Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013707
(1471 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068880.1| telomeric repeat-binding factor 2-interactin... 624 e-179
>ref|NP_001068880.1| telomeric repeat-binding factor 2-interacting protein 1 [Bos taurus].
Length = 399
Score = 624 bits (1608), Expect = e-179
Identities = 330/401 (82%), Positives = 335/401 (83%)
Frame = +2
Query: 104 MAEAMDLGKDPNGPTHSSTLFLREDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG 283
MAEAM+LGKDPNGPTHSSTLF+REDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG
Sbjct: 1 MAEAMELGKDPNGPTHSSTLFVREDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG 60
Query: 284 AVLLAQPGEAAAEASGDFISTQYILDCVERNEKLELEAYRLGPAPADDQAPETXXXXXXX 463
AVLLAQPGEAAAEASGDFISTQYILDCVERNEKLELEAYRLGPAPA QAPET
Sbjct: 61 AVLLAQPGEAAAEASGDFISTQYILDCVERNEKLELEAYRLGPAPAAYQAPET-KPGVLA 119
Query: 464 XXXXXXXSEPQPHAGRIGFTDADDVAILTYVKEHARSPSSVTGNALWKAMEKSSLTQHSW 643
EPQ AGR+ FTDADDVAI+TYVKEHARS SSVTGNALWKAMEKSSLTQHSW
Sbjct: 120 GGVAAAEPEPQSQAGRMVFTDADDVAIITYVKEHARSASSVTGNALWKAMEKSSLTQHSW 179
Query: 644 QSLKDRYLKRLRGQEHKYLLGEAPVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLPXXX 823
QS+KDRYLKRLRGQEHKYLLGEAPVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLP
Sbjct: 180 QSMKDRYLKRLRGQEHKYLLGEAPVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLPEEE 239
Query: 824 XXXXXXXXXXXXXXXMLVEATREFEEIVVDESPDFEIHITMCXXXXXXXXXXXXXXXXXX 1003
MLVEATREFEEIVVDESPDFEIHITMC
Sbjct: 240 FEKEEIKENEAAVKKMLVEATREFEEIVVDESPDFEIHITMC-DDDPCTPEEDSETQPDE 298
Query: 1004 XXXXXXXXSAPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQRADG 1183
SAPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQRADG
Sbjct: 299 EEEEEEKVSAPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQRADG 358
Query: 1184 YPIWSRQDDLDLQKDDEGTRDALVKKFGAQNVARRIEFRKK 1306
YPIWSRQDDLDLQKDDE TRDALVKKFGAQNVARRIEFRKK
Sbjct: 359 YPIWSRQDDLDLQKDDEATRDALVKKFGAQNVARRIEFRKK 399
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,857,336
Number of extensions: 1146412
Number of successful extensions: 3343
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3332
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 384
Effective length of database: 14,174,046
Effective search space: 5442833664
Effective search space used: 5442833664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013707
(1471 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536776.2| PREDICTED: similar to Telomeric repeat binding ... 607 e-173
>ref|XP_536776.2| PREDICTED: similar to Telomeric repeat binding factor 2 interacting
protein 1 (TRF2-interacting telomeric protein Rap1)
(hRap1) [Canis familiaris].
