Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013723
(1033 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536648.1| PREDICTED: similar to peripheral myelin protein... 221 7e-58
Alignment gi|XP_547130.2| PREDICTED: similar to Epithelial membrane prote... 96 4e-20
Alignment gi|XP_541523.1| PREDICTED: similar to Epithelial membrane prote... 89 9e-18
Alignment gi|XP_852134.1| PREDICTED: similar to Epithelial membrane prote... 89 9e-18
Alignment gi|XP_543803.2| PREDICTED: similar to Epithelial membrane prote... 78 2e-14
Alignment gi|XP_865060.1| PREDICTED: similar to Epithelial membrane prote... 67 2e-11
>ref|XP_536648.1| PREDICTED: similar to peripheral myelin protein 22 [Canis
familiaris].
Length = 160
Score = 221 bits (564), Expect = 7e-58
Identities = 106/137 (77%), Positives = 114/137 (83%)
Frame = +3
Query: 231 STIVSQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXX 410
STIVSQW+VGNGHATDLWQNC+TS +GNV HC SSANEWLQSVQATM
Sbjct: 22 STIVSQWVVGNGHATDLWQNCSTSSAGNVHHCHSSSANEWLQSVQATMILSIIFSVLSLF 81
Query: 411 XXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSYGFAYILAWV 590
CQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRH +WH+ S+ +YGF YILAWV
Sbjct: 82 LFFCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHPEWHFNSDYAYGFTYILAWV 141
Query: 591 AFPLALLSGVVYVILRK 641
AFPLALLSGV+YVILRK
Sbjct: 142 AFPLALLSGVIYVILRK 158
>ref|XP_547130.2| PREDICTED: similar to Epithelial membrane protein-2 (EMP-2) (XMP
protein) [Canis familiaris].
Length = 167
Score = 96.3 bits (238), Expect = 4e-20
Identities = 58/149 (38%), Positives = 79/149 (53%), Gaps = 12/149 (8%)
Frame = +3
Query: 231 STIVSQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSAN----EWLQSVQATMXXXXXXXX 398
+TI + W VG D+W+ C N +C AN +Q+VQATM
Sbjct: 22 ATIDNAWWVGEEFFADVWRVCV-----NNTNCTEIGANFQDYSTMQAVQATMILSTILCC 76
Query: 399 XXXXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGS--------E 554
QLF L +G RF +T + Q+++ LCVM AASIYT R D H + E
Sbjct: 77 IAFLIFLLQLFRLKQGERFVLTSIIQLMSCLCVMIAASIYTDRREDLHKNNPGWYSLTLE 136
Query: 555 NSYGFAYILAWVAFPLALLSGVVYVILRK 641
SYG+++ILAWVAF +SG++Y+ILRK
Sbjct: 137 GSYGYSFILAWVAFAFTFISGLMYLILRK 165
>ref|XP_541523.1| PREDICTED: similar to Epithelial membrane protein-3 (EMP-3) (YMP
protein) (Hematopoietic neural membrane protein)
(HNMP-1) isoform 1 [Canis familiaris].
Length = 163
Score = 88.6 bits (218), Expect = 9e-18
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + +LW +CT + C S N WL++VQ M
Sbjct: 27 SWWTLPGKESLNLWYDCTWNNDNKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSE---NSYGFAYILAWVA 593
QL+T+ +GG FY TG+ Q+ + V + A IY + H + S+G+ + LAWVA
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAI-HAEEILAERPPGGSFGYCFALAWVA 145
Query: 594 FPLALLSGVVYVILRK 641
FPLAL SGV+Y+ LRK
Sbjct: 146 FPLALASGVIYIHLRK 161
>ref|XP_852134.1| PREDICTED: similar to Epithelial membrane protein-3 (EMP-3) (YMP
protein) (Hematopoietic neural membrane protein)
(HNMP-1) isoform 2 [Canis familiaris].
Length = 163
Score = 88.6 bits (218), Expect = 9e-18
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + +LW +CT + C S N WL++VQ M
Sbjct: 27 SWWTLPGKESLNLWYDCTWNNDNKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSE---NSYGFAYILAWVA 593
QL+T+ +GG FY TG+ Q+ + V + A IY + H + S+G+ + LAWVA
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAI-HAEEILAERPPGGSFGYCFALAWVA 145
Query: 594 FPLALLSGVVYVILRK 641
FPLAL SGV+Y+ LRK
Sbjct: 146 FPLALASGVIYIHLRK 161
>ref|XP_543803.2| PREDICTED: similar to Epithelial membrane protein-1 (EMP-1)
(Tumor-associated membrane protein) [Canis familiaris].
