Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013711
(1168 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539785.1| PREDICTED: hypothetical protein XP_539785 [Cani... 436 e-122
>ref|XP_539785.1| PREDICTED: hypothetical protein XP_539785 [Canis familiaris].
Length = 348
Score = 436 bits (1120), Expect = e-122
Identities = 212/258 (82%), Positives = 223/258 (86%)
Frame = +3
Query: 393 MNNNATDLTIGFISSTVAIVLFGSNFVPLKKYDTGDGMFLQWVLCAAIWLVAVVVNLILH 572
M++N TDLTIGFI VA++LFGSNFVPLKKY+TGDGMFLQWVLCAAIW +A+VVNLILH
Sbjct: 1 MSSNGTDLTIGFICCFVAVLLFGSNFVPLKKYETGDGMFLQWVLCAAIWSIALVVNLILH 60
Query: 573 CPKFWPFAMVGGCIWATGNIAVVPXXXXXXXXXXXXXXXSFNALTGWASSRFGWFGMDAE 752
CPKFWPFAMVGGCIWATGNIAVVP SFN LTGWASSRFGWFGMDAE
Sbjct: 61 CPKFWPFAMVGGCIWATGNIAVVPVIKTIGLGLGILIWGSFNTLTGWASSRFGWFGMDAE 120
Query: 753 EVSKPLLNYIGAGLSIVSAFIFLFIKSEIPKSTCSVDTTPLITEHVINKTQDPDPHCSWV 932
EVS PLLNYIGAGLS+VSAFIFLFIKSEIP +TCSVDTTPL+TEHVIN +QDP P SWV
Sbjct: 121 EVSNPLLNYIGAGLSVVSAFIFLFIKSEIPNNTCSVDTTPLMTEHVINSSQDPCPDYSWV 180
Query: 933 DKLSTVQHRLVGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQNDLDYVFAHFS 1112
DKLS Q R VGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQ DLDYVFAHFS
Sbjct: 181 DKLSRAQQRTVGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQYDLDYVFAHFS 240
Query: 1113 GIFXHSTVYFLGYCIAMK 1166
GIF STVYFL YCIAMK
Sbjct: 241 GIFFTSTVYFLAYCIAMK 258
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,462,885
Number of extensions: 1368247
Number of successful extensions: 4226
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4222
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 284
Effective length of database: 15,374,224
Effective search space: 4366279616
Effective search space used: 4366279616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013711
(1168 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095459.1| transmembrane protein 144 [Bos taurus]. 454 e-128
>ref|NP_001095459.1| transmembrane protein 144 [Bos taurus].
Length = 348
Score = 454 bits (1169), Expect = e-128
Identities = 220/258 (85%), Positives = 232/258 (89%)
Frame = +3
Query: 393 MNNNATDLTIGFISSTVAIVLFGSNFVPLKKYDTGDGMFLQWVLCAAIWLVAVVVNLILH 572
M++NATDLT GFI+S VAIVLFGSNFVPLKKY+TGDGMFLQWVLCAAIWLVA+VVNLILH
Sbjct: 1 MSSNATDLTTGFIASIVAIVLFGSNFVPLKKYETGDGMFLQWVLCAAIWLVALVVNLILH 60
Query: 573 CPKFWPFAMVGGCIWATGNIAVVPXXXXXXXXXXXXXXXSFNALTGWASSRFGWFGMDAE 752
CPKFWPFAMVGGCIWATGNIAVVP SFNALTGWASSRFGWFGMDAE
Sbjct: 61 CPKFWPFAMVGGCIWATGNIAVVPIIKTIGLGLGILIWGSFNALTGWASSRFGWFGMDAE 120
Query: 753 EVSKPLLNYIGAGLSIVSAFIFLFIKSEIPKSTCSVDTTPLITEHVINKTQDPDPHCSWV 932
EV+KP+LNYIGAGLS+VSAFIFLFIKSEIP +T SVDTTPLI+EHVINKTQDPDP CSWV
Sbjct: 121 EVAKPVLNYIGAGLSVVSAFIFLFIKSEIPNNTYSVDTTPLISEHVINKTQDPDPDCSWV 180
Query: 933 DKLSTVQHRLVGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQNDLDYVFAHFS 1112
DKLST Q LVGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQNDLDY+FAHFS
Sbjct: 181 DKLSTAQSHLVGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQNDLDYIFAHFS 240
Query: 1113 GIFXHSTVYFLGYCIAMK 1166
GIF STVYFL YC+AMK
Sbjct: 241 GIFLTSTVYFLAYCVAMK 258
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,566,830
Number of extensions: 1336902
Number of successful extensions: 4365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4359
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,240,222
Effective search space: 4058463270
Effective search space used: 4058463270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013711
(1168 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129054.2| PREDICTED: transmembrane protein 144-like [S... 489 e-138
>ref|XP_003129054.2| PREDICTED: transmembrane protein 144-like [Sus scrofa].
