Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013737
(1033 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534993.2| PREDICTED: similar to mitochondrial ribosomal p... 256 3e-68
>ref|XP_534993.2| PREDICTED: similar to mitochondrial ribosomal protein L43 isoform a
[Canis familiaris].
Length = 159
Score = 256 bits (653), Expect = 3e-68
Identities = 129/147 (87%), Positives = 132/147 (89%)
Frame = +1
Query: 52 MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG 231
MTARGT SRFL SVL+NGLGRYVQQLQRLSF+LSRDAPSSRGAREFVEREV DFARRNPG
Sbjct: 1 MTARGTPSRFLASVLYNGLGRYVQQLQRLSFNLSRDAPSSRGAREFVEREVADFARRNPG 60
Query: 232 VVIYVNXXXXXXXXXXAEYLNGAVREESIHCKSVEEIAALVQKLADQSGLDVIRIRKPFH 411
VVIYVN AEYLNGAVREESIHCKSVEEIA LVQKLA+QSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEIATLVQKLANQSGLDVIRIRKPFH 120
Query: 412 TDSPSIQGQWHPFTNKPTTLGGLRPRE 492
TDSPSIQGQWHPFTNKPT LGGLRPRE
Sbjct: 121 TDSPSIQGQWHPFTNKPTMLGGLRPRE 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,126,589
Number of extensions: 911795
Number of successful extensions: 3236
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3232
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013737
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013737
(1033 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776988.2| 39S ribosomal protein L43, mitochondrial precur... 264 1e-70
>ref|NP_776988.2| 39S ribosomal protein L43, mitochondrial precursor [Bos taurus].
Length = 159
Score = 264 bits (674), Expect = 1e-70
Identities = 133/147 (90%), Positives = 135/147 (91%)
Frame = +1
Query: 52 MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG 231
MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG
Sbjct: 1 MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG 60
Query: 232 VVIYVNXXXXXXXXXXAEYLNGAVREESIHCKSVEEIAALVQKLADQSGLDVIRIRKPFH 411
VVIYVN AEYLNGAVREES++CKSVEEIA LVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNPRPCCVPRVVAEYLNGAVREESLNCKSVEEIATLVQKLADQSGLDVIRIRKPFH 120
Query: 412 TDSPSIQGQWHPFTNKPTTLGGLRPRE 492
TDSPSIQGQWHPFTNKPT LGGLRPRE
Sbjct: 121 TDSPSIQGQWHPFTNKPTALGGLRPRE 147
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,648,512
Number of extensions: 899657
Number of successful extensions: 3180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3174
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013737
(1033 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925417.2| PREDICTED: twinkle protein, mitochondrial [S... 148 4e-36
>ref|XP_001925417.2| PREDICTED: twinkle protein, mitochondrial [Sus scrofa].
Length = 202
Score = 148 bits (374), Expect = 4e-36
Identities = 77/87 (88%), Positives = 77/87 (88%)
Frame = +1
Query: 52 MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG 231
MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG
Sbjct: 1 MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG 60
Query: 232 VVIYVNXXXXXXXXXXAEYLNGAVREE 312
VVIYVN AEYLNGAVREE
Sbjct: 61 VVIYVNPRPCCVPRVVAEYLNGAVREE 87
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,139,166
Number of extensions: 602211
Number of successful extensions: 2075
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2073
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013737
(1033 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444394.1| 39S ribosomal protein L43, mitochondrial [Mus m... 244 6e-65
>ref|NP_444394.1| 39S ribosomal protein L43, mitochondrial [Mus musculus].
Length = 159
Score = 244 bits (624), Expect = 6e-65
Identities = 123/147 (83%), Positives = 130/147 (88%)
Frame = +1
Query: 52 MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG 231
MT RGT+SRFLTSVLHNGLGRYVQQLQRLS SLSRDAPSSRGAREFVEREVTDFARRNPG
Sbjct: 1 MTGRGTSSRFLTSVLHNGLGRYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPG 60
Query: 232 VVIYVNXXXXXXXXXXAEYLNGAVREESIHCKSVEEIAALVQKLADQSGLDVIRIRKPFH 411
VV+YVN AEYLNGAVREE+++ KSVEEI +LVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVVYVNPRPCAMPRIVAEYLNGAVREENVNSKSVEEIKSLVQKLADQSGLDVIRIRKPFH 120
Query: 412 TDSPSIQGQWHPFTNKPTTLGGLRPRE 492
TD+PSIQGQWHPFTNK T L GLRPRE
Sbjct: 121 TDNPSIQGQWHPFTNKRTALHGLRPRE 147
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,799,961
Number of extensions: 748809
Number of successful extensions: 2518
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2509
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013737
(1033 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_789764.1| 39S ribosomal protein L43, mitochondrial isofor... 250 1e-66
Alignment gi|NP_789763.1| 39S ribosomal protein L43, mitochondrial isofor... 250 1e-66
Alignment gi|NP_789762.1| 39S ribosomal protein L43, mitochondrial isofor... 250 1e-66
Alignment gi|NP_115488.2| 39S ribosomal protein L43, mitochondrial isofor... 250 1e-66
>ref|NP_789764.1| 39S ribosomal protein L43, mitochondrial isoform d [Homo sapiens].
