Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013730
(889 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537814.2| PREDICTED: similar to G protein-coupled recepto... 395 e-110
Alignment gi|XP_533931.2| PREDICTED: similar to G protein-coupled recepto... 70 2e-12
>ref|XP_537814.2| PREDICTED: similar to G protein-coupled receptor 107 [Canis
familiaris].
Length = 610
Score = 395 bits (1016), Expect = e-110
Identities = 201/259 (77%), Positives = 216/259 (83%)
Frame = +2
Query: 11 GDAGTNMAAPAPVGLSGSRSXXXXXXXXXXXXXXXXXXXXXXXXXRVHHLALKDDVRHKV 190
GDAGTNMA PAPVG SGSR RVHHLALKDDVRHKV
Sbjct: 50 GDAGTNMAVPAPVGPSGSRRPSLAAGLQLLPLLGLLQLLAQPGLGRVHHLALKDDVRHKV 109
Query: 191 HLNTFGFFKNGYMMVNVSSLSVNEPEGATDKDATIGFSLDRTKNDGFSSYLDEDVDYCIL 370
HLNTFGFFK+GYM+VNVSSLSVNEP GATDKD TIGFSLDRTKNDGFSSYLDEDV+YCIL
Sbjct: 110 HLNTFGFFKDGYMVVNVSSLSVNEPVGATDKDTTIGFSLDRTKNDGFSSYLDEDVNYCIL 169
Query: 371 KKQFTSVTLLILNISRSEVKVKSPPEAGTQLPKIIFNKDEKVLGQSPEPAVSPVSAGSQT 550
KKQ SVTLLIL+ISRSEV+V+SPPEAGTQLPKI+F+KDEKVLGQS EP +PVSAG+QT
Sbjct: 170 KKQSVSVTLLILDISRSEVRVRSPPEAGTQLPKIVFSKDEKVLGQSQEPGANPVSAGNQT 229
Query: 551 QKKQDSGKSKRSTVDSKATGEKSFSVRNNDGAVSFQFFFNISTDDQEGLYSLYFHKCPGS 730
Q K DSGKSKRSTVDSKATGEKSFSV N+DGAVSFQFFFNISTDDQEGLYSLYFHKC G+
Sbjct: 230 QLKPDSGKSKRSTVDSKATGEKSFSVHNSDGAVSFQFFFNISTDDQEGLYSLYFHKCSGN 289
Query: 731 KIRSNDKFSFSLDVSTTWK 787
K+ S+DKFSFSLD+ T K
Sbjct: 290 KVLSSDKFSFSLDIEITEK 308
>ref|XP_533931.2| PREDICTED: similar to G protein-coupled receptor 108 [Canis
familiaris].
Length = 593
Score = 70.5 bits (171), Expect = 2e-12
Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 4/211 (1%)
Frame = +2
Query: 146 RVHHLALKDDVRHKVHLNTFGFFKNGYMMVNVSSLSVNEPEGATDKDATIGFSLDRTKND 325
R+H LAL + R ++ LN+FGF+ NG + V++S L + E ++ +GFSL R ++
Sbjct: 91 RIHRLALTGEKRAEIPLNSFGFYANGSLEVDLSLLRLGLRE-TEEETPLVGFSLTRVQSG 149
Query: 326 GFSSYLDEDVDYCILKKQFTS-VTLLILNISRSEVKVKSPPEAGTQL--PKIIFNKDEKV 496
SY + C L+K ++ + L ++N V+V+ + P ++ +
Sbjct: 150 SIRSYSTPNPPNCPLRKNSSNLLVLFLINTKDLRVQVRRYGDQKKLFISPGLLPEVPSEP 209
Query: 497 LGQSPEPAVSP-VSAGSQTQKKQDSGKSKRSTVDSKATGEKSFSVRNNDGAVSFQFFFNI 673
PE V+P V +G+ + K S D E + + + + +F F I
Sbjct: 210 GPPKPELTVTPKVGSGTIAVLSKAQSKPTVSQGDHGKDSELVLGLGHLNNSYNFSFHVVI 269
Query: 674 STDDQEGLYSLYFHKCPGSKIRSNDKFSFSL 766
+ +EG YSL FH C S+ F ++
Sbjct: 270 GSRAEEGQYSLNFHNCYNSEPGQEQPFDLTV 300
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,568,180
Number of extensions: 710512
Number of successful extensions: 2019
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2009
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 194
Effective length of database: 15,474,232
Effective search space: 3002001008
Effective search space used: 3002001008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013730
(889 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092634.1| protein GPR107 [Bos taurus]. 387 e-108
Alignment gi|NP_001068801.1| protein GPR108 precursor [Bos taurus]. 77 2e-14
>ref|NP_001092634.1| protein GPR107 [Bos taurus].
