Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013712
(1036 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068810.1| DNA fragmentation factor subunit alpha [Bos ... 411 e-115
Alignment gi|XP_002688183.1| PREDICTED: DNA fragmentation factor, 45kDa, ... 354 6e-98
Alignment gi|NP_001076918.1| cell death activator CIDE-A [Bos taurus]. 59 9e-09
Alignment gi|XP_002697851.1| PREDICTED: cell death-inducing DFFA-like eff... 59 9e-09
>ref|NP_001068810.1| DNA fragmentation factor subunit alpha [Bos taurus].
Length = 329
Score = 411 bits (1057), Expect = e-115
Identities = 215/268 (80%), Positives = 230/268 (85%)
Frame = +2
Query: 89 MEVAGGPRAPEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVT 268
MEV GGP APEPGEIRALKQCLL RN+SREQ+GVAAS L+ELRNKACDILAIDKSLAPVT
Sbjct: 1 MEVPGGPAAPEPGEIRALKQCLLRRNKSREQHGVAASCLKELRNKACDILAIDKSLAPVT 60
Query: 269 LVLAEDGTIVDDEDYFLCLPANTKFVALAGNEKWAYNNSDGGTAWIAQESSDRDETDSGP 448
LVLAEDGTIVDD+DYFLCLPANTKFV LAGNEKW +N SDGGTAWI QES DRDETDSG
Sbjct: 61 LVLAEDGTIVDDDDYFLCLPANTKFVVLAGNEKWTHN-SDGGTAWITQESFDRDETDSGA 119
Query: 449 GSKWKNVARQLKXXXXXXXXXXXXXXQMLIDVPCSELAVELCQSCVAVQGLQNMLQEVLD 628
G KWKNVARQLK QMLIDVPCSELA EL QS VAVQGLQN LQ+VLD
Sbjct: 120 GLKWKNVARQLKEDLSSIILLSEEELQMLIDVPCSELAQELSQSHVAVQGLQNTLQQVLD 179
Query: 629 QREEARQSKQLLELYLQALEKEGCVLSKQQESRASYGDERDAVDSGIRESASAIALSRQV 808
QREEARQS+QLLELYL+ALEKEG +LSKQQESRA GDE DAVD+GIRES S + + Q+
Sbjct: 180 QREEARQSRQLLELYLRALEKEGGILSKQQESRADLGDESDAVDTGIRESFSEVTPASQI 239
Query: 809 LIALKEKPAPELSLSNQDLELVAKEDPK 892
L+ALKEKPAPELSLS+QDLELVAKEDPK
Sbjct: 240 LLALKEKPAPELSLSSQDLELVAKEDPK 267
>ref|XP_002688183.1| PREDICTED: DNA fragmentation factor, 45kDa, alpha polypeptide-like
[Bos taurus].
Length = 266
Score = 354 bits (909), Expect = 6e-98
Identities = 189/267 (70%), Positives = 208/267 (77%)
Frame = +2
Query: 89 MEVAGGPRAPEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVT 268
MEVA P APEPGEI ALKQCLL N SREQ+G+AAS LEELRNKA DILAIDKS APVT
Sbjct: 1 MEVASSPAAPEPGEIWALKQCLLRCNNSREQHGMAASCLEELRNKASDILAIDKSQAPVT 60
Query: 269 LVLAEDGTIVDDEDYFLCLPANTKFVALAGNEKWAYNNSDGGTAWIAQESSDRDETDSGP 448
LVL EDGTIVDD DYFLCLPANTKFVALAGNEKW +N SDGGTAWI QES RDETDSG
Sbjct: 61 LVLEEDGTIVDDYDYFLCLPANTKFVALAGNEKWTHN-SDGGTAWITQESFHRDETDSGA 119
Query: 449 GSKWKNVARQLKXXXXXXXXXXXXXXQMLIDVPCSELAVELCQSCVAVQGLQNMLQEVLD 628
G KWKNVARQLK QML D PCSEL EL Q+ V VQGLQN LQ+VLD
Sbjct: 120 GLKWKNVARQLKEDLSSIILMSKEELQMLTDDPCSELPQELGQNHVVVQGLQNTLQQVLD 179
Query: 629 QREEARQSKQLLELYLQALEKEGCVLSKQQESRASYGDERDAVDSGIRESASAIALSRQV 808
Q+EEARQS+QL+ELYLQALEKEG +L KQQESRA GDERDA ++G+R+ +S I + Q+
Sbjct: 180 QKEEARQSRQLVELYLQALEKEGSILLKQQESRADLGDERDAAETGVRKRSSDIMPASQI 239
Query: 809 LIALKEKPAPELSLSNQDLELVAKEDP 889
L+ LKEK APELSLS DLE+ + P
Sbjct: 240 LLVLKEKSAPELSLSGPDLEVGKHQGP 266
>ref|NP_001076918.1| cell death activator CIDE-A [Bos taurus].
