Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013743
(1119 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532990.2| PREDICTED: similar to 39S ribosomal protein L19... 494 e-140
>ref|XP_532990.2| PREDICTED: similar to 39S ribosomal protein L19, mitochondrial
precursor (L19mt) (MRP-L19) (MRP-L15) [Canis
familiaris].
Length = 292
Score = 494 bits (1271), Expect = e-140
Identities = 245/292 (83%), Positives = 258/292 (88%)
Frame = +3
Query: 30 MAASITRGSWAAVGLGQSFPPTRALLPAPASVICRTLAGSGRQQVTGSSEPGAFQPPPKP 209
MAASI AA GL + F ALLPAPAS+ R G GR Q TG SEPGAF+PPPKP
Sbjct: 1 MAASIAGACGAAAGLCRGFRAAGALLPAPASIAWRARVGPGRPQSTGPSEPGAFKPPPKP 60
Query: 210 VIVDKRRPQRPETRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 389
VIVD+RR R E RFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT
Sbjct: 61 VIVDRRRAPREERRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 120
Query: 390 TADPYASAKTSQFLGICIQRSGSGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLE 569
TAD YA+ K SQFLGICIQRSG+GLGATFILRNTIEGQGVEICFELYNPRIQEIQV+KLE
Sbjct: 121 TADLYANGKASQFLGICIQRSGAGLGATFILRNTIEGQGVEICFELYNPRIQEIQVIKLE 180
Query: 570 KRLDNSLLYLRDALPEYSTFDVNMKPITQEFNQEVPVNQLKVKMKPKPWSKRWERPKFNI 749
KRLD+SLLYLRDALPEYSTFD+NMKP+ E + EVPVNQLKVKMKPKPWSKRWERPKFNI
Sbjct: 181 KRLDDSLLYLRDALPEYSTFDMNMKPVAHEPSHEVPVNQLKVKMKPKPWSKRWERPKFNI 240
Query: 750 KGIRFDLCLTEEQMREAQKWSQPWLEFDMMREYDTSKIEAAIWDEIEASKNS 905
KGIRFDLCLTEE+M+EAQKWSQPWLEFDMMR YDTSKIEAAIWDEIEASK S
Sbjct: 241 KGIRFDLCLTEEKMKEAQKWSQPWLEFDMMRTYDTSKIEAAIWDEIEASKKS 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,737,721
Number of extensions: 1108780
Number of successful extensions: 4260
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4246
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 269
Effective length of database: 15,407,560
Effective search space: 4144633640
Effective search space used: 4144633640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013743
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013743
(1119 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039533.1| 39S ribosomal protein L19, mitochondrial pre... 518 e-147
>ref|NP_001039533.1| 39S ribosomal protein L19, mitochondrial precursor [Bos taurus].
Length = 292
Score = 518 bits (1335), Expect = e-147
Identities = 254/292 (86%), Positives = 268/292 (91%)
Frame = +3
Query: 30 MAASITRGSWAAVGLGQSFPPTRALLPAPASVICRTLAGSGRQQVTGSSEPGAFQPPPKP 209
MAASI RG AA GLG SF RALLP SV R LAG GR+Q+TG SEPG FQPPPKP
Sbjct: 1 MAASIARGCQAAKGLGPSFRSARALLPVSTSVASRVLAGPGRRQITGPSEPGVFQPPPKP 60
Query: 210 VIVDKRRPQRPETRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 389
VIVDKR PQR E+RFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT
Sbjct: 61 VIVDKRGPQRRESRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 120
Query: 390 TADPYASAKTSQFLGICIQRSGSGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLE 569
TADPYA+ KTSQFLGICIQRSG GLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLE
Sbjct: 121 TADPYANGKTSQFLGICIQRSGKGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLE 180
Query: 570 KRLDNSLLYLRDALPEYSTFDVNMKPITQEFNQEVPVNQLKVKMKPKPWSKRWERPKFNI 749
KRLD+SLLYLRDALPEYSTFD+NMKP+ QE ++EVP+NQLKVKMKPKPWSKRWERPKFN+
Sbjct: 181 KRLDDSLLYLRDALPEYSTFDMNMKPVAQEPSREVPINQLKVKMKPKPWSKRWERPKFNV 240
Query: 750 KGIRFDLCLTEEQMREAQKWSQPWLEFDMMREYDTSKIEAAIWDEIEASKNS 905
KGIRFDLCLTEEQM+EAQKWSQPWLEFDMMREYDTSKIE AIW+EIEASK+S
Sbjct: 241 KGIRFDLCLTEEQMKEAQKWSQPWLEFDMMREYDTSKIETAIWNEIEASKSS 292
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,906,769
Number of extensions: 1064273
Number of successful extensions: 3885
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3875
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,240,222
Effective search space: 3830619718
Effective search space used: 3830619718
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013743
(1119 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354803.1| PREDICTED: 39S ribosomal protein L19, mitoch... 593 e-170
>ref|XP_003354803.1| PREDICTED: 39S ribosomal protein L19, mitochondrial-like [Sus
scrofa].