Length = 566
Score = 387 bits (995), Expect = e-108
Identities = 199/253 (78%), Positives = 210/253 (83%)
Frame = +2
Query: 29 MAAPAPVGLSGSRSXXXXXXXXXXXXXXXXXXXXXXXXXRVHHLALKDDVRHKVHLNTFG 208
MAAPAPVGLSGSRS RVHHLALKDDVRHKVHLNTFG
Sbjct: 1 MAAPAPVGLSGSRSPRLASGLRLFPLLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG 60
Query: 209 FFKNGYMMVNVSSLSVNEPEGATDKDATIGFSLDRTKNDGFSSYLDEDVDYCILKKQFTS 388
FFKNGYM VNVSSLSVNEP+GATDKD TIGFSLDRTKNDGFSSYLDEDV+YCILKKQ S
Sbjct: 61 FFKNGYMKVNVSSLSVNEPKGATDKDFTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSAS 120
Query: 389 VTLLILNISRSEVKVKSPPEAGTQLPKIIFNKDEKVLGQSPEPAVSPVSAGSQTQKKQDS 568
VTLLIL+ISRSEVK++SPPEAG QLPKIIF KDEKV+GQS EP V+PVS+GSQ K+Q+S
Sbjct: 121 VTLLILDISRSEVKIRSPPEAGAQLPKIIFTKDEKVVGQSQEPGVNPVSSGSQAPKEQES 180
Query: 569 GKSKRSTVDSKATGEKSFSVRNNDGAVSFQFFFNISTDDQEGLYSLYFHKCPGSKIRSND 748
GKSKRSTVDSKATGEKSFSV NNDGAVSFQFFFNISTDDQEGLYSLYFHKC GS SND
Sbjct: 181 GKSKRSTVDSKATGEKSFSVHNNDGAVSFQFFFNISTDDQEGLYSLYFHKCLGSDAWSND 240
Query: 749 KFSFSLDVSTTWK 787
KFSFSLD+ T K
Sbjct: 241 KFSFSLDIEITEK 253
>ref|NP_001068801.1| protein GPR108 precursor [Bos taurus].
Length = 548
Score = 77.0 bits (188), Expect = 2e-14
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Frame = +2
Query: 146 RVHHLALKDDVRHKVHLNTFGFFKNGYMMVNVSSLSVNEPEGATDKDATIGFSLDRTKND 325
R+H L L + R + LN+FGF+ NG + VN+S L + + +K +GFSL R ++
Sbjct: 33 RIHRLTLTGEKRADIQLNSFGFYTNGSLEVNLSLLRLGR-QDTEEKAPLVGFSLTRVRSG 91
Query: 326 GFSSYLDEDVDYCILKKQFTS-VTLLILNISRSEVKVKSPPEAGTQLPKIIFNKDEKVLG 502
SY + D C L+K +S + L ++N EV+V+ + G Q I +L
Sbjct: 92 SIRSYSNRDSHECPLRKNSSSLLVLFLINTKDLEVQVR---KYGEQKKLFI---SAGLLP 145
Query: 503 QSP--------EPAVSPVSAGSQTQKKQDSGKSKRSTVDSKATG------EKSFSVRNND 640
+SP E V+P + T D KSK + + G E + + +
Sbjct: 146 ESPSKPGLPKSEHMVTPKVDHAGTTAAPDKAKSKPTGLQGDRQGVSGKDQELVLGLGHLN 205
Query: 641 GAVSFQFFFNISTDDQEGLYSLYFHKCPGS 730
+ +F F I + +EG Y+L FH C S
Sbjct: 206 NSYNFSFHVVIGSRAEEGQYNLNFHNCDNS 235
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,314,660
Number of extensions: 691489
Number of successful extensions: 2144
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2123
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 194
Effective length of database: 14,306,398
Effective search space: 2775441212
Effective search space used: 2775441212
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013730
(889 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122280.2| PREDICTED: hypothetical protein LOC100521766... 115 2e-41
>ref|XP_003122280.2| PREDICTED: hypothetical protein LOC100521766 isoform 2 [Sus
scrofa].