Length = 417
Score = 489 bits (1259), Expect = e-138
Identities = 240/258 (93%), Positives = 240/258 (93%)
Frame = +3
Query: 393 MNNNATDLTIGFISSTVAIVLFGSNFVPLKKYDTGDGMFLQWVLCAAIWLVAVVVNLILH 572
MNNNATDLTIGFISSTVAIVLFGSNFVPLKKYDTGDGMFLQWVLCAAIWLVAVVVNLILH
Sbjct: 1 MNNNATDLTIGFISSTVAIVLFGSNFVPLKKYDTGDGMFLQWVLCAAIWLVAVVVNLILH 60
Query: 573 CPKFWPFAMVGGCIWATGNIAVVPXXXXXXXXXXXXXXXSFNALTGWASSRFGWFGMDAE 752
CPKFWPFAMVGGCIWATGNIAVVP SFNALTGWASSRFGWFGMDAE
Sbjct: 61 CPKFWPFAMVGGCIWATGNIAVVPIIKTIGLGLGLLIWGSFNALTGWASSRFGWFGMDAE 120
Query: 753 EVSKPLLNYIGAGLSIVSAFIFLFIKSEIPKSTCSVDTTPLITEHVINKTQDPDPHCSWV 932
EVSKPLLNYIGAGLSIVSAFIFLFIKSEIPKSTCSVDTTPLITEHVINKTQDPDPHCSWV
Sbjct: 121 EVSKPLLNYIGAGLSIVSAFIFLFIKSEIPKSTCSVDTTPLITEHVINKTQDPDPHCSWV 180
Query: 933 DKLSTVQHRLVGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQNDLDYVFAHFS 1112
DKLSTVQHRLVGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQNDLDYVFAHFS
Sbjct: 181 DKLSTVQHRLVGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQNDLDYVFAHFS 240
Query: 1113 GIFXHSTVYFLGYCIAMK 1166
GIF STVYFL YCIAMK
Sbjct: 241 GIFLTSTVYFLAYCIAMK 258
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,015,883
Number of extensions: 861125
Number of successful extensions: 2662
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2655
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 288
Effective length of database: 8,829,335
Effective search space: 2542848480
Effective search space used: 2542848480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013711
(1168 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081771.2| transmembrane protein 144 [Mus musculus]. 416 e-116
>ref|NP_081771.2| transmembrane protein 144 [Mus musculus].
Length = 348
Score = 416 bits (1068), Expect = e-116
Identities = 200/258 (77%), Positives = 220/258 (85%)
Frame = +3
Query: 393 MNNNATDLTIGFISSTVAIVLFGSNFVPLKKYDTGDGMFLQWVLCAAIWLVAVVVNLILH 572
M++NATDLT G++SS AI+LFGSNFVPLKKYDTGDGMFLQWVLCAAIWLVA+VVNLILH
Sbjct: 1 MSSNATDLTTGYLSSAAAILLFGSNFVPLKKYDTGDGMFLQWVLCAAIWLVALVVNLILH 60
Query: 573 CPKFWPFAMVGGCIWATGNIAVVPXXXXXXXXXXXXXXXSFNALTGWASSRFGWFGMDAE 752
CPKFWPFAM+GGCIWATGNIAVVP SFN LTGWASSRFGWFGMDAE
Sbjct: 61 CPKFWPFAMLGGCIWATGNIAVVPIIKTIGLGLGILIWGSFNTLTGWASSRFGWFGMDAE 120
Query: 753 EVSKPLLNYIGAGLSIVSAFIFLFIKSEIPKSTCSVDTTPLITEHVINKTQDPDPHCSWV 932
EVSKP+LNY+GAGLS+VSA FLFIKSEIP + S DTTPL+TE VIN+T+D SWV
Sbjct: 121 EVSKPMLNYVGAGLSVVSALTFLFIKSEIPNNPGSSDTTPLMTEPVINRTEDRSADSSWV 180
Query: 933 DKLSTVQHRLVGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQNDLDYVFAHFS 1112
D+LST HR+VGCSLAVISGILYGSTFVPIIYIKDHS+RNDS+YAGASQ DLDYVFAH S
Sbjct: 181 DRLSTTYHRIVGCSLAVISGILYGSTFVPIIYIKDHSRRNDSMYAGASQYDLDYVFAHSS 240
Query: 1113 GIFXHSTVYFLGYCIAMK 1166
GIF STVYF+ YC+AMK
Sbjct: 241 GIFLTSTVYFVAYCVAMK 258
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,585,223
Number of extensions: 1143476
Number of successful extensions: 3734
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3727
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 286
Effective length of database: 12,523,851
Effective search space: 3581821386
Effective search space used: 3581821386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013711
(1168 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060812.2| transmembrane protein 144 [Homo sapiens]. 442 e-124
>ref|NP_060812.2| transmembrane protein 144 [Homo sapiens].