Length = 235
Score = 250 bits (639), Expect = 1e-66
Identities = 126/147 (85%), Positives = 129/147 (87%)
Frame = +1
Query: 52 MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG 231
MTARGT SRFL SVLHNGLGRYVQQLQRLSFS+SRD SSRGAREFVEREV DFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 232 VVIYVNXXXXXXXXXXAEYLNGAVREESIHCKSVEEIAALVQKLADQSGLDVIRIRKPFH 411
VVIYVN AEYLNGAVREESIHCKSVEEI+ LVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 412 TDSPSIQGQWHPFTNKPTTLGGLRPRE 492
TD+PSIQGQWHPFTNKPTT GLRPRE
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPRE 147
>ref|NP_789763.1| 39S ribosomal protein L43, mitochondrial isoform c [Homo sapiens].
Length = 202
Score = 250 bits (639), Expect = 1e-66
Identities = 126/147 (85%), Positives = 129/147 (87%)
Frame = +1
Query: 52 MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG 231
MTARGT SRFL SVLHNGLGRYVQQLQRLSFS+SRD SSRGAREFVEREV DFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 232 VVIYVNXXXXXXXXXXAEYLNGAVREESIHCKSVEEIAALVQKLADQSGLDVIRIRKPFH 411
VVIYVN AEYLNGAVREESIHCKSVEEI+ LVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 412 TDSPSIQGQWHPFTNKPTTLGGLRPRE 492
TD+PSIQGQWHPFTNKPTT GLRPRE
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPRE 147
>ref|NP_789762.1| 39S ribosomal protein L43, mitochondrial isoform b [Homo sapiens].
Length = 215
Score = 250 bits (639), Expect = 1e-66
Identities = 126/147 (85%), Positives = 129/147 (87%)
Frame = +1
Query: 52 MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG 231
MTARGT SRFL SVLHNGLGRYVQQLQRLSFS+SRD SSRGAREFVEREV DFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 232 VVIYVNXXXXXXXXXXAEYLNGAVREESIHCKSVEEIAALVQKLADQSGLDVIRIRKPFH 411
VVIYVN AEYLNGAVREESIHCKSVEEI+ LVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 412 TDSPSIQGQWHPFTNKPTTLGGLRPRE 492
TD+PSIQGQWHPFTNKPTT GLRPRE
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPRE 147
>ref|NP_115488.2| 39S ribosomal protein L43, mitochondrial isoform a [Homo sapiens].
Length = 159
Score = 250 bits (639), Expect = 1e-66
Identities = 126/147 (85%), Positives = 129/147 (87%)
Frame = +1
Query: 52 MTARGTASRFLTSVLHNGLGRYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPG 231
MTARGT SRFL SVLHNGLGRYVQQLQRLSFS+SRD SSRGAREFVEREV DFARRNPG
Sbjct: 1 MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPG 60
Query: 232 VVIYVNXXXXXXXXXXAEYLNGAVREESIHCKSVEEIAALVQKLADQSGLDVIRIRKPFH 411
VVIYVN AEYLNGAVREESIHCKSVEEI+ LVQKLADQSGLDVIRIRKPFH
Sbjct: 61 VVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFH 120
Query: 412 TDSPSIQGQWHPFTNKPTTLGGLRPRE 492
TD+PSIQGQWHPFTNKPTT GLRPRE
Sbjct: 121 TDNPSIQGQWHPFTNKPTTFRGLRPRE 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,356,259
Number of extensions: 891312
Number of successful extensions: 2933
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2925
Number of HSP's successfully gapped: 4
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013737
(1033 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1263 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1263 bits (637), Expect = 0.0
Identities = 690/706 (97%), Gaps = 3/706 (0%)
Strand = Plus / Minus
Query: 290 ttaacggggctgtgcgcgaggagagcatccattgcaagtcggtcgaggagatcgccgcac 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121829109 ttaacggggctgtgcgcgaggagagcatccattgcaagtcggtcgaggagatcgccgcac 121829050
Query: 350 tggtgcagaaactggcggaccagtcgggattggacgtgatccgcatccgcaagcccttcc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121829049 tggtgcagaaactggcggaccagtcgggattggacgtgatccgcatccgcaagcccttcc 121828990
Query: 410 acacggacagccctagcatccagggccagtggcaccccttcaccaacaaaccgacaacgt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121828989 acacggacagccctagcatccagggccagtggcaccccttcaccaacaaaccgacaacgt 121828930
Query: 470 tgggcggcctgcgccctcgagaggttcaggatcctgctccagcccaggtgcaagcacaat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121828929 tgggcggcctgcgccctcgagaggttcaggatcctgctccagcccaggtgcaagcacaat 121828870
Query: 530 gaagagttgccccattaactccagttccagtcttgattctcatctcagtagaggtggttc 589
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 121828869 gaagagttgccccattaactccaattccagtcttgattctcatctcagtagaggtggttc 121828810
