BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013746
(2050 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192252.1| transmembrane 9 superfamily member 2 [Bos ta... 1177 0.0
Alignment gi|NP_001071363.1| transmembrane 9 superfamily member 2 [Bos ta... 719 0.0
Alignment gi|NP_001091546.2| transmembrane 9 superfamily member 4 precurs... 470 e-132
Alignment gi|NP_001180146.1| transmembrane 9 superfamily member 3 [Bos ta... 262 1e-69
Alignment gi|XP_002698456.1| PREDICTED: transmembrane 9 superfamily membe... 262 1e-69
Alignment gi|NP_001077212.1| transmembrane 9 superfamily member 1 precurs... 259 5e-69
Alignment gi|XP_002698455.1| PREDICTED: transmembrane 9 superfamily membe... 171 3e-42
Alignment gi|XP_002703229.1| PREDICTED: transmembrane 9 superfamily membe... 171 3e-42
>ref|NP_001192252.1| transmembrane 9 superfamily member 2 [Bos taurus].
Length = 661
Score = 1177 bits (3044), Expect = 0.0
Identities = 562/595 (94%), Positives = 572/595 (96%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 433
FYLPGLAPVNFC+ EKK+DECK EIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN
Sbjct: 34 FYLPGLAPVNFCEEEKKTDECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 93
Query: 434 LGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 613
LGQVLFGERIEPSPYKF F KEETC LVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI
Sbjct: 94 LGQVLFGERIEPSPYKFTFKKEETCKLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 153
Query: 614 VDNMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIK 793
VDNMPVTWCY+VED QR+CNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIK
Sbjct: 154 VDNMPVTWCYEVEDSQRFCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIK 213
Query: 794 IHYHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSF 973
I+YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIK+AYTYS++F
Sbjct: 214 IYYHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKVAYTYSINF 273
Query: 974 EEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ 1153
EE+K IRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ
Sbjct: 274 EEEKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ 333
Query: 1154 MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN 1333
MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN
Sbjct: 334 MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN 393
Query: 1334 RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI 1513
RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI
Sbjct: 394 RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI 453
Query: 1514 LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS 1693
LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS
Sbjct: 454 LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS 513
Query: 1694 FYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATIL 1873
FYTKPLPGI+MGGILPFGCIFIQLFFILNSIWSHQMYYMFG TCSEATIL
Sbjct: 514 FYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATIL 573
Query: 1874 LCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGYT 2038
LCYFHLCAEDYH WRSFLTSGFTAVYFLIYAIHYF KLQIT TASTILYFGYT
Sbjct: 574 LCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYT 628
>ref|NP_001071363.1| transmembrane 9 superfamily member 2 [Bos taurus].
Length = 626
Score = 719 bits (1856), Expect = 0.0
Identities = 344/519 (66%), Positives = 410/519 (78%), Gaps = 4/519 (0%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 433
FYLPGLAPVNFC+V K++ C++ +EL+VNRLDSVESVLPYEY FDFC + + PSEN
Sbjct: 35 FYLPGLAPVNFCEVNGKTNYCQSSVELYVNRLDSVESVLPYEYNTFDFCHDFKKQSPSEN 94
Query: 434 LGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 613
LGQVLFGERI SPY+F FNK ETC VC K+Y T K + K+KL+FLKK + LNYQHHWI
Sbjct: 95 LGQVLFGERITSSPYEFSFNKSETCVKVCMKSYDTAKEDQKKKLDFLKKGIQLNYQHHWI 154
Query: 614 VDNMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIK 793
+DNMPV WC D+ G +YC GFP+GC++ G + DAC ++ EF++ +T+YIFNHVDI
Sbjct: 155 IDNMPVVWCRDINGGNKYCTTGFPVGCFVPQSGESSDACFMHPEFNKTNTYYIFNHVDIT 214
Query: 794 IHYHVV-ETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVS 970
I YH E ++LV+A+LEPKS+KH + C+G PM+I + ++ I YTYSV
Sbjct: 215 ITYHSENEVDWYVSKLVSARLEPKSYKHVDENHLTCNGTPMEIPGDYTDKLNIIYTYSVK 274
Query: 971 FEEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYN 1150
FEE+K+IRW SRWDYILESM HT IQWFSIMNS VIVLFL+GMVAMI+LRTLHKDI RYN
Sbjct: 275 FEENKQIRWGSRWDYILESMSHTSIQWFSIMNSFVIVLFLTGMVAMIILRTLHKDIIRYN 334
Query: 1151 QMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPA 1330
Q ED Q+++GWKLVH D+FRPPR GMLLS+ LG GTQ+LIMTF+TLF ACLGFLSPA
Sbjct: 335 Q----EDIQKDYGWKLVHADVFRPPRLGMLLSILLGQGTQVLIMTFITLFLACLGFLSPA 390
Query: 1331 NRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNL 1510
NRGALMTC+VVLWVL+G AGYV+A+ YKSF G KWKTN LT+ LCPG+VF D FIMNL
Sbjct: 391 NRGALMTCSVVLWVLMGASAGYVSAKVYKSFRGLKWKTNFFLTALLCPGVVFVDIFIMNL 450
Query: 1511 ILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFG-FKKNAIEHPVRTNQIPRQIPE 1687
ILW EGSS+AI FGTLV ILALWF ISVPLTF+GAY G F+K ++PV TNQIPR IP
Sbjct: 451 ILWIEGSSSAISFGTLVGILALWFGISVPLTFLGAYVGSFQK--FDYPVGTNQIPRHIPH 508
Query: 1688 QSFYTKPLPGIVMGGILPFGCIFIQLFFILNSI--WSHQ 1798
Q F +PL I++GG+LPFGCIFIQLFFILNSI WS +
Sbjct: 509 QDFIRRPLFSIIIGGVLPFGCIFIQLFFILNSICRWSEK 547
>ref|NP_001091546.2| transmembrane 9 superfamily member 4 precursor [Bos taurus].
