Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013734
(966 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535357.2| PREDICTED: similar to CCNDBP1 interactor isofor... 426 e-119
Alignment gi|XP_535356.2| PREDICTED: similar to CCNDBP1 interactor isofor... 375 e-104
>ref|XP_535357.2| PREDICTED: similar to CCNDBP1 interactor isoform 1 [Canis
familiaris].
Length = 315
Score = 426 bits (1096), Expect = e-119
Identities = 218/257 (84%), Positives = 223/257 (86%), Gaps = 1/257 (0%)
Frame = +3
Query: 3 VVAGSGKGKAVMAAATLVEKVP-GNXXXXXXXXXXXXXXXAQKREQRLRKFRELHLKRNE 179
VVAGSG+ K VMAAA L EKVP + AQKREQRLRKFRELHLKRNE
Sbjct: 59 VVAGSGERKFVMAAAILAEKVPVDSSEEGEQPPAAPAELAAQKREQRLRKFRELHLKRNE 118
Query: 180 ARKLNHQEVVEEDKRLKLPANWEAKKARXXXXXXXXXXXXXCAARGEDYEKVKLLEISAE 359
ARKLNHQEVVEEDKRLKLPANWEA+KAR CAARGEDYEKVKLLEISAE
Sbjct: 119 ARKLNHQEVVEEDKRLKLPANWEARKARLEWELQEEEKKKECAARGEDYEKVKLLEISAE 178
Query: 360 DAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNS 539
DAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNS
Sbjct: 179 DAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNS 238
Query: 540 LLHGTHVPSTEEIDRMVVDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFY 719
LLHGTHVPSTEE+DRMV+DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFY
Sbjct: 239 LLHGTHVPSTEEVDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFY 298
Query: 720 GKYTAEIKQNLERGTAV 770
GKYTAEIKQNLERGTAV
Sbjct: 299 GKYTAEIKQNLERGTAV 315
>ref|XP_535356.2| PREDICTED: similar to CCNDBP1 interactor isoform 1 [Canis
familiaris].
Length = 236
Score = 375 bits (964), Expect = e-104
Identities = 192/221 (86%), Positives = 195/221 (88%), Gaps = 5/221 (2%)
Frame = +3
Query: 123 QKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARXXXXXXXXXXXXX 302
Q+REQRL HLKRNEARKLNHQEVVEEDKRLKLPANWEAK AR
Sbjct: 22 QRREQRL------HLKRNEARKLNHQEVVEEDKRLKLPANWEAKIARLEWELQEEEKKKL 75
Query: 303 -----CAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQI 467
CAARGEDY KVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQI
Sbjct: 76 STIPECAARGEDYGKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQI 135
Query: 468 KPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVVDLEKQIEKRDKYSRRRPY 647
KPDMETYERLREKHGEEF+PTSNSLLHGTHVPSTEEIDRMV+DLEKQIEKRDKYSRRRPY
Sbjct: 136 KPDMETYERLREKHGEEFYPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPY 195
Query: 648 NDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 770
NDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV
Sbjct: 196 NDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 236
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,992,523
Number of extensions: 753832
Number of successful extensions: 3016
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2996
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013734
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013734
(966 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685815.1| PREDICTED: SYF2 homolog, RNA splicing factor... 407 e-114
Alignment gi|XP_600652.2| PREDICTED: SYF2 homolog, RNA splicing factor-li... 407 e-114
Alignment gi|XP_001256833.1| PREDICTED: SYF2 homolog, RNA splicing factor... 282 4e-76
>ref|XP_002685815.1| PREDICTED: SYF2 homolog, RNA splicing factor-like [Bos taurus].
Length = 242
Score = 407 bits (1047), Expect = e-114
Identities = 202/217 (93%), Positives = 204/217 (94%)
Frame = +3
Query: 120 AQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARXXXXXXXXXXXX 299
+QKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKAR
Sbjct: 26 SQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKK 85
Query: 300 XCAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM 479
CAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM
Sbjct: 86 ECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM 145
Query: 480 ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVVDLEKQIEKRDKYSRRRPYNDDA 659
ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMV+DLEKQIEKRDKYSRRRPYNDDA
Sbjct: 146 ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVLDLEKQIEKRDKYSRRRPYNDDA 205
Query: 660 DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 770
DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV
Sbjct: 206 DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
>ref|XP_600652.2| PREDICTED: SYF2 homolog, RNA splicing factor-like [Bos taurus].
