Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013732
(919 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543231.1| PREDICTED: similar to Stathmin 4 (Stathmin-like... 375 e-104
Alignment gi|XP_849048.1| PREDICTED: similar to stathmin-like-protein RB3... 360 1e-99
Alignment gi|XP_857795.1| PREDICTED: similar to stathmin-like-protein RB3... 325 5e-89
Alignment gi|XP_860684.1| PREDICTED: similar to stathmin-like 2 isoform 3... 217 1e-56
Alignment gi|XP_535108.2| PREDICTED: similar to stathmin-like 2 isoform 1... 217 1e-56
Alignment gi|XP_534480.2| PREDICTED: similar to Stathmin 3 (SCG10-like pr... 203 2e-52
Alignment gi|XP_850147.1| PREDICTED: similar to stathmin-like 2 isoform 2... 195 4e-50
Alignment gi|XP_866126.1| PREDICTED: similar to Stathmin (Phosphoprotein ... 195 6e-50
Alignment gi|XP_535349.1| PREDICTED: similar to Stathmin (Phosphoprotein ... 195 6e-50
Alignment gi|XP_852653.1| PREDICTED: similar to Stathmin (Phosphoprotein ... 195 6e-50
>ref|XP_543231.1| PREDICTED: similar to Stathmin 4 (Stathmin-like protein B3) (RB3)
isoform 1 [Canis familiaris].
Length = 189
Score = 375 bits (962), Expect = e-104
Identities = 189/189 (100%), Positives = 189/189 (100%)
Frame = +2
Query: 149 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS 328
MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
Sbjct: 1 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS 60
Query: 329 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR 508
GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
Sbjct: 61 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR 120
Query: 509 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 688
EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN
Sbjct: 121 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 180
Query: 689 KELKEEASR 715
KELKEEASR
Sbjct: 181 KELKEEASR 189
>ref|XP_849048.1| PREDICTED: similar to stathmin-like-protein RB3 isoform 2 [Canis
familiaris].
Length = 216
Score = 360 bits (924), Expect = 1e-99
Identities = 189/216 (87%), Positives = 189/216 (87%), Gaps = 27/216 (12%)
Frame = +2
Query: 149 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE------------------------ 256
MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE
Sbjct: 1 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDQSQRKDSADWRER 60
Query: 257 ---ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE 427
ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
Sbjct: 61 REQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE 120
Query: 428 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK 607
IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
Sbjct: 121 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK 180
Query: 608 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR 715
ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
Sbjct: 181 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR 216
>ref|XP_857795.1| PREDICTED: similar to stathmin-like-protein RB3 isoform 3 [Canis
familiaris].
Length = 203
Score = 325 bits (832), Expect = 5e-89
Identities = 171/201 (85%), Positives = 172/201 (85%), Gaps = 27/201 (13%)
Frame = +2
Query: 149 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE------------------------ 256
MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE
Sbjct: 1 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDQSQRKDSADWRER 60
Query: 257 ---ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE 427
ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
Sbjct: 61 REQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE 120
Query: 428 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK 607
IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
Sbjct: 121 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK 180
Query: 608 ENREAHLAAMLERLQEKDKHA 670
ENREAHLAAMLERLQEK+ A
Sbjct: 181 ENREAHLAAMLERLQEKEPPA 201
>ref|XP_860684.1| PREDICTED: similar to stathmin-like 2 isoform 3 [Canis familiaris].
Length = 179
Score = 217 bits (552), Expect = 1e-56
Identities = 116/187 (62%), Positives = 141/187 (75%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
T AYKEKMKEL ++SL CSCF +P N + Y Y+ DMEV ++NK SG
Sbjct: 4 TAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKRASG 51
Query: 332 QSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKRE 511
Q+FE+ILKPPS + P+++D SLEEIQKKLEAAEERRK QEA++LK LAEKRE
Sbjct: 52 QAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKRE 111
Query: 512 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 691
HEREV+QKA+EENNNF KMA+EKL KME KENREA+LAA++ERLQEK++HA EVR+NK
Sbjct: 112 HEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNK 171
Query: 692 ELKEEAS 712
EL+ E S
Sbjct: 172 ELQVELS 178
>ref|XP_535108.2| PREDICTED: similar to stathmin-like 2 isoform 1 [Canis familiaris].
Length = 179
Score = 217 bits (552), Expect = 1e-56
Identities = 116/187 (62%), Positives = 141/187 (75%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
T AYKEKMKEL ++SL CSCF +P N + Y Y+ DMEV ++NK SG
Sbjct: 4 TAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKRASG 51
Query: 332 QSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKRE 511
Q+FE+ILKPPS + P+++D SLEEIQKKLEAAEERRK QEA++LK LAEKRE
Sbjct: 52 QAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKRE 111
Query: 512 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 691
HEREV+QKA+EENNNF KMA+EKL KME KENREA+LAA++ERLQEK++HA EVR+NK
Sbjct: 112 HEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNK 171
Query: 692 ELKEEAS 712
EL+ E S
Sbjct: 172 ELQVELS 178
>ref|XP_534480.2| PREDICTED: similar to Stathmin 3 (SCG10-like protein)
(SCG10-related protein HiAT3) (Hippocampus abundant
transcript 3) [Canis familiaris].
