Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013714
(1273 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 474 e-133
Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 189 5e-48
Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 177 1e-44
Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 160 2e-39
Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 157 2e-38
Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 150 3e-36
Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 150 3e-36
Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 150 3e-36
Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 149 6e-36
Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 146 5e-35
>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis
familiaris].
Length = 382
Score = 474 bits (1219), Expect = e-133
Identities = 241/344 (70%), Positives = 276/344 (80%), Gaps = 1/344 (0%)
Frame = +1
Query: 214 FSETGWLCLTVTAVLGAVILCKLKKNHRQEGRKMVXXXXXXXXXXXXXXXXXXXXXXXXX 393
FSET WLCL VT VLG + L L+K Q RK+V
Sbjct: 4 FSETVWLCLAVTVVLGGLALGNLRKIPGQMRRKVVCLAGLWGGAYLLFSLSLSWGLILFF 63
Query: 394 X-CFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAE 570
C L Y Y SGQE LPVDQKAVLITGGDSG GHALSKYLD+LGFTVF GVLDEKGSGAE
Sbjct: 64 LSCVLTYTYLSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAE 123
Query: 571 ELRRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPM 750
ELRRTCSK LSVLQ+DIT+ QQI+DAHSKV+EK+Q+RGLWAVVNNAGI+ P DGELIPM
Sbjct: 124 ELRRTCSKRLSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNAGIICLPADGELIPM 183
Query: 751 TQYKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMF 930
T YK+CMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMA GVPMEK+AAYSS+KAALTMF
Sbjct: 184 TDYKKCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAAGVPMEKLAAYSSSKAALTMF 243
Query: 931 SAVMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILK 1110
SAVMR+ELSKWGVKVSVIQPG F+TNIAGTS++W KLEKNILD L+ +++EDYG+DYIL+
Sbjct: 244 SAVMRQELSKWGVKVSVIQPGGFRTNIAGTSEMWSKLEKNILDHLSSDVEEDYGKDYILQ 303
Query: 1111 QRSFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTPEKCLFC 1242
QR++LK ++ + D+SPVL D++HA+SAKSP+AFY P +C
Sbjct: 304 QRNYLKSINIKTNTDISPVLQDIRHAVSAKSPFAFYAPGALAYC 347
>ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2
(11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2)
(11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid
dehydrogenase) [Canis familiaris].
Length = 323
Score = 189 bits (480), Expect = 5e-48
Identities = 106/254 (41%), Positives = 143/254 (56%)
Frame = +1
Query: 475 DSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDITNSQQIRDAHS 654
DSG G +K LD +GFTV A VL+ G GA ELR CS L +LQ+D+T I A
Sbjct: 9 DSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRALE 68
Query: 655 KVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEVTKAFLPLLRKS 834
+ GLW +VNNAG D EL P+ ++ CM VNFFGA+E+TK LPLLR+S
Sbjct: 69 FTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRRS 128
Query: 835 KGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSVIQPGSFQTNIA 1014
+GR+V + S AG +P +AAY ++KAA+ + EL WGVKVSVIQPG F+T
Sbjct: 129 RGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKTESV 188
Query: 1015 GTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVSPVLLDVQHAIS 1194
W++ ++ +L L L + YG+DYI + PD+SPV+ + A+
Sbjct: 189 RNVGHWEQRKQLLLASLPRELLQAYGEDYIEHLHGQFLHSLRLALPDLSPVVDAITDALL 248
Query: 1195 AKSPYAFYTPEKCL 1236
A P Y P + L
Sbjct: 249 AAQPRRRYYPGRGL 262
>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
[Canis familiaris].
Length = 299
Score = 177 bits (450), Expect = 1e-44
Identities = 105/269 (39%), Positives = 159/269 (59%), Gaps = 8/269 (2%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVL--DEKGSGAEELRRTCSKHLSVLQL 615
V KAVL+TG DSG G +L+K+L GF VFAG L D+ G G +EL S L +QL
Sbjct: 9 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLRTIQL 68
Query: 616 DITNSQQIRDAHSKVMEKVQN--RGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFG 789
++ +++ V +++ +G+W +VNNAGI F + E M YK VN +G
Sbjct: 69 NVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGISTFG-EVEFTSMETYKEVAEVNLWG 127
Query: 790 AVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGV 969
V++TKAFLPL+R+++GR+VNISSM G + + Y TK + FS +R E+ GV
Sbjct: 128 TVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGV 187
Query: 970 KVSVIQPGSFQTNIAGTS----DLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMS 1137
KVSV++PG+F IA TS + + + D+L +++DYG+ Y ++ + ++
Sbjct: 188 KVSVVEPGNF---IAATSLYNPERIQAIADKMWDELPEVVRKDYGRKYFDEKIARMQAYC 244
Query: 1138 NSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
NS D+SPV+ V HA++++SPY Y P
Sbjct: 245 NSGSTDISPVVSAVTHALTSRSPYTRYHP 273
>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
[Canis familiaris].
Length = 313
Score = 160 bits (406), Expect = 2e-39
Identities = 96/262 (36%), Positives = 151/262 (57%), Gaps = 1/262 (0%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K V ITG DSG G+ L++ L G V A E+G A++L+R S L LD+
Sbjct: 23 LSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEG--AQKLQRDTSYRLQTTLLDV 80
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPI-DGELIPMTQYKRCMAVNFFGAVE 798
T ++ I+ A V ++V +GLWA+VNNAGI G P E + + + + VN G +E
Sbjct: 81 TRTESIQAATQWVRDQVGEQGLWALVNNAGI-GLPSGPNEWLTKEDFVKVINVNLVGLIE 139
Query: 799 VTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVS 978
VT LP+++K++GR+VN+SS G V + Y +K + FS +R+EL +GVKVS
Sbjct: 140 VTLHMLPMVKKARGRVVNMSSSGGRVALIG-GGYCVSKFGVEAFSDSIRRELHYFGVKVS 198
Query: 979 VIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDV 1158
+I+PG+++T+I G D+ ++ K + + L ++ YG++Y LK M S+EP +
Sbjct: 199 IIEPGNYRTSILGKEDMVSRMRK-LWERLPQETKDSYGEEYFRNYTDKLKNMMQSAEPRI 257
Query: 1159 SPVLLDVQHAISAKSPYAFYTP 1224
V ++HAI ++SP Y P
Sbjct: 258 REVTNSMEHAIVSRSPRVRYNP 279
>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
4 isoform 1 [Canis familiaris].
Length = 317
Score = 157 bits (397), Expect = 2e-38
Identities = 98/282 (34%), Positives = 155/282 (54%), Gaps = 7/282 (2%)
Frame = +1
Query: 400 FLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELR 579
+L+ Y Q + K V ITG DSG G+ L++ LD G V A L EKG A++LR
Sbjct: 13 YLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKG--AQQLR 70
Query: 580 RTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQY 759
S L + LD+T ++ I A V E V +RGLW +VNNAGI E + +
Sbjct: 71 SQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTAPNEWLTKDDF 130
Query: 760 KRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAV 939
+ + VN G VEVT + L L+RK++GR+VN+SS+ G + + Y +K + FS
Sbjct: 131 MKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSL-CGGGYCISKYGVEAFSDS 189
Query: 940 MRKELSKWGVKVSVIQPGSFQTNIA-------GTSDLWDKLEKNILDDLTPNLQEDYGQD 1098
+R+EL+ +GVKV+VI+PG F TN+ G + WD+ L+P ++E YG++
Sbjct: 190 LRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDR--------LSPEVREAYGEE 241
Query: 1099 YILKQRSFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
++ R ++ + + + ++ V ++HA++A P Y+P
Sbjct: 242 FLASARKPIEKLKSMCDTNLYLVTNCMEHALTACHPRTRYSP 283
>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase
[Canis familiaris].
Length = 753
Score = 150 bits (378), Expect = 3e-36
Identities = 89/276 (32%), Positives = 152/276 (55%), Gaps = 2/276 (0%)
Frame = +1
Query: 397 CFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEEL 576
C ++ Y + + K + ITG D+G G+ ++ DK GF V A L E S A L
Sbjct: 446 CGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTA--L 503
Query: 577 RRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQ 756
+ S+ L + LD+T+ + ++ V +V +GLW ++NNAG+LG + + +
Sbjct: 504 KAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVLGVLAPTDWLTVED 563
Query: 757 YKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSA 936
Y+ + VN FG + VT LPL++K++GR++N+SS+ G + + Y+ +K A+ F+
Sbjct: 564 YREPIEVNLFGLISVTLNLLPLVKKARGRIINVSSIGGRLAISG-GGYTPSKYAVEGFND 622
Query: 937 VMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKN--ILDDLTPNLQEDYGQDYILK 1110
+R+++ +GV VS I+PG F+T G SD EK I L+P++++ YG+ YI K
Sbjct: 623 SLRRDMKAFGVHVSCIEPGLFKT---GLSDPIKATEKKLAIWKHLSPDIKQQYGESYIEK 679
Query: 1111 QRSFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFY 1218
LK ++ D+S V+ + HA+++ P Y
Sbjct: 680 SLDKLKDTTSFVNVDLSLVVECMDHALTSLFPKTRY 715
>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase
4 isoform 2 [Canis familiaris].
Length = 319
Score = 150 bits (378), Expect = 3e-36
Identities = 101/287 (35%), Positives = 155/287 (54%), Gaps = 12/287 (4%)
Frame = +1
Query: 400 FLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELR 579
+L+ Y Q + K V ITG DSG G+ L++ LD G V A L EKG A++LR
Sbjct: 13 YLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKG--AQQLR 70
Query: 580 RTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQY 759
S L + LD+T ++ I A V E V +RGLW +VNNAGI E + +
Sbjct: 71 SQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPTAPNEWLTKDDF 130
Query: 760 KRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAV 939
+ + VN G VEVT + L L+RK++GR+VN+SS+ G + + Y +K + FS
Sbjct: 131 MKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSL-CGGGYCISKYGVEAFSDS 189
Query: 940 MRKELSKWGVKVSVIQPGSFQTNIA-------GTSDLWDKLEKNILDDLTPNLQEDYGQD 1098
+R+EL+ +GVKV+VI+PG F TN+ G + WD+ L+P ++E YG++
Sbjct: 190 LRRELTYFGVKVAVIEPGYFSTNVTNPEKISRGFQETWDR--------LSPEVREAYGEE 241
Query: 1099 YI-----LKQRSFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
+ L + LK M ++ ++ V ++HA++A P Y+P
Sbjct: 242 HARTPGKLAVKELLKSMCDT---NLYLVTNCMEHALTACHPRTRYSP 285
>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
[Canis familiaris].