Length = 201
Score = 77.8 bits (190), Expect = 2e-14
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 6/143 (4%)
Frame = +3
Query: 231 STIVSQWMVGN--GHATDLWQNCTTSPSGNVQHCFMSSANE-WLQSVQATMXXXXXXXXX 401
STI + W+V + + LW+NCT+ +V +S A+E L++VQA M
Sbjct: 63 STIANVWVVSDFTKASVGLWKNCTSDGCDDV----LSYASEDALKAVQAFMILSIIFSVI 118
Query: 402 XXXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSE---NSYGFA 572
QLFT+ KG RF+++G ++ LC+M SIYT H G++ + +G++
Sbjct: 119 SLVVFVFQLFTMEKGNRFFLSGATMLVCWLCIMVGVSIYT-HHYANGQGTQYQSSHHGYS 177
Query: 573 YILAWVAFPLALLSGVVYVILRK 641
+IL W+ F + + GV+Y++LRK
Sbjct: 178 FILTWICFCFSFIIGVLYLVLRK 200
>ref|XP_865060.1| PREDICTED: similar to Epithelial membrane protein-3 (EMP-3) (YMP
protein) (Hematopoietic neural membrane protein)
(HNMP-1) isoform 3 [Canis familiaris].
Length = 94
Score = 67.4 bits (163), Expect = 2e-11
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Frame = +3
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSE---NSYGFAYILAWVA 593
QL+T+ +GG FY TG+ Q+ + V + A IY + H + S+G+ + LAWVA
Sbjct: 18 QLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAI-HAEEILAERPPGGSFGYCFALAWVA 76
Query: 594 FPLALLSGVVYVILRK 641
FPLAL SGV+Y+ LRK
Sbjct: 77 FPLALASGVIYIHLRK 92
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,971,884
Number of extensions: 1048607
Number of successful extensions: 5779
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5728
Number of HSP's successfully gapped: 6
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013723
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013723
(1033 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094626.1| peripheral myelin protein 22 [Bos taurus]. 228 9e-60
Alignment gi|NP_001068792.1| epithelial membrane protein 2 [Bos taurus]. 93 4e-19
Alignment gi|NP_001019733.1| epithelial membrane protein 3 [Bos taurus]. 89 6e-18
Alignment gi|XP_002687811.1| PREDICTED: epithelial membrane protein 1-lik... 83 5e-16
Alignment gi|XP_002687810.1| PREDICTED: epithelial membrane protein 1-lik... 83 5e-16
Alignment gi|XP_599688.3| PREDICTED: epithelial membrane protein 1-like [... 83 5e-16
Alignment gi|XP_001251760.1| PREDICTED: epithelial membrane protein 1-lik... 83 5e-16
Alignment gi|XP_001251794.1| PREDICTED: epithelial membrane protein 1-lik... 83 5e-16
>ref|NP_001094626.1| peripheral myelin protein 22 [Bos taurus].
Length = 160
Score = 228 bits (580), Expect = 9e-60
Identities = 110/137 (80%), Positives = 116/137 (84%)
Frame = +3
Query: 231 STIVSQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXX 410
STIVSQWMVGNGHATDLWQNC+TS G+VQHCF SSANEWLQSVQATM
Sbjct: 22 STIVSQWMVGNGHATDLWQNCSTSLMGSVQHCFSSSANEWLQSVQATMILSIIFSVLSLF 81
Query: 411 XXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSYGFAYILAWV 590
CQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRH +WH+ S+ SYGFAYILAWV
Sbjct: 82 LFFCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHPEWHFNSDGSYGFAYILAWV 141
Query: 591 AFPLALLSGVVYVILRK 641
AFPLALLSGV+YVILRK
Sbjct: 142 AFPLALLSGVIYVILRK 158
>ref|NP_001068792.1| epithelial membrane protein 2 [Bos taurus].