Length = 284
Score = 203 bits (516), Expect = 2e-52
Identities = 113/189 (59%), Positives = 141/189 (74%), Gaps = 2/189 (1%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
TL+AYKEKMKEL ++SL CSCF + P + Y+Y DMEV +L+K SG
Sbjct: 108 TLSAYKEKMKELSVLSLICSCFYSQPHPNTIYQY------------GDMEVKQLDKRASG 155
Query: 332 QSFEVILKPPSFDGVPEFN--ASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEK 505
QSFEVILK PS D PE +S P+R+D SLEE+QK+LEAAEERRK QEA++LK LAE+
Sbjct: 156 QSFEVILKSPS-DLSPESPVLSSPPKRKDTSLEELQKRLEAAEERRKTQEAQVLKQLAER 214
Query: 506 REHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRK 685
REHEREV+ KA+E+NNNF ++A+EKL KME +KE REAHLAA+ ERL+EK+ HA EVR+
Sbjct: 215 REHEREVLHKALEDNNNFSRLAEEKLNHKMELSKEIREAHLAALRERLREKELHAAEVRR 274
Query: 686 NKELKEEAS 712
NK +EE S
Sbjct: 275 NKGQREEMS 283
>ref|XP_850147.1| PREDICTED: similar to stathmin-like 2 isoform 2 [Canis familiaris].
Length = 209
Score = 195 bits (496), Expect = 4e-50
Identities = 105/170 (61%), Positives = 127/170 (74%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
T AYKEKMKEL ++SL CSCF +P N + Y Y+ DMEV ++NK SG
Sbjct: 4 TAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKRASG 51
Query: 332 QSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKRE 511
Q+FE+ILKPPS + P+++D SLEEIQKKLEAAEERRK QEA++LK LAEKRE
Sbjct: 52 QAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKRE 111
Query: 512 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKD 661
HEREV+QKA+EENNNF KMA+EKL KME KENREA+LAA++ERLQEK+
Sbjct: 112 HEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKE 161
>ref|XP_866126.1| PREDICTED: similar to Stathmin (Phosphoprotein p19) (pp19)
(Oncoprotein 18) (Op18) (Leukemia-associated
phosphoprotein p18) (pp17) (Prosolin) (Metablastin)
(Pr22 protein) isoform 3 [Canis familiaris].
Length = 149
Score = 195 bits (495), Expect = 6e-50
Identities = 101/140 (72%), Positives = 117/140 (83%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V EL K SGQ+FE+IL P S + VPEF S P+++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKS 63
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEKREHE+EV+QKAIEENNNF KMA+EKL KME+NKENREA +AA LERL
Sbjct: 64 HEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERL 123
Query: 650 QEKDKHAEEVRKNKELKEEA 709
+EKDKH EEVRKNKE K+ A
Sbjct: 124 REKDKHIEEVRKNKESKDPA 143
>ref|XP_535349.1| PREDICTED: similar to Stathmin (Phosphoprotein p19) (pp19)
(Oncoprotein 18) (Op18) (Leukemia-associated
phosphoprotein p18) (pp17) (Prosolin) (Metablastin)
(Pr22 protein) isoform 1 [Canis familiaris].
Length = 149
Score = 195 bits (495), Expect = 6e-50
Identities = 101/140 (72%), Positives = 117/140 (83%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V EL K SGQ+FE+IL P S + VPEF S P+++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKS 63
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEKREHE+EV+QKAIEENNNF KMA+EKL KME+NKENREA +AA LERL
Sbjct: 64 HEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERL 123
Query: 650 QEKDKHAEEVRKNKELKEEA 709
+EKDKH EEVRKNKE K+ A
Sbjct: 124 REKDKHIEEVRKNKESKDPA 143
>ref|XP_852653.1| PREDICTED: similar to Stathmin (Phosphoprotein p19) (pp19)
(Oncoprotein 18) (Op18) (Leukemia-associated
phosphoprotein p18) (pp17) (Prosolin) (Metablastin)
(Pr22 protein) isoform 2 [Canis familiaris].
Length = 149
Score = 195 bits (495), Expect = 6e-50
Identities = 101/140 (72%), Positives = 117/140 (83%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V EL K SGQ+FE+IL P S + VPEF S P+++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKS 63
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEKREHE+EV+QKAIEENNNF KMA+EKL KME+NKENREA +AA LERL
Sbjct: 64 HEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERL 123
Query: 650 QEKDKHAEEVRKNKELKEEA 709
+EKDKH EEVRKNKE K+ A
Sbjct: 124 REKDKHIEEVRKNKESKDPA 143
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,553,346
Number of extensions: 1003317
Number of successful extensions: 7260
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6979
Number of HSP's successfully gapped: 15
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013732
(919 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069048.1| stathmin-4 [Bos taurus]. 375 e-104
Alignment gi|NP_001029794.1| stathmin-2 [Bos taurus]. 217 1e-56
Alignment gi|NP_001077135.1| stathmin-3 [Bos taurus]. 206 2e-53
Alignment gi|NP_001029962.1| stathmin [Bos taurus]. 195 5e-50
Alignment gi|XP_002696364.1| PREDICTED: stathmin-like [Bos taurus]. 154 1e-37
Alignment gi|XP_589478.2| PREDICTED: stathmin-like [Bos taurus]. 154 1e-37
Alignment gi|XP_002707845.1| PREDICTED: InCenP homolog family member (icp... 49 5e-06
Alignment gi|XP_002691512.1| PREDICTED: intersectin-1-like [Bos taurus]. 49 5e-06
Alignment gi|XP_584352.4| PREDICTED: InCenP homolog family member (icp-1)... 49 5e-06
Alignment gi|XP_868972.3| PREDICTED: intersectin-1-like isoform 2, partia... 49 5e-06
>ref|NP_001069048.1| stathmin-4 [Bos taurus].
Length = 189
Score = 375 bits (962), Expect = e-104
Identities = 189/189 (100%), Positives = 189/189 (100%)
Frame = +2
Query: 149 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS 328
MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
Sbjct: 1 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS 60
Query: 329 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR 508
GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
Sbjct: 61 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR 120
Query: 509 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 688
EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN
Sbjct: 121 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 180
Query: 689 KELKEEASR 715
KELKEEASR
Sbjct: 181 KELKEEASR 189
>ref|NP_001029794.1| stathmin-2 [Bos taurus].