Query: 590 ttcctcctcgtttggttcacaggagacacatggagcccaccaaaagggaagctgagccaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121828809 ttcctcctcgtttggttcacaggagacacatggagcccaccaaaagggaagctgagccaa 121828750
Query: 650 aacttctgcttgggatacagaagagttgcctgtttcnnnnnnnggtgttcactgtgcggg 709
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 121828749 aacttctgcttgggatacagaagagttgcctg-ttctttttttggtgttcactgtgcggg 121828691
Query: 710 gcagtggctgtgagccttctagtttttatctggttgacatctctaaaatctgagagtgtt 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121828690 gcagtggctgtgagccttctagtttttatctggttgacatctctaaaatctgagagtgtt 121828631
Query: 770 aaaggattttactgggtccttatttctcaaatccataatagtgatctgaaatcacattga 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121828630 aaaggattttactgggtccttatttctcaaatccataatagtgatctgaaatcacattga 121828571
Query: 830 gaggtttcaaggctggcatctgaagaatctcttatgtcctgtttctgcattcgttgacct 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121828570 gaggtttcaaggctggcatctgaagaatctcttatgtcctgtttctgcattcgttgacct 121828511
Query: 890 agagagaagtagcaccttatattctgctgtgtatacactggggcaaggccttttatatgt 949
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 121828510 agagagaagtagcaccttatattctgctgtgtatacact-gggcaaggccttttatatgt 121828452
Query: 950 gtatgaatgtttttgtggaccgattaaaaaactgaatttaataaac 995
||||||||| ||||||| | ||||| ||||||||| |||||||||
Sbjct: 121828451 gtatgaatg-ttttgtgtagagattagaaaactgaagttaataaac 121828407
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 1 gtcccgcccccactccgcgatagcccggccggctgcccgggagctacggccatgacggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121754871 gtcccgcccccactccgcgatagcccggccggctgcccgggagctacggccatgacggcg 121754812
Query: 61 cgagggaccgcgagccgcttcttgaccagtgtcctgcacaacgggctgggtcgttacgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121754811 cgagggaccgcgagccgcttcttgaccagtgtcctgcacaacgggctgggtcgttacgtg 121754752
Query: 121 cagcagctgcagcgtctcagctttagccttagccgtgacgcgccctcttcccgcggtgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121754751 cagcagctgcagcgtctcagctttagccttagccgtgacgcgccctcttcccgcggtgcc 121754692
Query: 181 agg 183
|||
Sbjct: 121754691 agg 121754689
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 1 gtcccgcccccactccgcgatagcccggccggctgcccgggagctacggccatgacggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121829599 gtcccgcccccactccgcgatagcccggccggctgcccgggagctacggccatgacggcg 121829540
Query: 61 cgagggaccgcgagccgcttcttgaccagtgtcctgcacaacgggctgggtcgttacgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121829539 cgagggaccgcgagccgcttcttgaccagtgtcctgcacaacgggctgggtcgttacgtg 121829480
Query: 121 cagcagctgcagcgtctcagctttagccttagccgtgacgcgccctcttcccgcggtgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121829479 cagcagctgcagcgtctcagctttagccttagccgtgacgcgccctcttcccgcggtgcc 121829420
Query: 181 agg 183
|||
Sbjct: 121829419 agg 121829417
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 179 ccagggagtttgtggaacgggaggtgaccgacttcgcccgccggaacccgggggtcgtaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121754604 ccagggagtttgtggaacgggaggtgaccgacttcgcccgccggaacccgggggtcgtaa 121754545
Query: 239 tatacgtgaatccgcggccgtgctgtgtgcccagagtagtggccgagtacc 289
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121754544 tatacgtgaatccgcggccgtgctgtgtgcccagagtagtggccgagtacc 121754494
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 179 ccagggagtttgtggaacgggaggtgaccgacttcgcccgccggaacccgggggtcgtaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121829332 ccagggagtttgtggaacgggaggtgaccgacttcgcccgccggaacccgggggtcgtaa 121829273
Query: 239 tatacgtgaatccgcggccgtgctgtgtgcccagagtagtggccgagtacc 289
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121829272 tatacgtgaatccgcggccgtgctgtgtgcccagagtagtggccgagtacc 121829222
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,009,637
Number of extensions: 130
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 6
Length of query: 1033
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1012
Effective length of database: 2,808,413,156
Effective search space: 2842114113872
Effective search space used: 2842114113872
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)