Length = 292
Score = 593 bits (1530), Expect = e-170
Identities = 292/292 (100%), Positives = 292/292 (100%)
Frame = +3
Query: 30 MAASITRGSWAAVGLGQSFPPTRALLPAPASVICRTLAGSGRQQVTGSSEPGAFQPPPKP 209
MAASITRGSWAAVGLGQSFPPTRALLPAPASVICRTLAGSGRQQVTGSSEPGAFQPPPKP
Sbjct: 1 MAASITRGSWAAVGLGQSFPPTRALLPAPASVICRTLAGSGRQQVTGSSEPGAFQPPPKP 60
Query: 210 VIVDKRRPQRPETRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 389
VIVDKRRPQRPETRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT
Sbjct: 61 VIVDKRRPQRPETRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 120
Query: 390 TADPYASAKTSQFLGICIQRSGSGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLE 569
TADPYASAKTSQFLGICIQRSGSGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLE
Sbjct: 121 TADPYASAKTSQFLGICIQRSGSGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLE 180
Query: 570 KRLDNSLLYLRDALPEYSTFDVNMKPITQEFNQEVPVNQLKVKMKPKPWSKRWERPKFNI 749
KRLDNSLLYLRDALPEYSTFDVNMKPITQEFNQEVPVNQLKVKMKPKPWSKRWERPKFNI
Sbjct: 181 KRLDNSLLYLRDALPEYSTFDVNMKPITQEFNQEVPVNQLKVKMKPKPWSKRWERPKFNI 240
Query: 750 KGIRFDLCLTEEQMREAQKWSQPWLEFDMMREYDTSKIEAAIWDEIEASKNS 905
KGIRFDLCLTEEQMREAQKWSQPWLEFDMMREYDTSKIEAAIWDEIEASKNS
Sbjct: 241 KGIRFDLCLTEEQMREAQKWSQPWLEFDMMREYDTSKIEAAIWDEIEASKNS 292
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,685,225
Number of extensions: 685245
Number of successful extensions: 2575
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2560
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,854,232
Effective search space: 2417205336
Effective search space used: 2417205336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013743
(1119 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080766.1| 39S ribosomal protein L19, mitochondrial precur... 466 e-131
>ref|NP_080766.1| 39S ribosomal protein L19, mitochondrial precursor [Mus musculus].
Length = 292
Score = 466 bits (1198), Expect = e-131
Identities = 231/292 (79%), Positives = 252/292 (86%)
Frame = +3
Query: 30 MAASITRGSWAAVGLGQSFPPTRALLPAPASVICRTLAGSGRQQVTGSSEPGAFQPPPKP 209
MAAS+ A++ L +S R L A AS CR G R Q TG SEPG F+PPPKP
Sbjct: 1 MAASMAESCRASLYLARSVRMARPRLAAFASDACRVCTGPSRFQSTGPSEPGGFKPPPKP 60
Query: 210 VIVDKRRPQRPETRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 389
VIVD+RR E RFLSPEFIPPRGRTNPLKF+IERKDML+RRK+L IPEFYVGSILRVT
Sbjct: 61 VIVDRRRVPEDERRFLSPEFIPPRGRTNPLKFKIERKDMLDRRKVLPIPEFYVGSILRVT 120
Query: 390 TADPYASAKTSQFLGICIQRSGSGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLE 569
TADPYAS KTSQFLGICI+RSG+GLGATF LRNTIEGQGVEICFELYNPRIQEIQVVKLE
Sbjct: 121 TADPYASGKTSQFLGICIKRSGNGLGATFTLRNTIEGQGVEICFELYNPRIQEIQVVKLE 180
Query: 570 KRLDNSLLYLRDALPEYSTFDVNMKPITQEFNQEVPVNQLKVKMKPKPWSKRWERPKFNI 749
KRLD++LLYLRDALPEYSTFDVNMKP+ QE QEVPVN+LKVKMKPKPWSKRWERP FNI
Sbjct: 181 KRLDDNLLYLRDALPEYSTFDVNMKPVPQEACQEVPVNKLKVKMKPKPWSKRWERPNFNI 240
Query: 750 KGIRFDLCLTEEQMREAQKWSQPWLEFDMMREYDTSKIEAAIWDEIEASKNS 905
KGIRFDL LTEEQM+EAQKW++PW+EFDMMREYDTSKIEAA+W+EIEASK S
Sbjct: 241 KGIRFDLALTEEQMKEAQKWNKPWIEFDMMREYDTSKIEAALWEEIEASKKS 292
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,782,222
Number of extensions: 902183
Number of successful extensions: 3214
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3197
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 270
Effective length of database: 12,523,851
Effective search space: 3381439770