Length = 642
Score = 470 bits (1210), Expect = e-132
Identities = 256/613 (41%), Positives = 366/613 (59%), Gaps = 18/613 (2%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 433
FY+PG+AP+NF + +E+ +L S + LPYEY + FCQ S+ +EN
Sbjct: 24 FYVPGVAPINFHQNDP--------VEIKAVKLTSSRTQLPYEYYSLPFCQPSKITYKAEN 75
Query: 434 LGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 613
LG+VL G+RI +P++ N E+ C ++C ++ +Q + + + +Y H I
Sbjct: 76 LGEVLRGDRIVNTPFQVLMNSEKKCEVLCGQSNKPVTLTVEQS-RLVAERISEDYYVHLI 134
Query: 614 VDNMPVTW---CYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSE---FHERDTFYIF 775
DN+PV Y DG DK KD + F + + Y+
Sbjct: 135 ADNLPVATRLELYSNRDGD--------------DKKKEKDVQFEHGYRLGFTDVNKIYLH 180
Query: 776 NHVDIKIHYH---VVETGSMGARLVAAKLEPKSFKHTHI---DKPDCSGP------PMDI 919
NH+ ++YH + E R+V ++ P+S + + +K C+ P P +I
Sbjct: 181 NHLSFILYYHREDLEEDREHTYRVVRFEVIPQSVRLEDLKADEKSSCTLPEGTNSSPQEI 240
Query: 920 SNKASGEIKIAYTYSVSFEEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGM 1099
+ E ++ +TYSV +EE I+WASRWD L +M I WFSI+NS+V+V FLSG+
Sbjct: 241 D--PTKENQLYFTYSVHWEESD-IKWASRWDTYL-TMSDVQIHWFSIINSVVVVFFLSGI 296
Query: 1100 VAMIMLRTLHKDIARYNQMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILI 1279
++MI++RTL KDIA YN+ D ED EE GWKLVHGD+FRPP+ M+LS LGSG Q+
Sbjct: 297 LSMIIIRTLRKDIANYNKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFC 356
Query: 1280 MTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLT 1459
M + +F A LG LSP++RGALMT A L++ +G G+ A R Y++ G +WK T
Sbjct: 357 MILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCT 416
Query: 1460 SFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA 1639
+ L PG+VF F++N +WG+ SS A+PF T+VA+L +WF IS+PL ++G YFGF+K
Sbjct: 417 ATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQP 476
Query: 1640 IEHPVRTNQIPRQIPEQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGX 1819
++PVRTNQIPRQIPEQ +Y GI+M GILPFG +FI+LFFI ++IW +Q YY+FG
Sbjct: 477 YDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGF 536
Query: 1820 XXXXXXXXXXTCSEATILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQI 1999
+CS+ +I++ YF LCAEDY WR+FL SG +A Y L+YAI YF+ KL I
Sbjct: 537 LFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDI 596
Query: 2000 TXTASTILYFGYT 2038
++LYFGYT
Sbjct: 597 VEFIPSLLYFGYT 609
>ref|NP_001180146.1| transmembrane 9 superfamily member 3 [Bos taurus].
Length = 587
Score = 262 bits (669), Expect = 1e-69
Identities = 173/598 (28%), Positives = 285/598 (47%), Gaps = 9/598 (1%)
Frame = +2
Query: 269 LAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLG 439
L P D + + + K E+ L++N + + Y+Y + FC S+ E LG
Sbjct: 20 LLPRARADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLG 79
Query: 440 QVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVD 619
+ L G +E S KF + V TY E DK+K + ++ +Y + +D
Sbjct: 80 EALQGVELEFSGLDIKFKDD-----VMPGTY-CEIDLDKEKRDAFVYAIKNHYWYQMYID 133
Query: 620 NMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIH 799
++P+ W ++ + +Y++
Sbjct: 134 DLPI-WG------------------------------IVGEADENGEDYYLWT------- 155
Query: 800 YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEE 979
Y +E G G R+V L + K KI +YSV +++
Sbjct: 156 YKKLEIGFNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKK 197
Query: 980 DKKIRWASRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQM 1156
+++ R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++
Sbjct: 198 SD-VKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKE 256
Query: 1157 DSTEDAQ----EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLS 1324
+ +D +E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L
Sbjct: 257 EEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY 316
Query: 1325 PANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIM 1504
RG++++ A+ ++ GY Y GG +W + + +FL P +V F +
Sbjct: 317 -TERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFI 375
Query: 1505 NLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQI 1681
N I +S AIPFGT+VA+ + F + +PL +G G + + P R N +PR I
Sbjct: 376 NFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPI 435
Query: 1682 PEQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSE 1861
PE+ ++ +P + +GGILPFG IFI+++FI S W++++YY++G
Sbjct: 436 PEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVC 495
Query: 1862 ATILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGY 2035
TI+ YF L AEDY W SFL++ TA+Y +Y+ +Y+ FK ++ T YFGY
Sbjct: 496 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGY 553
>ref|XP_002698456.1| PREDICTED: transmembrane 9 superfamily member 3 isoform 2 [Bos
taurus].
Length = 587
Score = 262 bits (669), Expect = 1e-69
Identities = 173/598 (28%), Positives = 285/598 (47%), Gaps = 9/598 (1%)
Frame = +2
Query: 269 LAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLG 439
L P D + + + K E+ L++N + + Y+Y + FC S+ E LG
Sbjct: 20 LLPRARADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLG 79
Query: 440 QVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVD 619
+ L G +E S KF + V TY E DK+K + ++ +Y + +D
Sbjct: 80 EALQGVELEFSGLDIKFKDD-----VMPGTY-CEIDLDKEKRDAFVYAIKNHYWYQMYID 133
Query: 620 NMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIH 799
++P+ W ++ + +Y++
Sbjct: 134 DLPI-WG------------------------------IVGEADENGEDYYLWT------- 155
Query: 800 YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEE 979
Y +E G G R+V L + K KI +YSV +++
Sbjct: 156 YKKLEIGFNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKK 197
Query: 980 DKKIRWASRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQM 1156
+++ R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++
Sbjct: 198 SD-VKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKE 256
Query: 1157 DSTEDAQ----EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLS 1324
+ +D +E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L
Sbjct: 257 EEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY 316
Query: 1325 PANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIM 1504
RG++++ A+ ++ GY Y GG +W + + +FL P +V F +
Sbjct: 317 -TERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFI 375
Query: 1505 NLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQI 1681
N I +S AIPFGT+VA+ + F + +PL +G G + + P R N +PR I
Sbjct: 376 NFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPI 435
Query: 1682 PEQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSE 1861
PE+ ++ +P + +GGILPFG IFI+++FI S W++++YY++G
Sbjct: 436 PEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVC 495
Query: 1862 ATILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGY 2035
TI+ YF L AEDY W SFL++ TA+Y +Y+ +Y+ FK ++ T YFGY
Sbjct: 496 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGY 553
>ref|NP_001077212.1| transmembrane 9 superfamily member 1 precursor [Bos taurus].