Length = 339
Score = 150 bits (378), Expect = 3e-36
Identities = 94/267 (35%), Positives = 146/267 (54%), Gaps = 1/267 (0%)
Frame = +1
Query: 427 QEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSV 606
Q+ LP V ITG DSG G L+ LD+ GF V A L +GAE+L+R S L
Sbjct: 42 QQSLPASDAFVFITGCDSGFGRLLALRLDQRGFRVLASCLTP--AGAEDLQRVASSRLHT 99
Query: 607 LQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFF 786
LD+T Q ++ A V V GL+ +VNNAG+ G + + R + VN
Sbjct: 100 TLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWLTQDDFHRVLNVNTL 159
Query: 787 GAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWG 966
G + VT A LPLL++S+GR+VNISS+ G + Y +K L FS +R++++ +G
Sbjct: 160 GPIRVTLALLPLLQQSRGRVVNISSVLGRLAANG-GGYCVSKFGLEAFSDSLRRDVAHFG 218
Query: 967 VKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLK-FMSNS 1143
V+VS+++PG F+T + L + L++ L P+ Q YG+ ++ K + MS
Sbjct: 219 VRVSIVEPGFFRTPVTNLEHLENTLQE-CWARLPPSTQAHYGEAFLPKYLQVQQHIMSLI 277
Query: 1144 SEPDVSPVLLDVQHAISAKSPYAFYTP 1224
+PD++ V ++HA++A+ P Y+P
Sbjct: 278 CDPDLTKVSRCLEHALTARYPRTRYSP 304
>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
familiaris].
Length = 317
Score = 149 bits (376), Expect = 6e-36
Identities = 95/275 (34%), Positives = 152/275 (55%)
Frame = +1
Query: 397 CFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEEL 576
C L + Y Q + K V ITG DSG G+ L++ LD G V A L EKG A++L
Sbjct: 13 CLLRW-YRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKG--AQQL 69
Query: 577 RRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQ 756
R S L + LD+T ++ I A V E+V +RGLW +VNNAGI E + +
Sbjct: 70 RSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHCYSEWLKIEA 129
Query: 757 YKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSA 936
Y VN G +EVT + LPLLR+++GR+VN+SS+ G + AY S+K + FS
Sbjct: 130 YVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFG-GAYCSSKYGVEAFSD 188
Query: 937 VMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQR 1116
+R+EL +GVK+S+++PG F+T + + ++L K +++ +++E YGQ +
Sbjct: 189 TLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERL-KQAWEEVPTHIKEAYGQKFFDAHH 247
Query: 1117 SFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYT 1221
+ +K +++ V ++HA+++ P Y+
Sbjct: 248 NGVKQGLLKCSTNLNLVTDCMEHALTSVHPRTRYS 282
>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
familiaris].
Length = 323
Score = 146 bits (368), Expect = 5e-35
Identities = 89/235 (37%), Positives = 135/235 (57%)
Frame = +1
Query: 397 CFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEEL 576
C L + Y Q + K V ITG DSG G+ L++ LD G V A L EKG A++L
Sbjct: 13 CLLRW-YRERQVVSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKG--AQQL 69
Query: 577 RRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQ 756
R S L + LD+T ++ I A V E+V +RGLW +VNNAGI E + +
Sbjct: 70 RSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPHCYSEWLKIEA 129
Query: 757 YKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSA 936
Y VN G +EVT + LPLLR+++GR+VN+SS+ G + AY S+K + FS
Sbjct: 130 YVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFG-GAYCSSKYGVEAFSD 188
Query: 937 VMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDY 1101
+R+EL +GVK+S+++PG F+T + + ++L K +++ +++E YGQ +
Sbjct: 189 TLRRELRHFGVKISIVEPGYFRTGMTHVAWCLERL-KQAWEEVPTHIKEAYGQKF 242
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,170,766
Number of extensions: 1313126
Number of successful extensions: 4920
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 4858
Number of HSP's successfully gapped: 45
Length of query: 424
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 318
Effective length of database: 15,340,888
Effective search space: 4878402384
Effective search space used: 4878402384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013714
(1273 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos tauru... 498 e-141
Alignment gi|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 208 7e-54
Alignment gi|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitoch... 182 6e-46
Alignment gi|NP_777158.1| dehydrogenase/reductase SDR family member 9 pre... 157 2e-38
Alignment gi|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 ... 156 3e-38
Alignment gi|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus]. 156 4e-38
Alignment gi|NP_001077206.1| short-chain dehydrogenase/reductase family 9... 155 6e-38
Alignment gi|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus]. 146 3e-35
Alignment gi|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos ta... 87 4e-17
Alignment gi|NP_001039627.1| dehydrogenase/reductase SDR family member 7 ... 77 4e-14
>ref|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos taurus].
Length = 388
Score = 498 bits (1281), Expect = e-141
Identities = 246/343 (71%), Positives = 285/343 (83%)
Frame = +1
Query: 202 MGTFFSETGWLCLTVTAVLGAVILCKLKKNHRQEGRKMVXXXXXXXXXXXXXXXXXXXXX 381
MGTFFSE GWL LTVTAVLG ILCKLK + Q GRK+V
Sbjct: 1 MGTFFSEPGWLFLTVTAVLGGTILCKLKTSPGQVGRKVVCLAGLWGGACLISLSLFWGLV 60
Query: 382 XXXXXCFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGS 561
F+MY YFSGQE LPVDQKAVLITG DSG GH L+KYLD+LGFTVFAGVLDE+GS
Sbjct: 61 LFSLSYFVMYTYFSGQELLPVDQKAVLITGCDSGFGHGLAKYLDELGFTVFAGVLDEQGS 120
Query: 562 GAEELRRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGEL 741
GAEELRRTCSK+LSVLQL+ITN+Q+I+ A+SKV EK+QN+GLWAV+NNAG+LG P DGEL
Sbjct: 121 GAEELRRTCSKNLSVLQLNITNTQEIKAAYSKVKEKLQNKGLWAVINNAGVLGLPTDGEL 180
Query: 742 IPMTQYKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAAL 921
IPMT+YKRCMAVNFFGAVEVTK FLPLLRKSKGRLVNISSMAGGVPM+KMAAY S+KAAL
Sbjct: 181 IPMTEYKRCMAVNFFGAVEVTKVFLPLLRKSKGRLVNISSMAGGVPMQKMAAYGSSKAAL 240
Query: 922 TMFSAVMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDY 1101
MFS+++R+ELSKWGVKVSVIQPG F+TNI+GTS +W+KLE+ +LD+L+P +QEDYGQDY
Sbjct: 241 IMFSSILRQELSKWGVKVSVIQPGGFKTNISGTSQMWEKLERTVLDNLSPEVQEDYGQDY 300
Query: 1102 ILKQRSFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTPEK 1230
IL +RSFL M S++PD+SPVLLDV+HAISA+SP+AFY P K
Sbjct: 301 ILSERSFLNLMKTSTDPDISPVLLDVRHAISAQSPFAFYAPGK 343
>ref|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus].
Length = 404
Score = 208 bits (530), Expect = 7e-54
Identities = 115/263 (43%), Positives = 152/263 (57%)
Frame = +1
Query: 436 LPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQL 615
LPV +AVLITG DSG G+A +K LD +GFTV A VLD GA ELR CS L +LQ+
Sbjct: 78 LPVATRAVLITGCDSGFGNATAKKLDTMGFTVLATVLDLNSPGALELRACCSSRLKLLQM 137
Query: 616 DITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAV 795
D+T I + GLW +VNNAG F D EL P+ ++ CM VNFFGA+
Sbjct: 138 DLTKPGDISRVLEFTKVHTPSTGLWGLVNNAGQNIFVADAELCPVATFRTCMEVNFFGAL 197
Query: 796 EVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKV 975
E+TK LPLLR+S GR+V +SS AG +P +AAY ++KAAL + EL WGVKV
Sbjct: 198 EMTKGLLPLLRRSSGRIVTVSSPAGDMPFPCLAAYGTSKAALALLMGNFSCELLPWGVKV 257
Query: 976 SVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPD 1155
S+IQP F+T W++ ++ +L L L + YG+DYI + + PD
Sbjct: 258 SIIQPACFKTESVKDVHQWEERKQQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQALPD 317
Query: 1156 VSPVLLDVQHAISAKSPYAFYTP 1224
+SPV+ + A+ A P Y P
Sbjct: 318 LSPVVDAITDALLAAQPLRRYYP 340
>ref|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos
taurus].
Length = 344
Score = 182 bits (462), Expect = 6e-46
Identities = 107/268 (39%), Positives = 158/268 (58%), Gaps = 6/268 (2%)
Frame = +1
Query: 439 PVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVL--DEKGSGAEELRRTCSKHLSVLQ 612
PV KAVLITG DSG G +L+K+L GF VFAG L D+ G +EL S L +Q
Sbjct: 52 PVGSKAVLITGCDSGFGFSLAKHLHSEGFLVFAGCLMKDKGSDGVKELDSMKSDRLRTVQ 111
Query: 613 LDITNSQQIRDAHSKVMEKVQN--RGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFF 786
L++ S+++ A + +++ +GLW +VNNAGI F D E M YK VN +
Sbjct: 112 LNVCKSEEVDKAAEVIRSSLEDPEKGLWGLVNNAGISTFG-DVEFTSMETYKEVAEVNLW 170
Query: 787 GAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWG 966
G V VTKAFLPL+R++KGR+VNISSM G + + Y TK + FS +R E+ G
Sbjct: 171 GTVRVTKAFLPLIRRAKGRVVNISSMMGRMANVARSPYCITKFGVEAFSDCLRYEMHPLG 230
Query: 967 VKVSVIQPGSF--QTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSN 1140
VKVSV++PG+F T++ G ++ + + ++L +++DYG+ Y ++ + ++
Sbjct: 231 VKVSVVEPGNFIAATSLYGGTERIQAIANKMWEELPEVVRQDYGRKYFDEKVARMESYCT 290
Query: 1141 SSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
S D SPV+ V HA++A +PY Y P
Sbjct: 291 SGSTDTSPVIKAVTHALTATTPYTRYHP 318
>ref|NP_777158.1| dehydrogenase/reductase SDR family member 9 precursor [Bos taurus].