Length = 120
Score = 115 bits (287), Expect(2) = 2e-41
Identities = 57/59 (96%), Positives = 57/59 (96%)
Frame = +3
Query: 558 SKTVESPKGVQWIQRQQARNPFPFVIMMGQFHFSFSLTSALMTKKACTVFIFINALEAK 734
S TVESPKGVQWIQRQQARNPFPFVIMMGQFHFSFSLTSALMTKKA TVFIFINALEAK
Sbjct: 62 SPTVESPKGVQWIQRQQARNPFPFVIMMGQFHFSFSLTSALMTKKAYTVFIFINALEAK 120
Score = 72.4 bits (176), Expect(2) = 2e-41
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +2
Query: 425 VKVKSPPEAGTQLPKIIFNKDEKVLGQSPEPAVSP 529
VKVKSPPEAGTQLPKIIFNKDEKVLGQSPEPA+SP
Sbjct: 29 VKVKSPPEAGTQLPKIIFNKDEKVLGQSPEPALSP 63
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,454,837
Number of extensions: 441559
Number of successful extensions: 1279
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,904,026
Effective search space: 1762997148
Effective search space used: 1762997148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013730
(889 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848875.2| protein GPR107 precursor [Mus musculus]. 316 1e-86
Alignment gi|NP_084360.2| protein GPR108 precursor [Mus musculus]. 74 2e-13
>ref|NP_848875.2| protein GPR107 precursor [Mus musculus].
Length = 551
Score = 316 bits (810), Expect = 1e-86
Identities = 158/215 (73%), Positives = 184/215 (85%), Gaps = 1/215 (0%)
Frame = +2
Query: 146 RVHHLALKDDVRHKVHLNTFGFFKNGYMMVNVSSLSVNEPEGATDKDATIGFSLDRTKND 325
RVHHLALKDDVRHKVHLNTFGFFK+GYM+VNVSSLSVNEPEGATDKDA IGFSLDRTKND
Sbjct: 34 RVHHLALKDDVRHKVHLNTFGFFKDGYMVVNVSSLSVNEPEGATDKDAEIGFSLDRTKND 93
Query: 326 GFSSYLDEDVDYCILKKQ-FTSVTLLILNISRSEVKVKSPPEAGTQLPKIIFNKDEKVLG 502
GFSSYLDEDV+YCILKK+ +SVTL+IL+IS S VKV+SPPEAG QLP+I+F+KDEK+L
Sbjct: 94 GFSSYLDEDVNYCILKKKSMSSVTLVILDISGSIVKVRSPPEAGKQLPEIVFSKDEKILS 153
Query: 503 QSPEPAVSPVSAGSQTQKKQDSGKSKRSTVDSKATGEKSFSVRNNDGAVSFQFFFNISTD 682
QS EPAVS S+ ++ D K+ RSTVDSKA E+SFS+ NDG VSFQFFFNISTD
Sbjct: 154 QSQEPAVSSNPKDSEARRTLDGFKAGRSTVDSKAITERSFSIHKNDGVVSFQFFFNISTD 213
Query: 683 DQEGLYSLYFHKCPGSKIRSNDKFSFSLDVSTTWK 787
DQEGLYSLYFHKC G+ ++ ++ SFSL+++ T K
Sbjct: 214 DQEGLYSLYFHKCSGNNVKPGEQASFSLNIAITEK 248
>ref|NP_084360.2| protein GPR108 precursor [Mus musculus].