Length = 606
Score = 259 bits (663), Expect = 5e-69
Identities = 173/585 (29%), Positives = 288/585 (49%), Gaps = 16/585 (2%)
Frame = +2
Query: 332 LFVNRLDSVESVLP-YEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFKFNKEETC 508
L+VN++ + Y Y C + + S +LG+VL G+R+ S Y+ +F +
Sbjct: 44 LYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEK 103
Query: 509 TLVCTKTYHTEKAED-KQKLEFLKKSMLLNYQHHWIVDNMPVTWCYDVEDGQRYCNPGFP 685
++C + + E +Q +E L Y ++VD++P+ GF
Sbjct: 104 RVLCHMQLSSAQVEQLRQAIEEL-------YYFEFVVDDLPIR--------------GF- 141
Query: 686 IGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIHYHVVETGSMGARLVAAKLEPKS 865
+G Y+ + G + I ++ H+D + +H G R++ A + +
Sbjct: 142 VG-YMEESGFLPHSHKIG----------LWTHLDFHLEFH-------GDRIIFANVSVRD 183
Query: 866 FKHTHID--KPDCSGPPMDISNKASGEIKIAYTYSVSFEEDKKIRWASRWDYILESM-PH 1036
K +D +PD + + +TYSV + E R + R P
Sbjct: 184 VKPHSLDGLRPD-------------EFLGLTHTYSVRWSETSVERRSDRRRGDDGGFFPR 230
Query: 1037 T-HIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDA-------QEEFGW 1192
T I W SI+NS+V+V L G VA+I++R L D+ARYN + T A
Animal-Genome cDNA 20110601C-013746
Animal-Genome cDNA 20110601C-013746
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013746
(2050 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534172.2| PREDICTED: similar to Transmembrane 9 superfami... 1185 0.0
Alignment gi|XP_854791.1| PREDICTED: similar to Transmembrane 9 superfami... 891 0.0
Alignment gi|XP_534381.2| PREDICTED: similar to Transmembrane 9 superfami... 474 e-133
Alignment gi|XP_859855.1| PREDICTED: similar to Transmembrane 9 superfami... 266 4e-71
Alignment gi|XP_849773.1| PREDICTED: similar to Transmembrane 9 superfami... 262 8e-70
Alignment gi|XP_537385.2| PREDICTED: similar to transmembrane 9 superfami... 257 3e-68
Alignment gi|XP_859824.1| PREDICTED: similar to Transmembrane 9 superfami... 256 8e-68
Alignment gi|XP_859753.1| PREDICTED: similar to Transmembrane 9 superfami... 171 2e-42
Alignment gi|XP_859792.1| PREDICTED: similar to Transmembrane 9 superfami... 124 4e-28
>ref|XP_534172.2| PREDICTED: similar to Transmembrane 9 superfamily protein member 2
precursor (p76) [Canis familiaris].
Length = 662
Score = 1185 bits (3066), Expect = 0.0
Identities = 568/595 (95%), Positives = 574/595 (96%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 433
FYLPGLAPVNFC+ +KKSDECK EIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN
Sbjct: 35 FYLPGLAPVNFCEEDKKSDECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 94
Query: 434 LGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 613
LGQVLFGERIEPSPYKF FNKEETC LVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI
Sbjct: 95 LGQVLFGERIEPSPYKFTFNKEETCKLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 154
Query: 614 VDNMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIK 793
VDNMPVTWCYDVEDGQR+CNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIK
Sbjct: 155 VDNMPVTWCYDVEDGQRFCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIK 214
Query: 794 IHYHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSF 973
I+YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSF
Sbjct: 215 IYYHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSF 274
Query: 974 EEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ 1153
+EDK IRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ
Sbjct: 275 QEDKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ 334
Query: 1154 MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN 1333
MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN
Sbjct: 335 MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN 394
Query: 1334 RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI 1513
RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI
Sbjct: 395 RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI 454
Query: 1514 LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS 1693
LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS
Sbjct: 455 LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS 514
Query: 1694 FYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATIL 1873
FYTKPLPGI+MGGILPFGCIFIQLFFILNSIWSHQMYYMFG TCSEATIL
Sbjct: 515 FYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATIL 574
Query: 1874 LCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGYT 2038
LCYFHLCAEDYH WRSFLTSGFTAVYFLIYAIHYF KLQIT TASTILYFGYT
Sbjct: 575 LCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYT 629
>ref|XP_854791.1| PREDICTED: similar to Transmembrane 9 superfamily protein member 2
precursor (p76) [Canis familiaris].
Length = 695
Score = 891 bits (2302), Expect = 0.0
Identities = 424/596 (71%), Positives = 485/596 (81%), Gaps = 2/596 (0%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEK-KSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSE 430
FYLPGLAPVNFC+ K+ CK+ I LFVNRLDS ESVLPYEY FDFCQAS + PSE
Sbjct: 67 FYLPGLAPVNFCEAAAGKNAACKSSIPLFVNRLDSAESVLPYEYNTFDFCQASGKRNPSE 126
Query: 431 NLGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHW 610
NLGQVLFGERI SPYKF FNK ETC VC K+Y TE +KL FLKK M LNYQHHW
Sbjct: 127 NLGQVLFGERITSSPYKFSFNKTETCRKVCVKSYDTENDNHMRKLAFLKKGMQLNYQHHW 186
Query: 611 IVDNMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDI 790
I+DNMPV WC D+EDG++YC+PGFPIGC+IT G +KDAC+I+S+F++ +TFY+FNH+DI
Sbjct: 187 IIDNMPVIWCQDIEDGRKYCSPGFPIGCFITKTGVSKDACIIHSDFNKSNTFYLFNHIDI 246
Query: 791 KIHYHVVETGSMGA-RLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSV 967
I YH + G RLVAA+L+P+S+KH+ + CSGPPM+IS + + ++ I YTYSV
Sbjct: 247 TITYHKESERNWGVVRLVAARLDPQSYKHSDENNLTCSGPPMEISGENTEKLNITYTYSV 306
Query: 968 SFEEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARY 1147
FEE+K IRWASRWDYILESMPHT+IQWFSIMNS VI+LFLSGMVAMI+LRTLH+DI RY
Sbjct: 307 RFEENKNIRWASRWDYILESMPHTNIQWFSIMNSFVIILFLSGMVAMILLRTLHRDIIRY 366
Query: 1148 NQMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSP 1327
NQ++ ED QE+FGWKLVHGD+FRPP++ MLLSVFLG GTQILIMTFVTLF ACLGFLSP
Sbjct: 367 NQINP-EDIQEDFGWKLVHGDVFRPPKRRMLLSVFLGQGTQILIMTFVTLFLACLGFLSP 425
Query: 1328 ANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMN 1507
ANRGALMTCAVVLW+LLGTPAGYV+AR YK+ G WKTN LLT+ LCPGIVF D FIMN
Sbjct: 426 ANRGALMTCAVVLWILLGTPAGYVSARMYKTLKGVNWKTNFLLTALLCPGIVFVDLFIMN 485
Query: 1508 LILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPE 1687
LILW EGSSAAI F TL+ ILA+WF ISVPLTF+GAYFG KK PV TNQIPR +P+
Sbjct: 486 LILWVEGSSAAISFSTLIGILAMWFGISVPLTFLGAYFGSKKKQFRCPVHTNQIPRHVPQ 545
Query: 1688 QSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEAT 1867
Q+F TKPL GIV+GGILPFGCIFIQLFFILNSIWSHQ+Y+MFG TCSEAT
Sbjct: 546 QTFLTKPLFGIVIGGILPFGCIFIQLFFILNSIWSHQLYFMFGFLFLVFIILLITCSEAT 605
Query: 1868 ILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGY 2035
+LLCYFHLCAEDYH WR+F TS FTAVY +YA+HYFL KLQIT AS ILYFGY
Sbjct: 606 VLLCYFHLCAEDYHWWWRAFFTSSFTAVYLFMYAVHYFLTKLQITGIASIILYFGY 661
>ref|XP_534381.2| PREDICTED: similar to Transmembrane 9 superfamily protein member 4
[Canis familiaris].
