 682
Query: 821 PLYTIKAFIPAIDSFGFETDLRTHTQGQ 904
+T+ A +P + FG+ T+LR+ T+G+
Sbjct: 683 DYFTLYADVPLNNMFGYSTELRSCTEGK 710
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,883,624
Number of extensions: 1443872
Number of successful extensions: 5466
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5431
Number of HSP's successfully gapped: 8
Length of query: 402
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 298
Effective length of database: 12,493,815
Effective search space: 3723156870
Effective search space used: 3723156870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013706
(1206 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136077.1| 116 kDa U5 small nuclear ribonucleoprotein c... 748 0.0
Alignment gi|NP_004238.3| 116 kDa U5 small nuclear ribonucleoprotein comp... 748 0.0
Alignment gi|NP_001952.1| elongation factor 2 [Homo sapiens]. 327 1e-89
Alignment gi|NP_001035700.1| elongation factor Tu GTP-binding domain-cont... 117 3e-26
Alignment gi|NP_078856.4| elongation factor Tu GTP-binding domain-contain... 117 3e-26
Alignment gi|NP_733792.1| ribosome-releasing factor 2, mitochondrial isof... 54 4e-07
Alignment gi|NP_115756.2| ribosome-releasing factor 2, mitochondrial isof... 54 4e-07
Alignment gi|NP_079272.4| elongation factor G, mitochondrial precursor [H... 53 6e-07
>ref|NP_001136077.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform b [Homo
sapiens].
Length = 937
Score = 748 bits (1931), Expect = 0.0
Identities = 372/379 (98%), Positives = 374/379 (98%), Gaps = 1/379 (0%)
Frame = +2
Query: 5 PVTPPTA-QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 181
PV P +MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI
Sbjct: 559 PVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 618
Query: 182 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 361
KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK
Sbjct: 619 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 678
Query: 362 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 541
LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG
Sbjct: 679 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 738
Query: 542 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 721
TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF
Sbjct: 739 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 798
Query: 722 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 901
VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
Sbjct: 799 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 858
Query: 902 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 1081
QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF
Sbjct: 859 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 918
Query: 1082 DDPMVLELAKQDVVLNYPM 1138
DDPM+LELAKQDVVLNYPM
Sbjct: 919 DDPMLLELAKQDVVLNYPM 937
>ref|NP_004238.3| 116 kDa U5 small nuclear ribonucleoprotein component isoform a [Homo
sapiens].
Length = 972
Score = 748 bits (1931), Expect = 0.0
Identities = 372/379 (98%), Positives = 374/379 (98%), Gaps = 1/379 (0%)
Frame = +2
Query: 5 PVTPPTA-QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 181
PV P +MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI
Sbjct: 594 PVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDI 653
Query: 182 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 361
KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK
Sbjct: 654 KVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKK 713
Query: 362 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 541
LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG
Sbjct: 714 LGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWG 773
Query: 542 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 721
TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF
Sbjct: 774 TREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYF 833
Query: 722 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 901
VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
Sbjct: 834 VEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 893
Query: 902 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 1081
QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF
Sbjct: 894 QAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFF 953
Query: 1082 DDPMVLELAKQDVVLNYPM 1138
DDPM+LELAKQDVVLNYPM
Sbjct: 954 DDPMLLELAKQDVVLNYPM 972
>ref|NP_001952.1| elongation factor 2 [Homo sapiens].
Length = 858
Score = 327 bits (838), Expect = 1e-89
Identities = 162/354 (45%), Positives = 231/354 (65%), Gaps = 1/354 (0%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
++++GL+++ KS P + +EESGEH+I G GEL+L+ + DL + ++ I IK +DPVV+
Sbjct: 519 KLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVS 578
Query: 206 FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK 385
+ ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + K
Sbjct: 579 YRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEK 638
Query: 386 YDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD 565
Y+WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+
Sbjct: 639 YEWDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCE 694
Query: 566 ELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD 745
E +R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P
Sbjct: 695 ENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQ 754
Query: 746 CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVF 925
V +Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF
Sbjct: 755 VVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVF 814
Query: 926 HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV-SISKFFD 1084
HWQI+PGDP D S RP + + +TR+RKGL E + ++ F D
Sbjct: 815 DHWQILPGDPFDNS--SRP----------SQVVAETRKRKGLKEGIPALDNFLD 856
>ref|NP_001035700.1| elongation factor Tu GTP-binding domain-containing protein 1 isoform
2 [Homo sapiens].