Length = 219
Score = 58.5 bits (140), Expect = 9e-09
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +2
Query: 155 LSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVTLVLAEDGTIVDDEDYFLCLPAN 334
+S + + GV ASSL+EL +K D L + L VTLVL EDGT+VD E++F L N
Sbjct: 39 VSNHDRSSRRGVMASSLQELLSKTLDALVVASQL--VTLVLEEDGTVVDTEEFFQTLGDN 96
Query: 335 TKFVALAGNEKW 370
T + L +KW
Sbjct: 97 THLMVLEQGQKW 108
>ref|XP_002697851.1| PREDICTED: cell death-inducing DFFA-like effector a-like [Bos
taurus].
Length = 280
Score = 58.5 bits (140), Expect = 9e-09
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +2
Query: 155 LSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVTLVLAEDGTIVDDEDYFLCLPAN 334
+S + + GV ASSL+EL +K D L + L VTLVL EDGT+VD E++F L N
Sbjct: 39 VSNHDRSSRRGVMASSLQELLSKTLDALVVASQL--VTLVLEEDGTVVDTEEFFQTLGDN 96
Query: 335 TKFVALAGNEKW 370
T + L +KW
Sbjct: 97 THLMVLEQGQKW 108
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,140,845
Number of extensions: 1467400
Number of successful extensions: 7333
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7295
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013712
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013712
(1036 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544574.2| PREDICTED: similar to DNA fragmentation factor ... 359 3e-99
Alignment gi|XP_547681.2| PREDICTED: similar to cell death-inducing DNA f... 59 6e-09
Alignment gi|XP_541777.2| PREDICTED: similar to Cell death activator CIDE... 52 1e-06
>ref|XP_544574.2| PREDICTED: similar to DNA fragmentation factor alpha subunit (DNA
fragmentation factor 45 kDa subunit) (DFF-45) (Inhibitor
of CAD) (ICAD) [Canis familiaris].
Length = 326
Score = 359 bits (921), Expect = 3e-99
Identities = 191/265 (72%), Positives = 208/265 (78%), Gaps = 1/265 (0%)
Frame = +2
Query: 128 EIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVTLVLAEDGTIVDDE 307
E R LK C+L RN SREQ+GVAASSLEELR KACDILAIDKSLAPVTLVLAEDGTIVDD+
Sbjct: 10 ETRTLKPCVLRRNHSREQHGVAASSLEELRRKACDILAIDKSLAPVTLVLAEDGTIVDDD 69
Query: 308 DYFLCLPANTKFVALAGNEKWAYNNSDGGTAWIAQESSDRDETDSGPGSKWKNVARQLKX 487
DYFLCLP+NTKFVALA NEKW YNNSDGGTAWI+QES D DETDSG G KWKNVARQLK
Sbjct: 70 DYFLCLPSNTKFVALASNEKWTYNNSDGGTAWISQESFDVDETDSGAGLKWKNVARQLKE 129
Query: 488 XXXXXXXXXXXXXQMLIDVPCSELAVELCQSCVAVQGLQNMLQEVLDQREEARQSKQLLE 667
Q+LIDVPCS+LA ELCQSCV VQGLQ+ LQ+VLDQREEARQSKQLLE
Sbjct: 130 DLSSIILLSEEDLQVLIDVPCSDLAQELCQSCVTVQGLQDTLQQVLDQREEARQSKQLLE 189
Query: 668 LYLQALEKEGCVLSKQQESRASYGDERDAVDSGIR-ESASAIALSRQVLIALKEKPAPEL 844
LYLQALEKEG +LSKQQ S DE DA D+G +S S AL+ VL LK K APEL
Sbjct: 190 LYLQALEKEGGILSKQQASSGDLSDEVDAGDTGSNGQSTSESALTSHVLTTLKGKLAPEL 249
Query: 845 SLSNQDLELVAKEDPKPVHGAACIG 919
SLS+QDLELV +EDP+ + A G
Sbjct: 250 SLSSQDLELVTREDPRALAAALSWG 274
>ref|XP_547681.2| PREDICTED: similar to cell death-inducing DNA fragmentation factor,
alpha subunit-like effector A [Canis familiaris].