Length = 642
Score = 474 bits (1221), Expect = e-133
Identities = 258/613 (42%), Positives = 367/613 (59%), Gaps = 18/613 (2%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 433
FY+PG+AP+NF + +E+ +L S + LPYEY + FCQ S+ +EN
Sbjct: 24 FYVPGVAPINFHQNDP--------VEIKAVKLTSSRTQLPYEYYSLPFCQPSKITYKAEN 75
Query: 434 LGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 613
LG+VL G+RI +P++ N E+ C ++C++T +Q + + + +Y H I
Sbjct: 76 LGEVLRGDRIVNTPFQVLMNSEKKCEVLCSQTNKPVTLTVEQS-RLVAERITEDYYVHLI 134
Query: 614 VDNMPVTW---CYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSE---FHERDTFYIF 775
DN+PV Y DG DK KD + F + + Y+
Sbjct: 135 ADNLPVATRLELYSNRDGD--------------DKKKEKDVQFEHGYRLGFTDVNKIYLH 180
Query: 776 NHVDIKIHYH---VVETGSMGARLVAAKLEPKSFKHTHI---DKPDCSGP------PMDI 919
NH+ ++YH + E R+V ++ P+S + I +K C+ P P +I
Sbjct: 181 NHLSFILYYHREDLEEDQEHTYRVVRFEVIPQSIRLEDIKADEKSSCTLPEGTNSSPQEI 240
Query: 920 SNKASGEIKIAYTYSVSFEEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGM 1099
+ E ++ +TYSV +EE I+WASRWD L +M I WFSI+NS+V+V FLSG+
Sbjct: 241 D--PTKENQLYFTYSVHWEESD-IKWASRWDTYL-TMSDVQIHWFSIINSVVVVFFLSGI 296
Query: 1100 VAMIMLRTLHKDIARYNQMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILI 1279
++MI++RTL KDIA YN+ D ED EE GWKLVHGD+FRPP+ M+LS LGSG Q+
Sbjct: 297 LSMIIIRTLRKDIANYNKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFC 356
Query: 1280 MTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLT 1459
M + +F A LG LSP++RGALMT A L++ +G G+ A R Y++ G +WK T
Sbjct: 357 MILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCT 416
Query: 1460 SFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA 1639
+ L PG+VF F++N +WG+ SS A+PF T+VA+L +WF IS+PL ++G YFGF+K
Sbjct: 417 ATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQP 476
Query: 1640 IEHPVRTNQIPRQIPEQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGX 1819
++PVRTNQIPRQIPEQ +Y GI+M GILPFG +FI+LFFI ++IW +Q YY+FG
Sbjct: 477 YDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGF 536
Query: 1820 XXXXXXXXXXTCSEATILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQI 1999
+CS+ +I++ YF LCAEDY WR+FL SG +A Y L+YAI YF+ KL I
Sbjct: 537 LFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDI 596
Query: 2000 TXTASTILYFGYT 2038
++LYFGYT
Sbjct: 597 VEFIPSLLYFGYT 609
>ref|XP_859855.1| PREDICTED: similar to Transmembrane 9 superfamily protein member 3
precursor (SM-11044 binding protein) (EP70-P-iso) isoform
5 [Canis familiaris].
Length = 583
Score = 266 bits (681), Expect = 4e-71
Identities = 169/587 (28%), Positives = 281/587 (47%), Gaps = 5/587 (0%)
Frame = +2
Query: 290 DVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLGQVLFGER 460
D + + + K E+ L++N + + Y+Y + FC S+ E LG+ L G
Sbjct: 27 DEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVE 86
Query: 461 IEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVDNMPVTWC 640
+E S KF ++ C E DK+K + ++ +Y + +D++P+ W
Sbjct: 87 LEFSGLDIKFKEDVMPATYC------EIDLDKEKRDAFVYAIKNHYWYQMYIDDLPI-WG 139
Query: 641 YDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIHYHVVETG 820
++ + +Y++ Y +E G
Sbjct: 140 ------------------------------IVGEADENGEDYYLWT-------YKKLEIG 162
Query: 821 SMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEEDKKIRWA 1000
G R+V L + K KI +YSV +++ +++
Sbjct: 163 FNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKKSD-VKFE 203
Query: 1001 SRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ 1177
R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++ + +D
Sbjct: 204 DRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMV 263
Query: 1178 EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCA 1357
E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L RG++++ A
Sbjct: 264 NEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY-TERGSMLSTA 322
Query: 1358 VVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSA 1537
+ ++ GY Y GG +W + + +FL P +V F +N I +S
Sbjct: 323 IFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASR 382
Query: 1538 AIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQIPEQSFYTKPLP 1714
AIPFGT+VA+ + F + +PL +G G + + P R N +PR IPE+ ++ +P
Sbjct: 383 AIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAV 442
Query: 1715 GIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATILLCYFHLC 1894
+ +GGILPFG IFI+++FI S W++++YY++G TI+ YF L
Sbjct: 443 IVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLN 502
Query: 1895 AEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGY 2035
AEDY W SFL++ TA+Y +Y+ +Y+ FK ++ T YFGY
Sbjct: 503 AEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGY 549
>ref|XP_849773.1| PREDICTED: similar to Transmembrane 9 superfamily protein member 3
precursor (SM-11044 binding protein) (EP70-P-iso) isoform
1 [Canis familiaris].