Length = 1069
Score = 117 bits (292), Expect = 3e-26
Identities = 116/471 (24%), Positives = 197/471 (41%), Gaps = 129/471 (27%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DL++ +++I I V++P++
Sbjct: 581 QLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIHISVSEPIIP 640
Query: 206 FCETVVETSSLKCFAE------------------------------------TPNKKNKI 277
F ET+ + + E TPNK +
Sbjct: 641 FRETITKPPKVDMVNEEIGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATL 700
Query: 278 TMIAEPLEKGLAE------DIENEVVQITWN--------------RKKLGEFFQTKYDWD 397
++ A PL + + + D+ + Q+T + ++K+ E F+ K +
Sbjct: 701 SVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWE-FKGKLEQH 759
Query: 398 LLAAR------SIWAFGPDATGPNILV-------DDTLPSEVDKALLGSVK-----DSIV 523
L R IW+FGP GPNILV + DKA + + +SIV
Sbjct: 760 LTGRRWRNIVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPADKASKEASRYRDLGNSIV 819
Query: 524 QGFQWGTREGPLCDELIRNVKFKI---------------LDAVVAQEPLHRGGGQIIPTA 658
GFQ T GP+C+E + V F + L +E GG
Sbjct: 820 SGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQGASDLAKEGQEENETCSGGNENQEL 879
Query: 659 RRVVYSAFLMATPRLME--------PY-------------YFVEVQAPADCVSAVYT--- 766
+ AF T + E P+ Y ++V+ P ++A+YT
Sbjct: 880 QDGCSEAFEKRTSQKGESPLTDCYGPFSGQLIATMKEACRYALQVK-PQRLMAAMYTCDI 938
Query: 767 ------------VLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAF 910
VL++R G V Q+ G+ ++ IKA +P +SFGF ++R T G A
Sbjct: 939 MATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLAS 998
Query: 911 SLSVFHHWQIVPGDPL----DKSIVIRPLEPQPAPHLAREFMIKTRRRKGL 1051
VF HW+I+P DP + + E + + AR++M R+RKGL
Sbjct: 999 PQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1049
>ref|NP_078856.4| elongation factor Tu GTP-binding domain-containing protein 1 isoform
1 [Homo sapiens].
Length = 1120
Score = 117 bits (292), Expect = 3e-26
Identities = 116/471 (24%), Positives = 197/471 (41%), Gaps = 129/471 (27%)
Frame = +2
Query: 26 QMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT 205
Q++ G++ +N++ P + ++E+GEHV++ GE++L + DL++ +++I I V++P++
Sbjct: 632 QLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIHISVSEPIIP 691
Query: 206 FCETVVETSSLKCFAE------------------------------------TPNKKNKI 277
F ET+ + + E TPNK +
Sbjct: 692 FRETITKPPKVDMVNEEIGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATL 751
Query: 278 TMIAEPLEKGLAE------DIENEVVQITWN--------------RKKLGEFFQTKYDWD 397
++ A PL + + + D+ + Q+T + ++K+ E F+ K +
Sbjct: 752 SVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWE-FKGKLEQH 810
Query: 398 LLAAR------SIWAFGPDATGPNILV-------DDTLPSEVDKALLGSVK-----DSIV 523
L R IW+FGP GPNILV + DKA + + +SIV
Sbjct: 811 LTGRRWRNIVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPADKASKEASRYRDLGNSIV 870
Query: 524 QGFQWGTREGPLCDELIRNVKFKI---------------LDAVVAQEPLHRGGGQIIPTA 658
GFQ T GP+C+E + V F + L +E GG
Sbjct: 871 SGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQGASDLAKEGQEENETCSGGNENQEL 930
Query: 659 RRVVYSAFLMATPRLME--------PY-------------YFVEVQAPADCVSAVYT--- 766
+ AF T + E P+ Y ++V+ P ++A+YT
Sbjct: 931 QDGCSEAFEKRTSQKGESPLTDCYGPFSGQLIATMKEACRYALQVK-PQRLMAAMYTCDI 989
Query: 767 ------------VLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAF 910
VL++R G V Q+ G+ ++ IKA +P +SFGF ++R T G A
Sbjct: 990 MATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLAS 1049
Query: 911 SLSVFHHWQIVPGDPL----DKSIVIRPLEPQPAPHLAREFMIKTRRRKGL 1051
VF HW+I+P DP + + E + + AR++M R+RKGL
Sbjct: 1050 PQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100
>ref|NP_733792.1| ribosome-releasing factor 2, mitochondrial isoform 2 [Homo sapiens].