Length = 276
Score = 407 bits (1047), Expect = e-114
Identities = 202/217 (93%), Positives = 204/217 (94%)
Frame = +3
Query: 120 AQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARXXXXXXXXXXXX 299
+QKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKAR
Sbjct: 60 SQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKK 119
Query: 300 XCAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM 479
CAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM
Sbjct: 120 ECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM 179
Query: 480 ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVVDLEKQIEKRDKYSRRRPYNDDA 659
ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMV+DLEKQIEKRDKYSRRRPYNDDA
Sbjct: 180 ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVLDLEKQIEKRDKYSRRRPYNDDA 239
Query: 660 DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 770
DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV
Sbjct: 240 DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 276
>ref|XP_001256833.1| PREDICTED: SYF2 homolog, RNA splicing factor-like, partial [Bos
taurus].
Length = 184
Score = 282 bits (721), Expect = 4e-76
Identities = 146/184 (79%), Positives = 150/184 (81%)
Frame = +3
Query: 36 MAAATLVEKVPGNXXXXXXXXXXXXXXXAQKREQRLRKFRELHLKRNEARKLNHQEVVEE 215
MAAATL EKV +QKREQRLRKFR+LH KRNEARKLNHQEVVEE
Sbjct: 1 MAAATLTEKVLVGGAEEQQPPAGAEELASQKREQRLRKFRKLHRKRNEARKLNHQEVVEE 60
Query: 216 DKRLKLPANWEAKKARXXXXXXXXXXXXXCAARGEDYEKVKLLEISAEDAERWERKKRRK 395
+KRLKLPAN EAKKAR CAARGEDYEKVKLLEISAEDAERWERKKRRK
Sbjct: 61 NKRLKLPANLEAKKARLEWELQEEEKKKECAARGEDYEKVKLLEISAEDAERWERKKRRK 120
Query: 396 NPDLGFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEE 575
NPDLGFSDYAAAQLRQYHRLTKQIKPDMETYE+LREKHGEEFFPTSNSLLHGTHVPSTEE
Sbjct: 121 NPDLGFSDYAAAQLRQYHRLTKQIKPDMETYEKLREKHGEEFFPTSNSLLHGTHVPSTEE 180
Query: 576 IDRM 587
IDRM
Sbjct: 181 IDRM 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,461,573
Number of extensions: 723445
Number of successful extensions: 2566
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2560
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013734
(966 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361550.1| PREDICTED: pre-mRNA-splicing factor SYF2-lik... 422 e-118
>ref|XP_003361550.1| PREDICTED: pre-mRNA-splicing factor SYF2-like, partial [Sus
scrofa].
Length = 241
Score = 422 bits (1084), Expect = e-118
Identities = 213/241 (88%), Positives = 213/241 (88%)
Frame = +3
Query: 48 TLVEKVPGNXXXXXXXXXXXXXXXAQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRL 227
TLVEKVPGN AQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRL
Sbjct: 1 TLVEKVPGNGAEEQQPPLGPEELAAQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRL 60
Query: 228 KLPANWEAKKARXXXXXXXXXXXXXCAARGEDYEKVKLLEISAEDAERWERKKRRKNPDL 407
KLPANWEAKKAR CAARGEDYEKVKLLEISAEDAERWERKKRRKNPDL
Sbjct: 61 KLPANWEAKKARLEWELQEEEKKKECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDL 120
Query: 408 GFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRM 587
GFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRM
Sbjct: 121 GFSDYAAAQLRQYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRM 180
Query: 588 VVDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTA 767
VVDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTA
Sbjct: 181 VVDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTA 240
Query: 768 V 770
V
Sbjct: 241 V 241
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,579,473
Number of extensions: 462469
Number of successful extensions: 1637
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1634
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013734
(966 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081056.1| pre-mRNA-splicing factor SYF2 [Mus musculus]. 399 e-111
>ref|NP_081056.1| pre-mRNA-splicing factor SYF2 [Mus musculus].