Length = 167
Score = 92.8 bits (229), Expect = 4e-19
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Frame = +3
Query: 231 STIVSQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXX 410
+TI + W VG D+W+ C + + + + + +Q+VQATM
Sbjct: 22 ATIDNAWWVGEEFFADIWKVCVNNTNCTELNDSVQDFST-VQAVQATMILSTILCCIAFL 80
Query: 411 XXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSE--------NSYG 566
QLF L +G RF +T + Q++A LCVM AASIYT R D H +E S+G
Sbjct: 81 IFLLQLFRLKQGERFVLTSIIQLMACLCVMIAASIYTDRRKDIHEKNEELYAQTSGGSFG 140
Query: 567 FAYILAWVAFPLALLSGVVYVILRK 641
+++ILAWVAF +SG++Y+ILRK
Sbjct: 141 YSFILAWVAFAFTFISGLMYLILRK 165
>ref|NP_001019733.1| epithelial membrane protein 3 [Bos taurus].
Length = 163
Score = 89.0 bits (219), Expect = 6e-18
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + +LW +CT + C S N WL++VQ M
Sbjct: 27 SWWTLPGKESLNLWYDCTWNSDNKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVR--HLDWHYGSENSYGFAYILAWVAF 596
QL+T+ +GG FY TG Q+ + V + A IY + + S S+G+ + LAWVAF
Sbjct: 87 QLYTMRRGGLFYATGFCQLCTSVAVFTGALIYAIHAEEILADRPSGGSFGYCFALAWVAF 146
Query: 597 PLALLSGVVYVILRK 641
PLAL SG++Y+ LRK
Sbjct: 147 PLALASGIIYIHLRK 161
>ref|XP_002687811.1| PREDICTED: epithelial membrane protein 1-like isoform 2 [Bos
taurus].
Length = 160
Score = 82.8 bits (203), Expect = 5e-16
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 9/146 (6%)
Frame = +3
Query: 231 STIVSQWMV---GNGHATDLWQNCTTSPSG-NVQHCFMSSANEWLQSVQATMXXXXXXXX 398
STI + W+V G G + LW+NCT+ G N+ + + + L++VQA M
Sbjct: 22 STIANVWVVSDLGTG-SVGLWKNCTSGGCGDNLSY----AGEDALKAVQAFMILSIIFSV 76
Query: 399 XXXXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSY----- 563
QLFT+ KG RF+++G ++ LCVM ASIYT + + GS N+Y
Sbjct: 77 ISLVVFVFQLFTMEKGNRFFLSGATMLVCWLCVMVGASIYTHHYAN---GSINNYEPSHH 133
Query: 564 GFAYILAWVAFPLALLSGVVYVILRK 641
G+++IL W+ F + + G++Y++LRK
Sbjct: 134 GYSFILTWICFCFSFIIGILYLVLRK 159
>ref|XP_002687810.1| PREDICTED: epithelial membrane protein 1-like isoform 1 [Bos
taurus].
Length = 160
Score = 82.8 bits (203), Expect = 5e-16
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 9/146 (6%)
Frame = +3
Query: 231 STIVSQWMV---GNGHATDLWQNCTTSPSG-NVQHCFMSSANEWLQSVQATMXXXXXXXX 398
STI + W+V G G + LW+NCT+ G N+ + + + L++VQA M
Sbjct: 22 STIANVWVVSDLGTG-SVGLWKNCTSGGCGDNLSY----AGEDALKAVQAFMILSIIFSV 76
Query: 399 XXXXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSY----- 563
QLFT+ KG RF+++G ++ LCVM ASIYT + + GS N+Y
Sbjct: 77 ISLVVFVFQLFTMEKGNRFFLSGATMLVCWLCVMVGASIYTHHYAN---GSINNYEPSHH 133
Query: 564 GFAYILAWVAFPLALLSGVVYVILRK 641
G+++IL W+ F + + G++Y++LRK
Sbjct: 134 GYSFILTWICFCFSFIIGILYLVLRK 159
>ref|XP_599688.3| PREDICTED: epithelial membrane protein 1-like [Bos taurus].