Length = 732
Score = 53.5 bits (127), Expect = 4e-07
Identities = 65/308 (21%), Positives = 129/308 (41%), Gaps = 4/308 (1%)
Frame = +2
Query: 41 LRKVNKSYPSLTTKVE-ESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCET 217
L+ + + PSL +++ +SG+ V+ G GEL+++ ++HD K ++ + V + ET
Sbjct: 462 LKCLQREDPSLKVRLDPDSGQTVLCGMGELHIE-IIHDRIKREYGLETYLGPLQVAYRET 520
Query: 218 VVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWD 397
++ + + L++ L + V++
Sbjct: 521 ILNS----------------VRATDTLDRTLGDKRHLVTVEVE----------------- 547
Query: 398 LLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIR 577
AR I + + +++ +++ LL +++I G +GPL I+
Sbjct: 548 ---ARPI-----ETSSVMPVIEFEYAESINEGLLKVSQEAIENGIHSACLQGPLLGSPIQ 599
Query: 578 NVKFKILDAVVAQEPLHRGGGQIIPTA--RRVVYSAFLMATPRLMEPYYFVEVQAPADCV 751
+V + + H G + +A R V A A +++EP +EV D +
Sbjct: 600 DVAITLHSLTI-----HPGTSTTMISACVSRCVQKALKKADKQVLEPLMNLEVTVARDYL 654
Query: 752 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQA-FSLSVFH 928
S V LA+RRG++ + + + + F+P + G+ T LRT T G A F+L +
Sbjct: 655 SPVLADLAQRRGNIQEIQTRQDNKV--VIGFVPLAEIMGYSTVLRTLTSGSATFALELST 712
Query: 929 HWQIVPGD 952
+ + P D
Sbjct: 713 YQAMNPQD 720
>ref|NP_115756.2| ribosome-releasing factor 2, mitochondrial isoform 1 [Homo sapiens].
Length = 779
Score = 53.5 bits (127), Expect = 4e-07
Identities = 65/308 (21%), Positives = 129/308 (41%), Gaps = 4/308 (1%)
Frame = +2
Query: 41 LRKVNKSYPSLTTKVE-ESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCET 217
L+ + + PSL +++ +SG+ V+ G GEL+++ ++HD K ++ + V + ET
Sbjct: 509 LKCLQREDPSLKVRLDPDSGQTVLCGMGELHIE-IIHDRIKREYGLETYLGPLQVAYRET 567
Query: 218 VVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWD 397
++ + + L++ L + V++
Sbjct: 568 ILNS----------------VRATDTLDRTLGDKRHLVTVEVE----------------- 594
Query: 398 LLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIR 577
AR I + + +++ +++ LL +++I G +GPL I+
Sbjct: 595 ---ARPI-----ETSSVMPVIEFEYAESINEGLLKVSQEAIENGIHSACLQGPLLGSPIQ 646
Query: 578 NVKFKILDAVVAQEPLHRGGGQIIPTA--RRVVYSAFLMATPRLMEPYYFVEVQAPADCV 751
+V + + H G + +A R V A A +++EP +EV D +
Sbjct: 647 DVAITLHSLTI-----HPGTSTTMISACVSRCVQKALKKADKQVLEPLMNLEVTVARDYL 701
Query: 752 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQA-FSLSVFH 928
S V LA+RRG++ + + + + F+P + G+ T LRT T G A F+L +
Sbjct: 702 SPVLADLAQRRGNIQEIQTRQDNKV--VIGFVPLAEIMGYSTVLRTLTSGSATFALELST 759
Query: 929 HWQIVPGD 952
+ + P D
Sbjct: 760 YQAMNPQD 767
>ref|NP_079272.4| elongation factor G, mitochondrial precursor [Homo sapiens].