Length = 587
Score = 262 bits (670), Expect = 8e-70
Identities = 169/591 (28%), Positives = 282/591 (47%), Gaps = 9/591 (1%)
Frame = +2
Query: 290 DVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLGQVLFGER 460
D + + + K E+ L++N + + Y+Y + FC S+ E LG+ L G
Sbjct: 27 DEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVE 86
Query: 461 IEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVDNMPVTWC 640
+E S KF ++ C E DK+K + ++ +Y + +D++P+ W
Sbjct: 87 LEFSGLDIKFKEDVMPATYC------EIDLDKEKRDAFVYAIKNHYWYQMYIDDLPI-WG 139
Query: 641 YDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIHYHVVETG 820
++ + +Y++ Y +E G
Sbjct: 140 ------------------------------IVGEADENGEDYYLWT-------YKKLEIG 162
Query: 821 SMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEEDKKIRWA 1000
G R+V L + K KI +YSV +++ +++
Sbjct: 163 FNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKKSD-VKFE 203
Query: 1001 SRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ 1177
R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++ + +D
Sbjct: 204 DRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMD 263
Query: 1178 ----EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGAL 1345
+E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L RG++
Sbjct: 264 RDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY-TERGSM 322
Query: 1346 MTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGE 1525
++ A+ ++ GY Y GG +W + + +FL P +V F +N I
Sbjct: 323 LSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYY 382
Query: 1526 GSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQIPEQSFYT 1702
+S AIPFGT+VA+ + F + +PL +G G + + P R N +PR IPE+ ++
Sbjct: 383 HASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFM 442
Query: 1703 KPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATILLCY 1882
+P + +GGILPFG IFI+++FI S W++++YY++G TI+ Y
Sbjct: 443 EPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTY 502
Query: 1883 FHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGY 2035
F L AEDY W SFL++ TA+Y +Y+ +Y+ FK ++ T YFGY
Sbjct: 503 FLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGY 553
>ref|XP_537385.2| PREDICTED: similar to transmembrane 9 superfamily member 1 isoform a
[Canis familiaris].
Length = 606
Score = 257 bits (656), Expect = 3e-68
Identities = 172/585 (29%), Positives = 287/585 (49%), Gaps = 16/585 (2%)
Frame = +2
Query: 332 LFVNRLDSVESVLP-YEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFKFNKEETC 508
L+VN++ + Y Y C + + S +LG+VL G+R+ S Y+ +F +
Sbjct: 44 LYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEK 103
Query: 509 TLVCTKTYHTEKAED-KQKLEFLKKSMLLNYQHHWIVDNMPVTWCYDVEDGQRYCNPGFP 685
++C + + E +Q +E L Y ++VD++P+ GF
Sbjct: 104 RILCHMQLSSAQVEQLRQAIEEL-------YYFEFVVDDLPIR--------------GF- 141
Query: 686 IGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIHYHVVETGSMGARLVAAKLEPKS 865
+G Y+ + G + I ++ H+D + +H G R++ A + +
Sbjct: 142 VG-YMEESGFLPHSHKIG----------LWTHLDFHLEFH-------GDRIIFANVSVRD 183
Query: 866 FKHTHID--KPDCSGPPMDISNKASGEIKIAYTYSVSFEEDKKIRWASRWDYILESM-PH 1036
K +D +PD + + +TYSV + E R + R P
Sbjct: 184 VKPHSLDGLRPD-------------EFLGLTHTYSVRWSETSVERRSDRRRGDDGGFFPR 230
Query: 1037 T-HIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDA-------QEEFGW 1192
T I W SI+NS+V+V L G VA+I++R L D+ARYN + T A Q + GW
Sbjct: 231 TLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETTSAGSGDDFDQGDNGW 290
Query: 1193 KLVHGDIFR-PPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLW 1369
K++H D+FR PP +G+L +V LG G Q L + + A LG + GA+ + A++L+
Sbjct: 291 KIIHTDVFRFPPYRGLLCAV-LGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLY 349
Query: 1370 VLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPF 1549
L +GYV++ FY+ GGE+W N++LT+ L F + ++N + W GS+ A+P
Sbjct: 350 ALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPA 409
Query: 1550 GTLVAILALWFCISVPLTFIGAYFGFKKNA--IEHPVRTNQIPRQIPEQSFYTKPLPGIV 1723
T++ +L +W + PLT IG FG K NA + P RT I R+IP Q +Y L +
Sbjct: 410 TTILLLLTVWLLVGFPLTVIGGIFG-KNNASPFDAPCRTKNIAREIPPQPWYKSTLIHMT 468
Query: 1724 MGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATILLCYFHLCAED 1903
+GG LPF I ++L++I ++W + Y ++G + +I L YF L ED
Sbjct: 469 VGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGED 528
Query: 1904 YHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGYT 2038
Y WRS L+ G T ++ +Y++ Y+ + ++ T+ +FGY+
Sbjct: 529 YRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYS 573
>ref|XP_859824.1| PREDICTED: similar to Transmembrane 9 superfamily protein member 3
precursor (SM-11044 binding protein) (EP70-P-iso) isoform
4 [Canis familiaris].