Length = 160
Score = 82.8 bits (203), Expect = 5e-16
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 9/146 (6%)
Frame = +3
Query: 231 STIVSQWMV---GNGHATDLWQNCTTSPSG-NVQHCFMSSANEWLQSVQATMXXXXXXXX 398
STI + W+V G G + LW+NCT+ G N+ + + + L++VQA M
Sbjct: 22 STIANVWVVSDLGTG-SVGLWKNCTSGGCGDNLSY----AGEDALKAVQAFMILSIIFSV 76
Query: 399 XXXXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSY----- 563
QLFT+ KG RF+++G ++ LCVM ASIYT + + GS N+Y
Sbjct: 77 ISLVVFVFQLFTMEKGNRFFLSGATMLVCWLCVMVGASIYTHHYAN---GSINNYEPSHH 133
Query: 564 GFAYILAWVAFPLALLSGVVYVILRK 641
G+++IL W+ F + + G++Y++LRK
Sbjct: 134 GYSFILTWICFCFSFIIGILYLVLRK 159
>ref|XP_001251760.1| PREDICTED: epithelial membrane protein 1-like isoform 1 [Bos
taurus].
Length = 160
Score = 82.8 bits (203), Expect = 5e-16
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 9/146 (6%)
Frame = +3
Query: 231 STIVSQWMV---GNGHATDLWQNCTTSPSG-NVQHCFMSSANEWLQSVQATMXXXXXXXX 398
STI + W+V G G + LW+NCT+ G N+ + + + L++VQA M
Sbjct: 22 STIANVWVVSDLGTG-SVGLWKNCTSGGCGDNLSY----AGEDALKAVQAFMILSIIFSV 76
Query: 399 XXXXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSY----- 563
QLFT+ KG RF+++G ++ LCVM ASIYT + + GS N+Y
Sbjct: 77 ISLVVFVFQLFTMEKGNRFFLSGATMLVCWLCVMVGASIYTHHYAN---GSINNYEPSHH 133
Query: 564 GFAYILAWVAFPLALLSGVVYVILRK 641
G+++IL W+ F + + G++Y++LRK
Sbjct: 134 GYSFILTWICFCFSFIIGILYLVLRK 159
>ref|XP_001251794.1| PREDICTED: epithelial membrane protein 1-like isoform 2 [Bos
taurus].
Length = 160
Score = 82.8 bits (203), Expect = 5e-16
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 9/146 (6%)
Frame = +3
Query: 231 STIVSQWMV---GNGHATDLWQNCTTSPSG-NVQHCFMSSANEWLQSVQATMXXXXXXXX 398
STI + W+V G G + LW+NCT+ G N+ + + + L++VQA M
Sbjct: 22 STIANVWVVSDLGTG-SVGLWKNCTSGGCGDNLSY----AGEDALKAVQAFMILSIIFSV 76
Query: 399 XXXXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSY----- 563
QLFT+ KG RF+++G ++ LCVM ASIYT + + GS N+Y
Sbjct: 77 ISLVVFVFQLFTMEKGNRFFLSGATMLVCWLCVMVGASIYTHHYAN---GSINNYEPSHH 133
Query: 564 GFAYILAWVAFPLALLSGVVYVILRK 641
G+++IL W+ F + + G++Y++LRK
Sbjct: 134 GYSFILTWICFCFSFIIGILYLVLRK 159
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,247,070
Number of extensions: 1009383
Number of successful extensions: 5442
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5388
Number of HSP's successfully gapped: 8
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013723
(1033 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356014.1| PREDICTED: epithelial membrane protein 3-lik... 90 2e-18
Alignment gi|XP_003356013.1| PREDICTED: epithelial membrane protein 3-lik... 90 2e-18
Alignment gi|XP_003356012.1| PREDICTED: epithelial membrane protein 3-lik... 90 2e-18
Alignment gi|XP_003356011.1| PREDICTED: epithelial membrane protein 3-lik... 90 2e-18
Alignment gi|XP_003356010.1| PREDICTED: epithelial membrane protein 3-lik... 90 2e-18
Alignment gi|XP_003356009.1| PREDICTED: epithelial membrane protein 3-lik... 90 2e-18
Alignment gi|NP_001093410.1| epithelial membrane protein 1 [Sus scrofa]. 82 5e-16
>ref|XP_003356014.1| PREDICTED: epithelial membrane protein 3-like isoform 6 [Sus
scrofa].
Length = 163
Score = 89.7 bits (221), Expect = 2e-18
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + +LW +CT + C S N WL++VQ M
Sbjct: 27 SWWTLPGKESLNLWYDCTWNSDNKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVR--HLDWHYGSENSYGFAYILAWVAF 596
QL+T+ +GG FY TG+ Q+ + V + A IY + + S S+G+ + LAWVAF
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEILADRPSGGSFGYCFALAWVAF 146
Query: 597 PLALLSGVVYVILRK 641
PLAL SG++Y+ LRK
Sbjct: 147 PLALASGIIYIHLRK 161
>ref|XP_003356013.1| PREDICTED: epithelial membrane protein 3-like isoform 5 [Sus
scrofa].