Length = 751
Score = 52.8 bits (125), Expect = 6e-07
Identities = 40/148 (27%), Positives = 67/148 (45%)
Frame = +2
Query: 461 DDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGG 640
D+T S + K + +V+ +GF +GPL + ++F + D A +
Sbjct: 571 DETFGSNIPKQFVPAVE----KGFLDACEKGPLSGHKLSGLRFVLQDG--AHHMVDSNEI 624
Query: 641 QIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGS 820
I + A AT ++EP VEV AP + V + RR G +T +
Sbjct: 625 SFIRAGEGALKQALANATLCILEPIMAVEVVAPNEFQGQVIAGINRRHGVITGQDGV--E 682
Query: 821 PLYTIKAFIPAIDSFGFETDLRTHTQGQ 904
+T+ A +P D FG+ T+LR+ T+G+
Sbjct: 683 DYFTLYADVPLNDMFGYSTELRSCTEGK 710
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,584,090
Number of extensions: 1751490
Number of successful extensions: 7122
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7093
Number of HSP's successfully gapped: 10
Length of query: 402
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 297
Effective length of database: 14,835,944
Effective search space: 4406275368
Effective search space used: 4406275368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013706
(1206 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 311 5e-82
>Sscrofa_Chr12
|| Length = 63588571
Score = 311 bits (157), Expect = 5e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 781 caggggacatgtgactcaggatgctcccatccctggctcccctctctacaccatcaaagc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18758384 caggggacatgtgactcaggatgctcccatccctggctcccctctctacaccatcaaagc 18758443
Query: 841 tttcatcccggccatcgactcttttggcttcgagactgatctgcggactcacacgcaggg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18758444 tttcatcccggccatcgactcttttggcttcgagactgatctgcggactcacacgcaggg 18758503
Query: 901 gcaggccttttccttgtctgtcttccaccattggcag 937
|||||||||||||||||||||||||||||||||||||
Sbjct: 18758504 gcaggccttttccttgtctgtcttccaccattggcag 18758540
Score = 276 bits (139), Expect = 3e-71
Identities = 158/163 (96%), Gaps = 1/163 (0%)
Strand = Plus / Plus
Query: 1044 agggcctgagtgaggacgtgagcatcagcaagttcttcgatgatcctatggtgctggagc 1103
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 18759168 agggcctgagtgaggacgtgagcatcagcaagttcttcgatgatcctatgttgctggagc 18759227
Query: 1104 tcgccaagcaggatgttgtgctcaattaccccatgtgagcgctggactcctggcagctcc 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18759228 tcgccaagcaggatgttgtgctcaattaccccatgtgagcgctggactcctggcagctcc 18759287
Query: 1164 tgtgccccggcgcggggccgcttcttggactcgagctgggacc 1206
|||| ||| ||||||||| ||||| ||||||||||||||||||
Sbjct: 18759288 tgtg-ccctgcgcggggcggcttcctggactcgagctgggacc 18759329
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 352 caggaagaagctgggcgagttcttccagaccaagtacgactgggatctgctggctgcccg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18756139 caggaagaagctgggcgagttcttccagaccaagtacgactgggatctgctggctgcccg 18756198
Query: 412 ttccatctgggcttttggccctgatgccactggccccaacatcctggtggatgacaccct 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18756199 ttccatctgggcttttggccctgatgccactggccccaacatcctggtggatgacaccct 18756258
Query: 472 gccctctgaggt 483
||||||||||||
Sbjct: 18756259 gccctctgaggt 18756270
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 570 tgattcgaaatgtcaagtttaagatcctggatgcagtggttgcccaggagcccctgcatc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18757624 tgattcgaaatgtcaagtttaagatcctggatgcagtggttgcccaggagcccctgcatc 18757683