Length = 179
Score = 217 bits (552), Expect = 1e-56
Identities = 116/187 (62%), Positives = 141/187 (75%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
T AYKEKMKEL ++SL CSCF +P N + Y Y+ DMEV ++NK SG
Sbjct: 4 TAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKRASG 51
Query: 332 QSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKRE 511
Q+FE+ILKPPS + P+++D SLEEIQKKLEAAEERRK QEA++LK LAEKRE
Sbjct: 52 QAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKRE 111
Query: 512 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 691
HEREV+QKA+EENNNF KMA+EKL KME KENREA+LAA++ERLQEK++HA EVR+NK
Sbjct: 112 HEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNK 171
Query: 692 ELKEEAS 712
EL+ E S
Sbjct: 172 ELQVELS 178
>ref|NP_001077135.1| stathmin-3 [Bos taurus].
Length = 180
Score = 206 bits (524), Expect = 2e-53
Identities = 114/189 (60%), Positives = 142/189 (75%), Gaps = 2/189 (1%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
T++AYKEKMKEL ++SL CSCF + P + Y+Y DMEV +L+K SG
Sbjct: 4 TISAYKEKMKELSVLSLICSCFYSQPHPNTVYQY------------GDMEVKQLDKRASG 51
Query: 332 QSFEVILKPPSFDGVPE--FNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEK 505
QSFEVILK PS D PE +S P+R+D SLEE+QK+LEAAEERRK QEA++LK LAE+
Sbjct: 52 QSFEVILKSPS-DLSPESPMLSSPPKRKDTSLEELQKRLEAAEERRKTQEAQVLKQLAER 110
Query: 506 REHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRK 685
REHEREV+ KA+EENNNF ++A+EKL KME +KE REAHLAA+ ERL+EK+ HA EVR+
Sbjct: 111 REHEREVLHKALEENNNFSRLAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRR 170
Query: 686 NKELKEEAS 712
NKE +EE S
Sbjct: 171 NKEQREEMS 179
>ref|NP_001029962.1| stathmin [Bos taurus].
Length = 149
Score = 195 bits (495), Expect = 5e-50
Identities = 101/140 (72%), Positives = 117/140 (83%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V EL K SGQ+FE+IL P S + VPEF S P+++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKS 63
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEKREHE+EV+QKAIEENNNF KMA+EKL KME+NKENREA +AA LERL
Sbjct: 64 HEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERL 123
Query: 650 QEKDKHAEEVRKNKELKEEA 709
+EKDKH EEVRKNKE K+ A
Sbjct: 124 REKDKHIEEVRKNKESKDPA 143
>ref|XP_002696364.1| PREDICTED: stathmin-like [Bos taurus].
Length = 141
Score = 154 bits (388), Expect = 1e-37
Identities = 89/140 (63%), Positives = 105/140 (75%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V +L K +SGQ+FE+ L P S + VPEF S P ++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKKLEKPSSGQAFELTLSPQSKESVPEFPLS-PPKKDLSLEEIQKKLEAAEERRKS 62
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEK E E+EV+QKAIE+ NF KMA+EKL KME+NKENREA A L
Sbjct: 63 HEAEVLKQLAEKGEPEKEVLQKAIED--NFSKMAEEKLTHKMEANKENREAQTATKL--- 117
Query: 650 QEKDKHAEEVRKNKELKEEA 709
KDKH EEVRKNKE K+ A
Sbjct: 118 --KDKHVEEVRKNKESKDPA 135
>ref|XP_589478.2| PREDICTED: stathmin-like [Bos taurus].
Length = 141
Score = 154 bits (388), Expect = 1e-37
Identities = 89/140 (63%), Positives = 105/140 (75%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V +L K +SGQ+FE+ L P S + VPEF S P ++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKKLEKPSSGQAFELTLSPQSKESVPEFPLS-PPKKDLSLEEIQKKLEAAEERRKS 62
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEK E E+EV+QKAIE+ NF KMA+EKL KME+NKENREA A L
Sbjct: 63 HEAEVLKQLAEKGEPEKEVLQKAIED--NFSKMAEEKLTHKMEANKENREAQTATKL--- 117
Query: 650 QEKDKHAEEVRKNKELKEEA 709
KDKH EEVRKNKE K+ A
Sbjct: 118 --KDKHVEEVRKNKESKDPA 135
>ref|XP_002707845.1| PREDICTED: InCenP homolog family member (icp-1)-like [Bos taurus].
Length = 881
Score = 49.3 bits (116), Expect = 5e-06
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +2
Query: 395 LPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHERE------VIQKAIEENNN 556
L +RR+ E ++K AAE RR ++ E + LAE+RE ER+ ++ ++E
Sbjct: 649 LQKRREEEQERLRK---AAEARRLAEQREQERQLAEQREQERKREQERLQAERELQEREK 705
Query: 557 FIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE 676
+++ KE+L +++E K E A +E++K A+E
Sbjct: 706 ALRLQKERLQRELEEKKRKEEQQRLAEQRLQEEQEKKAKE 745
>ref|XP_002691512.1| PREDICTED: intersectin-1-like [Bos taurus].
Length = 1702
Score = 49.3 bits (116), Expect = 5e-06
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Frame = +2
Query: 350 LKPPSFDG---VPEFNASLPRRRDPSLEEIQKKLEAA-EERRKYQEAELLKHLAEKREHE 517
L PPSF G + N +LP + EE QKKL E++RK L ++R+
Sbjct: 327 LVPPSFRGGKQIDSINGTLPSYQKAQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQAM 386
Query: 518 REVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL 697
E Q+ E K E+ ++++ + ++ L LE+ +E ++ EE R+ +
Sbjct: 387 MEQQQREAERKAQKEKEEWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKEIE 446
Query: 698 KEEASR*SPEAQR 736
+ EA++ E QR
Sbjct: 447 RREAAKQELERQR 459
>ref|XP_584352.4| PREDICTED: InCenP homolog family member (icp-1)-like [Bos taurus].