Length = 242
Score = 399 bits (1024), Expect = e-111
Identities = 196/217 (90%), Positives = 203/217 (93%)
Frame = +3
Query: 120 AQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARXXXXXXXXXXXX 299
AQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKAR
Sbjct: 26 AQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKK 85
Query: 300 XCAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM 479
CAARGEDYEKVKLLEISAEDAERWER+K++KNPDLGFSDYAAAQLRQYHRLTKQIKPDM
Sbjct: 86 ECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAAAQLRQYHRLTKQIKPDM 145
Query: 480 ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVVDLEKQIEKRDKYSRRRPYNDDA 659
E+YER REKHGE+FFPTSNSLLHGTHVPS+EEIDRMV+DLEKQIEKRDKYSRRRPYNDDA
Sbjct: 146 ESYERQREKHGEDFFPTSNSLLHGTHVPSSEEIDRMVLDLEKQIEKRDKYSRRRPYNDDA 205
Query: 660 DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 770
DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV
Sbjct: 206 DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,853,087
Number of extensions: 635866
Number of successful extensions: 2103
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2097
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013734
(966 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056299.1| pre-mRNA-splicing factor SYF2 isoform 1 [Homo s... 406 e-113
Alignment gi|NP_997053.1| pre-mRNA-splicing factor SYF2 isoform 2 [Homo s... 330 9e-91
>ref|NP_056299.1| pre-mRNA-splicing factor SYF2 isoform 1 [Homo sapiens].
Length = 243
Score = 406 bits (1043), Expect = e-113
Identities = 201/217 (92%), Positives = 203/217 (93%)
Frame = +3
Query: 120 AQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARXXXXXXXXXXXX 299
AQKREQRLRKFRELHL RNEARKLNHQEVVEEDKRLKLPANWEAKKAR
Sbjct: 27 AQKREQRLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELKEEEKKK 86
Query: 300 XCAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM 479
CAARGEDYEKVKLLEISAEDAERWERKK+RKNPDLGFSDYAAAQLRQYHRLTKQIKPDM
Sbjct: 87 ECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM 146
Query: 480 ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVVDLEKQIEKRDKYSRRRPYNDDA 659
ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMV+DLEKQIEKRDKYSRRRPYNDDA
Sbjct: 147 ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDA 206
Query: 660 DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 770
DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV
Sbjct: 207 DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243
>ref|NP_997053.1| pre-mRNA-splicing factor SYF2 isoform 2 [Homo sapiens].
Length = 201
Score = 330 bits (847), Expect = 9e-91
Identities = 171/217 (78%), Positives = 173/217 (79%)
Frame = +3
Query: 120 AQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARXXXXXXXXXXXX 299
AQKREQRLRKFRELHL R
Sbjct: 27 AQKREQRLRKFRELHLMRE----------------------------------------- 45
Query: 300 XCAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM 479
CAARGEDYEKVKLLEISAEDAERWERKK+RKNPDLGFSDYAAAQLRQYHRLTKQIKPDM
Sbjct: 46 -CAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTKQIKPDM 104
Query: 480 ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVVDLEKQIEKRDKYSRRRPYNDDA 659
ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMV+DLEKQIEKRDKYSRRRPYNDDA
Sbjct: 105 ETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDA 164
Query: 660 DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 770
DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV
Sbjct: 165 DIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 201
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,415,183
Number of extensions: 746316
Number of successful extensions: 2666
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2663
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013734
(966 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894621.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 704 0.0
>gb|GL894621.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3268
Length = 101843
Score = 704 bits (355), Expect = 0.0
Identities = 358/359 (99%)
Strand = Plus / Minus
Query: 608 aattgaaaaacgagacaaatatagccggagacgtccctataatgatgatgcagatattga 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14542 aattgaaaaacgagacaaatatagccggagacgtccctataatgatgatgcagatattga 14483