Length = 599
Score = 256 bits (653), Expect = 8e-68
Identities = 170/603 (28%), Positives = 283/603 (46%), Gaps = 21/603 (3%)
Frame = +2
Query: 290 DVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLGQVLFGER 460
D + + + K E+ L++N + + Y+Y + FC S+ E LG+ L G
Sbjct: 27 DEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVE 86
Query: 461 IEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVDNMPVTWC 640
+E S KF ++ C E DK+K + ++ +Y + +D++P+ W
Sbjct: 87 LEFSGLDIKFKEDVMPATYC------EIDLDKEKRDAFVYAIKNHYWYQMYIDDLPI-WG 139
Query: 641 YDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIHYHVVETG 820
++ + +Y++ Y +E G
Sbjct: 140 ------------------------------IVGEADENGEDYYLWT-------YKKLEIG 162
Query: 821 SMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEEDKKIRWA 1000
G R+V L + K KI +YSV +++ +++
Sbjct: 163 FNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKKSD-VKFE 203
Query: 1001 SRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ 1177
R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++ + +D
Sbjct: 204 DRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMD 263
Query: 1178 ----EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGAL 1345
+E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L RG++
Sbjct: 264 RDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY-TERGSM 322
Query: 1346 MTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGE 1525
++ A+ ++ GY Y GG +W + + +FL P +V F +N I
Sbjct: 323 LSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYY 382
Query: 1526 GSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQIPEQSFYT 1702
+S AIPFGT+VA+ + F + +PL +G G + + P R N +PR IPE+ ++
Sbjct: 383 HASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFM 442
Query: 1703 KPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATILLCY 1882
+P + +GGILPFG IFI+++FI S W++++YY++G TI+ Y
Sbjct: 443 EPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTY 502
Query: 1883 FHLCAEDYHLA------------WRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILY 2026
F L AEDY A W SFL++ TA+Y +Y+ +Y+ FK ++ T Y
Sbjct: 503 FLLNAEDYRCAIHSKELLYFFRQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFY 562
Query: 2027 FGY 2035
FGY
Sbjct: 563 FGY 565
>ref|XP_859753.1| PREDICTED: similar to Transmembrane 9 superfamily protein member 3
precursor isoform 2 [Canis familiaris].
Length = 440
Score = 171 bits (433), Expect = 2e-42
Identities = 126/478 (26%), Positives = 215/478 (44%), Gaps = 9/478 (1%)
Frame = +2
Query: 290 DVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLGQVLFGER 460
D + + + K E+ L++N + + Y+Y + FC S+ E LG+ L G
Sbjct: 27 DEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVE 86
Query: 461 IEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVDNMPVTWC 640
+E S KF + C E DK+K + ++ +Y + +D++P+ W
Sbjct: 87 LEFSGLDIKFKGNSPMSTYC------EIDLDKEKRDAFVYAIKNHYWYQMYIDDLPI-WG 139
Query: 641 YDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIHYHVVETG 820
++ + +Y++ Y +E G
Sbjct: 140 ------------------------------IVGEADENGEDYYLWT-------YKKLEIG 162
Query: 821 SMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEEDKKIRWA 1000
G R+V L + K KI +YSV +++ +++
Sbjct: 163 FNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKKSD-VKFE 203
Query: 1001 SRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQ 1177
R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++ + +D
Sbjct: 204 DRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMD 263
Query: 1178 ----EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGAL 1345
+E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L RG++
Sbjct: 264 RDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY-TERGSM 322
Query: 1346 MTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGE 1525
++ A+ ++ GY Y GG +W + + +FL P +V F +N I
Sbjct: 323 LSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYY 382
Query: 1526 GSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQIPEQSF 1696
+S AIPFGT+VA+ + F + +PL +G G + + P R N +PR IPE+ +
Sbjct: 383 HASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKW 440
>ref|XP_859792.1| PREDICTED: similar to Transmembrane 9 superfamily protein member 3
precursor (SM-11044 binding protein) (EP70-P-iso) isoform
3 [Canis familiaris].
Length = 386
Score = 124 bits (310), Expect = 4e-28
Identities = 63/185 (34%), Positives = 101/185 (54%), Gaps = 6/185 (3%)
Frame = +2
Query: 1499 IMNLILWGEGSSAAIPFGTL-----VAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRT 1660
I+++ L EG +P + VA+ + F + +PL +G G + + P R
Sbjct: 168 IVDVNLTSEGKVKLVPNTKIQMSYSVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRV 227
Query: 1661 NQIPRQIPEQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXX 1840
N +PR IPE+ ++ +P + +GGILPFG IFI+++FI S W++++YY++G
Sbjct: 228 NAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVI 287
Query: 1841 XXXTCSEATILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTI 2020
TI+ YF L AEDY W SFL++ TA+Y +Y+ +Y+ FK ++ T
Sbjct: 288 LCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTS 347
Query: 2021 LYFGY 2035
YFGY
Sbjct: 348 FYFGY 352
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 72,584,876
Number of extensions: 1741931
Number of successful extensions: 4651
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4620
Number of HSP's successfully gapped: 9
Length of query: 683
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 573
Effective length of database: 15,207,544
Effective search space: 8713922712
Effective search space used: 8713922712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Q + GW
Sbjct: 231 TLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETASAGSGDDFDQSDNGW 290
Query: 1193 KLVHGDIFR-PPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLW 1369
K++H D+FR PP +G+L +V LG G Q L + + A LG + GA+ + A++L+
Sbjct: 291 KIIHTDVFRFPPYRGLLCAV-LGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLY 349
Query: 1370 VLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPF 1549
L +GYV++ FY+ GGE+W N++LT+ L F + ++N + W GS+ A+P
Sbjct: 350 ALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPA 409
Query: 1550 GTLVAILALWFCISVPLTFIGAYFGFKKNA--IEHPVRTNQIPRQIPEQSFYTKPLPGIV 1723
T++ +L +W + PLT IG FG K NA + P RT I R+IP Q +Y L +
Sbjct: 410 TTILLLLTVWLLVGFPLTVIGGIFG-KNNASPFDAPCRTKNIAREIPPQPWYKSTLVHMT 468
Query: 1724 MGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATILLCYFHLCAED 1903
+GG LPF I ++L++I ++W + Y ++G + +I L YF L ED
Sbjct: 469 VGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGED 528
Query: 1904 YHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGYT 2038
Y WRS L+ G T ++ +Y++ Y+ + ++ T T+ +FGY+
Sbjct: 529 YRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGTVQTVEFFGYS 573
>ref|XP_002698455.1| PREDICTED: transmembrane 9 superfamily member 3 isoform 1 [Bos
taurus].