Length = 881
Score = 49.3 bits (116), Expect = 5e-06
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +2
Query: 395 LPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHERE------VIQKAIEENNN 556
L +RR+ E ++K AAE RR ++ E + LAE+RE ER+ ++ ++E
Sbjct: 649 LQKRREEEQERLRK---AAEARRLAEQREQERQLAEQREQERKREQERLQAERELQEREK 705
Query: 557 FIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE 676
+++ KE+L +++E K E A +E++K A+E
Sbjct: 706 ALRLQKERLQRELEEKKRKEEQQRLAEQRLQEEQEKKAKE 745
>ref|XP_868972.3| PREDICTED: intersectin-1-like isoform 2, partial [Bos taurus].
Length = 1197
Score = 49.3 bits (116), Expect = 5e-06
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Frame = +2
Query: 350 LKPPSFDG---VPEFNASLPRRRDPSLEEIQKKLEAA-EERRKYQEAELLKHLAEKREHE 517
L PPSF G + N +LP + EE QKKL E++RK L ++R+
Sbjct: 327 LVPPSFRGGKQIDSINGTLPSYQKAQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQAM 386
Query: 518 REVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL 697
E Q+ E K E+ ++++ + ++ L LE+ +E ++ EE R+ +
Sbjct: 387 MEQQQREAERKAQKEKEEWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKEIE 446
Query: 698 KEEASR*SPEAQR 736
+ EA++ E QR
Sbjct: 447 RREAAKQELERQR 459
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,965,869
Number of extensions: 968450
Number of successful extensions: 6648
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6445
Number of HSP's successfully gapped: 10
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013732
(919 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928163.1| PREDICTED: stathmin-4-like isoform 1 [Sus sc... 375 e-104
Alignment gi|XP_001928170.1| PREDICTED: stathmin-4-like isoform 2 [Sus sc... 360 e-100
Alignment gi|XP_001928591.2| PREDICTED: hypothetical protein LOC100156768... 218 5e-57
Alignment gi|NP_001009582.1| stathmin [Sus scrofa]. 195 3e-50
>ref|XP_001928163.1| PREDICTED: stathmin-4-like isoform 1 [Sus scrofa].
Length = 189
Score = 375 bits (962), Expect = e-104
Identities = 189/189 (100%), Positives = 189/189 (100%)
Frame = +2
Query: 149 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS 328
MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
Sbjct: 1 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS 60
Query: 329 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR 508
GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
Sbjct: 61 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR 120
Query: 509 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 688
EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN
Sbjct: 121 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 180
Query: 689 KELKEEASR 715
KELKEEASR
Sbjct: 181 KELKEEASR 189
>ref|XP_001928170.1| PREDICTED: stathmin-4-like isoform 2 [Sus scrofa].
Length = 216
Score = 360 bits (924), Expect = e-100
Identities = 189/216 (87%), Positives = 189/216 (87%), Gaps = 27/216 (12%)
Frame = +2
Query: 149 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE------------------------ 256
MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE
Sbjct: 1 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRRDSADWRER 60
Query: 257 ---ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE 427
ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
Sbjct: 61 REQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE 120
Query: 428 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK 607
IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
Sbjct: 121 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK 180
Query: 608 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR 715
ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
Sbjct: 181 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR 216
>ref|XP_001928591.2| PREDICTED: hypothetical protein LOC100156768 [Sus scrofa].
Length = 401
Score = 218 bits (554), Expect = 5e-57
Identities = 116/186 (62%), Positives = 142/186 (76%)
Frame = +2
Query: 155 LAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQ 334
L+AYKEKMKEL ++SL CSCF +P N + Y Y+ DMEV ++NK SGQ
Sbjct: 227 LSAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKRASGQ 274
Query: 335 SFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREH 514
+FE+ILKPPS + P+++D SLEEIQKKLEAAEERRK QEA++LK LAEKREH
Sbjct: 275 AFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREH 334
Query: 515 EREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKE 694
EREV+QKA+EENNNF KMA+EKL KME KENREA+LAA++ERLQEK++HA EVR+NKE
Sbjct: 335 EREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKE 394
Query: 695 LKEEAS 712
L+ E S
Sbjct: 395 LQVELS 400
>ref|NP_001009582.1| stathmin [Sus scrofa].
Length = 149
Score = 195 bits (495), Expect = 3e-50
Identities = 101/140 (72%), Positives = 117/140 (83%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V EL K SGQ+FE+IL P S + VPEF S P+++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKS 63
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEKREHE+EV+QKAIEENNNF KMA+EKL KME+NKENREA +AA LERL
Sbjct: 64 HEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERL 123
Query: 650 QEKDKHAEEVRKNKELKEEA 709
+EKDKH EEVRKNKE K+ A
Sbjct: 124 REKDKHIEEVRKNKESKDPA 143
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,906,100
Number of extensions: 622934
Number of successful extensions: 4143
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4020
Number of HSP's successfully gapped: 4
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013732
(919 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062649.1| stathmin-4 [Mus musculus]. 374 e-104
Alignment gi|NP_079561.1| stathmin-2 [Mus musculus]. 217 1e-56
Alignment gi|NP_033159.1| stathmin-3 [Mus musculus]. 205 3e-53
Alignment gi|NP_062615.1| stathmin [Mus musculus]. 194 8e-50
Alignment gi|NP_001185897.1| intersectin-2 isoform 1 [Mus musculus]. 49 7e-06
Alignment gi|NP_035495.2| intersectin-2 isoform 2 [Mus musculus]. 49 7e-06
Alignment gi|NP_001185898.1| intersectin-2 isoform 3 [Mus musculus]. 49 7e-06
>ref|NP_062649.1| stathmin-4 [Mus musculus].