Effective search space used: 3381439770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013743
(1119 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055578.2| 39S ribosomal protein L19, mitochondrial precur... 511 e-145
>ref|NP_055578.2| 39S ribosomal protein L19, mitochondrial precursor [Homo sapiens].
Length = 292
Score = 511 bits (1315), Expect = e-145
Identities = 249/292 (85%), Positives = 262/292 (89%)
Frame = +3
Query: 30 MAASITRGSWAAVGLGQSFPPTRALLPAPASVICRTLAGSGRQQVTGSSEPGAFQPPPKP 209
MAA I G WAA+GLG+SF R LLP PAS+ CR AG RQQ TG SEPGAFQPPPKP
Sbjct: 1 MAACIAAGHWAAMGLGRSFQAARTLLPPPASIACRVHAGPVRQQSTGPSEPGAFQPPPKP 60
Query: 210 VIVDKRRPQRPETRFLSPEFIPPRGRTNPLKFQIERKDMLERRKILHIPEFYVGSILRVT 389
VIVDK RP PE RFLSPEFIP RGRT+PLKFQIERKDMLERRK+LHIPEFYVGSILRVT
Sbjct: 61 VIVDKHRPVEPERRFLSPEFIPRRGRTDPLKFQIERKDMLERRKVLHIPEFYVGSILRVT 120
Query: 390 TADPYASAKTSQFLGICIQRSGSGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLE 569
TADPYAS K SQFLGICIQRSG GLGATFILRN IEGQGVEICFELYNPR+QEIQVVKLE
Sbjct: 121 TADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLE 180
Query: 570 KRLDNSLLYLRDALPEYSTFDVNMKPITQEFNQEVPVNQLKVKMKPKPWSKRWERPKFNI 749
KRLD+SLLYLRDALPEYSTFDVNMKP+ QE NQ+VPVN+LKVKMKPKPWSKRWERP FNI
Sbjct: 181 KRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNI 240
Query: 750 KGIRFDLCLTEEQMREAQKWSQPWLEFDMMREYDTSKIEAAIWDEIEASKNS 905
KGIRFDLCLTE+QM+EAQKW+QPWLEFDMMREYDTSKIEAAIW EIEASK S
Sbjct: 241 KGIRFDLCLTEQQMKEAQKWNQPWLEFDMMREYDTSKIEAAIWKEIEASKRS 292
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,878,034
Number of extensions: 1075647
Number of successful extensions: 3925
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3907
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,868,908
Effective search space: 3999736252
Effective search space used: 3999736252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013743
(1119 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 670 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 670 bits (338), Expect = 0.0
Identities = 388/402 (96%), Gaps = 2/402 (0%)
Strand = Plus / Plus
Query: 685 agctgaaagtaaaaatgaagcctaagccctggtctaaacgctgggaacgtccaaaattta 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71103268 agctgaaagtaaaaatgaagcctaagccctggtctaaacgctgggaacgtccaaaattta 71103327
Query: 745 atattaaggggatcagatttgacctttgtttaactgaagagcaaatgagagaagcccaga 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71103328 atattaaggggatcagatttgacctttgtttaactgaagagcaaatgagagaagcccaga 71103387
Query: 805 agtggagtcagccatggcttgagtttgatatgatgagggaatatgacacttcaaaaattg 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71103388 agtggagtcagccatggcttgagtttgatatgatgagggaatatgacacttcaaaaattg 71103447
Query: 865 aagctgcgatatgggatgaaattgaagcatcaaaaaattcctgatctgagaacgaattta 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71103448 aagctgcgatatgggatgaaattgaagcatcaaaaaattcctgatctgagaacgaattta 71103507
Query: 925 attgtttgcaaaaaatgtactgacttggatttatttggaagccaattt-atctcatatac 983
|||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 71103508 attgtttgcagagaatgtactgacttggatttatttggaagccaatttaatctcatatac 71103567
Query: 984 ataaggacatagttattaaattcactaaccattcatcattttaggggtataattttttga 1043
||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||||||
Sbjct: 71103568 ataaggacatagttattaaatcaactaagcattcatcattttatgggtattattttttga 71103627
Query: 1044 aaattaacacacc-gttttatactttgaaaagaaaaatgtac 1084