Length = 250
Score = 59.3 bits (142), Expect = 6e-09
Identities = 33/72 (45%), Positives = 43/72 (59%)
Frame = +2
Query: 155 LSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVTLVLAEDGTIVDDEDYFLCLPAN 334
+S + + GV A SL+EL +K + L I L VTLVL EDGT+VD ED+F L N
Sbjct: 70 VSNHDRSSRRGVMADSLKELLSKTLEALVITSGL--VTLVLEEDGTVVDTEDFFQTLGDN 127
Query: 335 TKFVALAGNEKW 370
T F+ L +KW
Sbjct: 128 THFMILEEGQKW 139
>ref|XP_541777.2| PREDICTED: similar to Cell death activator CIDE-3 (Cell
death-inducing DFFA-like effector protein C)
(Fat-specific protein FSP27 homolog) [Canis familiaris].
Length = 238
Score = 51.6 bits (122), Expect = 1e-06
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +2
Query: 143 KQCLLSRNQSREQYGVAASSLEELRNKACDILAI-DKSLAPVTLVLAEDGTIVDDEDYFL 319
+ C +S + G+ A SL++L NK D L + DK P LVL EDGT V+ E+YF
Sbjct: 43 RPCRVSTADRSVRKGIIAHSLKDLLNKVRDTLLLADK---PFYLVLEEDGTTVETEEYFQ 99
Query: 320 CLPANTKFVALAGNEKW 370
L +T F+ L +KW
Sbjct: 100 ALADDTVFMVLQKGQKW 116
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,080,017
Number of extensions: 1512180
Number of successful extensions: 7539
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7492
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013712
(1036 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127611.1| PREDICTED: DNA fragmentation factor subunit ... 492 e-139
Alignment gi|NP_001106166.1| cell death activator CIDE-A [Sus scrofa]. 57 1e-08
>ref|XP_003127611.1| PREDICTED: DNA fragmentation factor subunit alpha-like [Sus
scrofa].
Length = 330
Score = 492 bits (1267), Expect = e-139
Identities = 254/268 (94%), Positives = 254/268 (94%)
Frame = +2
Query: 89 MEVAGGPRAPEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVT 268
MEVAGGPRAPEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVT
Sbjct: 1 MEVAGGPRAPEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVT 60
Query: 269 LVLAEDGTIVDDEDYFLCLPANTKFVALAGNEKWAYNNSDGGTAWIAQESSDRDETDSGP 448
LVLAEDGTIVDDEDYFLCLPANTKFVALAGNEKWAYNNSDGGTAWIAQESSDRDETDSGP
Sbjct: 61 LVLAEDGTIVDDEDYFLCLPANTKFVALAGNEKWAYNNSDGGTAWIAQESSDRDETDSGP 120
Query: 449 GSKWKNVARQLKXXXXXXXXXXXXXXQMLIDVPCSELAVELCQSCVAVQGLQNMLQEVLD 628
GSKWKNVARQLK QMLIDVPCSELAVELCQSCVAVQGLQNMLQEVLD
Sbjct: 121 GSKWKNVARQLKEDLSSIILLSEEDLQMLIDVPCSELAVELCQSCVAVQGLQNMLQEVLD 180
Query: 629 QREEARQSKQLLELYLQALEKEGCVLSKQQESRASYGDERDAVDSGIRESASAIALSRQV 808
QREEARQSKQLLELYLQALEKEGCVLSKQQESRASYGDERDAVDSGIRESASAIALSRQV
Sbjct: 181 QREEARQSKQLLELYLQALEKEGCVLSKQQESRASYGDERDAVDSGIRESASAIALSRQV 240
Query: 809 LIALKEKPAPELSLSNQDLELVAKEDPK 892
LIALKEKPAPELSLSNQDLELVAKEDPK
Sbjct: 241 LIALKEKPAPELSLSNQDLELVAKEDPK 268
>ref|NP_001106166.1| cell death activator CIDE-A [Sus scrofa].