Length = 440
Score = 171 bits (432), Expect = 3e-42
Identities = 130/485 (26%), Positives = 219/485 (45%), Gaps = 9/485 (1%)
Frame = +2
Query: 269 LAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLG 439
L P D + + + K E+ L++N + + Y+Y + FC S+ E LG
Sbjct: 20 LLPRARADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLG 79
Query: 440 QVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVD 619
+ L G +E S KF + V TY E DK+K + ++ +Y + +D
Sbjct: 80 EALQGVELEFSGLDIKFKDD-----VMPGTY-CEIDLDKEKRDAFVYAIKNHYWYQMYID 133
Query: 620 NMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIH 799
++P+ W ++ + +Y++
Sbjct: 134 DLPI-WG------------------------------IVGEADENGEDYYLWT------- 155
Query: 800 YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEE 979
Y +E G G R+V L + K KI +YSV +++
Sbjct: 156 YKKLEIGFNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKK 197
Query: 980 DKKIRWASRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQM 1156
+++ R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++
Sbjct: 198 SD-VKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKE 256
Query: 1157 DSTEDAQ----EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLS 1324
+ +D +E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L
Sbjct: 257 EEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY 316
Query: 1325 PANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIM 1504
RG++++ A+ ++ GY Y GG +W + + +FL P +V F +
Sbjct: 317 -TERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFI 375
Query: 1505 NLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQI 1681
N I +S AIPFGT+VA+ + F + +PL +G G + + P R N +PR I
Sbjct: 376 NFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPI 435
Query: 1682 PEQSF 1696
PE+ +
Sbjct: 436 PEKKW 440
>ref|XP_002703229.1| PREDICTED: transmembrane 9 superfamily member 3 [Bos taurus].
Length = 440
Score = 171 bits (432), Expect = 3e-42
Identities = 130/485 (26%), Positives = 219/485 (45%), Gaps = 9/485 (1%)
Frame = +2
Query: 269 LAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLG 439
L P D + + + K E+ L++N + + Y+Y + FC S+ E LG
Sbjct: 20 LLPRARADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLG 79
Query: 440 QVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVD 619
+ L G +E S KF + V TY E DK+K + ++ +Y + +D
Sbjct: 80 EALQGVELEFSGLDIKFKDD-----VMPGTY-CEIDLDKEKRDAFVYAIKNHYWYQMYID 133
Query: 620 NMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIH 799
++P+ W ++ + +Y++
Sbjct: 134 DLPI-WG------------------------------IVGEADENGEDYYLWT------- 155
Query: 800 YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEE 979
Y +E G G R+V L + K KI +YSV +++
Sbjct: 156 YKKLEIGFNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKK 197
Query: 980 DKKIRWASRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQM 1156
+++ R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++
Sbjct: 198 SD-VKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKE 256
Query: 1157 DSTEDAQ----EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLS 1324
+ +D +E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L
Sbjct: 257 EEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY 316
Query: 1325 PANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIM 1504
RG++++ A+ ++ GY Y GG +W + + +FL P +V F +
Sbjct: 317 -TERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFI 375
Query: 1505 NLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQI 1681
N I +S AIPFGT+VA+ + F + +PL +G G + + P R N +PR I
Sbjct: 376 NFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPI 435
Query: 1682 PEQSF 1696
PE+ +
Sbjct: 436 PEKKW 440
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 69,790,657
Number of extensions: 1717981
Number of successful extensions: 4740
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4708
Number of HSP's successfully gapped: 8
Length of query: 683
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 574
Effective length of database: 14,074,782
Effective search space: 8078924868
Effective search space used: 8078924868
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013746
(2050 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134442.2| PREDICTED: transmembrane 9 superfamily membe... 458 e-129
Alignment gi|XP_001925227.2| PREDICTED: transmembrane 9 superfamily membe... 262 5e-70
Alignment gi|XP_003128597.2| PREDICTED: transmembrane 9 superfamily membe... 239 4e-63
Alignment gi|XP_003357928.1| PREDICTED: transmembrane 9 superfamily membe... 166 6e-41
>ref|XP_003134442.2| PREDICTED: transmembrane 9 superfamily member 4 [Sus scrofa].
Length = 617
Score = 458 bits (1179), Expect = e-129
Identities = 247/583 (42%), Positives = 352/583 (60%), Gaps = 18/583 (3%)
Frame = +2
Query: 344 RLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFKFNKEETCTLVCT 523
+L S + LPYEY + FCQ S+ +ENLG+VL G+RI +P++ N E+ C ++C+
Sbjct: 21 KLTSSRTQLPYEYYSLPFCQPSKITYKAENLGEVLRGDRIVNTPFQVFMNSEKKCEVLCS 80
Query: 524 KTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVDNMPVTW---CYDVEDGQRYCNPGFPIGC 694
++ +Q + + + +Y H I DN+PV Y DG
Sbjct: 81 QSNKPVTLTVEQS-RLVAERITEDYYVHLIADNLPVATRLELYSNRDGD----------- 128
Query: 695 YITDKGHAKDACVINSE---FHERDTFYIFNHVDIKIHYH---VVETGSMGARLVAAKLE 856
DK KD + F + + Y+ NH+ ++YH + E R+V ++
Sbjct: 129 ---DKKKEKDVQFEHGYRLGFTDVNKIYLHNHLSFILYYHREDLEEDQEHTYRVVRFEVI 185
Query: 857 PKSFKHTHI---DKPDCSGP------PMDISNKASGEIKIAYTYSVSFEEDKKIRWASRW 1009
P+S + + +K C+ P P +I + E ++ +TYSV +EE I+WASRW
Sbjct: 186 PQSIRLEDLKADEKGSCTLPEGTNSSPQEID--PTKENQLYFTYSVHWEESD-IKWASRW 242
Query: 1010 DYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQEEFG 1189
D L +M I WFSI+NS+V+V FLSG+++MI++RTL KDIA YN+ D ED EE G
Sbjct: 243 DTYL-TMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANYNKEDDIEDTMEESG 301
Query: 1190 WKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLW 1369
WKLVHGD+FRPP+ M+LS LGSG Q+ M + +F A LG LSP++RGALMT A L+
Sbjct: 302 WKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLF 361
Query: 1370 VLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPF 1549
+ +G G+ A R Y++ G +WK T+ L PG+VF F++N +WG+ SS A+PF
Sbjct: 362 MFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPF 421
Query: 1550 GTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIVMG 1729
T+VA+L +WF IS+PL ++G YFGF+K ++PVRTNQIPRQIPEQ +Y GI+M
Sbjct: 422 PTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMA 481
Query: 1730 GILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATILLCYFHLCAEDYH 1909
GILPFG +FI+LFFI ++IW +Q YY+FG +CS+ +I++ YF LCAEDY
Sbjct: 482 GILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYR 541
Query: 1910 LAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGYT 2038
WR+FL SG +A Y L+YAI YF+ KL I ++LYFGYT
Sbjct: 542 WWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYT 584
>ref|XP_001925227.2| PREDICTED: transmembrane 9 superfamily member 3 [Sus scrofa].