Length = 403
Score = 607 bits (1564), Expect = e-173
Identities = 324/405 (80%), Positives = 331/405 (81%), Gaps = 4/405 (0%)
Frame = +2
Query: 104 MAEAMDLGKDPNGPTHSSTLFLREDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG 283
MAEAMDLGKDPNGPTHSSTLF+REDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG
Sbjct: 1 MAEAMDLGKDPNGPTHSSTLFVREDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG 60
Query: 284 AVLLAQPGEAAAEASGDFISTQYILDCVERNEKLELEAYRLGPAPADDQAPETXXXXXXX 463
AVLLAQPGEAAAEASGDFISTQYILDCVERNE+L+LEAYRLG A QAPET
Sbjct: 61 AVLLAQPGEAAAEASGDFISTQYILDCVERNERLDLEAYRLGSAAG--QAPETKPGAQAE 118
Query: 464 XXXXXXXS---EPQPHAGRIGFTDADDVAILTYVKEHARSPSSVTGNALWKAMEKSSLTQ 634
+ EPQP AGRI FTDADDVAILTYVKE+ARSPSSVTG ALWKAMEKSSLT+
Sbjct: 119 GSAAAAAAAQPEPQPLAGRIAFTDADDVAILTYVKENARSPSSVTGTALWKAMEKSSLTE 178
Query: 635 HSWQSLKDRYLKRLRGQEHKYLLGEAPVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLP 814
HSWQSLKDRYLK LRGQEHKYLLG+APVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLP
Sbjct: 179 HSWQSLKDRYLKHLRGQEHKYLLGDAPVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLP 238
Query: 815 XXXXXXXXXXXXXXXXXXMLVEATREFEEIVVDESPDFEIHITMC-XXXXXXXXXXXXXX 991
MLVEATREFEEIVVDESPDFEIHITMC
Sbjct: 239 EEEYVKEEIKENDEAVKKMLVEATREFEEIVVDESPDFEIHITMCDDDPPTPEEDSETQP 298
Query: 992 XXXXXXXXXXXXSAPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQ 1171
S PEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQ
Sbjct: 299 DEDEEEEEEEKVSPPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQ 358
Query: 1172 RADGYPIWSRQDDLDLQKDDEGTRDALVKKFGAQNVARRIEFRKK 1306
RADGYPIWSRQDDLDLQKDDE RDALVKKFGAQNVARRIEFRKK
Sbjct: 359 RADGYPIWSRQDDLDLQKDDEDARDALVKKFGAQNVARRIEFRKK 403
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,713,462
Number of extensions: 1141548
Number of successful extensions: 3608
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3599
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 383
Effective length of database: 15,307,552
Effective search space: 5862792416
Effective search space used: 5862792416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013707
(1471 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126905.1| PREDICTED: telomeric repeat-binding factor 2... 661 0.0
>ref|XP_003126905.1| PREDICTED: telomeric repeat-binding factor 2-interacting protein 1
[Sus scrofa].
Length = 401
Score = 661 bits (1705), Expect = 0.0
Identities = 343/401 (85%), Positives = 343/401 (85%)
Frame = +2
Query: 104 MAEAMDLGKDPNGPTHSSTLFLREDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG 283
MAEAMDLGKDPNGPTHSSTLFLREDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG
Sbjct: 1 MAEAMDLGKDPNGPTHSSTLFLREDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG 60
Query: 284 AVLLAQPGEAAAEASGDFISTQYILDCVERNEKLELEAYRLGPAPADDQAPETXXXXXXX 463
AVLLAQPGEAAAEASGDFISTQYILDCVERNEKLELEAYRLGPAPADDQAPET
Sbjct: 61 AVLLAQPGEAAAEASGDFISTQYILDCVERNEKLELEAYRLGPAPADDQAPETKPGGQAG 120
Query: 464 XXXXXXXSEPQPHAGRIGFTDADDVAILTYVKEHARSPSSVTGNALWKAMEKSSLTQHSW 643
SEPQPHAGRIGFTDADDVAILTYVKEHARSPSSVTGNALWKAMEKSSLTQHSW
Sbjct: 121 GGAAAAESEPQPHAGRIGFTDADDVAILTYVKEHARSPSSVTGNALWKAMEKSSLTQHSW 180
Query: 644 QSLKDRYLKRLRGQEHKYLLGEAPVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLPXXX 823
QSLKDRYLKRLRGQEHKYLLGEAPVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLP
Sbjct: 181 QSLKDRYLKRLRGQEHKYLLGEAPVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLPEEE 240
Query: 824 XXXXXXXXXXXXXXXMLVEATREFEEIVVDESPDFEIHITMCXXXXXXXXXXXXXXXXXX 1003
MLVEATREFEEIVVDESPDFEIHITMC
Sbjct: 241 FVKEEIKENEEAVKKMLVEATREFEEIVVDESPDFEIHITMCDDDPPTPEEDSETQPDEE 300
Query: 1004 XXXXXXXXSAPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQRADG 1183
SAPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQRADG
Sbjct: 301 EEEEEEKVSAPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQRADG 360
Query: 1184 YPIWSRQDDLDLQKDDEGTRDALVKKFGAQNVARRIEFRKK 1306
YPIWSRQDDLDLQKDDEGTRDALVKKFGAQNVARRIEFRKK
Sbjct: 361 YPIWSRQDDLDLQKDDEGTRDALVKKFGAQNVARRIEFRKK 401
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,392,400
Number of extensions: 805580
Number of successful extensions: 2174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2165
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 387
Effective length of database: 8,779,541
Effective search space: 3397682367
Effective search space used: 3397682367
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013707
(1471 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065609.2| telomeric repeat-binding factor 2-interacting p... 561 e-160
>ref|NP_065609.2| telomeric repeat-binding factor 2-interacting protein 1 [Mus
musculus].