Query: 630 ggggcgggggccaaatcatccccacagccaggagagttgtctattctgccttcctcatgg 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18757684 ggggcgggggccaaatcatccccacagccaggagagttgtctattctgccttcctcatgg 18757743
Score = 214 bits (108), Expect = 8e-53
Identities = 111/112 (99%)
Strand = Plus / Plus
Query: 935 cagatcgtacccggtgatcctctggacaagagcattgtcatccgccccttggagccacag 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18758716 cagatcgtacccggtgatcctctggacaagagcattgtcatccgccccttggagccacag 18758775
Query: 995 ccagctcctcacctggcccgggagttcatgatcaaaacccgtcgcaggaagg 1046
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 18758776 ccagctcctcacctggcccgagagttcatgatcaaaacccgtcgcaggaagg 18758827
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 81 aggtggaagagtctggcgagcacgtgattctgggtactggggagctctacctggattgtg 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18753422 aggtggaagagtctggcgagcacgtgattctgggtactggggagctctacctggattgtg 18753481
Query: 141 tgatgcacgacttgcggaagatgtactcggagatagacatcaaggt 186
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18753482 tgatgcacgacttgcggaagatgtactcggagatagacatcaaggt 18753527
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 688 ggccactcctcgtctgatggagccctactactttgtagaggtccaggcccctgcagactg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18757848 ggccactcctcgtctgatggagccctactactttgtagaggtccaggcccctgcagactg 18757907
Query: 748 tgtctctgccgtctacaccgtcctggccaggcgcagg 784
|||||||||||||||||||||||||||||||||||||
Sbjct: 18757908 tgtctctgccgtctacaccgtcctggccaggcgcagg 18757944
Score = 178 bits (90), Expect = 5e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 480 aggtggacaaggctcttctcggctcggtgaaggacagcatcgttcaaggtttccagtggg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18756466 aggtggacaaggctcttctcggctcggtgaaggacagcatcgttcaaggtttccagtggg 18756525
Query: 540 gaactagggaggggcccctctgtgacgagt 569
||||||||||||||||||||||||||||||
Sbjct: 18756526 gaactagggaggggcccctctgtgacgagt 18756555
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 268 gaacaagatcaccatgattgctgagccccttgagaagggcctggccgaggacatagagaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18755857 gaacaagatcaccatgattgctgagccccttgagaagggcctggccgaggacatagagaa 18755916
Query: 328 cgaggtggtgcagatcacatggaacagg 355
||||||||||||||||||||||||||||
Sbjct: 18755917 cgaggtggtgcagatcacatggaacagg 18755944
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 183 aggtggctgaccccgtggtcacgttttgtgagacagtagtggaaacgtcctccctcaagt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18754836 aggtggctgaccccgtggtcacgttttgtgagacagtagtggaaacgtcctccctcaagt 18754895
Query: 243 gctttgctgaaactcccaataagaag 268
||||||||||||||||||||||||||
Sbjct: 18754896 gctttgctgaaactcccaataagaag 18754921
Score = 119 bits (60), Expect = 4e-24
Identities = 74/76 (97%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 11 acccctccga-ctgccca-gatgctggacggcctgcgcaaggtcaacaagagctacccgt 68
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 18752711 acccctccgaactgcccaagatgctggacggcctgcgcaaggtcaacaagagctacccgt 18752770
Query: 69 cgctcaccaccaaggt 84
||||||||||||||||
Sbjct: 18752771 cgctcaccaccaaggt 18752786
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,793,276
Number of extensions: 176
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 11
Length of query: 1206
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1185
Effective length of database: 2,808,413,156
Effective search space: 3327969589860
Effective search space used: 3327969589860
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)