Length = 219
Score = 57.4 bits (137), Expect = 1e-08
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +2
Query: 155 LSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVTLVLAEDGTIVDDEDYFLCLPAN 334
+S + + GV ASSL+E +K D L I + VTLVL EDGT+VD E++F L N
Sbjct: 39 VSNHNRSSRRGVTASSLQEPLSKTLDALVIASRV--VTLVLEEDGTVVDTEEFFQMLGDN 96
Query: 335 TKFVALAGNEKW 370
T F+ L +KW
Sbjct: 97 THFMVLEKGQKW 108
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,207,209
Number of extensions: 952006
Number of successful extensions: 4841
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4812
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013712
(1036 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020467.1| DNA fragmentation factor subunit alpha isofo... 370 e-102
Alignment gi|NP_034174.2| DNA fragmentation factor subunit alpha isoform ... 358 4e-99
Alignment gi|NP_031728.2| cell death activator CIDE-A [Mus musculus]. 62 7e-10
Alignment gi|NP_848460.1| cell death activator CIDE-3 [Mus musculus]. 60 3e-09
>ref|NP_001020467.1| DNA fragmentation factor subunit alpha isoform a [Mus musculus].
Length = 331
Score = 370 bits (949), Expect = e-102
Identities = 187/269 (69%), Positives = 219/269 (81%), Gaps = 1/269 (0%)
Frame = +2
Query: 89 MEVAGGPRAPEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVT 268
ME++ G AP+P ++R LK CLL RN SR+Q+GVAASSLEELR+KAC++LAIDKSL P+T
Sbjct: 1 MELSRGASAPDPDDVRPLKPCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPIT 60
Query: 269 LVLAEDGTIVDDEDYFLCLPANTKFVALAGNEKWAYNNSDGGTAWIAQESSDRDETDSGP 448
LVLAEDGTIVDD+DYFLCLP+NTKFVALA NEKW YN+SDGGTAW++QES + DE DS
Sbjct: 61 LVLAEDGTIVDDDDYFLCLPSNTKFVALACNEKWIYNDSDGGTAWVSQESFEADEPDSRA 120
Query: 449 GSKWKNVARQLKXXXXXXXXXXXXXXQMLIDVPCSELAVELCQSCVAVQGLQNMLQEVLD 628
G KWKNVARQLK Q LID+PC+ELA ELCQSC VQGLQ+ LQ+VLD
Sbjct: 121 GVKWKNVARQLKEDLSSIILLSEEDLQALIDIPCAELAQELCQSCATVQGLQSTLQQVLD 180
Query: 629 QREEARQSKQLLELYLQALEKEGCVLSKQQESRASYGDERDAVDSGI-RESASAIALSRQ 805
QREEARQSKQLLELYLQALEKEG +LS Q+ES+A+ +E DAVD+G+ RE AS + L Q
Sbjct: 181 QREEARQSKQLLELYLQALEKEGNILSNQKESKAALSEELDAVDTGVGREMASEVLLRSQ 240
Query: 806 VLIALKEKPAPELSLSNQDLELVAKEDPK 892
+L LKEKPAPELSLS+QDLE V+KEDPK
Sbjct: 241 ILTTLKEKPAPELSLSSQDLESVSKEDPK 269
>ref|NP_034174.2| DNA fragmentation factor subunit alpha isoform b [Mus musculus].