Length = 319
Score = 157 bits (396), Expect = 2e-38
Identities = 90/278 (32%), Positives = 155/278 (55%)
Frame = +1
Query: 397 CFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEEL 576
C ++ Y + + K + ITG D+G G+ ++ DK GF V A L E GS A L
Sbjct: 12 CGFLWNYKRQLKIANITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTA--L 69
Query: 577 RRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQ 756
+ S+ L + LD+T+ + ++ A V +V +GLW ++NNAGILG + + +
Sbjct: 70 KAETSERLHTVLLDVTDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLAPNDWLTVED 129
Query: 757 YKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSA 936
Y+ + VN FG + VT LPL++K++GR++N+SS+ G + YS +K A+ F+
Sbjct: 130 YREPVEVNLFGLISVTLNMLPLVKKARGRIINVSSIGGRLAFGG-GGYSPSKYAVEGFND 188
Query: 937 VMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQR 1116
+R+++ +GV V+ I+PG F+TN++ +K + I L+P++++ YG+ YI K
Sbjct: 189 SLRRDMKAFGVHVACIEPGLFKTNLSDPEKTAEK-KLAIWKHLSPDIKQQYGESYIEKSL 247
Query: 1117 SFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTPEK 1230
LK ++ D+S V+ + HA+++ P Y K
Sbjct: 248 EQLKGTASFVNVDLSLVVECMDHALTSLFPKTRYAAGK 285
>ref|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus].
Length = 317
Score = 156 bits (395), Expect = 3e-38
Identities = 95/260 (36%), Positives = 148/260 (56%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K V ITG DSG G+ L++ LD G V AG L E+G AE+LR S L + LD+
Sbjct: 27 LQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGCLTEQG--AEQLRNQTSDRLQTVILDV 84
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEV 801
T ++ I A V E V +RGLW +VNNAGI E I + Y+ + VN G +EV
Sbjct: 85 TKTESIAAATEWVKECVGDRGLWGLVNNAGIFHSHGYAEWIKIETYRDTLRVNLIGVIEV 144
Query: 802 TKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV 981
T + LPL+RK++GR+VN+SS+ G + A YS +K + FS ++R+EL +GVKVS+
Sbjct: 145 TLSMLPLVRKAQGRIVNVSSILGRIAFFG-AVYSCSKYGVEAFSDILRRELQHFGVKVSM 203
Query: 982 IQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVS 1161
++PG F+T + + ++ K I + +++E YGQ + +K S +++
Sbjct: 204 VEPGYFRTAMTDWQK-FSEIMKQIWKETPAHIKETYGQKFFDAYHDLMKQGLLSCSTNLN 262
Query: 1162 PVLLDVQHAISAKSPYAFYT 1221
V ++HA+++ P Y+
Sbjct: 263 LVTDCMEHALTSVHPRTRYS 282
>ref|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus].
Length = 317
Score = 156 bits (394), Expect = 4e-38
Identities = 96/275 (34%), Positives = 151/275 (54%)
Frame = +1
Query: 400 FLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELR 579
+L+ Y Q + K V ITG DSG G+ L++ LD G V A L EKG AE+LR
Sbjct: 13 YLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEKG--AEQLR 70
Query: 580 RTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQY 759
S L + LD+T + + A V E+V +RGLW +VNNAGI E + +
Sbjct: 71 NQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDF 130
Query: 760 KRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAV 939
+ + VN G ++VT + LPL+RK++GR+VN+SS+ G V + Y +K + FS
Sbjct: 131 MKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDS 189
Query: 940 MRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRS 1119
+R+ELS +GVKV +I+PG F+T + L + + + +P ++E YG+ ++
Sbjct: 190 LRRELSYFGVKVVMIEPGYFKTAVTSPKALSQGFQAS-WNQASPEIKELYGEKFMANLMK 248
Query: 1120 FLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
+ + +S D+S V ++HA++A P Y+P
Sbjct: 249 SVDLLETTSCQDLSLVTNCMEHALTACHPRTRYSP 283
>ref|NP_001077206.1| short-chain dehydrogenase/reductase family 9C member 7 [Bos taurus].
Length = 313
Score = 155 bits (393), Expect = 6e-38
Identities = 97/275 (35%), Positives = 155/275 (56%), Gaps = 2/275 (0%)
Frame = +1
Query: 406 MYAYFSGQEFLP-VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRR 582
MY +F + + K V ITG DSG G+ L++ L G V A ++G A++L++
Sbjct: 10 MYRWFKNCNLVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEG--AQKLQQ 67
Query: 583 TCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPI-DGELIPMTQY 759
S L + LD+T ++ I+ A V ++V +GLWA+VNNAG+ G P E + +
Sbjct: 68 DTSYQLQTILLDVTKTESIKAATQWVRDQVGEQGLWALVNNAGV-GLPSGPNEWLTKEDF 126
Query: 760 KRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAV 939
+ + VN G +EVT LP+++K++GR+VN+SS G V + Y +K + FS
Sbjct: 127 VKVINVNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIG-GGYCISKFGVEAFSDS 185
Query: 940 MRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRS 1119
+R+EL +GVKVS+I+PG+F+T I G L +K + + + L P +E YG++Y
Sbjct: 186 IRRELHYFGVKVSIIEPGNFRTAILGKDGL-EKHMRKLWERLPPETRESYGEEYFRIYTD 244
Query: 1120 FLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
LK ++P +S V ++HAI ++SP Y P
Sbjct: 245 NLKSTMQLADPRISEVTNSMEHAIVSRSPRIRYNP 279
>ref|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus].
Length = 318
Score = 146 bits (369), Expect = 3e-35
Identities = 93/267 (34%), Positives = 145/267 (54%), Gaps = 1/267 (0%)
Frame = +1
Query: 427 QEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSV 606
++ LP + ITG DSG G L+ LD+ GF V A L SGAE+L+R S L
Sbjct: 21 RQCLPASDAFIFITGCDSGFGRLLALRLDQRGFRVLASCLTP--SGAEDLQRVASSRLHT 78
Query: 607 LQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFF 786
LD+T+ Q IR A V V GL+ +VNNAG+ G ++R + VN
Sbjct: 79 TLLDVTDPQSIRQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNTL 138
Query: 787 GAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWG 966
G + VT A LPLL +++GR++NI+S+ G + Y +K L FS +R++++ +G
Sbjct: 139 GPIGVTLALLPLLLQARGRVINITSVLGRLAANG-GGYCVSKFGLEAFSDSLRRDVAPFG 197
Query: 967 VKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQ-RSFLKFMSNS 1143
V+VS+++PG F+T + L D L+ L P Q YG+ ++ K R + M+
Sbjct: 198 VRVSIVEPGFFRTPVTNLETLEDTLQA-CWARLPPATQALYGEAFLTKYLRVQQRIMNMI 256
Query: 1144 SEPDVSPVLLDVQHAISAKSPYAFYTP 1224
+PD++ V ++HA++A+ P Y+P
Sbjct: 257 CDPDLAKVSRCLEHALTARHPRTRYSP 283
>ref|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos taurus].
Length = 270
Score = 86.7 bits (213), Expect = 4e-17
Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 2/205 (0%)
Frame = +1
Query: 451 KAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDE-KGSGAE-ELRRTCSKHLSVLQLDIT 624
K V++TGG GIG + + + G V DE +G E EL T L D+T
Sbjct: 10 KVVIVTGGGRGIGAGIVRAFVESGAQVVICDKDEARGRAVERELPGTV-----FLLCDVT 64
Query: 625 NSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEVT 804
+ +R S+ + + L +VNNAG P E +++ + +N G +T
Sbjct: 65 REEDVRTLVSETIRRFGR--LDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLT 122
Query: 805 KAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSVI 984
K LP LRKS+G ++NISS+ G + + Y +TK A+T + + + S++GV+V+ I
Sbjct: 123 KLALPHLRKSRGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVRVNCI 182
Query: 985 QPGSFQTNIAGTSDLWDKLEKNILD 1059
PG+ T LW++L + D
Sbjct: 183 SPGNIWT------PLWEELAASTPD 201
>ref|NP_001039627.1| dehydrogenase/reductase SDR family member 7 [Bos taurus].
Length = 339
Score = 76.6 bits (187), Expect = 4e-14
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 11/196 (5%)
Frame = +1
Query: 457 VLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTC-------SKHLSVLQL 615
V +TG SGIG L+ L KLG ++ + E ++R C K + +L L
Sbjct: 53 VWVTGASSGIGEELAYQLSKLGVSLVLSA--RRMHELERVKRKCLENGNLKEKDILILPL 110
Query: 616 DITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGI--LGFPIDGELIPMTQYKRCMAVNFFG 789
D+T+ A V+++ + +VNN G+ +D L +K + +N+ G
Sbjct: 111 DLTDRSSHEMATKAVLQEFGRIDI--LVNNGGVSQRALCVDTSL---DVFKELIELNYLG 165
Query: 790 AVEVTKAFLP-LLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKW- 963
V +TK LP ++ + +G++V ++SM G + Y ++K AL F +R EL+ +
Sbjct: 166 TVSLTKCVLPHMIERKQGKIVTVNSMVGIIAAPLSTGYCASKHALRGFFNTLRSELATYP 225
Query: 964 GVKVSVIQPGSFQTNI 1011
G+ +S I PG Q+NI
Sbjct: 226 GITISNICPGPVQSNI 241
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,255,542
Number of extensions: 1285537
Number of successful extensions: 5049
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 4986
Number of HSP's successfully gapped: 48
Length of query: 424
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 319
Effective length of database: 14,207,134
Effective search space: 4532075746
Effective search space used: 4532075746
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013714
(1273 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrof... 617 e-180
Alignment gi|XP_003360960.1| PREDICTED: estradiol 17-beta-dehydrogenase 2... 265 4e-71
Alignment gi|XP_003355785.1| PREDICTED: estradiol 17-beta-dehydrogenase 2... 263 2e-70
Alignment gi|NP_999078.1| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 207 8e-54
Alignment gi|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus sc... 154 8e-38
Alignment gi|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR famil... 152 4e-37
Alignment gi|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reducta... 151 9e-37
Alignment gi|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen... 150 2e-36
Alignment gi|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen... 150 2e-36
Alignment gi|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like... 148 6e-36
>ref|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrofa].