Length = 345
Score = 442 bits (1136), Expect = e-124
Identities = 215/258 (83%), Positives = 227/258 (87%)
Frame = +3
Query: 393 MNNNATDLTIGFISSTVAIVLFGSNFVPLKKYDTGDGMFLQWVLCAAIWLVAVVVNLILH 572
M+NN DLT G+IS VAI+LFGSNFVPLKK+DTGDGMFLQWVLCAAIWLVA+VVNLILH
Sbjct: 1 MSNNGADLTFGYISCFVAILLFGSNFVPLKKFDTGDGMFLQWVLCAAIWLVALVVNLILH 60
Query: 573 CPKFWPFAMVGGCIWATGNIAVVPXXXXXXXXXXXXXXXSFNALTGWASSRFGWFGMDAE 752
CPKFWPFAM+GGCIWATGNIAVVP SFNALTGWASSRFGWFG+DAE
Sbjct: 61 CPKFWPFAMLGGCIWATGNIAVVPIIKTIGLGLGILIWGSFNALTGWASSRFGWFGLDAE 120
Query: 753 EVSKPLLNYIGAGLSIVSAFIFLFIKSEIPKSTCSVDTTPLITEHVINKTQDPDPHCSWV 932
EVS PLLNYIGAGLS+VSAFIFLFIKSEIP +TCS+DTTPLITEHVIN TQDP CSWV
Sbjct: 121 EVSNPLLNYIGAGLSVVSAFIFLFIKSEIPNNTCSMDTTPLITEHVINTTQDP---CSWV 177
Query: 933 DKLSTVQHRLVGCSLAVISGILYGSTFVPIIYIKDHSKRNDSIYAGASQNDLDYVFAHFS 1112
DKLSTV HR+VGCSLAVISG+LYGSTFVPIIYIKDHSKRNDSIYAGASQ DLDYVFAHFS
Sbjct: 178 DKLSTVHHRIVGCSLAVISGVLYGSTFVPIIYIKDHSKRNDSIYAGASQYDLDYVFAHFS 237
Query: 1113 GIFXHSTVYFLGYCIAMK 1166
GIF STVYFL YCIAMK
Sbjct: 238 GIFLTSTVYFLAYCIAMK 255
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,641,848
Number of extensions: 1351985
Number of successful extensions: 3931
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3928
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,868,908
Effective search space: 4237638780
Effective search space used: 4237638780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013711
(1168 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 654 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 654 bits (330), Expect = 0.0
Identities = 330/330 (100%)
Strand = Plus / Plus
Query: 1 tgcaaggaaggtgtttcctgacctacctccgggagcaaggtccatggtctccttggctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49361074 tgcaaggaaggtgtttcctgacctacctccgggagcaaggtccatggtctccttggctaa 49361133
Query: 61 gcccttcttctttctgagccagcttcctttccgcgggaaggaaaggctggccaggccacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49361134 gcccttcttctttctgagccagcttcctttccgcgggaaggaaaggctggccaggccacc 49361193
Query: 121 tgggacgggacatctgggtcgtgggtgctggagtctcaggctctcttcctgcccggtaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49361194 tgggacgggacatctgggtcgtgggtgctggagtctcaggctctcttcctgcccggtaca 49361253
Query: 181 cagttaactgtcccgcgggaaattaatgccggccaggagccgggcggcagagggaataag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49361254 cagttaactgtcccgcgggaaattaatgccggccaggagccgggcggcagagggaataag 49361313
Query: 241 gcgggtgtagtctcggcgccaacgtggaggacgcgactaagcgaattcagagacagaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49361314 gcgggtgtagtctcggcgccaacgtggaggacgcgactaagcgaattcagagacagaggg 49361373
Query: 301 aagttcagccgccagcccccagggagcaca 330
||||||||||||||||||||||||||||||
Sbjct: 49361374 aagttcagccgccagcccccagggagcaca 49361403
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 331 aagctctcaaaaagaaaatcaagtcctaagtaaccagctggcttgcaagtagttcctgaa 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49384527 aagctctcaaaaagaaaatcaagtcctaagtaaccagctggcttgcaagtagttcctgaa 49384586
Query: 391 ccatgaacaataatgcaacagacctcaccatcggtttcatctcctctactgtagccatcg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49384587 ccatgaacaataatgcaacagacctcaccatcggtttcatctcctctactgtagccatcg 49384646
Query: 451 ttttgtttggctcaaactttgtaccactgaaaaaatatgatactggcgatgg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49384647 ttttgtttggctcaaactttgtaccactgaaaaaatatgatactggcgatgg 49384698