Length = 265
Score = 358 bits (919), Expect = 4e-99
Identities = 181/262 (69%), Positives = 213/262 (81%), Gaps = 1/262 (0%)
Frame = +2
Query: 89 MEVAGGPRAPEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVT 268
ME++ G AP+P ++R LK CLL RN SR+Q+GVAASSLEELR+KAC++LAIDKSL P+T
Sbjct: 1 MELSRGASAPDPDDVRPLKPCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPIT 60
Query: 269 LVLAEDGTIVDDEDYFLCLPANTKFVALAGNEKWAYNNSDGGTAWIAQESSDRDETDSGP 448
LVLAEDGTIVDD+DYFLCLP+NTKFVALA NEKW YN+SDGGTAW++QES + DE DS
Sbjct: 61 LVLAEDGTIVDDDDYFLCLPSNTKFVALACNEKWIYNDSDGGTAWVSQESFEADEPDSRA 120
Query: 449 GSKWKNVARQLKXXXXXXXXXXXXXXQMLIDVPCSELAVELCQSCVAVQGLQNMLQEVLD 628
G KWKNVARQLK Q LID+PC+ELA ELCQSC VQGLQ+ LQ+VLD
Sbjct: 121 GVKWKNVARQLKEDLSSIILLSEEDLQALIDIPCAELAQELCQSCATVQGLQSTLQQVLD 180
Query: 629 QREEARQSKQLLELYLQALEKEGCVLSKQQESRASYGDERDAVDSGI-RESASAIALSRQ 805
QREEARQSKQLLELYLQALEKEG +LS Q+ES+A+ +E DAVD+G+ RE AS + L Q
Sbjct: 181 QREEARQSKQLLELYLQALEKEGNILSNQKESKAALSEELDAVDTGVGREMASEVLLRSQ 240
Query: 806 VLIALKEKPAPELSLSNQDLEL 871
+L LKEKPAPELSLS+QDLE+
Sbjct: 241 ILTTLKEKPAPELSLSSQDLEV 262
>ref|NP_031728.2| cell death activator CIDE-A [Mus musculus].
Length = 217
Score = 62.0 bits (149), Expect = 7e-10
Identities = 34/72 (47%), Positives = 45/72 (62%)
Frame = +2
Query: 155 LSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVTLVLAEDGTIVDDEDYFLCLPAN 334
+S + + GV ASSL+EL +K D+L I L VTLVL EDGT+VD E++F L N
Sbjct: 39 VSNHDRSSRRGVMASSLQELISKTLDVLVITTGL--VTLVLEEDGTVVDTEEFFQTLRDN 96
Query: 335 TKFVALAGNEKW 370
T F+ L +KW
Sbjct: 97 THFMILEKGQKW 108
>ref|NP_848460.1| cell death activator CIDE-3 [Mus musculus].
Length = 239
Score = 60.1 bits (144), Expect = 3e-09
Identities = 32/76 (42%), Positives = 45/76 (59%)
Frame = +2
Query: 143 KQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVTLVLAEDGTIVDDEDYFLC 322
+ C +S + + G+ A SLE+L NK DIL + P +LVL EDGTIV+ E+YF
Sbjct: 43 RPCRVSTADRKVRKGIMAHSLEDLLNKVQDILKLKDK--PFSLVLEEDGTIVETEEYFQA 100
Query: 323 LPANTKFVALAGNEKW 370
L +T F+ L +KW
Sbjct: 101 LAKDTMFMVLLKGQKW 116
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,570,033
Number of extensions: 1199605
Number of successful extensions: 5600
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5560
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013712
(1036 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004392.1| DNA fragmentation factor subunit alpha isoform ... 379 e-105
Alignment gi|NP_998731.1| DNA fragmentation factor subunit alpha isoform ... 366 e-101
Alignment gi|NP_001270.1| cell death activator CIDE-A isoform 1 [Homo sap... 60 3e-09
Alignment gi|NP_001186481.1| cell death activator CIDE-3 isoform 3 [Homo ... 52 7e-07
Alignment gi|NP_071377.2| cell death activator CIDE-3 isoform 3 [Homo sap... 52 7e-07
Alignment gi|NP_001186552.1| cell death activator CIDE-3 isoform 1 [Homo ... 52 7e-07
>ref|NP_004392.1| DNA fragmentation factor subunit alpha isoform 1 [Homo sapiens].