Length = 163
Score = 89.7 bits (221), Expect = 2e-18
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + +LW +CT + C S N WL++VQ M
Sbjct: 27 SWWTLPGKESLNLWYDCTWNSDNKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVR--HLDWHYGSENSYGFAYILAWVAF 596
QL+T+ +GG FY TG+ Q+ + V + A IY + + S S+G+ + LAWVAF
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEILADRPSGGSFGYCFALAWVAF 146
Query: 597 PLALLSGVVYVILRK 641
PLAL SG++Y+ LRK
Sbjct: 147 PLALASGIIYIHLRK 161
>ref|XP_003356012.1| PREDICTED: epithelial membrane protein 3-like isoform 4 [Sus
scrofa].
Length = 163
Score = 89.7 bits (221), Expect = 2e-18
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + +LW +CT + C S N WL++VQ M
Sbjct: 27 SWWTLPGKESLNLWYDCTWNSDNKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVR--HLDWHYGSENSYGFAYILAWVAF 596
QL+T+ +GG FY TG+ Q+ + V + A IY + + S S+G+ + LAWVAF
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEILADRPSGGSFGYCFALAWVAF 146
Query: 597 PLALLSGVVYVILRK 641
PLAL SG++Y+ LRK
Sbjct: 147 PLALASGIIYIHLRK 161
>ref|XP_003356011.1| PREDICTED: epithelial membrane protein 3-like isoform 3 [Sus
scrofa].
Length = 163
Score = 89.7 bits (221), Expect = 2e-18
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + +LW +CT + C S N WL++VQ M
Sbjct: 27 SWWTLPGKESLNLWYDCTWNSDNKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVR--HLDWHYGSENSYGFAYILAWVAF 596
QL+T+ +GG FY TG+ Q+ + V + A IY + + S S+G+ + LAWVAF
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEILADRPSGGSFGYCFALAWVAF 146
Query: 597 PLALLSGVVYVILRK 641
PLAL SG++Y+ LRK
Sbjct: 147 PLALASGIIYIHLRK 161
>ref|XP_003356010.1| PREDICTED: epithelial membrane protein 3-like isoform 2 [Sus
scrofa].
Length = 163
Score = 89.7 bits (221), Expect = 2e-18
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + +LW +CT + C S N WL++VQ M
Sbjct: 27 SWWTLPGKESLNLWYDCTWNSDNKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVR--HLDWHYGSENSYGFAYILAWVAF 596
QL+T+ +GG FY TG+ Q+ + V + A IY + + S S+G+ + LAWVAF
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEILADRPSGGSFGYCFALAWVAF 146
Query: 597 PLALLSGVVYVILRK 641
PLAL SG++Y+ LRK
Sbjct: 147 PLALASGIIYIHLRK 161
>ref|XP_003356009.1| PREDICTED: epithelial membrane protein 3-like isoform 1 [Sus
scrofa].
Length = 163
Score = 89.7 bits (221), Expect = 2e-18
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + +LW +CT + C S N WL++VQ M
Sbjct: 27 SWWTLPGKESLNLWYDCTWNSDNKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVR--HLDWHYGSENSYGFAYILAWVAF 596
QL+T+ +GG FY TG+ Q+ + V + A IY + + S S+G+ + LAWVAF
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEILADRPSGGSFGYCFALAWVAF 146
Query: 597 PLALLSGVVYVILRK 641
PLAL SG++Y+ LRK
Sbjct: 147 PLALASGIIYIHLRK 161
>ref|NP_001093410.1| epithelial membrane protein 1 [Sus scrofa].