Length = 189
Score = 374 bits (959), Expect = e-104
Identities = 188/189 (99%), Positives = 189/189 (100%)
Frame = +2
Query: 149 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS 328
MTLAAYKEKMKELPLVSLFCSCFL+DPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
Sbjct: 1 MTLAAYKEKMKELPLVSLFCSCFLSDPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS 60
Query: 329 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR 508
GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
Sbjct: 61 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR 120
Query: 509 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 688
EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN
Sbjct: 121 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 180
Query: 689 KELKEEASR 715
KELKEEASR
Sbjct: 181 KELKEEASR 189
>ref|NP_079561.1| stathmin-2 [Mus musculus].
Length = 179
Score = 217 bits (552), Expect = 1e-56
Identities = 116/187 (62%), Positives = 141/187 (75%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
T AYKEKMKEL ++SL CSCF +P N + Y Y+ DMEV ++NK SG
Sbjct: 4 TAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKRASG 51
Query: 332 QSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKRE 511
Q+FE+ILKPPS + P+++D SLEEIQKKLEAAEERRK QEA++LK LAEKRE
Sbjct: 52 QAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKRE 111
Query: 512 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 691
HEREV+QKA+EENNNF KMA+EKL KME KENREA+LAA++ERLQEK++HA EVR+NK
Sbjct: 112 HEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNK 171
Query: 692 ELKEEAS 712
EL+ E S
Sbjct: 172 ELQVELS 178
>ref|NP_033159.1| stathmin-3 [Mus musculus].
Length = 180
Score = 205 bits (522), Expect = 3e-53
Identities = 114/189 (60%), Positives = 142/189 (75%), Gaps = 2/189 (1%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
T++AYKEKMKEL ++SL CSCF + P + Y+Y DMEV +L+K SG
Sbjct: 4 TVSAYKEKMKELSVLSLICSCFYSQPHPNTIYQY------------GDMEVKQLDKRASG 51
Query: 332 QSFEVILKPPSFDGVPEFN--ASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEK 505
QSFEVILK PS D PE +S P+R+D SLEE+QK+LEAAEERRK QEA++LK LAE+
Sbjct: 52 QSFEVILKSPS-DLSPESPVLSSPPKRKDASLEELQKRLEAAEERRKTQEAQVLKQLAER 110
Query: 506 REHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRK 685
REHEREV+ KA+EENNNF ++A+EKL KME +KE REAHLAA+ ERL+EK+ HA EVR+
Sbjct: 111 REHEREVLHKALEENNNFSRLAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRR 170
Query: 686 NKELKEEAS 712
NKE +EE S
Sbjct: 171 NKEQREEMS 179
>ref|NP_062615.1| stathmin [Mus musculus].
Length = 149
Score = 194 bits (493), Expect = 8e-50
Identities = 100/140 (71%), Positives = 117/140 (83%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V EL K SGQ+FE+IL P S + VP+F S P+++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKELEKRASGQAFELILSPRSKESVPDFPLSPPKKKDLSLEEIQKKLEAAEERRKS 63
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEKREHE+EV+QKAIEENNNF KMA+EKL KME+NKENREA +AA LERL
Sbjct: 64 HEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERL 123
Query: 650 QEKDKHAEEVRKNKELKEEA 709
+EKDKH EEVRKNKE K+ A
Sbjct: 124 REKDKHVEEVRKNKESKDPA 143
>ref|NP_001185897.1| intersectin-2 isoform 1 [Mus musculus].
Length = 1685
Score = 48.5 bits (114), Expect = 7e-06
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Frame = +2
Query: 350 LKPPSFDG---VPEFNASLPRRRDPSLEEIQKKLEAA-EERRKYQEAELLKHLAEKREHE 517
L PPSF G V N +LP + EE QKKL E++RK L ++R+
Sbjct: 327 LVPPSFRGGKQVDSVNGTLPSYQKTQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQVL 386
Query: 518 REVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL 697
E Q+ E K E+ ++++ + ++ L LE+ +E ++ EE R+ +
Sbjct: 387 MEQQQREAERKAQKEKEEWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKEIE 446
Query: 698 KEEASR*SPEAQR 736
+ EA++ E QR
Sbjct: 447 RREAAKQELERQR 459
>ref|NP_035495.2| intersectin-2 isoform 2 [Mus musculus].
Length = 1658
Score = 48.5 bits (114), Expect = 7e-06
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Frame = +2
Query: 350 LKPPSFDG---VPEFNASLPRRRDPSLEEIQKKLEAA-EERRKYQEAELLKHLAEKREHE 517
L PPSF G V N +LP + EE QKKL E++RK L ++R+
Sbjct: 327 LVPPSFRGGKQVDSVNGTLPSYQKTQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQVL 386
Query: 518 REVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL 697
E Q+ E K E+ ++++ + ++ L LE+ +E ++ EE R+ +
Sbjct: 387 MEQQQREAERKAQKEKEEWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKEIE 446
Query: 698 KEEASR*SPEAQR 736
+ EA++ E QR
Sbjct: 447 RREAAKQELERQR 459
>ref|NP_001185898.1| intersectin-2 isoform 3 [Mus musculus].