Length = 388
Score = 617 bits (1592), Expect(2) = e-180
Identities = 315/346 (91%), Positives = 316/346 (91%)
Frame = +1
Query: 202 MGTFFSETGWLCLTVTAVLGAVILCKLKKNHRQEGRKMVXXXXXXXXXXXXXXXXXXXXX 381
MGTFFSETGWLCLTVTAVLGAVILCKLKKNHRQEGRKMV
Sbjct: 1 MGTFFSETGWLCLTVTAVLGAVILCKLKKNHRQEGRKMVCLAGLWGGACLLSLSLFWGLI 60
Query: 382 XXXXXCFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGS 561
CFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGF VFAGVLDEKGS
Sbjct: 61 LFSLSCFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFIVFAGVLDEKGS 120
Query: 562 GAEELRRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGEL 741
GAEELRRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGEL
Sbjct: 121 GAEELRRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGEL 180
Query: 742 IPMTQYKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAAL 921
IPMTQYKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAAL
Sbjct: 181 IPMTQYKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAAL 240
Query: 922 TMFSAVMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDY 1101
TMFSAVMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDY
Sbjct: 241 TMFSAVMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDY 300
Query: 1102 ILKQRSFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTPEKCLF 1239
ILKQRSFLKFMSNSSEPD+SPVLLDVQHAISAKSPYAFYTP K F
Sbjct: 301 ILKQRSFLKFMSNSSEPDISPVLLDVQHAISAKSPYAFYTPGKMSF 346
Score = 32.3 bits (72), Expect(2) = e-180
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 1227 KMSFLWLCFAFISPT 1271
KMSFLWLCFA SPT
Sbjct: 343 KMSFLWLCFASFSPT 357
>ref|XP_003360960.1| PREDICTED: estradiol 17-beta-dehydrogenase 2-like, partial [Sus
scrofa].
Length = 212
Score = 265 bits (677), Expect = 4e-71
Identities = 133/133 (100%), Positives = 133/133 (100%)
Frame = +1
Query: 469 GGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDITNSQQIRDA 648
GGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDITNSQQIRDA
Sbjct: 80 GGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDITNSQQIRDA 139
Query: 649 HSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEVTKAFLPLLR 828
HSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEVTKAFLPLLR
Sbjct: 140 HSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEVTKAFLPLLR 199
Query: 829 KSKGRLVNISSMA 867
KSKGRLVNISSMA
Sbjct: 200 KSKGRLVNISSMA 212
>ref|XP_003355785.1| PREDICTED: estradiol 17-beta-dehydrogenase 2-like [Sus scrofa].
Length = 191
Score = 263 bits (672), Expect = 2e-70
Identities = 135/161 (83%), Positives = 135/161 (83%)
Frame = +1
Query: 202 MGTFFSETGWLCLTVTAVLGAVILCKLKKNHRQEGRKMVXXXXXXXXXXXXXXXXXXXXX 381
MGTFFSETGWLCLTVTAVLGAVILCKLKKNHRQEGRKMV
Sbjct: 1 MGTFFSETGWLCLTVTAVLGAVILCKLKKNHRQEGRKMVCLAGLWGGACLLSLSLFWGLI 60
Query: 382 XXXXXCFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGS 561
CFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGS
Sbjct: 61 LFSLSCFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGS 120
Query: 562 GAEELRRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRG 684
GAEELRRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRG
Sbjct: 121 GAEELRRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRG 161
>ref|NP_999078.1| corticosteroid 11-beta-dehydrogenase isozyme 2 [Sus scrofa].
Length = 400
Score = 207 bits (528), Expect = 8e-54
Identities = 114/263 (43%), Positives = 151/263 (57%)
Frame = +1
Query: 436 LPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQL 615
LPV +AVLITG DSG G A +K LD +GFTV A VL+ GA+ELR CS L +LQ+
Sbjct: 78 LPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQM 137
Query: 616 DITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAV 795
D+T I + GLW +VNNAG D EL P+ Y+ CM VNFFG +
Sbjct: 138 DLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTL 197
Query: 796 EVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKV 975
E+TKA LPLLR+S GR+V +SS AG +P ++AY ++KAA+ + EL WGVKV
Sbjct: 198 EMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKV 257
Query: 976 SVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPD 1155
SVIQP F+T D W++ ++ +L L L + YG+DYI + PD
Sbjct: 258 SVIQPACFRTEAVKNVDQWEERKRQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQGLPD 317
Query: 1156 VSPVLLDVQHAISAKSPYAFYTP 1224
+SPV+ + A+ A P Y P
Sbjct: 318 LSPVVDAITDALLAAKPRHRYYP 340
>ref|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus scrofa].
Length = 317
Score = 154 bits (390), Expect = 8e-38
Identities = 92/258 (35%), Positives = 146/258 (56%)
Frame = +1
Query: 451 KAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDITNS 630
K V ITG DSG G+ L++ LD G V A L E+G A++LR+ S L + LD+T +
Sbjct: 30 KYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQG--AQQLRKQTSDRLETVLLDVTKT 87
Query: 631 QQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEVTKA 810
+ + A V E+V +RGLW +VNNAGI E + + + + VN G V+VT
Sbjct: 88 ESVAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVDVTLQ 147
Query: 811 FLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSVIQP 990
LPL+RK++GR+VN+SS+ G V + Y +K + FS +R+ELS +GVKV++I+P
Sbjct: 148 LLPLVRKTRGRVVNVSSVMGRVSLFG-GGYCLSKYGVEAFSDSLRRELSYFGVKVAMIEP 206
Query: 991 GSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVSPVL 1170
G F+TN+ + + K + +P +++ YG ++ + M S D+S V
Sbjct: 207 GFFKTNVTKPEAI-SQGYKTAWNQASPEIKDLYGDTFLALCEKAVCSMETSCNQDLSLVT 265
Query: 1171 LDVQHAISAKSPYAFYTP 1224
++HA+++ P Y+P
Sbjct: 266 DCMEHALTSCHPRTRYSP 283
>ref|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like isoform 1
[Sus scrofa].
Length = 319
Score = 152 bits (384), Expect = 4e-37
Identities = 89/278 (32%), Positives = 154/278 (55%)
Frame = +1
Query: 397 CFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEEL 576
C ++ Y + + K + ITG D+G G+ ++ DK GF V A L E GS A L
Sbjct: 12 CGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTA--L 69
Query: 577 RRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQ 756
+ S+ L + LD+T+ + ++ V +V +GLW ++NNAGILG + + +
Sbjct: 70 KAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVED 129
Query: 757 YKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSA 936
Y+ + VN FG + VT LPL++K++GR++N+SS+ G + Y+ +K A+ F+
Sbjct: 130 YREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGG-GGYAPSKYAVEGFND 188
Query: 937 VMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQR 1116
+R+++ +GV V+ I+PG F+T +A +K + I + L+P++++ YG+ YI K
Sbjct: 189 SLRRDMKAFGVHVACIEPGLFKTGLADPVKTAEK-KLAIWNHLSPDIRQQYGEGYIEKCL 247
Query: 1117 SFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTPEK 1230
S LK + D+S V+ + HA+++ P Y K
Sbjct: 248 SKLKGSKSFMNVDLSLVVECMDHALTSLFPKTRYAAGK 285
>ref|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reductase family 9C member
7-like [Sus scrofa].
Length = 313
Score = 151 bits (381), Expect = 9e-37
Identities = 96/275 (34%), Positives = 153/275 (55%), Gaps = 2/275 (0%)
Frame = +1
Query: 406 MYAYFSGQEFLP-VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRR 582
MY +F + + K V ITG DSG G+ L++ L G V A E+G A++L++
Sbjct: 10 MYRWFKNCNVVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTEEG--AQKLQQ 67
Query: 583 TCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPI-DGELIPMTQY 759
S L LD+T ++ I+ A V ++V +GLWA+VNNAG+ G P E + +
Sbjct: 68 DTSYRLQTTLLDVTKTESIKAAAQWVRDQVSEQGLWALVNNAGV-GLPSGPNEWLTKEDF 126
Query: 760 KRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAV 939
+ + VN G +EVT LP+++K++GR+VN+SS G V + Y +K + FS
Sbjct: 127 VKVINVNLVGLIEVTLHMLPMVKKARGRVVNMSSSGGRVAVIG-GGYCVSKFGVEAFSDS 185
Query: 940 MRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRS 1119
+R+EL +GVKVS+I+PG+++T+I G L ++ K + L ++ YG++Y
Sbjct: 186 IRRELHYFGVKVSIIEPGNYRTSILGKESLEMRMRK-MWARLPQETRDSYGEEYFHIYTD 244
Query: 1120 FLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
LK M +EP + V ++HAI ++SP Y P
Sbjct: 245 KLKNMMQLAEPRIRDVTNSMEHAIVSRSPRIRYNP 279
>ref|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform 2
[Sus scrofa].