Length = 160
Score = 82.0 bits (201), Expect = 5e-16
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Frame = +3
Query: 234 TIVSQWMVGNGH--ATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXX 407
TI + W+V + + LW+NCT S + + L+SVQA M
Sbjct: 23 TIANVWVVSDAGQGSVGLWKNCT---SAGCTDTLLYGGEDALKSVQAFMILSIIFSVVSL 79
Query: 408 XXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSY-----GFA 572
QLFT+ KG RF+++G ++ LC+M AS+YT + + S+N Y G++
Sbjct: 80 VVFVFQLFTMEKGNRFFLSGATMLVCWLCIMVGASVYTHHYAN---SSKNQYSASHHGYS 136
Query: 573 YILAWVAFPLALLSGVVYVILRK 641
+ILAW+ F + + GV+Y++LRK
Sbjct: 137 FILAWICFCFSFIIGVLYLVLRK 159
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,046,673
Number of extensions: 651728
Number of successful extensions: 3802
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3769
Number of HSP's successfully gapped: 7
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013723
(1033 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032911.1| peripheral myelin protein 22 [Mus musculus]. 214 7e-56
Alignment gi|NP_031955.2| epithelial membrane protein 2 [Mus musculus]. 99 7e-21
Alignment gi|NP_001139818.1| epithelial membrane protein 3 [Mus musculus]. 93 3e-19
Alignment gi|NP_034259.2| epithelial membrane protein 3 [Mus musculus]. 93 3e-19
Alignment gi|NP_034258.1| epithelial membrane protein 1 [Mus musculus]. 83 3e-16
>ref|NP_032911.1| peripheral myelin protein 22 [Mus musculus].
Length = 160
Score = 214 bits (546), Expect = 7e-56
Identities = 102/137 (74%), Positives = 111/137 (81%)
Frame = +3
Query: 231 STIVSQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXX 410
STIVSQW+VGNGH TDLWQNCTTS G VQHC+ SS +EWLQSVQATM
Sbjct: 22 STIVSQWLVGNGHTTDLWQNCTTSALGAVQHCYSSSVSEWLQSVQATMILSVIFSVLALF 81
Query: 411 XXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSYGFAYILAWV 590
CQLFTLTKGGRFYITG FQILAGLCVMSAA+IYTVRH +WH ++ SYGFAYILAWV
Sbjct: 82 LFFCQLFTLTKGGRFYITGFFQILAGLCVMSAAAIYTVRHSEWHVNTDYSYGFAYILAWV 141
Query: 591 AFPLALLSGVVYVILRK 641
AFPLALLSG++YVILRK
Sbjct: 142 AFPLALLSGIIYVILRK 158
>ref|NP_031955.2| epithelial membrane protein 2 [Mus musculus].
Length = 172
Score = 98.6 bits (244), Expect = 7e-21
Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 12/149 (8%)
Frame = +3
Query: 231 STIVSQWMVGNGHATDLWQNCTTSPS-GNVQHCFMSSANEW---LQSVQATMXXXXXXXX 398
STI + W VG+ + DLW+ CT S + + A E +Q+VQATM
Sbjct: 22 STIDNAWWVGDSFSADLWRVCTNSTNCTEINELTGPEAFEGYSVMQAVQATMILSTILSC 81
Query: 399 XXXXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGS--------E 554
QLF L +G RF +T + Q+++ LCVM ASIYT R D H + E
Sbjct: 82 ISFLIFLLQLFRLKQGERFVLTSIIQLMSCLCVMIGASIYTDRRQDLHQQNRKLYYLLQE 141
Query: 555 NSYGFAYILAWVAFPLALLSGVVYVILRK 641
SYG+++ILAWVAF +SG++Y+ILRK
Sbjct: 142 GSYGYSFILAWVAFAFTFISGLMYMILRK 170
>ref|NP_001139818.1| epithelial membrane protein 3 [Mus musculus].
Length = 163
Score = 93.2 bits (230), Expect = 3e-19
Identities = 50/135 (37%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + + +LW +CT + + C S N WL++VQA M
Sbjct: 27 SWWTLPDKESLNLWYDCTWNTTTQTWACSNVSENGWLKAVQALMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVR--HLDWHYGSENSYGFAYILAWVAF 596
QL+T+ +GG FY TG+ Q+ V S A IY + + + S S+G+ + LAWVAF
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSAAVFSGALIYAIHTEEILAKHPSGGSFGYCFALAWVAF 146
Query: 597 PLALLSGVVYVILRK 641
PLAL+SG VY+ LRK
Sbjct: 147 PLALVSGTVYIHLRK 161
>ref|NP_034259.2| epithelial membrane protein 3 [Mus musculus].