Query: 668 ctacattaatgaaaggaatgccaagttcaacaagaaggcagaaagattctatgggaaata 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14482 ctacattaatgaaaggaatgccaagttcaacaagaaggcagaaagattctatgggaaata 14423
Query: 728 tacagctgaaattaaacagaatttggaaagaggaacagctgtctaatccattacttcagg 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14422 tacagctgaaattaaacagaatttggaaagaggaacagctgtctaatccattacttcagg 14363
Query: 788 aactgtttcgagaagcttcaaaatggaggggaagtttctgttagcaaactgatgttgtct 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14362 aactgtttcgagaagcttcaaaatggaggggaagtttctgttagcaaactgatgttgtct 14303
Query: 848 tcagttataccagtgagccagagctccttctatgctttccacttagcatttaaaaataaa 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14302 tcagttataccagtgagccagagctccttctatgctttccacttagcatttaaaaataaa 14243
Query: 908 tgttttttcctaaacatacacttccacgtatgttttccacaattttgtgcttggatata 966
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14242 tgttttttcttaaacatacacttccacgtatgttttccacaattttgtgcttggatata 14184
Score = 254 bits (128), Expect = 8e-65
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 173 gaatgaagctcgtaaattaaatcaccaggaagttgttgaagaagataaaagacttaagtt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17253 gaatgaagctcgtaaattaaatcaccaggaagttgttgaagaagataaaagacttaagtt 17194
Query: 233 acctgcaaattgggaagccaaaaaagctcgtttggagtgggaactacaagaagaagaaaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17193 acctgcaaattgggaagccaaaaaagctcgtttggagtgggaactacaagaagaagaaaa 17134
Query: 293 gaaaaagg 300
||||||||
Sbjct: 17133 gaaaaagg 17126
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 298 aggaatgtgcagcaagaggggaagactatgagaaagtgaaattgttagagatcagtgcag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16729 aggaatgtgcagcaagaggggaagactatgagaaagtgaaattgttagagatcagtgcag 16670
Query: 358 aagatgcagaaagatgggagaggaagaagaggaggaaaaaccccgatctgggattttcag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16669 aagatgcagaaagatgggagaggaagaagaggaggaaaaaccccgatctgggattttcag 16610
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 61 aggtgccggggaacggcgcagaagagcagcagcccccactggggcccgaggagctagccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19978 aggtgccggggaacggcgcagaagagcagcagcccccactggggcccgaggagctagccg 19919
Query: 121 cccagaagcgcgaacagagactgcgcaaattccgggaactgcatctgaagcgg 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19918 cccagaagcgcgaacagagactgcgcaaattccgggaactgcatctgaagcgg 19866
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 509 tggagaagagttttttccaacatccaacagtcttcttcatggaacacacgtgccttccac 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15451 tggagaagagttttttccaacatccaacagtcttcttcatggaacacacgtgccttccac 15392
Query: 569 agaggaaattgatagaatggtggtagatctggaaaaaca 607
|||||||||||||||||||||||||||||||||||||||
Sbjct: 15391 agaggaaattgatagaatggtggtagatctggaaaaaca 15353
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Minus
Query: 410 attttcagattatgctgctgcccagcttcgtcagtatcatcggctgaccaaacagatcaa 469
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16266 atttttagattatgctgctgcccagcttcgtcagtatcatcggctgaccaaacagatcaa 16207
Query: 470 accagacatggaaacgtatgagagactgagagaaaagca 508
|||||||||||||||||||||||||||||||||||||||
Sbjct: 16206 accagacatggaaacgtatgagagactgagagaaaagca 16168
Score = 95.6 bits (48), Expect = 4e-17
Identities = 103/120 (85%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 173 gaatgaagctcgtaaattaaatcaccaggaagttgttgaagaagataaaagacttaagtt 232
||||||||||| |||| ||||||||||||| || | || ||||||||||||| ||| ||
Sbjct: 25401 gaatgaagctcaaaaatgaaatcaccaggaaattatggaggaagataaaagacctaaatt 25460
Query: 233 acctgcaaattgggaagccaaaaaagctcgtttggagtgggaactacaagaagaagaaaa 292
||||||||| | |||||| |||| |||| ||||||| |||||| | ||||||||||||||
Sbjct: 25461 acctgcaaact-ggaagctaaaagagcttgtttggaatgggaattgcaagaagaagaaaa 25519
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,684,977
Number of extensions: 1213
Number of successful extensions: 1213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1212
Number of HSP's successfully gapped: 7
Length of query: 966
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 945
Effective length of database: 2,808,413,156
Effective search space: 2653950432420
Effective search space used: 2653950432420
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)