Length = 331
Score = 379 bits (974), Expect = e-105
Identities = 196/269 (72%), Positives = 221/269 (82%), Gaps = 1/269 (0%)
Frame = +2
Query: 89 MEVAGGPRAPEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVT 268
MEV G PE GEIR LK CLL RN SREQ+GVAAS LE+LR+KACDILAIDKSL PVT
Sbjct: 1 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT 60
Query: 269 LVLAEDGTIVDDEDYFLCLPANTKFVALAGNEKWAYNNSDGGTAWIAQESSDRDETDSGP 448
LVLAEDGTIVDD+DYFLCLP+NTKFVALA NEKWAYNNSDGGTAWI+QES D DETDSG
Sbjct: 61 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA 120
Query: 449 GSKWKNVARQLKXXXXXXXXXXXXXXQMLIDVPCSELAVELCQSCVAVQGLQNMLQEVLD 628
G KWKNVARQLK QML+D PCS+LA EL QSC VQ LQ+ LQ+VLD
Sbjct: 121 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD 180
Query: 629 QREEARQSKQLLELYLQALEKEGCVLSKQQESRASYGDERDAVDSGI-RESASAIALSRQ 805
QREE RQSKQLL+LYLQALEKEG +LSKQ+ES+A++G+E DAVD+GI RE++S +AL+
Sbjct: 181 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH 240
Query: 806 VLIALKEKPAPELSLSNQDLELVAKEDPK 892
+L AL+EK APELSLS+QDLELV KEDPK
Sbjct: 241 ILTALREKQAPELSLSSQDLELVTKEDPK 269
>ref|NP_998731.1| DNA fragmentation factor subunit alpha isoform 2 [Homo sapiens].
Length = 268
Score = 366 bits (939), Expect = e-101
Identities = 189/262 (72%), Positives = 215/262 (82%), Gaps = 1/262 (0%)
Frame = +2
Query: 89 MEVAGGPRAPEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVT 268
MEV G PE GEIR LK CLL RN SREQ+GVAAS LE+LR+KACDILAIDKSL PVT
Sbjct: 1 MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVT 60
Query: 269 LVLAEDGTIVDDEDYFLCLPANTKFVALAGNEKWAYNNSDGGTAWIAQESSDRDETDSGP 448
LVLAEDGTIVDD+DYFLCLP+NTKFVALA NEKWAYNNSDGGTAWI+QES D DETDSG
Sbjct: 61 LVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGGTAWISQESFDVDETDSGA 120
Query: 449 GSKWKNVARQLKXXXXXXXXXXXXXXQMLIDVPCSELAVELCQSCVAVQGLQNMLQEVLD 628
G KWKNVARQLK QML+D PCS+LA EL QSC VQ LQ+ LQ+VLD
Sbjct: 121 GLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQELRQSCATVQRLQHTLQQVLD 180
Query: 629 QREEARQSKQLLELYLQALEKEGCVLSKQQESRASYGDERDAVDSGI-RESASAIALSRQ 805
QREE RQSKQLL+LYLQALEKEG +LSKQ+ES+A++G+E DAVD+GI RE++S +AL+
Sbjct: 181 QREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGEEVDAVDTGISRETSSDVALASH 240
Query: 806 VLIALKEKPAPELSLSNQDLEL 871
+L AL+EK APELSLS+QDLE+
Sbjct: 241 ILTALREKQAPELSLSSQDLEV 262
>ref|NP_001270.1| cell death activator CIDE-A isoform 1 [Homo sapiens].