Length = 163
Score = 93.2 bits (230), Expect = 3e-19
Identities = 50/135 (37%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + + +LW +CT + + C S N WL++VQA M
Sbjct: 27 SWWTLPDKESLNLWYDCTWNTTTQTWACSNVSENGWLKAVQALMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVR--HLDWHYGSENSYGFAYILAWVAF 596
QL+T+ +GG FY TG+ Q+ V S A IY + + + S S+G+ + LAWVAF
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSAAVFSGALIYAIHTEEILAKHPSGGSFGYCFALAWVAF 146
Query: 597 PLALLSGVVYVILRK 641
PLAL+SG VY+ LRK
Sbjct: 147 PLALVSGTVYIHLRK 161
>ref|NP_034258.1| epithelial membrane protein 1 [Mus musculus].
Length = 160
Score = 83.2 bits (204), Expect = 3e-16
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Frame = +3
Query: 231 STIVSQWMVGN--GHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXX 404
STI + WMV + + LW+NCT GN + +++VQA M
Sbjct: 22 STIANVWMVADYANASVGLWKNCT---GGNCDGSLSYGNEDAIKAVQAFMILSIIFSIIS 78
Query: 405 XXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYT--VRHLDWHYGSENSYGFAYI 578
QLFT+ KG RF+++G ++ LC++ SIYT H + ++ S + G+ +I
Sbjct: 79 LVVFVFQLFTMEKGNRFFLSGSTMLVCWLCILVGVSIYTHHYAHSEGNFNSSSHQGYCFI 138
Query: 579 LAWVAFPLALLSGVVYVILRK 641
L W+ F + + G++Y++LRK
Sbjct: 139 LTWICFCFSFIIGILYMVLRK 159
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,050,903
Number of extensions: 838791
Number of successful extensions: 4289
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4256
Number of HSP's successfully gapped: 5
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013723
(1033 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000295.1| peripheral myelin protein 22 [Homo sapiens]. 223 2e-58
Alignment gi|NP_696997.1| peripheral myelin protein 22 [Homo sapiens]. 223 2e-58
Alignment gi|NP_696996.1| peripheral myelin protein 22 [Homo sapiens]. 223 2e-58
Alignment gi|NP_001415.1| epithelial membrane protein 2 [Homo sapiens]. 98 1e-20
Alignment gi|NP_001416.1| epithelial membrane protein 3 [Homo sapiens]. 89 7e-18
Alignment gi|NP_001414.1| epithelial membrane protein 1 [Homo sapiens]. 83 5e-16
>ref|NP_000295.1| peripheral myelin protein 22 [Homo sapiens].
Length = 160
Score = 223 bits (568), Expect = 2e-58
Identities = 107/137 (78%), Positives = 114/137 (83%)
Frame = +3
Query: 231 STIVSQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXX 410
STIVSQW+VGNGHATDLWQNC+TS SGNV HCF SS NEWLQSVQATM
Sbjct: 22 STIVSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPNEWLQSVQATMILSIIFSILSLF 81
Query: 411 XXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSYGFAYILAWV 590
CQLFTLTKGGRFYITG+FQILAGLCVMSAA+IYTVRH +WH S+ SYGFAYILAWV
Sbjct: 82 LFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTVRHPEWHLNSDYSYGFAYILAWV 141
Query: 591 AFPLALLSGVVYVILRK 641
AFPLALLSGV+YVILRK
Sbjct: 142 AFPLALLSGVIYVILRK 158
>ref|NP_696997.1| peripheral myelin protein 22 [Homo sapiens].
Length = 160
Score = 223 bits (568), Expect = 2e-58
Identities = 107/137 (78%), Positives = 114/137 (83%)
Frame = +3
Query: 231 STIVSQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXX 410
STIVSQW+VGNGHATDLWQNC+TS SGNV HCF SS NEWLQSVQATM
Sbjct: 22 STIVSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPNEWLQSVQATMILSIIFSILSLF 81
Query: 411 XXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSYGFAYILAWV 590
CQLFTLTKGGRFYITG+FQILAGLCVMSAA+IYTVRH +WH S+ SYGFAYILAWV
Sbjct: 82 LFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTVRHPEWHLNSDYSYGFAYILAWV 141
Query: 591 AFPLALLSGVVYVILRK 641
AFPLALLSGV+YVILRK
Sbjct: 142 AFPLALLSGVIYVILRK 158
>ref|NP_696996.1| peripheral myelin protein 22 [Homo sapiens].