Length = 393
Score = 561 bits (1446), Expect = e-160
Identities = 299/402 (74%), Positives = 313/402 (77%), Gaps = 1/402 (0%)
Frame = +2
Query: 104 MAEAMDLGKDPNGPTHSSTLFLREDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG 283
MAEAMDLGKDPNGPTHSSTLF+REDGS+MSFYVRPS AKRRLSTLILHGGGT+CRVQEPG
Sbjct: 1 MAEAMDLGKDPNGPTHSSTLFVREDGSAMSFYVRPSSAKRRLSTLILHGGGTVCRVQEPG 60
Query: 284 AVLLAQPGEAAAEASGDFISTQYILDCVERNEKLELEAYRLG-PAPADDQAPETXXXXXX 460
AVLLAQPGEA AEASGDFISTQYILDCV+RNEKL+LEAYRLG A D P
Sbjct: 61 AVLLAQPGEALAEASGDFISTQYILDCVDRNEKLDLEAYRLGLTEQASDPKPGASTEGST 120
Query: 461 XXXXXXXXSEPQPHAGRIGFTDADDVAILTYVKEHARSPSSVTGNALWKAMEKSSLTQHS 640
EPQP GRI +TDA+DVAILTYVKE+ARSPSSVTGNALWKAMEKSSLTQHS
Sbjct: 121 EP-------EPQPLTGRIAYTDAEDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHS 173
Query: 641 WQSLKDRYLKRLRGQEHKYLLGEAPVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLPXX 820
WQSLKDRYLK LRGQEHKYLLG APVSPSSQKLKRKAEQDPEAADSGEPQNKR PDLP
Sbjct: 174 WQSLKDRYLKHLRGQEHKYLLGNAPVSPSSQKLKRKAEQDPEAADSGEPQNKRAPDLPEE 233
Query: 821 XXXXXXXXXXXXXXXXMLVEATREFEEIVVDESPDFEIHITMCXXXXXXXXXXXXXXXXX 1000
+ EA EF E VVDESPDFEIHITMC
Sbjct: 234 ECVKGEIKENGEADNKLFEEAAPEFGEAVVDESPDFEIHITMC--DGDPPTPEEDSETQP 291
Query: 1001 XXXXXXXXXSAPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQRAD 1180
S EVG AIK+IRQLMEKFNLDLSTVTQA LKNSGELEATSSFLESG+R D
Sbjct: 292 DEEEEEPKVSTQEVGTAIKVIRQLMEKFNLDLSTVTQALLKNSGELEATSSFLESGRRPD 351
Query: 1181 GYPIWSRQDDLDLQKDDEGTRDALVKKFGAQNVARRIEFRKK 1306
GYPIW RQDDLDLQKDD+ T++ALVKKFGAQNVARRIEFRKK
Sbjct: 352 GYPIWCRQDDLDLQKDDDDTKNALVKKFGAQNVARRIEFRKK 393
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,689,912
Number of extensions: 928134
Number of successful extensions: 2900
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2895
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 385
Effective length of database: 12,463,779
Effective search space: 4798554915
Effective search space used: 4798554915
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013707
(1471 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061848.2| telomeric repeat-binding factor 2-interacting p... 605 e-173
>ref|NP_061848.2| telomeric repeat-binding factor 2-interacting protein 1 [Homo
sapiens].