Length = 337
Score = 150 bits (378), Expect = 2e-36
Identities = 96/276 (34%), Positives = 153/276 (55%), Gaps = 2/276 (0%)
Frame = +1
Query: 400 FLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELR 579
+L+ Y Q + K V ITG DSG G+ L++ LD G V A L E+G A++LR
Sbjct: 33 YLLRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQG--AQQLR 90
Query: 580 RTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQY 759
+ S L + LD+T ++ I A V E+V +RGLW +VNNAG E + +
Sbjct: 91 KQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETW 150
Query: 760 KRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAV 939
+ VN G EVT + LPL++K++GR+VN+SS+ G V A YSS+K + FS V
Sbjct: 151 IHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSSKHGVEAFSDV 209
Query: 940 MRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLE--KNILDDLTPNLQEDYGQDYILKQ 1113
+R EL +GVKVS+++PG F+T G +D+ E K + ++ ++++ YGQ +
Sbjct: 210 LRCELQHFGVKVSIVEPGYFRT---GMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAY 266
Query: 1114 RSFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYT 1221
+K +S +++ V ++HA+++ P Y+
Sbjct: 267 HDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYS 302
>ref|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform 1
[Sus scrofa].
Length = 317
Score = 150 bits (378), Expect = 2e-36
Identities = 96/276 (34%), Positives = 153/276 (55%), Gaps = 2/276 (0%)
Frame = +1
Query: 400 FLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELR 579
+L+ Y Q + K V ITG DSG G+ L++ LD G V A L E+G A++LR
Sbjct: 13 YLLRWYRERQMVSHLGDKYVFITGCDSGFGNLLARQLDVRGLRVLAACLTEQG--AQQLR 70
Query: 580 RTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQY 759
+ S L + LD+T ++ I A V E+V +RGLW +VNNAG E + +
Sbjct: 71 KQTSDRLETVLLDVTKTESIAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETW 130
Query: 760 KRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAV 939
+ VN G EVT + LPL++K++GR+VN+SS+ G V A YSS+K + FS V
Sbjct: 131 IHTLKVNLIGVTEVTLSMLPLVKKAQGRIVNVSSILGRVAFFG-AVYSSSKHGVEAFSDV 189
Query: 940 MRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLE--KNILDDLTPNLQEDYGQDYILKQ 1113
+R EL +GVKVS+++PG F+T G +D+ E K + ++ ++++ YGQ +
Sbjct: 190 LRCELQHFGVKVSIVEPGYFRT---GMTDVQKSSEAMKQVWKEVPAHIKDTYGQKFFDAY 246
Query: 1114 RSFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYT 1221
+K +S +++ V ++HA+++ P Y+
Sbjct: 247 HDVMKQGLSSCSTNLNLVTDCMEHALTSVHPRTRYS 282
>ref|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like [Sus scrofa].
Length = 318
Score = 148 bits (374), Expect = 6e-36
Identities = 96/267 (35%), Positives = 146/267 (54%), Gaps = 1/267 (0%)
Frame = +1
Query: 427 QEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSV 606
++ LP V ITG DSG G L+ LD+ GF V A L SGAE+L+R S L
Sbjct: 21 RQSLPTSDAFVFITGCDSGFGRLLALRLDQRGFRVLASCLTP--SGAEDLQRVASSRLHT 78
Query: 607 LQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFF 786
LD+T+ Q I+ A V V GL+ +VNNAG+ G +++ + VN
Sbjct: 79 TLLDVTDPQSIQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQQVLNVNTL 138
Query: 787 GAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWG 966
G + VT A LPLLR+++GR+VN+SS+ G + Y +K + FS +R++++ +G
Sbjct: 139 GPIGVTLALLPLLRQARGRVVNVSSVLGRLAANG-GGYCVSKFGVEAFSDSLRRDVAPFG 197
Query: 967 VKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQ-RSFLKFMSNS 1143
++VS+++PG FQT I L D + K L P Q YG+ Y+ K R FM+
Sbjct: 198 IRVSIVEPGFFQTPITNPESL-DNIIKTRWARLPPATQALYGEAYLTKYLRLQHHFMNLL 256
Query: 1144 SEPDVSPVLLDVQHAISAKSPYAFYTP 1224
S+ D++ V ++HA++A+ P Y+P
Sbjct: 257 SDLDLTKVSRCLEHALTARHPRTRYSP 283
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,058,598
Number of extensions: 823322
Number of successful extensions: 3280
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 3217
Number of HSP's successfully gapped: 45
Length of query: 424
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 322
Effective length of database: 8,804,438
Effective search space: 2835029036
Effective search space used: 2835029036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013714
(1273 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032316.2| estradiol 17-beta-dehydrogenase 2 [Mus musculus]. 404 e-113
Alignment gi|NP_032315.2| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 205 5e-53
Alignment gi|NP_001116155.1| D-beta-hydroxybutyrate dehydrogenase, mitoch... 177 2e-44
Alignment gi|NP_780386.3| D-beta-hydroxybutyrate dehydrogenase, mitochond... 177 2e-44
Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]. 164 2e-40
Alignment gi|NP_001144221.1| retinol dehydrogenase 7 [Mus musculus]. 164 2e-40
Alignment gi|NP_081577.1| short-chain dehydrogenase/reductase family 9C m... 161 9e-40
Alignment gi|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus muscul... 161 9e-40
Alignment gi|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus mu... 160 2e-39
Alignment gi|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain de... 160 2e-39
>ref|NP_032316.2| estradiol 17-beta-dehydrogenase 2 [Mus musculus].
Length = 381
Score = 404 bits (1038), Expect = e-113
Identities = 203/365 (55%), Positives = 260/365 (71%), Gaps = 9/365 (2%)
Frame = +1
Query: 202 MGTFFSETGWLCLTVTAVLGAVILCKLKKNHRQEGRKMVXXXXXXXXXXXXXXXXXXXXX 381
M F SE+ WLCL AVLG +LC + RQ + V
Sbjct: 1 MSPFASESAWLCLAAAAVLGGTLLCGCRSG-RQLRSQAVCLAGLWGGACLLSLSLLCTLF 59
Query: 382 XXXXXCFLM-YAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKG 558
CFL+ Y S Q+ LPVDQKAVL+TG DSG GH L+K+LDKLGFTVFAGVLD++G
Sbjct: 60 LLSVACFLLLYMSSSDQDLLPVDQKAVLVTGADSGFGHGLAKHLDKLGFTVFAGVLDKEG 119
Query: 559 SGAEELRRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGE 738
GAEELR+ CS+ LSVLQ+D+T +QI+DAHSKV EK+Q++GLWAVVNNAG+ PIDGE
Sbjct: 120 PGAEELRKHCSERLSVLQMDVTKPEQIKDAHSKVTEKIQDKGLWAVVNNAGVFHLPIDGE 179
Query: 739 LIPMTQYKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAA 918
LIPM+ Y++CMAVNFFG VEVTKAFLPLLRKSKGRLVN+SSM G VP++ +AY++TKAA
Sbjct: 180 LIPMSIYRKCMAVNFFGTVEVTKAFLPLLRKSKGRLVNVSSMGGTVPLQMTSAYAATKAA 239
Query: 919 LTMFSAVMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQD 1098
LTMFS ++R+EL KWGVKV I+PG F+TNI G+ D+WDK+EK ILD + ++QE+YGQD
Sbjct: 240 LTMFSTIIRQELDKWGVKVVTIKPGGFKTNITGSQDIWDKMEKEILDHFSKDIQENYGQD 299
Query: 1099 YILKQRSFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTPEK------CL--FCGSAL 1254
Y+ Q+ + + S PD++PVL D+QHAISA++P +FY P + CL +C ++L
Sbjct: 300 YVHTQKLIIPTLKERSNPDITPVLRDIQHAISARNPSSFYYPGRMAYLWVCLAAYCPTSL 359
Query: 1255 LSLAL 1269
L +
Sbjct: 360 LDYVI 364
>ref|NP_032315.2| corticosteroid 11-beta-dehydrogenase isozyme 2 [Mus musculus].