|||||| |||||| |||| ||||| |||||||||||||||
Sbjct: 71103628 aaattagcacaccagtttattacttgaaaaagaaaaatgtac 71103669
Score = 365 bits (184), Expect = 3e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 503 aggagttgagatttgttttgagctttataatcctcgaatccaggagattcaagtagtcaa 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71102683 aggagttgagatttgttttgagctttataatcctcgaatccaggagattcaagtagtcaa 71102742
Query: 563 attggagaaacggctggataatagcttgctatacttgcgagatgcccttcctgaatatag 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71102743 attggagaaacggctggataatagcttgctatacttgcgagatgcccttcctgaatatag 71102802
Query: 623 cacttttgatgtgaacatgaagccaataacacaagaatttaaccaagaagttcctgttaa 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71102803 cacttttgatgtgaacatgaagccaataacacaagaatttaaccaagaagttcctgttaa 71102862
Query: 683 tcag 686
||||
Sbjct: 71102863 tcag 71102866
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 369 ggaagcattcttcgtgttactactgctgacccatatgccagtgcaaaaaccagccagttt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71098275 ggaagcattcttcgtgttactactgctgacccatatgccagtgcaaaaaccagccagttt 71098334
Query: 429 ctggggatttgtatccagagatcaggatcaggacttggagctacttttatccttagaaat 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71098335 ctggggatttgtatccagagatcaggatcaggacttggagctacttttatccttagaaat 71098394
Query: 489 actattgaaggacaagg 505
|||||||||||||||||
Sbjct: 71098395 actattgaaggacaagg 71098411
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1 gcgttgtagtctctacccagcgagcaggcatggcggcctctattacaaggggctcctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71096985 gcgttgtagtctctacccagcgagcaggcatggcggcctctattacaaggggctcctggg 71097044
Query: 61 ctgcggtgggcctggggcagagttttccacctacccgggctctgcttcctgcaccagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71097045 ctgcggtgggcctggggcagagttttccacctacccgggctctgcttcctgcaccagcct 71097104
Query: 121 ctgtcatctgccg 133
|||||||||||||
Sbjct: 71097105 ctgtcatctgccg 71097117
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 248 caggttcttgagtcctgagttcattcctccaaggggaagaacaaatcctctgaaatttca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71097945 caggttcttgagtcctgagttcattcctccaaggggaagaacaaatcctctgaaatttca 71098004
Query: 308 aatagaaagaaaagatatgttagaaaggagaaaaatactccacattccagagttctatgt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71098005 aatagaaagaaaagatatgttagaaaggagaaaaatactccacattccagagttctatgt 71098064
Query: 368 tgg 370
|||
Sbjct: 71098065 tgg 71098067
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 133 ggaccctcgcggggtcgggcagacagcaggtcactggatcttctgagcccggcgcgtttc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71097285 ggaccctcgcggggtcgggcagacagcaggtcactggatcttctgagcccggcgcgtttc 71097344
Query: 193 agccgccgccgaaaccggttatcgtggacaagcgccgtccccagcgcccggaaaccaggt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71097345 agccgccgccgaaaccggttatcgtggacaagcgccgtccccagcgcccggaaaccaggt 71097404
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,227,543
Number of extensions: 292
Number of successful extensions: 292
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 6
Length of query: 1119
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1098
Effective length of database: 2,808,413,156
Effective search space: 3083637645288
Effective search space used: 3083637645288
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)