Length = 652
Score = 48.5 bits (114), Expect = 7e-06
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Frame = +2
Query: 350 LKPPSFDG---VPEFNASLPRRRDPSLEEIQKKLEAA-EERRKYQEAELLKHLAEKREHE 517
L PPSF G V N +LP + EE QKKL E++RK L ++R+
Sbjct: 327 LVPPSFRGGKQVDSVNGTLPSYQKTQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQVL 386
Query: 518 REVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL 697
E Q+ E K E+ ++++ + ++ L LE+ +E ++ EE R+ +
Sbjct: 387 MEQQQREAERKAQKEKEEWERKQRELQEQEWKKQLELEKRLEKQRELERQREEERRKEIE 446
Query: 698 KEEASR*SPEAQR 736
+ EA++ E QR
Sbjct: 447 RREAAKQELERQR 459
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,412,502
Number of extensions: 811236
Number of successful extensions: 5425
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5234
Number of HSP's successfully gapped: 7
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013732
(919 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_110422.2| stathmin-4 [Homo sapiens]. 360 e-99
Alignment gi|NP_008960.2| stathmin-2 isoform 2 [Homo sapiens]. 217 1e-56
Alignment gi|NP_056978.2| stathmin-3 [Homo sapiens]. 204 1e-52
Alignment gi|NP_981946.1| stathmin isoform a [Homo sapiens]. 195 6e-50
Alignment gi|NP_981944.1| stathmin isoform a [Homo sapiens]. 195 6e-50
Alignment gi|NP_005554.1| stathmin isoform a [Homo sapiens]. 195 6e-50
Alignment gi|NP_001186143.1| stathmin-2 isoform 1 [Homo sapiens]. 194 7e-50
Alignment gi|NP_001138926.1| stathmin isoform b [Homo sapiens]. 169 2e-42
>ref|NP_110422.2| stathmin-4 [Homo sapiens].
Length = 216
Score = 360 bits (924), Expect = e-99
Identities = 189/216 (87%), Positives = 189/216 (87%), Gaps = 27/216 (12%)
Frame = +2
Query: 149 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE------------------------ 256
MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE
Sbjct: 1 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRKDSADWRER 60
Query: 257 ---ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE 427
ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
Sbjct: 61 RAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE 120
Query: 428 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK 607
IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
Sbjct: 121 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK 180
Query: 608 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR 715
ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
Sbjct: 181 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR 216
>ref|NP_008960.2| stathmin-2 isoform 2 [Homo sapiens].
Length = 179
Score = 217 bits (552), Expect = 1e-56
Identities = 116/187 (62%), Positives = 141/187 (75%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
T AYKEKMKEL ++SL CSCF +P N + Y Y+ DMEV ++NK SG
Sbjct: 4 TAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKRASG 51
Query: 332 QSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKRE 511
Q+FE+ILKPPS + P+++D SLEEIQKKLEAAEERRK QEA++LK LAEKRE
Sbjct: 52 QAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKRE 111
Query: 512 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 691
HEREV+QKA+EENNNF KMA+EKL KME KENREA+LAA++ERLQEK++HA EVR+NK
Sbjct: 112 HEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNK 171
Query: 692 ELKEEAS 712
EL+ E S
Sbjct: 172 ELQVELS 178
>ref|NP_056978.2| stathmin-3 [Homo sapiens].
Length = 180
Score = 204 bits (518), Expect = 1e-52
Identities = 113/189 (59%), Positives = 140/189 (74%), Gaps = 2/189 (1%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
T++AYKEKMKEL ++SL CSCF P + Y+Y DMEV +L+K SG
Sbjct: 4 TISAYKEKMKELSVLSLICSCFYTQPHPNTVYQY------------GDMEVKQLDKRASG 51
Query: 332 QSFEVILKPPSFDGVPE--FNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEK 505
QSFEVILK PS D PE +S P+++D SLEE+QK+LEAAEERRK QEA++LK LAE+
Sbjct: 52 QSFEVILKSPS-DLSPESPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAER 110
Query: 506 REHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRK 685
REHEREV+ KA+EENNNF + A+EKL KME +KE REAHLAA+ ERL+EK+ HA EVR+
Sbjct: 111 REHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRR 170
Query: 686 NKELKEEAS 712
NKE +EE S
Sbjct: 171 NKEQREEMS 179
>ref|NP_981946.1| stathmin isoform a [Homo sapiens].
Length = 149
Score = 195 bits (495), Expect = 6e-50
Identities = 101/140 (72%), Positives = 117/140 (83%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V EL K SGQ+FE+IL P S + VPEF S P+++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKS 63
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEKREHE+EV+QKAIEENNNF KMA+EKL KME+NKENREA +AA LERL
Sbjct: 64 HEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERL 123
Query: 650 QEKDKHAEEVRKNKELKEEA 709
+EKDKH EEVRKNKE K+ A
Sbjct: 124 REKDKHIEEVRKNKESKDPA 143
>ref|NP_981944.1| stathmin isoform a [Homo sapiens].
Length = 149
Score = 195 bits (495), Expect = 6e-50
Identities = 101/140 (72%), Positives = 117/140 (83%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V EL K SGQ+FE+IL P S + VPEF S P+++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKS 63
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEKREHE+EV+QKAIEENNNF KMA+EKL KME+NKENREA +AA LERL
Sbjct: 64 HEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERL 123
Query: 650 QEKDKHAEEVRKNKELKEEA 709
+EKDKH EEVRKNKE K+ A
Sbjct: 124 REKDKHIEEVRKNKESKDPA 143
>ref|NP_005554.1| stathmin isoform a [Homo sapiens].
Length = 149
Score = 195 bits (495), Expect = 6e-50
Identities = 101/140 (72%), Positives = 117/140 (83%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V EL K SGQ+FE+IL P S + VPEF S P+++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKS 63
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEKREHE+EV+QKAIEENNNF KMA+EKL KME+NKENREA +AA LERL
Sbjct: 64 HEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERL 123
Query: 650 QEKDKHAEEVRKNKELKEEA 709
+EKDKH EEVRKNKE K+ A
Sbjct: 124 REKDKHIEEVRKNKESKDPA 143
>ref|NP_001186143.1| stathmin-2 isoform 1 [Homo sapiens].