Length = 386
Score = 205 bits (522), Expect = 5e-53
Identities = 111/267 (41%), Positives = 159/267 (59%)
Frame = +1
Query: 436 LPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQL 615
LPV +AVLITG D+G G +K LD +GFTV A VLD GA ELR CS L +LQ+
Sbjct: 78 LPVATRAVLITGCDTGFGKETAKKLDAMGFTVLATVLDLNSPGALELRDLCSPRLKLLQM 137
Query: 616 DITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAV 795
D+T ++ I + GLW +VNNAG+ D EL P+ +++CM VNFFGA+
Sbjct: 138 DLTKAEDISRVLEITKAHTASTGLWGLVNNAGLNIVVADVELSPVATFRKCMEVNFFGAL 197
Query: 796 EVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKV 975
E+TK LPLLR S+GR+V + S AG +P +AAY ++KAA+ + EL WG+KV
Sbjct: 198 ELTKGLLPLLRHSRGRIVTVGSPAGDMPYPCLAAYGTSKAAIALLMDTFGCELLPWGIKV 257
Query: 976 SVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPD 1155
S+I+PG F+T+ +LW+K ++ +L ++ L + YG+DYI + PD
Sbjct: 258 SIIKPGCFKTDAVTNVNLWEKRKQLLLANIPRELLQAYGEDYIEHVHGQFLNSLRMALPD 317
Query: 1156 VSPVLLDVQHAISAKSPYAFYTPEKCL 1236
+SPV+ + A+ A P + Y P + L
Sbjct: 318 LSPVVDAIIDALLAAQPRSRYYPGRGL 344
>ref|NP_001116155.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 343
Score = 177 bits (449), Expect = 2e-44
Identities = 107/266 (40%), Positives = 157/266 (59%), Gaps = 8/266 (3%)
Frame = +1
Query: 451 KAVLITGGDSGIGHALSKYLDKLGFTVFAGVL--DEKGSGAEELRRTCSKHLSVLQLDIT 624
KA+LITG DSG G +L+K+L GF VFAG L D+ +G +EL S L +QL++
Sbjct: 56 KAILITGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVC 115
Query: 625 NSQQIRDAHSKVMEKVQN--RGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVE 798
NS+++ A + +++ +G+W +VNNAGI F + E M YK VN +G V
Sbjct: 116 NSEEVEKAVETIRSGLKDPEKGMWGLVNNAGISTFG-EVEFTSMETYKEVAEVNLWGTVR 174
Query: 799 VTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVS 978
TK+FLPLLR++KGR+VNISSM G + + Y TK + FS +R E+ GVKVS
Sbjct: 175 TTKSFLPLLRRAKGRVVNISSMLGRMANPARSPYCITKFGIEAFSDCLRYEMHPLGVKVS 234
Query: 979 VIQPGSFQTNIAGTS----DLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSS 1146
V++PG+F IA TS + + K + DDL +++DYG+ Y ++ + ++ NS
Sbjct: 235 VVEPGNF---IAATSLYSPERIQAIAKKMWDDLPEVVRKDYGRKYFDEKIAKMETYCNSG 291
Query: 1147 EPDVSPVLLDVQHAISAKSPYAFYTP 1224
D S V+ V HA++A +PY Y P
Sbjct: 292 STDTSSVINAVTHALTAATPYTRYHP 317
>ref|NP_780386.3| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 343
Score = 177 bits (449), Expect = 2e-44
Identities = 107/266 (40%), Positives = 157/266 (59%), Gaps = 8/266 (3%)
Frame = +1
Query: 451 KAVLITGGDSGIGHALSKYLDKLGFTVFAGVL--DEKGSGAEELRRTCSKHLSVLQLDIT 624
KA+LITG DSG G +L+K+L GF VFAG L D+ +G +EL S L +QL++
Sbjct: 56 KAILITGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVC 115
Query: 625 NSQQIRDAHSKVMEKVQN--RGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVE 798
NS+++ A + +++ +G+W +VNNAGI F + E M YK VN +G V
Sbjct: 116 NSEEVEKAVETIRSGLKDPEKGMWGLVNNAGISTFG-EVEFTSMETYKEVAEVNLWGTVR 174
Query: 799 VTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVS 978
TK+FLPLLR++KGR+VNISSM G + + Y TK + FS +R E+ GVKVS
Sbjct: 175 TTKSFLPLLRRAKGRVVNISSMLGRMANPARSPYCITKFGIEAFSDCLRYEMHPLGVKVS 234
Query: 979 VIQPGSFQTNIAGTS----DLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSS 1146
V++PG+F IA TS + + K + DDL +++DYG+ Y ++ + ++ NS
Sbjct: 235 VVEPGNF---IAATSLYSPERIQAIAKKMWDDLPEVVRKDYGRKYFDEKIAKMETYCNSG 291
Query: 1147 EPDVSPVLLDVQHAISAKSPYAFYTP 1224
D S V+ V HA++A +PY Y P
Sbjct: 292 STDTSSVINAVTHALTAATPYTRYHP 317
>ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus].
Length = 316
Score = 164 bits (414), Expect = 2e-40
Identities = 98/260 (37%), Positives = 154/260 (59%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K V ITG DSG G+ L++ LD+ G V A L EKG AE+LR S L + LD+
Sbjct: 27 LQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKG--AEQLRNKTSDRLETVILDV 84
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEV 801
T ++ I A V E+V NRGLW +VNNAGI F I+ E + + + VN G +EV
Sbjct: 85 TKTESIVAATQWVKERVGNRGLWGLVNNAGICVFAIN-EWLKKEDFANILDVNLLGMIEV 143
Query: 802 TKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV 981
T + LPL+RK++GR+VNISS G V + Y +K + FS +R+E+S +GVKV++
Sbjct: 144 TLSMLPLVRKARGRVVNISSSMGRVSL-CGGGYCISKYGVEAFSDSLRREISYFGVKVAI 202
Query: 982 IQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVS 1161
I+PG F+TN++ L +EK + D + ++E Y ++++ ++ ++++ D+S
Sbjct: 203 IEPGGFRTNVSNYERLSHSIEK-LWDQTSSEVKEVYDKNFLDSYIKAIQSLTDTCSDDLS 261
Query: 1162 PVLLDVQHAISAKSPYAFYT 1221
V ++HA++A P Y+
Sbjct: 262 VVTDCMEHALTACHPRTRYS 281
>ref|NP_001144221.1| retinol dehydrogenase 7 [Mus musculus].
Length = 316
Score = 164 bits (414), Expect = 2e-40
Identities = 98/260 (37%), Positives = 154/260 (59%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K V ITG DSG G+ L++ LD+ G V A L EKG AE+LR S L + LD+
Sbjct: 27 LQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKG--AEQLRNKTSDRLETVILDV 84
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEV 801
T ++ I A V E+V NRGLW +VNNAGI F I+ E + + + VN G +EV
Sbjct: 85 TKTESIVAATQWVKERVGNRGLWGLVNNAGICVFAIN-EWLKKEDFANILDVNLLGMIEV 143
Query: 802 TKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV 981
T + LPL+RK++GR+VNISS G V + Y +K + FS +R+E+S +GVKV++
Sbjct: 144 TLSMLPLVRKARGRVVNISSSMGRVSL-CGGGYCISKYGVEAFSDSLRREISYFGVKVAI 202
Query: 982 IQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVS 1161
I+PG F+TN++ L +EK + D + ++E Y ++++ ++ ++++ D+S
Sbjct: 203 IEPGGFRTNVSNYERLSHSIEK-LWDQTSSEVKEVYDKNFLDSYIKAIQSLTDTCSDDLS 261
Query: 1162 PVLLDVQHAISAKSPYAFYT 1221
V ++HA++A P Y+
Sbjct: 262 VVTDCMEHALTACHPRTRYS 281
>ref|NP_081577.1| short-chain dehydrogenase/reductase family 9C member 7 [Mus
musculus].
Length = 313
Score = 161 bits (408), Expect = 9e-40
Identities = 97/275 (35%), Positives = 159/275 (57%), Gaps = 2/275 (0%)
Frame = +1
Query: 406 MYAYFSGQEFLP-VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRR 582
MY +F + + +K V ITG DSG G+ L+K L G V A L E+G A++L +
Sbjct: 10 MYRWFKNCNLVKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEG--AQKLLQ 67
Query: 583 TCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPI-DGELIPMTQY 759
S L LD+T S+ +++A V ++V +GLWA+VNNAG+ G P E + + +
Sbjct: 68 DTSHQLQTFLLDVTKSENVKEAAQWVRDQVGEQGLWALVNNAGV-GLPSGPNEWLTIKDF 126
Query: 760 KRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAV 939
+ + +N G ++VT LP+++K++GR+VN+SS G V + Y +K + FS
Sbjct: 127 VKVININLVGLIDVTLNMLPMIKKARGRVVNMSSSGGRVAIFG-GGYCVSKFGVEAFSDS 185
Query: 940 MRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRS 1119
+R+EL +GVKVS+I+PG+++T+I G L +++K + D L ++ YG++Y
Sbjct: 186 IRRELHFFGVKVSIIEPGNYKTSILGQEALESRMKK-LWDRLPQETRDSYGEEYFQTYTK 244
Query: 1120 FLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
L + S+EP +S V ++HAI ++SP Y P
Sbjct: 245 KLVNLMRSAEPRISDVTNSMEHAIVSRSPRIRYNP 279
>ref|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus musculus].
Length = 317
Score = 161 bits (408), Expect = 9e-40
Identities = 100/260 (38%), Positives = 147/260 (56%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K V ITG DSG G+ L++ LD+ G V A L EKG AEELR S L + LD+
Sbjct: 27 LQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKG--AEELRNKTSDRLETVILDV 84
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEV 801
T ++ I A V E+V NRGLW +VNNAGI E + + R + VN G +EV
Sbjct: 85 TKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSGPNEWMKKQDFARVLDVNLLGMIEV 144
Query: 802 TKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV 981
T + LPL+RK++GR+VN+SS+ G + Y +K + FS +R+ELS +GVKV++
Sbjct: 145 TLSMLPLVRKARGRVVNVSSVMGRMSFFG-GGYCISKYGVEAFSDSLRRELSYFGVKVAI 203
Query: 982 IQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVS 1161
I+PG F+T + +SD K I D + ++E YG+ ++L L + D+S
Sbjct: 204 IEPGGFKTCVT-SSDRLSSNTKMIWDKASSEVKEIYGEKFLLFYLKNLNELDKRCNKDLS 262
Query: 1162 PVLLDVQHAISAKSPYAFYT 1221
V ++HA++A P Y+
Sbjct: 263 VVTDCMEHALTACHPRTRYS 282
>ref|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus musculus].
Length = 318
Score = 160 bits (406), Expect = 2e-39
Identities = 98/261 (37%), Positives = 147/261 (56%), Gaps = 1/261 (0%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K V ITG DSG G+ L++ LD+ G V A L EKG AEELR S L + LD+
Sbjct: 27 LQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEKG--AEELRNKTSDRLETVILDV 84
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPID-GELIPMTQYKRCMAVNFFGAVE 798
T ++ I A V E+V NRGLW +VNNAGI P+ + + + + VN G +E
Sbjct: 85 TKTESIVAATQWVKERVGNRGLWGLVNNAGI-SVPLGLSQWMNKQNFASVLDVNLLGMIE 143
Query: 799 VTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVS 978
VT LPL+RK++GR+VN+SS+ G V + Y +K + FS +R+ELS +GVKV+
Sbjct: 144 VTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCISKYGVEAFSDSLRRELSYFGVKVA 203
Query: 979 VIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDV 1158
+I+PG F T +A ++ L + + D + ++E YG+ Y+ L + D+
Sbjct: 204 IIEPGFFLTGMASSARLSSNTQM-LWDQTSSEIREIYGEKYLAFYLKSLNELDKRCNKDL 262
Query: 1159 SPVLLDVQHAISAKSPYAFYT 1221
S V ++HA++A P Y+
Sbjct: 263 SLVTDCMEHALTACHPRTRYS 283
>ref|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like [Mus
musculus].