Length = 399
Score = 605 bits (1560), Expect = e-173
Identities = 318/402 (79%), Positives = 329/402 (81%), Gaps = 1/402 (0%)
Frame = +2
Query: 104 MAEAMDLGKDPNGPTHSSTLFLREDGSSMSFYVRPSPAKRRLSTLILHGGGTLCRVQEPG 283
MAEAMDLGKDPNGPTHSSTLF+R+DGSSMSFYVRPSPAKRRLSTLILHGGGT+CRVQEPG
Sbjct: 1 MAEAMDLGKDPNGPTHSSTLFVRDDGSSMSFYVRPSPAKRRLSTLILHGGGTVCRVQEPG 60
Query: 284 AVLLAQPGEAAAEASGDFISTQYILDCVERNEKLELEAYRLGPAPADDQAPETXXXXXXX 463
AVLLAQPGEA AEASGDFISTQYILDCVERNE+LELEAYRLGPA A D E
Sbjct: 61 AVLLAQPGEALAEASGDFISTQYILDCVERNERLELEAYRLGPASAADTGSEAKPGALAE 120
Query: 464 XXXXXXXSEPQPHAGRIGFTDADDVAILTYVKEHARSPSSVTGNALWKAMEKSSLTQHSW 643
EPQ HAGRI FTDADDVAILTYVKE+ARSPSSVTGNALWKAMEKSSLTQHSW
Sbjct: 121 GAAEP---EPQRHAGRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSW 177
Query: 644 QSLKDRYLKRLRGQEHKYLLGEAPVSPSSQKLKRKAEQDPEAADSGEPQNKRTPDLPXXX 823
QSLKDRYLK LRGQEHKYLLG+APVSPSSQKLKRKAE+DPEAADSGEPQNKRTPDLP
Sbjct: 178 QSLKDRYLKHLRGQEHKYLLGDAPVSPSSQKLKRKAEEDPEAADSGEPQNKRTPDLPEEE 237
Query: 824 XXXXXXXXXXXXXXXMLVEATREFEEIVVDES-PDFEIHITMCXXXXXXXXXXXXXXXXX 1000
MLVEATREFEE+VVDES PDFEIHITMC
Sbjct: 238 YVKEEIQENEEAVKKMLVEATREFEEVVVDESPPDFEIHITMCDDDPPTPEEDSETQPDE 297
Query: 1001 XXXXXXXXXSAPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSSFLESGQRAD 1180
S PEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATS+FL SGQRAD
Sbjct: 298 EEEEEEEKVSQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRAD 357
Query: 1181 GYPIWSRQDDLDLQKDDEGTRDALVKKFGAQNVARRIEFRKK 1306
GYPIWSRQDD+DLQKDDE TR+ALVKKFGAQNVARRIEFRKK
Sbjct: 358 GYPIWSRQDDIDLQKDDEDTREALVKKFGAQNVARRIEFRKK 399
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,677,259
Number of extensions: 1104906
Number of successful extensions: 3295
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3285
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 383
Effective length of database: 14,770,016
Effective search space: 5656916128
Effective search space used: 5656916128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013707
(1471 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 880 0.0
Sscrofa_Chr08 335 4e-89
>Sscrofa_Chr06
|| Length = 157765593
Score = 880 bits (444), Expect = 0.0
Identities = 444/444 (100%)
Strand = Plus / Minus
Query: 1 catttggggccagcagccgcggcgtctggtacgttacctcaggcagtggggctccgtgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11898341 catttggggccagcagccgcggcgtctggtacgttacctcaggcagtggggctccgtgcg 11898282
Query: 61 ccagacgctcgttagggggcagctcttccgctgcgcgttcgcaatggcggaggcaatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11898281 ccagacgctcgttagggggcagctcttccgctgcgcgttcgcaatggcggaggcaatgga 11898222
Query: 121 tttgggcaaagaccccaatgggcctacccattcgtcgactcttttcctgagggaggatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11898221 tttgggcaaagaccccaatgggcctacccattcgtcgactcttttcctgagggaggatgg 11898162
Query: 181 cagctccatgtccttctacgtgcgtcccagtccggcgaagcgccggctctcgacgctcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11898161 cagctccatgtccttctacgtgcgtcccagtccggcgaagcgccggctctcgacgctcat 11898102
Query: 241 cctgcacggcggcggcaccctgtgccgggtgcaggagccgggggccgtgctgctggccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11898101 cctgcacggcggcggcaccctgtgccgggtgcaggagccgggggccgtgctgctggccca 11898042
Query: 301 gcccggggaggcggcggccgaggcctcgggcgacttcatctccacgcagtacatcctgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11898041 gcccggggaggcggcggccgaggcctcgggcgacttcatctccacgcagtacatcctgga 11897982