Length = 219
Score = 60.1 bits (144), Expect = 3e-09
Identities = 34/72 (47%), Positives = 44/72 (61%)
Frame = +2
Query: 155 LSRNQSREQYGVAASSLEELRNKACDILAIDKSLAPVTLVLAEDGTIVDDEDYFLCLPAN 334
+S + + GV ASSL+EL +K D L I L VTLVL EDGT+VD E++F L N
Sbjct: 39 VSNHDRSSRRGVMASSLQELISKTLDALVIATGL--VTLVLEEDGTVVDTEEFFQTLGDN 96
Query: 335 TKFVALAGNEKW 370
T F+ L +KW
Sbjct: 97 THFMILEKGQKW 108
>ref|NP_001186481.1| cell death activator CIDE-3 isoform 3 [Homo sapiens].
Length = 238
Score = 52.4 bits (124), Expect = 7e-07
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 116 PEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAI-DKSLAPVTLVLAEDGT 292
P P RA + C +S + G+ A SLE+L K D L + DK P LVL EDGT
Sbjct: 35 PSPKAPRA-RPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADK---PFFLVLEEDGT 90
Query: 293 IVDDEDYFLCLPANTKFVALAGNEKWAYNNSDG 391
V+ E+YF L +T F+ L +KW + G
Sbjct: 91 TVETEEYFQALAGDTVFMVLQKGQKWQPPSEQG 123
>ref|NP_071377.2| cell death activator CIDE-3 isoform 3 [Homo sapiens].
Length = 238
Score = 52.4 bits (124), Expect = 7e-07
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 116 PEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAI-DKSLAPVTLVLAEDGT 292
P P RA + C +S + G+ A SLE+L K D L + DK P LVL EDGT
Sbjct: 35 PSPKAPRA-RPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADK---PFFLVLEEDGT 90
Query: 293 IVDDEDYFLCLPANTKFVALAGNEKWAYNNSDG 391
V+ E+YF L +T F+ L +KW + G
Sbjct: 91 TVETEEYFQALAGDTVFMVLQKGQKWQPPSEQG 123
>ref|NP_001186552.1| cell death activator CIDE-3 isoform 1 [Homo sapiens].
Length = 251
Score = 52.4 bits (124), Expect = 7e-07
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 116 PEPGEIRALKQCLLSRNQSREQYGVAASSLEELRNKACDILAI-DKSLAPVTLVLAEDGT 292
P P RA + C +S + G+ A SLE+L K D L + DK P LVL EDGT
Sbjct: 48 PSPKAPRA-RPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADK---PFFLVLEEDGT 103
Query: 293 IVDDEDYFLCLPANTKFVALAGNEKWAYNNSDG 391
V+ E+YF L +T F+ L +KW + G
Sbjct: 104 TVETEEYFQALAGDTVFMVLQKGQKWQPPSEQG 136
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,976,881
Number of extensions: 1464789
Number of successful extensions: 7169
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7113
Number of HSP's successfully gapped: 6
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013712
(1036 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 462 e-127
>Sscrofa_Chr06
|| Length = 157765593
Score = 462 bits (233), Expect = e-127
Identities = 301/321 (93%), Gaps = 2/321 (0%)
Strand = Plus / Minus
Query: 718 agagtccagagccagctacggtgatgagagggatgcagttgactcgggcatcagagagag 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64660311 agagtccagagccagctacggtgatgagagggatgcagttgactcgggcatcagagagag 64660252
Query: 778 cgcctccgcaattgcgctctcgagacaggtccttatcgcgctgaaggagaagcccgcccc 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64660251 cgcctccgcaattgcgctctcgagacaggtccttatcgcgctgaaggagaagcccgcccc 64660192
Query: 838 agagctgagtttgtctaatcaggacctggagctggttgccaaggaggaccctaaacctgt 897
||||||||||||||||||||||||||||||| ||| | | ||| ||| ||||||
Sbjct: 64660191 agagctgagtttgtctaatcaggacctggaggtgggcgagcaccagggaccttgacctgt 64660132
Query: 898 gcatggtgctgcttgtattgggttctttcaactctgcagaccctgactcatcgctgccaa 957
||| || | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 64660131 gcagggagaggcttgtattgggttctttcacctctgcagaccctgactcatcgctgccaa 64660072
Query: 958 tttg-ctgttatatgcaaagcattcgcaaacatcttatttaatgtaaatc-taaaatgaa 1015