Length = 569
Score = 73.6 bits (179), Expect = 2e-13
Identities = 70/226 (30%), Positives = 104/226 (46%), Gaps = 31/226 (13%)
Frame = +2
Query: 146 RVHHLALKDDVRHKVHLNTFGFFKNGYMMVNVS--SLSVNEPEGATDKDATIGFSLDRTK 319
R+H L L + R + LN+FGF+ NG + V +S LS+ E E K +GFSL R +
Sbjct: 35 RIHRLTLTGEKRADIQLNSFGFYTNGSLEVELSLLRLSLQETEKKLPK---VGFSLSRVR 91
Query: 320 NDGFSSYLDEDVDYCILKKQFTS-VTLLILNISRSEVKVK---------SP---PEAGTQ 460
+ SY + C L + ++ + L ++NI +V+V+ SP PEA TQ
Sbjct: 92 SGSVRSYSRRNSHECPLDRNSSNFLVLFLINIKDLQVQVRKYGEQKLFISPGLLPEAPTQ 151
Query: 461 L--PK---IIFNKDEKVLGQSP-------EPAVSPVSAGSQTQKKQDSGKSKRSTVDSKA 604
PK KD V+ SP E +P +G +T + S+R
Sbjct: 152 SGPPKPDPAGTPKDNHVIHPSPTEMSAVKENQTAPQVSGDKTTPGEHRHSSERQPPTQDP 211
Query: 605 TGEKSFSVRN----NDGAVSFQFFFNISTDDQEGLYSLYFHKCPGS 730
+G++ V ND + +F F IS+ +EG YSL FH C S
Sbjct: 212 SGKEKDQVLGLGHLND-SYNFSFHIVISSRAEEGQYSLNFHNCHNS 256
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,535,716
Number of extensions: 601405
Number of successful extensions: 1686
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1682
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 195
Effective length of database: 12,583,923
Effective search space: 2453864985
Effective search space used: 2453864985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013730
(889 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001130030.1| protein GPR107 isoform 2 [Homo sapiens]. 356 2e-98
Alignment gi|NP_001130029.1| protein GPR107 isoform 1 [Homo sapiens]. 356 2e-98
Alignment gi|NP_066011.2| protein GPR107 isoform 3 [Homo sapiens]. 356 2e-98
Alignment gi|NP_001073921.1| protein GPR108 [Homo sapiens]. 77 2e-14
>ref|NP_001130030.1| protein GPR107 isoform 2 [Homo sapiens].
Length = 571
Score = 356 bits (913), Expect = 2e-98
Identities = 188/253 (74%), Positives = 202/253 (79%)
Frame = +2
Query: 29 MAAPAPVGLSGSRSXXXXXXXXXXXXXXXXXXXXXXXXXRVHHLALKDDVRHKVHLNTFG 208
MAA APVG SR RVHHLALKDDVRHKVHLNTFG
Sbjct: 1 MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG 60
Query: 209 FFKNGYMMVNVSSLSVNEPEGATDKDATIGFSLDRTKNDGFSSYLDEDVDYCILKKQFTS 388
FFK+GYM+VNVSSLS+NEPE DKD TIGFSLDRTKNDGFSSYLDEDV+YCILKKQ S
Sbjct: 61 FFKDGYMVVNVSSLSLNEPE---DKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSVS 117
Query: 389 VTLLILNISRSEVKVKSPPEAGTQLPKIIFNKDEKVLGQSPEPAVSPVSAGSQTQKKQDS 568
VTLLIL+ISRSEV+VKSPPEAGTQLPKIIF++DEKVLGQS EP V+P SAG+QTQK QD
Sbjct: 118 VTLLILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQSQEPNVNPASAGNQTQKTQDG 177
Query: 569 GKSKRSTVDSKATGEKSFSVRNNDGAVSFQFFFNISTDDQEGLYSLYFHKCPGSKIRSND 748
GKSKRSTVDSKA GEKSFSV NN GAVSFQFFFNISTDDQEGLYSLYFHKC G ++ S D
Sbjct: 178 GKSKRSTVDSKAMGEKSFSVHNNGGAVSFQFFFNISTDDQEGLYSLYFHKCLGKELPS-D 236
Query: 749 KFSFSLDVSTTWK 787
KF+FSLD+ T K
Sbjct: 237 KFTFSLDIEITEK 249
>ref|NP_001130029.1| protein GPR107 isoform 1 [Homo sapiens].