Query: 361 ctgcgtggagcgcaacgagaagctcgagctggaggcctaccggctgggcccggctccggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897981 ctgcgtggagcgcaacgagaagctcgagctggaggcctaccggctgggcccggctccggc 11897922
Query: 421 ggacgaccaggccccagagacgaa 444
||||||||||||||||||||||||
Sbjct: 11897921 ggacgaccaggccccagagacgaa 11897898
Score = 868 bits (438), Expect = 0.0
Identities = 444/446 (99%)
Strand = Plus / Minus
Query: 1026 tttctgcaccagaggtgggagctgccattaagatcatccggcagttaatggaaaagttta 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11889548 tttctgcaccagaggtgggagctgccattaagatcatccggcagttaatggaaaagttta 11889489
Query: 1086 acttggatctgtcaacagttacacaggccttcctaaaaaatagtggtgagctggaggcta 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11889488 acttggatctgtcaacagttacacaggccttcctaaaaaatagtggtgagctggaggcta 11889429
Query: 1146 cttcctcctttttagagtctgggcagagggctgatggatatcccatttggtcccgacagg 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11889428 cttcctcctttttagagtctgggcagagggctgatggatatcccatttggtcccgacagg 11889369
Query: 1206 atgacttagatttgcaaaaagatgacgagggtacccgagatgcattggtcaaaaaatttg 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11889368 atgacttagatttgcaaaaagatgacgagggtacccgagatgcattggtcaaaaaatttg 11889309
Query: 1266 gtgctcagaatgtagctcggaggattgaatttcgaaagaaataattggcaagataatgag 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11889308 gtgctcagaatgtagctcggaggattgaatttcgaaagaaataattggcaagataatgag 11889249
Query: 1326 agaagaagaaagatttgatggataaggtgttaaaatttgtgactgttgaacttcagagat 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11889248 agaagaagaaagatttgatggataaggtgttaaaatttgtgactgttgaacttcagagat 11889189
Query: 1386 ttttacattggagccgacacttatcttttgaacaatgctgctgttgctctatgagtccta 1445
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11889188 ttttacattggagccgacacttatcttttgaccaatgctgctgttgctctatgagtccta 11889129
Query: 1446 gattttgtagcccagtagagttgcgt 1471
|||||||||||| |||||||||||||
Sbjct: 11889128 gattttgtagccaagtagagttgcgt 11889103
Score = 595 bits (300), Expect = e-167
Identities = 300/300 (100%)
Strand = Plus / Minus
Query: 483 agtccgagccgcagccgcacgcggggcggatcggcttcacggacgcggacgacgtggcca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897859 agtccgagccgcagccgcacgcggggcggatcggcttcacggacgcggacgacgtggcca 11897800
Query: 543 tcttgacctacgtgaaggaacatgcccgctcgcccagctcggtcaccggcaatgccttgt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897799 tcttgacctacgtgaaggaacatgcccgctcgcccagctcggtcaccggcaatgccttgt 11897740
Query: 603 ggaaagcgatggagaagagctcgctcacccagcattcgtggcagtccctgaaggaccgct 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897739 ggaaagcgatggagaagagctcgctcacccagcattcgtggcagtccctgaaggaccgct 11897680
Query: 663 acctcaagcgcctacggggccaggagcataagtacctgctgggggaggcccccgtgagcc 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897679 acctcaagcgcctacggggccaggagcataagtacctgctgggggaggcccccgtgagcc 11897620
Query: 723 cttcctcgcagaaactcaagcggaaagctgagcaagaccccgaggctgctgatagcgggg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897619 cttcctcgcagaaactcaagcggaaagctgagcaagaccccgaggctgctgatagcgggg 11897560
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 782 gaaccacagaataagaggactccagacttgcctgaggaagaatttgtgaaggaagagatt 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11892253 gaaccacagaataagaggactccagacttgcctgaggaagaatttgtgaaggaagagatt 11892194