Length = 160
Score = 223 bits (568), Expect = 2e-58
Identities = 107/137 (78%), Positives = 114/137 (83%)
Frame = +3
Query: 231 STIVSQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXX 410
STIVSQW+VGNGHATDLWQNC+TS SGNV HCF SS NEWLQSVQATM
Sbjct: 22 STIVSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPNEWLQSVQATMILSIIFSILSLF 81
Query: 411 XXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSYGFAYILAWV 590
CQLFTLTKGGRFYITG+FQILAGLCVMSAA+IYTVRH +WH S+ SYGFAYILAWV
Sbjct: 82 LFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTVRHPEWHLNSDYSYGFAYILAWV 141
Query: 591 AFPLALLSGVVYVILRK 641
AFPLALLSGV+YVILRK
Sbjct: 142 AFPLALLSGVIYVILRK 158
>ref|NP_001415.1| epithelial membrane protein 2 [Homo sapiens].
Length = 167
Score = 98.2 bits (243), Expect = 1e-20
Identities = 59/147 (40%), Positives = 83/147 (56%), Gaps = 10/147 (6%)
Frame = +3
Query: 231 STIVSQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEW--LQSVQATMXXXXXXXXXX 404
+T+ + W VG+ D+W+ CT + + V + S E+ LQ+VQATM
Sbjct: 22 ATVDNAWWVGDEFFADVWRICTNNTNCTVIN---DSFQEYSTLQAVQATMILSTILCCIA 78
Query: 405 XXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGS--------ENS 560
QLF L +G RF +T + Q+++ LCVM AASIYT R D H + E S
Sbjct: 79 FFIFVLQLFRLKQGERFVLTSIIQLMSCLCVMIAASIYTDRREDIHDKNAKFYPVTREGS 138
Query: 561 YGFAYILAWVAFPLALLSGVVYVILRK 641
YG++YILAWVAF +SG++Y+ILRK
Sbjct: 139 YGYSYILAWVAFACTFISGMMYLILRK 165
>ref|NP_001416.1| epithelial membrane protein 3 [Homo sapiens].
Length = 163
Score = 89.0 bits (219), Expect = 7e-18
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Frame = +3
Query: 243 SQWMVGNGHATDLWQNCTTSPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXXXXXXXXC 422
S W + + +LW +CT + C S N WL++VQ M
Sbjct: 27 SWWTLPGKESLNLWYDCTWNNDTKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMF 86
Query: 423 QLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRH---LDWHYGSENSYGFAYILAWVA 593
QL+T+ +GG FY TG+ Q+ + V + A IY + L+ H S+G+ + LAWVA
Sbjct: 87 QLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEILEKHPRG-GSFGYCFALAWVA 145
Query: 594 FPLALLSGVVYVILRK 641
FPLAL+SG++Y+ LRK
Sbjct: 146 FPLALVSGIIYIHLRK 161
>ref|NP_001414.1| epithelial membrane protein 1 [Homo sapiens].
Length = 157
Score = 82.8 bits (203), Expect = 5e-16
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Frame = +3
Query: 231 STIVSQWMVGN--GHATDLWQNCTT-SPSGNVQHCFMSSANEWLQSVQATMXXXXXXXXX 401
STI + W+V N + LW+NCT S S ++ + ++ + L++VQA M
Sbjct: 22 STIANVWLVSNTVDASVGLWKNCTNISCSDSLSY----ASEDALKTVQAFMILSIIFCVI 77
Query: 402 XXXXXXCQLFTLTKGGRFYITGVFQILAGLCVMSAASIYTVRHLDWHYGSENSYGFAYIL 581
QLFT+ KG RF+++G ++ LC++ SIYT H G++ +G++YIL
Sbjct: 78 ALLVFVFQLFTMEKGNRFFLSGATTLVCWLCILVGVSIYT-SHYANRDGTQYHHGYSYIL 136
Query: 582 AWVAFPLALLSGVVYVILRK 641
W+ F + + GV+Y++LRK
Sbjct: 137 GWICFCFSFIIGVLYLVLRK 156
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,991,646
Number of extensions: 1014889
Number of successful extensions: 5312
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5274
Number of HSP's successfully gapped: 6
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013723
(1033 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,395,046
Number of extensions: 134
Number of successful extensions: 134
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 0
Length of query: 1033
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1012
Effective length of database: 2,808,413,156
Effective search space: 2842114113872
Effective search space used: 2842114113872
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)