Length = 187
Score = 194 bits (494), Expect = 7e-50
Identities = 105/169 (62%), Positives = 126/169 (74%)
Frame = +2
Query: 152 TLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSG 331
T AYKEKMKEL ++SL CSCF +P N + Y Y+ DMEV ++NK SG
Sbjct: 4 TAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKRASG 51
Query: 332 QSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKRE 511
Q+FE+ILKPPS + P+++D SLEEIQKKLEAAEERRK QEA++LK LAEKRE
Sbjct: 52 QAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKRE 111
Query: 512 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK 658
HEREV+QKA+EENNNF KMA+EKL KME KENREA+LAA++ERLQEK
Sbjct: 112 HEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEK 160
>ref|NP_001138926.1| stathmin isoform b [Homo sapiens].
Length = 174
Score = 169 bits (429), Expect = 2e-42
Identities = 88/123 (71%), Positives = 103/123 (83%)
Frame = +2
Query: 290 SDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKY 469
SD++V EL K SGQ+FE+IL P S + VPEF S P+++D SLEEIQKKLEAAEERRK
Sbjct: 4 SDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEERRKS 63
Query: 470 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 649
EAE+LK LAEKREHE+EV+QKAIEENNNF KMA+EKL KME+NKENREA +AA LERL
Sbjct: 64 HEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKLERL 123
Query: 650 QEK 658
+EK
Sbjct: 124 REK 126
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,840,385
Number of extensions: 980211
Number of successful extensions: 6709
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6454
Number of HSP's successfully gapped: 8
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013732
(919 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 428 e-117
Sscrofa_Chr06 58 9e-06
>Sscrofa_Chr14
|| Length = 153851969
Score = 428 bits (216), Expect = e-117
Identities = 248/263 (94%)
Strand = Plus / Plus
Query: 657 aggacaagcacgcagaggaggtgcggaaaaacaaggagctgaaggaagaggcctccaggt 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12123030 aggacaagcacgcagaggaggtgcggaaaaacaaggagctgaaggaagaggcctccaggt 12123089
Query: 717 aaagcccagaggcacagaggtttccagaatgccggaccgctccagcagctccgcagttcc 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12123090 aaagcccagaggcacagaggtttccagaatgccggaccgctccagcagctccgcagttcc 12123149
Query: 777 tgaggcagcctcgcccaccgctggctgctctcccagcactggggtttnnnnnnnnnnnnn 836
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12123150 tgaggcagcctcgcccaccgctggctgctctcccagcactggggtttggggggagggggg 12123209
Query: 837 tggccaggggcgtttcctctgcttttggtgtttgtacatgtaaagaattgaccagtgaaa 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12123210 tggccaggggcgtttcctctgcttttggtgtttgtacatgtaaagaattgaccagtgaag 12123269
Query: 897 gcatcctatttgtttcaggggaa 919
||||||||||||||||||||||
Sbjct: 12123270 ccatcctatttgtttcaggggaa 12123292
Score = 428 bits (216), Expect = e-117
Identities = 248/263 (94%)
Strand = Plus / Minus
Query: 657 aggacaagcacgcagaggaggtgcggaaaaacaaggagctgaaggaagaggcctccaggt 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166881 aggacaagcacgcagaggaggtgcggaaaaacaaggagctgaaggaagaggcctccaggt 12166822
Query: 717 aaagcccagaggcacagaggtttccagaatgccggaccgctccagcagctccgcagttcc 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166821 aaagcccagaggcacagaggtttccagaatgccggaccgctccagcagctccgcagttcc 12166762
Query: 777 tgaggcagcctcgcccaccgctggctgctctcccagcactggggtttnnnnnnnnnnnnn 836
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166761 tgaggcagcctcgcccaccgctggctgctctcccagcactggggtttggggggagggggg 12166702
Query: 837 tggccaggggcgtttcctctgcttttggtgtttgtacatgtaaagaattgaccagtgaaa 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166701 tggccaggggcgtttcctctgcttttggtgtttgtacatgtaaagaattgaccagtgaag 12166642
Query: 897 gcatcctatttgtttcaggggaa 919
||||||||||||||||||||||
Sbjct: 12166641 ccatcctatttgtttcaggggaa 12166619
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Plus
Query: 256 agcggacacggtggacctgaactggtgtgtaatttccgacatggaagtcattgagctgaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12118846 agcggacacggtggacctgaactggtgtgtaatttccgacatggaagtcattgagctgaa 12118905
Query: 316 taaatgcacctcaggccagtcttttgaagtcatcctgaagccgccctcctttgatggggt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12118906 taaatgcacctcaggccagtcttttgaagtcatcctgaagccgccctcctttgatggggt 12118965
Query: 376 gcccgagttcaatgcctccctacccagacggcgagacccatcactggaagaaatccagaa 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12118966 gcccgagttcaatgcctccctacccagacggcgagacccatcactggaagaaatccagaa 12119025
Query: 436 gaaactggaagcagctgaggagcgaaggaag 466
|||||||||||||||||||||||||||||||
Sbjct: 12119026 gaaactggaagcagctgaggagcgaaggaag 12119056
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Minus
Query: 256 agcggacacggtggacctgaactggtgtgtaatttccgacatggaagtcattgagctgaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12171065 agcggacacggtggacctgaactggtgtgtaatttccgacatggaagtcattgagctgaa 12171006
Query: 316 taaatgcacctcaggccagtcttttgaagtcatcctgaagccgccctcctttgatggggt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12171005 taaatgcacctcaggccagtcttttgaagtcatcctgaagccgccctcctttgatggggt 12170946