Query: 842 aaagagaatgaagaagcggtcaaaaagatgcttgtagaagctacccgggagtttgaggag 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11892193 aaagagaatgaagaagcggtcaaaaagatgcttgtagaagctacccgggagtttgaggag 11892134
Query: 902 attgtggt 909
||||||||
Sbjct: 11892133 attgtggt 11892126
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 907 ggtggacgagagccctgattttgaaatacacataacaatgtgtgatgatgatccacccac 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11889667 ggtggacgagagccctgattttgaaatacacataacaatgtgtgatgatgatccacccac 11889608
Query: 967 acctgaggaagactcagaaacacagcctgat 997
|||||||||||||||||||||||||||||||
Sbjct: 11889607 acctgaggaagactcagaaacacagcctgat 11889577
>Sscrofa_Chr08
|| Length = 148491826
Score = 335 bits (169), Expect = 4e-89
Identities = 382/453 (84%), Gaps = 10/453 (2%)
Strand = Plus / Minus
Query: 1026 tttctgcaccagaggtgggagctgccattaagatcatccggcagttaatggaaaagttta 1085
||||||||||||| |||| | ||||| ||| ||||||| |||||| ||||||| ||||||
Sbjct: 135272340 tttctgcaccagacgtggaacctgcctttatgatcatctggcagtcaatggaacagttta 135272281
Query: 1086 acttggatctgtcaacagttacacaggccttcctaaaaaatagtggtgagctggaggcta 1145
||||||||||| ||||||||||||| || |||||||||| ||||||||| ||||||||||
Sbjct: 135272280 acttggatctgccaacagttacacaagctttcctaaaaattagtggtgaactggaggcta 135272221
Query: 1146 cttcctcctttttagagtctgggcagagggctgatggatatcccatttggtcccgacagg 1205
|||||||| ||||||||||||| |||||||||||||| ||| | |||||||||| |||||
Sbjct: 135272220 cttcctccattttagagtctggccagagggctgatgggtattctatttggtccccacagg 135272161
Query: 1206 atgacttagatttgcaaaaagatgacgagggtacccgagatgcattggtcaaaaaatttg 1265
||||||||||||||||||||||||| |||||||| | |||||| || ||||||||| ||
Sbjct: 135272160 atgacttagatttgcaaaaagatgatgagggtactcaagatgctttagtcaaaaaaattc 135272101
Query: 1266 gtgctcagaatgtagctcggaggattgaatttcgaaagaaataattggcaagataatgag 1325
|||||| |||||| | ||| |||| || | ||||||||| ||||||||||||| ||
Sbjct: 135272100 acgctcaggatgtagtgcaaagggttgagttccaaaagaaatatttggcaagataatcag 135272041
Query: 1326 agaagaagaaa------gatttgatggataaggtgttaaaa----tttgtgactgttgaa 1375
| ||||| ||| | |||| ||||||||||||||| ||||||||| ||||
Sbjct: 135272040 aaaagaaaaaaaaaaatggtttggcagataaggtgttaaaaaatgtttgtgactactgaa 135271981
Query: 1376 cttcagagatttttacattggagccgacacttatcttttgaacaatgctgctgttgctct 1435
||||||||||||| |||||||| | |||||| ||||||||| |||||||| ||||| |
Sbjct: 135271980 cttcagagattttgacattggacctgacactcatcttttgactaatgctgccattgctgt 135271921
Query: 1436 atgagtcctagattttgtagcccagtagagttg 1468
||||||||| ||||| ||||| || |||||||
Sbjct: 135271920 gtgagtcctatattttatagccaagcagagttg 135271888
Score = 89.7 bits (45), Expect = 4e-15
Identities = 97/113 (85%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 876 tagaagctacccgggagtttgaggagattgtggtggacgagagccctgattttgaaatac 935
||||||| ||| |||||||||||||||| |||||| | || ||||||||| ||||||
Sbjct: 135272477 tagaagccacctgggagtttgaggagatgtgggtggatgggacccctgattta-aaatac 135272419
Query: 936 acataacaatgtgtgatgatgatccacccacacctgaggaagactcagaaaca 988
||| |||| |||||||||| |||| |||||||||||||||| ||||||||||
Sbjct: 135272418 acagaacagtgtgtgatgacaatccccccacacctgaggaagtctcagaaaca 135272366
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,923,274
Number of extensions: 236
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 8
Length of query: 1471
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1450
Effective length of database: 2,808,413,156
Effective search space: 4072199076200
Effective search space used: 4072199076200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)