Length = 600
Score = 356 bits (913), Expect = 2e-98
Identities = 188/253 (74%), Positives = 202/253 (79%)
Frame = +2
Query: 29 MAAPAPVGLSGSRSXXXXXXXXXXXXXXXXXXXXXXXXXRVHHLALKDDVRHKVHLNTFG 208
MAA APVG SR RVHHLALKDDVRHKVHLNTFG
Sbjct: 1 MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG 60
Query: 209 FFKNGYMMVNVSSLSVNEPEGATDKDATIGFSLDRTKNDGFSSYLDEDVDYCILKKQFTS 388
FFK+GYM+VNVSSLS+NEPE DKD TIGFSLDRTKNDGFSSYLDEDV+YCILKKQ S
Sbjct: 61 FFKDGYMVVNVSSLSLNEPE---DKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSVS 117
Query: 389 VTLLILNISRSEVKVKSPPEAGTQLPKIIFNKDEKVLGQSPEPAVSPVSAGSQTQKKQDS 568
VTLLIL+ISRSEV+VKSPPEAGTQLPKIIF++DEKVLGQS EP V+P SAG+QTQK QD
Sbjct: 118 VTLLILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQSQEPNVNPASAGNQTQKTQDG 177
Query: 569 GKSKRSTVDSKATGEKSFSVRNNDGAVSFQFFFNISTDDQEGLYSLYFHKCPGSKIRSND 748
GKSKRSTVDSKA GEKSFSV NN GAVSFQFFFNISTDDQEGLYSLYFHKC G ++ S D
Sbjct: 178 GKSKRSTVDSKAMGEKSFSVHNNGGAVSFQFFFNISTDDQEGLYSLYFHKCLGKELPS-D 236
Query: 749 KFSFSLDVSTTWK 787
KF+FSLD+ T K
Sbjct: 237 KFTFSLDIEITEK 249
>ref|NP_066011.2| protein GPR107 isoform 3 [Homo sapiens].
Length = 552
Score = 356 bits (913), Expect = 2e-98
Identities = 188/253 (74%), Positives = 202/253 (79%)
Frame = +2
Query: 29 MAAPAPVGLSGSRSXXXXXXXXXXXXXXXXXXXXXXXXXRVHHLALKDDVRHKVHLNTFG 208
MAA APVG SR RVHHLALKDDVRHKVHLNTFG
Sbjct: 1 MAALAPVGSPASRGPRLAAGLRLLPMLGLLQLLAEPGLGRVHHLALKDDVRHKVHLNTFG 60
Query: 209 FFKNGYMMVNVSSLSVNEPEGATDKDATIGFSLDRTKNDGFSSYLDEDVDYCILKKQFTS 388
FFK+GYM+VNVSSLS+NEPE DKD TIGFSLDRTKNDGFSSYLDEDV+YCILKKQ S
Sbjct: 61 FFKDGYMVVNVSSLSLNEPE---DKDVTIGFSLDRTKNDGFSSYLDEDVNYCILKKQSVS 117
Query: 389 VTLLILNISRSEVKVKSPPEAGTQLPKIIFNKDEKVLGQSPEPAVSPVSAGSQTQKKQDS 568
VTLLIL+ISRSEV+VKSPPEAGTQLPKIIF++DEKVLGQS EP V+P SAG+QTQK QD
Sbjct: 118 VTLLILDISRSEVRVKSPPEAGTQLPKIIFSRDEKVLGQSQEPNVNPASAGNQTQKTQDG 177
Query: 569 GKSKRSTVDSKATGEKSFSVRNNDGAVSFQFFFNISTDDQEGLYSLYFHKCPGSKIRSND 748
GKSKRSTVDSKA GEKSFSV NN GAVSFQFFFNISTDDQEGLYSLYFHKC G ++ S D
Sbjct: 178 GKSKRSTVDSKAMGEKSFSVHNNGGAVSFQFFFNISTDDQEGLYSLYFHKCLGKELPS-D 236
Query: 749 KFSFSLDVSTTWK 787
KF+FSLD+ T K
Sbjct: 237 KFTFSLDIEITEK 249
>ref|NP_001073921.1| protein GPR108 [Homo sapiens].