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 501 gggatgtttctccagtgggtactctgtgctgccatatggttagttgctgtcgtggtcaat 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49388293 gggatgtttctccagtgggtactctgtgctgccatatggttagttgctgtcgtggtcaat 49388352
Query: 561 ctgatattacactgccctaagttttggccttttgcaatggttgggggctgcatttgggca 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49388353 ctgatattacactgccctaagttttggccttttgcaatggttgggggctgcatttgggca 49388412
Query: 621 acagg 625
|||||
Sbjct: 49388413 acagg 49388417
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 965 gggctgcagtcttgcagtgatatctggcatactctatggatctacctttgtgccaattat 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49402680 gggctgcagtcttgcagtgatatctggcatactctatggatctacctttgtgccaattat 49402739
Query: 1025 ttacatcaaggaccacagcaaaagaaatgacagcatatatgctggggcgagccagaatg 1083
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49402740 ttacatcaaggaccacagcaaaagaaatgacagcatatatgctggggcgagccagaatg 49402798
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 623 agggaacattgcagttgtcccgatcatcaaaaccatcggcttaggccttggactcttaat 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49391393 agggaacattgcagttgtcccgatcatcaaaaccatcggcttaggccttggactcttaat 49391452
Query: 683 ctggggatcatttaatgccttaactggctgggcaagctcaaggt 726
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49391453 ctggggatcatttaatgccttaactggctgggcaagctcaaggt 49391496
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 804 agtgctttcatatttttgttcatcaaaagtgaaataccaaaaagcacatgttctgtggac 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49397382 agtgctttcatatttttgttcatcaaaagtgaaataccaaaaagcacatgttctgtggac 49397441
Query: 864 accacgccattaataacagagcacgtga 891
||||||||||||||||||||||||||||
Sbjct: 49397442 accacgccattaataacagagcacgtga 49397469
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 723 aggtttggttggtttggaatggatgctgaagaagtgtcaaaaccattgctaaattacatc 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49394073 aggtttggttggtttggaatggatgctgaagaagtgtcaaaaccattgctaaattacatc 49394132
Query: 783 ggagctgggctgtccatagtaag 805
|||||||||||||||||||||||
Sbjct: 49394133 ggagctgggctgtccatagtaag 49394155
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 888 gtgattaataaaactcaagatcccgatcctcattgttcctgggtagataaactttctaca 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49399465 gtgattaataaaactcaagatcccgatcctcattgttcctgggtagataaactttctaca 49399524
Query: 948 gtgcagcaccgcttagtg 965
||||||||||||||||||
Sbjct: 49399525 gtgcagcaccgcttagtg 49399542
Score = 125 bits (63), Expect = 6e-26
Identities = 83/87 (95%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1083 gatttagactacgtttttgcacacttcagcggcatcttccntcac-agcacagtctactt 1141
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 49407071 gatttagactacgtttttgcacacttcagcggcatcttcc-tcacaagcacagtctactt 49407129
Query: 1142 tctgggctactgtatagccatgaaaaa 1168
|||| |||||||||||||||||||||
Sbjct: 49407130 cctggcctactgtatagccatgaaaaa 49407156
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,654,874
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 9
Length of query: 1168
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1147
Effective length of database: 2,808,413,156
Effective search space: 3221249889932
Effective search space used: 3221249889932
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)