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 64660071 tttgcctgttatatgcaaagcattcgcaaacatcttatttaatgtaaatcttaaaatgag 64660012
Query: 1016 tactgtctccctcagatcatc 1036
|||||||||||||||||||||
Sbjct: 64660011 tactgtctccctcagatcatc 64659991
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 22 tggggaaggactccggcgcccagcctcccctacttcctggcgggtgtcaggtcccaccct 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64669075 tggggaaggactccggcgcccagcctcccctacttcctggcgggtgtcaggtcccaccct 64669016
Query: 82 gaagaggatggaagtggccggcggccccagggctccagagcctggggagatccgggctct 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64669015 gaagaggatggaagtggccggcggccccagggctccagagcctggggagatccgggctct 64668956
Query: 142 aaaacagtgtctgctgagccgcaatcaaagccgggaacagtatggcgtggcagcctcctc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64668955 aaaacagtgtctgctgagccgcaatcaaagccgggaacagtatggcgtggcagcctcctc 64668896
Query: 202 cctggaggagctgaggaacaagg 224
|||||||||||||||||||||||
Sbjct: 64668895 cctggaggagctgaggaacaagg 64668873
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 530 atgctcatcgatgttccatgttcggagctggctgtggagctgtgccaaagctgcgtcgcg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64660702 atgctcatcgatgttccatgttcggagctggctgtggagctgtgccaaagctgcgtcgcg 64660643
Query: 590 gttcaggggctccagaacatgctccaggaggtgcttgaccagagagaggaagcccgtcag 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64660642 gttcaggggctccagaacatgctccaggaggtgcttgaccagagagaggaagcccgtcag 64660583
Query: 650 tccaagcagctcttggagctttacctccaggctttggagaaggagggctgcgtcttgtcg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64660582 tccaagcagctcttggagctttacctccaggctttggagaaggagggctgcgtcttgtcg 64660523
Query: 710 aagcagcaag 719
||||||||||
Sbjct: 64660522 aagcagcaag 64660513
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 224 gcctgtgacattctggccattgataagtccctggcacccgtcaccctggtcctggcagag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64666858 gcctgtgacattctggccattgataagtccctggcacccgtcaccctggtcctggcagag 64666799
Query: 284 gatggaaccatagtggatgatgaagattacttcctgtgtcttcctgccaacacgaagttc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64666798 gatggaaccatagtggatgatgaagattacttcctgtgtcttcctgccaacacgaagttc 64666739
Query: 344 gtggcgttggctggtaatgagaagtgggcgtacaacaattcag 386
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64666738 gtggcgttggctggtaatgagaagtgggcgtacaacaattcag 64666696
Score = 283 bits (143), Expect = 9e-74
Identities = 146/147 (99%)
Strand = Plus / Minus
Query: 383 tcagatggaggcacagcttggattgcccaggagtcctctgatagagatgaaacagacagc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64665162 tcagatggaggcacagcttggattgcccaggagtcctctgatagagatgaaacagacagc 64665103
Query: 443 gggccggggtcgaagtggaaaaacgtggccaggcagctgaaagaagacctgtccagcatc 502
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64665102 gggcctgggtcgaagtggaaaaacgtggccaggcagctgaaagaagacctgtccagcatc 64665043
Query: 503 atcctcctgtcggaggaggacctccaa 529
|||||||||||||||||||||||||||
Sbjct: 64665042 atcctcctgtcggaggaggacctccaa 64665016
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,330,934
Number of extensions: 187
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 6
Length of query: 1036
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1015
Effective length of database: 2,808,413,156
Effective search space: 2850539353340
Effective search space used: 2850539353340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)