Length = 543
Score = 77.0 bits (188), Expect = 2e-14
Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 10/205 (4%)
Frame = +2
Query: 146 RVHHLALKDDVRHKVHLNTFGFFKNGYMMVNVSSLSVNEPEGATDKDATIGFSLDRTKND 325
R+H LAL + R + LN+FGF+ NG + V +S L + E A +K +GFSL R ++
Sbjct: 33 RIHQLALTGEKRADIQLNSFGFYTNGSLEVELSVLRLGLRE-AEEKSLLVGFSLSRVRSG 91
Query: 326 GFSSYLDEDVDYCILKKQFTS-VTLLILNISRSEVKVKSPPEAGTQLPKIIFNKDEKVLG 502
SY D C L+K +S + L ++N +V+V+ + G Q IF +L
Sbjct: 92 RVRSYSTRDFQDCPLQKNSSSFLVLFLINTKDLQVQVR---KYGEQKTLFIF---PGLLP 145
Query: 503 QSPEPAVSPVSAGSQTQKKQDSGKSKRSTVDSKATGEKSFSVRNND---------GAVSF 655
++P P + +K G S S S + S ++ D + +F
Sbjct: 146 EAPSKPGLPKPQATVPRKVDGGGTSAASKPKSTPAVIQGPSGKDKDLVLGLSHLNNSYNF 205
Query: 656 QFFFNISTDDQEGLYSLYFHKCPGS 730
F I + +EG YSL FH C S
Sbjct: 206 SFHVVIGSQAEEGQYSLNFHNCNNS 230
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,084,040
Number of extensions: 707324
Number of successful extensions: 2111
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2101
Number of HSP's successfully gapped: 4
Length of query: 296
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 194
Effective length of database: 14,934,836
Effective search space: 2897358184
Effective search space used: 2897358184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013730
(889 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892334.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 377 e-102
gb|GL894891.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 125 4e-26
>gb|GL892334.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1209
Length = 24206
Score = 377 bits (190), Expect = e-102
Identities = 196/198 (98%)
Strand = Plus / Plus
Query: 653 tttcagtttttctttaacatcagcactgatgaccaagaaggcctgtacagtctttatttt 712
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 16853 tttcagtttttctttaacatcagcactgatgaccaagaaggcctatacagtctttatttt 16912
Query: 713 cataaatgccctggaagcaaaataaggtctaatgacaagttttcattcagccttgatgtg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16913 cataaatgccctggaagcaaaataaggtctaatgacaagttttcattcagccttgatgtg 16972
Query: 773 agtaccacatggaagctgtcccacatgcgttttgtcagccgtgtaagatgtgaggcattt 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16973 agtaccacatggaagctgtcccacatgcgttttgtcagccgtgtaagatgtgaggcattt 17032
Query: 833 ctttccttgtaagagtgg 850
||||| ||||||||||||
Sbjct: 17033 ctttctttgtaagagtgg 17050
Score = 234 bits (118), Expect = 7e-59
Identities = 124/126 (98%)
Strand = Plus / Plus
Query: 424 agtgaaagtaaaatctcccccagaagccggtacccagttaccaaagatcatcttcaacaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8187 agtgaaagtaaaatctcccccagaagccggtacccagttaccaaagatcatcttcaacaa 8246
Query: 484 ggacgagaaggtcctcggtcagagcccggagcctgccgttagccctgtttcagcaggcag 543
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 8247 ggacgagaaggtcctcggtcagagcccggagcctgcccttagccctgtttcaacaggcag 8306
Query: 544 ccagac 549
||||||
Sbjct: 8307 ccagac 8312
Score = 161 bits (81), Expect = 8e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 343 ggatgaagatgtggattattgtattttaaagaaacagttcacctctgtcacccttctaat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7029 ggatgaagatgtggattattgtattttaaagaaacagttcacctctgtcacccttctaat 7088
Query: 403 cctaaacatctccagaagtga 423
|||||||||||||||||||||
Sbjct: 7089 cctaaacatctccagaagtga 7109
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 600 aggcaacaggcgagaaatccttttccgttcgtaataatgatggggcagtttcatttcag 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12326 aggcaacaggcgagaaatccttttccgttcgtaataatgatggggcagtttcatttcag 12384
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 293 attggattcagcctagaccgtacaaagaatgatggattttcttcttacctgg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6750 attggattcagcctagaccgtacaaagaatgatggattttcttcttacctgg 6801
Score = 81.8 bits (41), Expect = 6e-13
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 562 agacagtggaaagtccaaaaggagtacagtggattcaaagg 602
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 10744 agacagtggaaagtccaaaaggagtacagtggattcaaagg 10784
>gb|GL894891.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3510
Length = 16311
Score = 125 bits (63), Expect = 4e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 70 tcctctgctggccgccggacttcggctgctcccgctgctggggctgctgcagctgctggc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16249 tcctctgctggccgccggacttcggctgctcccgctgctggggctgctgcagctgctggc 16308
Query: 130 cga 132
|||
Sbjct: 16309 cga 16311
Score = 65.9 bits (33), Expect = 4e-08
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 2 ggaagcga-tggtgatgctggaacaaacatggctgccccgg 41
|||||||| ||||||||||||||||||||||||||||||||
Sbjct: 16108 ggaagcgactggtgatgctggaacaaacatggctgccccgg 16148
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,976,407
Number of extensions: 416
Number of successful extensions: 416
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 8
Length of query: 889
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 868
Effective length of database: 2,808,413,156
Effective search space: 2437702619408
Effective search space used: 2437702619408
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)