Length = 318
Score = 160 bits (405), Expect = 2e-39
Identities = 95/260 (36%), Positives = 146/260 (56%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K V ITG SG G+ L++ LD+ G V A E+G AEELRR S+ L + LD+
Sbjct: 27 LQDKYVFITGCGSGFGNLLARQLDRRGMRVLAACRKEEG--AEELRRKTSERLETVILDV 84
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEV 801
T ++ I A V E+V NRGLW +VNNAGI E + + + VN G +EV
Sbjct: 85 TKTENIVAATQWVKERVGNRGLWGLVNNAGISVPSGPNEWMKKQDFASVLDVNLLGLIEV 144
Query: 802 TKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV 981
T + LPL+RK++GR+VN+SS+ G V + Y +K + FS +R+EL +GVKV++
Sbjct: 145 TLSMLPLVRKARGRVVNVSSILGRVSLGGSGGYCISKYGIEAFSDSLRRELRYFGVKVAI 204
Query: 982 IQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVS 1161
I+PG F T +A ++ L ++ + D + ++E YG+ Y+ L + D+S
Sbjct: 205 IEPGFFLTGMASSARLCSNIQM-LWDQTSSEIREIYGEKYLASYLKNLNELDQRCNKDLS 263
Query: 1162 PVLLDVQHAISAKSPYAFYT 1221
V ++HA++A P Y+
Sbjct: 264 VVTDCMEHALTACHPRTRYS 283
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,147,752
Number of extensions: 1110410
Number of successful extensions: 4253
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 4166
Number of HSP's successfully gapped: 48
Length of query: 424
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 320
Effective length of database: 12,493,815
Effective search space: 3998020800
Effective search space used: 3998020800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013714
(1273 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002144.1| estradiol 17-beta-dehydrogenase 2 [Homo sapiens]. 442 e-124
Alignment gi|NP_000187.3| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 195 7e-50
Alignment gi|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 172 5e-43
Alignment gi|NP_976059.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 172 5e-43
Alignment gi|NP_004042.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 172 5e-43
Alignment gi|NP_683695.1| short-chain dehydrogenase/reductase family 9C m... 157 2e-38
Alignment gi|NP_001135743.1| dehydrogenase/reductase SDR family member 9 ... 157 3e-38
Alignment gi|NP_954674.1| dehydrogenase/reductase SDR family member 9 pre... 157 3e-38
Alignment gi|NP_001135742.1| dehydrogenase/reductase SDR family member 9 ... 157 3e-38
Alignment gi|NP_005762.2| dehydrogenase/reductase SDR family member 9 pre... 157 3e-38
>ref|NP_002144.1| estradiol 17-beta-dehydrogenase 2 [Homo sapiens].
Length = 387
Score = 442 bits (1136), Expect = e-124
Identities = 222/343 (64%), Positives = 259/343 (75%)
Frame = +1
Query: 202 MGTFFSETGWLCLTVTAVLGAVILCKLKKNHRQEGRKMVXXXXXXXXXXXXXXXXXXXXX 381
M TFFS+T W+CL V VL + CK KK+ Q MV
Sbjct: 1 MSTFFSDTAWICLAVPTVLCGTVFCKYKKSSGQLWSWMVCLAGLCAVCLLILSPFWGLIL 60
Query: 382 XXXXXCFLMYAYFSGQEFLPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGS 561
CFLMY Y SGQE LPVDQKAVL+TGGD G+GHAL KYLD+LGFTVFAGVL+E G
Sbjct: 61 FSVS-CFLMYTYLSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVLNENGP 119
Query: 562 GAEELRRTCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGEL 741
GAEELRRTCS LSVLQ+DIT QI+DA+SKV +Q+RGLWAV+NNAG+LGFP DGEL
Sbjct: 120 GAEELRRTCSPRLSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNAGVLGFPTDGEL 179
Query: 742 IPMTQYKRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAAL 921
+ MT YK+CMAVNFFG VEVTK FLPLLRKSKGRLVN+SSM GG PME++A+Y S+KAA+
Sbjct: 180 LLMTDYKQCMAVNFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPMERLASYGSSKAAV 239
Query: 922 TMFSAVMRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDY 1101
TMFS+VMR ELSKWG+KV+ IQPG F TNIAGTSD W+KLEK+ILD L +QEDYGQDY
Sbjct: 240 TMFSSVMRLELSKWGIKVASIQPGGFLTNIAGTSDKWEKLEKDILDHLPAEVQEDYGQDY 299
Query: 1102 ILKQRSFLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTPEK 1230
IL QR+FL +++ + D SPVL D+QHAI AKSP+A+YTP K
Sbjct: 300 ILAQRNFLLLINSLASKDFSPVLRDIQHAILAKSPFAYYTPGK 342
>ref|NP_000187.3| corticosteroid 11-beta-dehydrogenase isozyme 2 [Homo sapiens].
Length = 405
Score = 195 bits (496), Expect = 7e-50
Identities = 109/263 (41%), Positives = 147/263 (55%)
Frame = +1
Query: 436 LPVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQL 615
LPV +AVLITG DSG G +K LD +GFTV A VL+ GA ELR CS L +LQ+
Sbjct: 78 LPVATRAVLITGCDSGFGKETAKKLDSMGFTVLATVLELNSPGAIELRTCCSPRLRLLQM 137
Query: 616 DITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAV 795
D+T I + GLW +VNNAG D EL P+ ++ CM VNFFGA+
Sbjct: 138 DLTKPGDISRVLEFTKAHTTSTGLWGLVNNAGHNEVVADAELSPVATFRSCMEVNFFGAL 197
Query: 796 EVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKV 975
E+TK LPLLR S+GR+V + S AG +P + AY ++KAA+ + EL WGVKV
Sbjct: 198 ELTKGLLPLLRSSRGRIVTVGSPAGDMPYPCLGAYGTSKAAVALLMDTFSCELLPWGVKV 257
Query: 976 SVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPD 1155
S+IQPG F+T W+K ++ +L +L L + YG+DYI + D
Sbjct: 258 SIIQPGCFKTESVRNVGQWEKRKQLLLANLPQELLQAYGKDYIEHLHGQFLHSLRLAMSD 317
Query: 1156 VSPVLLDVQHAISAKSPYAFYTP 1224
++PV+ + A+ A P Y P
Sbjct: 318 LTPVVDAITDALLAARPRRRYYP 340
>ref|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 172 bits (437), Expect = 5e-43
Identities = 104/270 (38%), Positives = 160/270 (59%), Gaps = 8/270 (2%)
Frame = +1
Query: 439 PVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVL--DEKGSGAEELRRTCSKHLSVLQ 612
PV KAVL+TG DSG G +L+K+L GF VFAG L D+ G +EL S L +Q
Sbjct: 52 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111
Query: 613 LDITNSQQIRDAHSKVMEKVQN--RGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFF 786
L++ +S+++ V +++ +G+W +VNNAGI F + E + YK+ VN +
Sbjct: 112 LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFG-EVEFTSLETYKQVAEVNLW 170
Query: 787 GAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWG 966
G V +TK+FLPL+R++KGR+VNISSM G + + Y TK + FS +R E+ G
Sbjct: 171 GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230
Query: 967 VKVSVIQPGSFQTNIAGTS----DLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFM 1134
VKVSV++PG+F IA TS + + K + ++L +++DYG+ Y ++ + ++
Sbjct: 231 VKVSVVEPGNF---IAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETY 287
Query: 1135 SNSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
+S D SPV+ V HA++A +PY Y P
Sbjct: 288 CSSGSTDTSPVIDAVTHALTATTPYTRYHP 317
>ref|NP_976059.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 172 bits (437), Expect = 5e-43
Identities = 104/270 (38%), Positives = 160/270 (59%), Gaps = 8/270 (2%)
Frame = +1
Query: 439 PVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVL--DEKGSGAEELRRTCSKHLSVLQ 612
PV KAVL+TG DSG G +L+K+L GF VFAG L D+ G +EL S L +Q
Sbjct: 52 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111
Query: 613 LDITNSQQIRDAHSKVMEKVQN--RGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFF 786
L++ +S+++ V +++ +G+W +VNNAGI F + E + YK+ VN +
Sbjct: 112 LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFG-EVEFTSLETYKQVAEVNLW 170
Query: 787 GAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWG 966
G V +TK+FLPL+R++KGR+VNISSM G + + Y TK + FS +R E+ G
Sbjct: 171 GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230
Query: 967 VKVSVIQPGSFQTNIAGTS----DLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFM 1134
VKVSV++PG+F IA TS + + K + ++L +++DYG+ Y ++ + ++
Sbjct: 231 VKVSVVEPGNF---IAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETY 287
Query: 1135 SNSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
+S D SPV+ V HA++A +PY Y P
Sbjct: 288 CSSGSTDTSPVIDAVTHALTATTPYTRYHP 317
>ref|NP_004042.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 172 bits (437), Expect = 5e-43
Identities = 104/270 (38%), Positives = 160/270 (59%), Gaps = 8/270 (2%)
Frame = +1
Query: 439 PVDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVL--DEKGSGAEELRRTCSKHLSVLQ 612
PV KAVL+TG DSG G +L+K+L GF VFAG L D+ G +EL S L +Q
Sbjct: 52 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111
Query: 613 LDITNSQQIRDAHSKVMEKVQN--RGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFF 786
L++ +S+++ V +++ +G+W +VNNAGI F + E + YK+ VN +
Sbjct: 112 LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFG-EVEFTSLETYKQVAEVNLW 170
Query: 787 GAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWG 966
G V +TK+FLPL+R++KGR+VNISSM G + + Y TK + FS +R E+ G
Sbjct: 171 GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230
Query: 967 VKVSVIQPGSFQTNIAGTS----DLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFM 1134
VKVSV++PG+F IA TS + + K + ++L +++DYG+ Y ++ + ++
Sbjct: 231 VKVSVVEPGNF---IAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETY 287
Query: 1135 SNSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
+S D SPV+ V HA++A +PY Y P
Sbjct: 288 CSSGSTDTSPVIDAVTHALTATTPYTRYHP 317
>ref|NP_683695.1| short-chain dehydrogenase/reductase family 9C member 7 [Homo
sapiens].