Query: 376 gcccgagttcaatgcctccctacccagacggcgagacccatcactggaagaaatccagaa 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12170945 gcccgagttcaatgcctccctacccagacggcgagacccatcactggaagaaatccagaa 12170886
Query: 436 gaaactggaagcagctgaggagcgaaggaag 466
|||||||||||||||||||||||||||||||
Sbjct: 12170885 gaaactggaagcagctgaggagcgaaggaag 12170855
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 465 agtaccaggaagctgagctcctgaagcacctggcagagaaacgagaacatgaaagggagg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12119880 agtaccaggaagctgagctcctgaagcacctggcagagaaacgagaacatgaaagggagg 12119939
Query: 525 tgatccaaaaagccattgaggagaacaacaacttcatcaagatggctaaggaaaaactgg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12119940 tgatccaaaaagccattgaggagaacaacaacttcatcaagatggctaaggaaaaactgg 12119999
Query: 585 cccagaagatggaatccaataaggagaaccgggaggcccacctcgctgccatgttggaac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12120000 cccagaagatggaatccaataaggagaaccgggaggcccacctcgctgccatgttggaac 12120059
Query: 645 ggctgcaagagaagg 659
|||||||||||||||
Sbjct: 12120060 ggctgcaagagaagg 12120074
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 465 agtaccaggaagctgagctcctgaagcacctggcagagaaacgagaacatgaaagggagg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12170031 agtaccaggaagctgagctcctgaagcacctggcagagaaacgagaacatgaaagggagg 12169972
Query: 525 tgatccaaaaagccattgaggagaacaacaacttcatcaagatggctaaggaaaaactgg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12169971 tgatccaaaaagccattgaggagaacaacaacttcatcaagatggctaaggaaaaactgg 12169912
Query: 585 cccagaagatggaatccaataaggagaaccgggaggcccacctcgctgccatgttggaac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12169911 cccagaagatggaatccaataaggagaaccgggaggcccacctcgctgccatgttggaac 12169852
Query: 645 ggctgcaagagaagg 659
|||||||||||||||
Sbjct: 12169851 ggctgcaagagaagg 12169837
Score = 192 bits (97), Expect = 2e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 161 gcctacaaagagaagatgaaggagctccccctggtgtccctgttctgctcctgcttcctg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12117590 gcctacaaagagaagatgaaggagctccccctggtgtccctgttctgctcctgcttcctg 12117649
Query: 221 gccgatcccctgaataagtcatcctataaatatgaag 257
|||||||||||||||||||||||||||||||||||||
Sbjct: 12117650 gccgatcccctgaataagtcatcctataaatatgaag 12117686
Score = 192 bits (97), Expect = 2e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 161 gcctacaaagagaagatgaaggagctccccctggtgtccctgttctgctcctgcttcctg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12172321 gcctacaaagagaagatgaaggagctccccctggtgtccctgttctgctcctgcttcctg 12172262
Query: 221 gccgatcccctgaataagtcatcctataaatatgaag 257
|||||||||||||||||||||||||||||||||||||
Sbjct: 12172261 gccgatcccctgaataagtcatcctataaatatgaag 12172225
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 70 cagatctgggacagtgtcctgagctggcagcagacctacccaactttcactagaactcag 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12116497 cagatctgggacagtgtcctgagctggcagcagacctacccaactttcactagaactcag 12116556
Query: 130 ctttcacattccagaaaacatgaccctcgctg 161
||||||||||||||||||||||||||||||||
Sbjct: 12116557 ctttcacattccagaaaacatgaccctcgctg 12116588
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 70 cagatctgggacagtgtcctgagctggcagcagacctacccaactttcactagaactcag 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12173414 cagatctgggacagtgtcctgagctggcagcagacctacccaactttcactagaactcag 12173355
Query: 130 ctttcacattccagaaaacatgaccctcgctg 161
||||||||||||||||||||||||||||||||
Sbjct: 12173354 ctttcacattccagaaaacatgaccctcgctg 12173323
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 14 agggtaccactaattgagggagtgaagaaggcagcagctcgcttctaactggactgcag 72
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12103369 agggtaccactaattgagggagtgaagaaggcagcagctcgcttctaactggactgcag 12103427
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 14 agggtaccactaattgagggagtgaagaaggcagcagctcgcttctaactggactgcag 72
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12186544 agggtaccactaattgagggagtgaagaaggcagcagctcgcttctaactggactgcag 12186486
>Sscrofa_Chr06
|| Length = 157765593
Score = 58.0 bits (29), Expect = 9e-06
Identities = 119/149 (79%)
Strand = Plus / Plus
Query: 473 gaagctgagctcctgaagcacctggcagagaaacgagaacatgaaagggaggtgatccaa 532
||||||||| || ||||||| || || |||||||| || || || | ||||||| | ||
Sbjct: 76932969 gaagctgaggtcttgaagcagcttgctgagaaacgggagcacgagaaggaggtgcttcag 76933028
Query: 533 aaagccattgaggagaacaacaacttcatcaagatggctaaggaaaaactggcccagaag 592
||||| || |||||||||||||| |||| || ||||| |||| || ||| |||| ||
Sbjct: 76933029 aaagcaatcgaggagaacaacaatttcagtaaaatggcggaggagaagctgacccacaaa 76933088
Query: 593 atggaatccaataaggagaaccgggaggc 621
|||||| |||| || |||||||| |||||
Sbjct: 76933089 atggaagccaacaaagagaaccgagaggc 76933117
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,677,029
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 15
Length of query: 919
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 898
Effective length of database: 2,808,413,156
Effective search space: 2521955014088
Effective search space used: 2521955014088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)