Length = 313
Score = 157 bits (398), Expect = 2e-38
Identities = 99/275 (36%), Positives = 155/275 (56%), Gaps = 2/275 (0%)
Frame = +1
Query: 406 MYAYFSGQEFLP-VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRR 582
MY +F + + +K V ITG DSG G+ L+K L G V A E+GS ++L+R
Sbjct: 10 MYRWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGS--QKLQR 67
Query: 583 TCSKHLSVLQLDITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPI-DGELIPMTQY 759
S L LD+T S+ I+ A V +KV +GLWA+VNNAG+ G P E + +
Sbjct: 68 DTSYRLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGV-GLPSGPNEWLTKDDF 126
Query: 760 KRCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAV 939
+ + VN G +EVT LP++++++GR+VN+SS G V + Y +K + FS
Sbjct: 127 VKVINVNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAVIG-GGYCVSKFGVEAFSDS 185
Query: 940 MRKELSKWGVKVSVIQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRS 1119
+R+EL +GVKV +I+PG+++T I G +L ++ K + + L ++ YG+DY
Sbjct: 186 IRRELYYFGVKVCIIEPGNYRTAILGKENLESRMRK-LWERLPQETRDSYGEDYFRIYTD 244
Query: 1120 FLKFMSNSSEPDVSPVLLDVQHAISAKSPYAFYTP 1224
LK + +EP V V+ ++HAI ++SP Y P
Sbjct: 245 KLKNIMQVAEPRVRDVINSMEHAIVSRSPRIRYNP 279
>ref|NP_001135743.1| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 157 bits (396), Expect = 3e-38
Identities = 88/263 (33%), Positives = 151/263 (57%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K + ITG DSG G+ ++ DK GF V A L E GS A L+ S+ L + LD+
Sbjct: 27 ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTA--LKAETSERLRTVLLDV 84
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEV 801
T+ + ++ V +V +GLW ++NNAG+ G + + + Y+ + VN FG + V
Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144
Query: 802 TKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV 981
T LPL++K++GR++N+SS+ G + + Y+ +K A+ F+ +R+++ +GV VS
Sbjct: 145 TLNMLPLVKKAQGRVINVSSVGGRLAIVG-GGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203
Query: 982 IQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVS 1161
I+PG F+TN+A + +K + I + L+P++++ YG+ YI K LK + D+S
Sbjct: 204 IEPGLFKTNLADPVKVIEK-KLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLS 262
Query: 1162 PVLLDVQHAISAKSPYAFYTPEK 1230
PV+ + HA+++ P Y K
Sbjct: 263 PVVECMDHALTSLFPKTHYAAGK 285
>ref|NP_954674.1| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 157 bits (396), Expect = 3e-38
Identities = 88/263 (33%), Positives = 151/263 (57%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K + ITG DSG G+ ++ DK GF V A L E GS A L+ S+ L + LD+
Sbjct: 27 ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTA--LKAETSERLRTVLLDV 84
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEV 801
T+ + ++ V +V +GLW ++NNAG+ G + + + Y+ + VN FG + V
Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144
Query: 802 TKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV 981
T LPL++K++GR++N+SS+ G + + Y+ +K A+ F+ +R+++ +GV VS
Sbjct: 145 TLNMLPLVKKAQGRVINVSSVGGRLAIVG-GGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203
Query: 982 IQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVS 1161
I+PG F+TN+A + +K + I + L+P++++ YG+ YI K LK + D+S
Sbjct: 204 IEPGLFKTNLADPVKVIEK-KLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLS 262
Query: 1162 PVLLDVQHAISAKSPYAFYTPEK 1230
PV+ + HA+++ P Y K
Sbjct: 263 PVVECMDHALTSLFPKTHYAAGK 285
>ref|NP_001135742.1| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 157 bits (396), Expect = 3e-38
Identities = 88/263 (33%), Positives = 151/263 (57%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K + ITG DSG G+ ++ DK GF V A L E GS A L+ S+ L + LD+
Sbjct: 27 ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTA--LKAETSERLRTVLLDV 84
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEV 801
T+ + ++ V +V +GLW ++NNAG+ G + + + Y+ + VN FG + V
Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144
Query: 802 TKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV 981
T LPL++K++GR++N+SS+ G + + Y+ +K A+ F+ +R+++ +GV VS
Sbjct: 145 TLNMLPLVKKAQGRVINVSSVGGRLAIVG-GGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203
Query: 982 IQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVS 1161
I+PG F+TN+A + +K + I + L+P++++ YG+ YI K LK + D+S
Sbjct: 204 IEPGLFKTNLADPVKVIEK-KLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLS 262
Query: 1162 PVLLDVQHAISAKSPYAFYTPEK 1230
PV+ + HA+++ P Y K
Sbjct: 263 PVVECMDHALTSLFPKTHYAAGK 285
>ref|NP_005762.2| dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens].
Length = 319
Score = 157 bits (396), Expect = 3e-38
Identities = 88/263 (33%), Positives = 151/263 (57%)
Frame = +1
Query: 442 VDQKAVLITGGDSGIGHALSKYLDKLGFTVFAGVLDEKGSGAEELRRTCSKHLSVLQLDI 621
+ K + ITG DSG G+ ++ DK GF V A L E GS A L+ S+ L + LD+
Sbjct: 27 ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTESGSTA--LKAETSERLRTVLLDV 84
Query: 622 TNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEV 801
T+ + ++ V +V +GLW ++NNAG+ G + + + Y+ + VN FG + V
Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144
Query: 802 TKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV 981
T LPL++K++GR++N+SS+ G + + Y+ +K A+ F+ +R+++ +GV VS
Sbjct: 145 TLNMLPLVKKAQGRVINVSSVGGRLAIVG-GGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203
Query: 982 IQPGSFQTNIAGTSDLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDVS 1161
I+PG F+TN+A + +K + I + L+P++++ YG+ YI K LK + D+S
Sbjct: 204 IEPGLFKTNLADPVKVIEK-KLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLS 262
Query: 1162 PVLLDVQHAISAKSPYAFYTPEK 1230
PV+ + HA+++ P Y K
Sbjct: 263 PVVECMDHALTSLFPKTHYAAGK 285
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,468,690
Number of extensions: 1307043
Number of successful extensions: 4884
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 4795
Number of HSP's successfully gapped: 53
Length of query: 424
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 319
Effective length of database: 14,835,944
Effective search space: 4732666136
Effective search space used: 4732666136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013714
(1273 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 934 0.0
gb|GL893173.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 430 e-118
>Sscrofa_Chr06
|| Length = 157765593
Score = 934 bits (471), Expect = 0.0
Identities = 471/471 (100%)
Strand = Plus / Minus
Query: 1 gcagactggtttaaattacccaccaggaaatatgtggctgtaggagtatgcttaattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885485 gcagactggtttaaattacccaccaggaaatatgtggctgtaggagtatgcttaattcat 6885426
Query: 61 gctcattgaaagtgagccagggctgttttctccccctccctccttgcctcccggttcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885425 gctcattgaaagtgagccagggctgttttctccccctccctccttgcctcccggttcata 6885366
Query: 121 taacccccgctgcctccagcctgcctttgcccacttgacttgctggccctgagcacggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885365 taacccccgctgcctccagcctgcctttgcccacttgacttgctggccctgagcacggag 6885306
Query: 181 aggtgcagggagaatctgagaatgggcacgttcttctctgagacagggtggctctgcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885305 aggtgcagggagaatctgagaatgggcacgttcttctctgagacagggtggctctgcctg 6885246
Query: 241 actgtcacggcagtgctgggagcagtaattctttgcaaactcaagaagaaccacaggcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885245 actgtcacggcagtgctgggagcagtaattctttgcaaactcaagaagaaccacaggcag 6885186
Query: 301 gagggcagaaagatggtctgcctggctggcctctggggaggggcttgcctgctcagcctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885185 gagggcagaaagatggtctgcctggctggcctctggggaggggcttgcctgctcagcctc 6885126
Query: 361 tctctcttctggggcttgatcctcttctccctgtcatgttttctcatgtatgcttacttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885125 tctctcttctggggcttgatcctcttctccctgtcatgttttctcatgtatgcttacttt 6885066
Query: 421 tctggccaagagtttttacctgtggatcaaaaggcggtgctgatcacaggt 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885065 tctggccaagagtttttacctgtggatcaaaaggcggtgctgatcacaggt 6885015
>gb|GL893173.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1965
Length = 97620
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Minus
Query: 467 caggtggcgattctgggattggccatgctttgtccaagtatctggataagctgggattca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22411 caggtggcgattctgggattggccatgctttgtccaagtatctggataagctgggattca 22352
Query: 527 cagtatttgctggagttctggatgaaaagggatcaggagcagaggaactacgaagaacct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22351 cagtatttgctggagttctggatgaaaagggatcaggagcagaggaactacgaagaacct 22292
Query: 587 gctccaagcacctgtctgtgctccagctggacatcaccaactcgcagcagataagagatg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22291 gctccaagcacctgtctgtgctccagctggacatcaccaactcgcagcagataagagatg 22232
Query: 647 ctcacagcaaagtgatggaaaaggtgcagaacagagg 683
|||||||||||||||||||||||||||||||||||||
Sbjct: 22231 ctcacagcaaagtgatggaaaaggtgcagaacagagg 22195
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 681 aggactgtgggctgtggtcaacaacgcagggatccttggcttcccaatcgatggggagct 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15022 aggactgtgggctgtggtcaacaacgcagggatccttggcttcccaatcgatggggagct 14963
Query: 741 cattcccatgacccaatacaaacgatgcatggccgtgaacttcttcggggccgtggaagt 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14962 cattcccatgacccaatacaaacgatgcatggccgtgaacttcttcggggccgtggaagt 14903
Query: 801 caccaaggcatttttgcctcttcttaggaaatccaagggcaggctggtgaacatcagcag 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14902 caccaaggcatttttgcctcttcttaggaaatccaagggcaggctggtgaacatcagcag 14843
Query: 861 catggcagg 869
|||||||||
Sbjct: 14842 catggcagg 14834
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,027,815
Number of extensions: 343
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 3
Length of query: 1273
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1252
Effective length of database: 2,808,413,156
Effective search space: 3516133271312
Effective search space used: 3516133271312
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)