Length = 587
Score = 262 bits (670), Expect = 5e-70
Identities = 171/598 (28%), Positives = 283/598 (47%), Gaps = 9/598 (1%)
Frame = +2
Query: 269 LAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLG 439
L P D + + + K E+ L++N + + Y+Y + FC S+ E LG
Sbjct: 20 LLPRARADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLG 79
Query: 440 QVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVD 619
+ L G +E S KF + C E DK+K + ++ +Y + +D
Sbjct: 80 EALQGVELEFSGLDIKFKDDVMPATYC------EIDLDKEKRDAFVYAIKNHYWYQMYID 133
Query: 620 NMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIH 799
++P+ W ++ + +Y++
Sbjct: 134 DLPI-WG------------------------------IVGEADENGEDYYLWT------- 155
Query: 800 YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEE 979
Y +E G G R+V L + K KI +YSV +++
Sbjct: 156 YKKLEIGFNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKK 197
Query: 980 DKKIRWASRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQM 1156
+++ R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++
Sbjct: 198 SD-VKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKE 256
Query: 1157 DSTEDAQ----EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLS 1324
+ +D +E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L
Sbjct: 257 EEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY 316
Query: 1325 PANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIM 1504
RG++++ A+ ++ GY Y GG +W + + +FL P +V F +
Sbjct: 317 -TERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFI 375
Query: 1505 NLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQI 1681
N I +S AIPFGT+VA+ + F + +PL +G G + + P R N +PR I
Sbjct: 376 NFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPI 435
Query: 1682 PEQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSE 1861
PE+ ++ +P + +GGILPFG IFI+++FI S W++++YY++G
Sbjct: 436 PEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVC 495
Query: 1862 ATILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGY 2035
TI+ YF L AEDY W SFL++ TA+Y +Y+ +Y+ FK ++ T YFGY
Sbjct: 496 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGY 553
>ref|XP_003128597.2| PREDICTED: transmembrane 9 superfamily member 1 [Sus scrofa].
Length = 519
Score = 239 bits (610), Expect = 4e-63
Identities = 158/538 (29%), Positives = 264/538 (49%), Gaps = 15/538 (2%)
Frame = +2
Query: 470 SPYKFKFNKEETCTLVCTKTYHTEKAED-KQKLEFLKKSMLLNYQHHWIVDNMPVTWCYD 646
S Y+ +F + ++C ++ + E +Q +E L Y ++VD++P+
Sbjct: 4 SLYEIRFRENVEKRILCHMQLNSAQVEQLRQAIEEL-------YYFEFVVDDLPIR---- 52
Query: 647 VEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIHYHVVETGSM 826
GF +G Y+ + G + I ++ H+D + +H
Sbjct: 53 ----------GF-VG-YMEESGFLPHSHKIG----------LWTHLDFHLEFH------- 83
Query: 827 GARLVAAKLEPKSFKHTHID--KPDCSGPPMDISNKASGEIKIAYTYSVSFEEDKKIRWA 1000
G R++ A + + K +D +PD + + +TYSV + E R +
Sbjct: 84 GDRIIFANVSVRDVKPHSLDGLRPD-------------EFLGLTHTYSVRWSETSVERRS 130
Query: 1001 SRWDYILESM-PHT-HIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDA 1174
R P T I W SI+NS+V+V L G VA+I++R L D+ARYN + T
Sbjct: 131 DRRRGDDGGFFPRTLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETTSG 190
Query: 1175 -------QEEFGWKLVHGDIFR-PPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPA 1330
Q + GWK++H D+FR PP +G+L +V LG G Q L + + A LG +
Sbjct: 191 GSGDDFEQGDNGWKIIHTDVFRFPPYRGLLCAV-LGVGAQFLALGTGIIVMALLGMFNVH 249
Query: 1331 NRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNL 1510
GA+ + A++L+ L +GYV++ FY+ GGE+W N++LT+ L F + ++N
Sbjct: 250 RHGAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNS 309
Query: 1511 ILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA--IEHPVRTNQIPRQIP 1684
+ W GS+ A+P T++ +L +W + PLT IG FG K NA + P RT I R+IP
Sbjct: 310 VHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFG-KNNASLFDAPCRTKNIAREIP 368
Query: 1685 EQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEA 1864
Q +Y L + +GG LPF I ++L++I ++W + Y ++G +
Sbjct: 369 PQPWYKSTLIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACI 428
Query: 1865 TILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGYT 2038
+I L YF L EDY WRS L+ G T ++ +Y++ Y+ + ++ T+ +FGY+
Sbjct: 429 SIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGVVQTVEFFGYS 486
>ref|XP_003357928.1| PREDICTED: transmembrane 9 superfamily member 2-like [Sus scrofa].
Length = 136
Score = 166 bits (419), Expect = 6e-41
Identities = 85/111 (76%), Positives = 85/111 (76%)
Frame = +2
Query: 149 MSARLSASFXXXXXXXXXXXXXXXXXXXXXXXXXXFYLPGLAPVNFCDVEKKSDECKTEI 328
MSARLSASF FYLPGLAPVNFCDVEKKSDECKTEI
Sbjct: 1 MSARLSASFPSRWPRLWLLSLLLLGAAPGPRRGAAFYLPGLAPVNFCDVEKKSDECKTEI 60
Query: 329 ELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYK 481
ELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYK
Sbjct: 61 ELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYK 111
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,006,146
Number of extensions: 1127987
Number of successful extensions: 2937
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2925
Number of HSP's successfully gapped: 4
Length of query: 683
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 577
Effective length of database: 8,704,850
Effective search space: 5022698450
Effective search space used: 5022698450
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013746
(2050 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542123.3| transmembrane 9 superfamily member 2 precursor ... 1161 0.0
Alignment gi|NP_001122097.1| hypothetical protein LOC245423 [Mus musculus]. 627 e-180
Alignment gi|NP_598608.2| transmembrane 9 superfamily member 4 precursor ... 469 e-132
Alignment gi|NP_579930.1| transmembrane 9 superfamily member 3 precursor ... 261 1e-69
Alignment gi|NP_083056.2| transmembrane 9 superfamily member 1 precursor ... 255 8e-68
>ref|NP_542123.3| transmembrane 9 superfamily member 2 precursor [Mus musculus].
Length = 662
Score = 1161 bits (3003), Expect = 0.0
Identities = 557/595 (93%), Positives = 571/595 (95%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 433
FYLPGLAPVNFC E+KS+ECK +IELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN
Sbjct: 36 FYLPGLAPVNFC-AEEKSNECKADIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 94
Query: 434 LGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 613
LGQVLFGERIEPSPYKF FNK+ETC LVCTKTY+TEKAEDKQKL+FLKKSMLLNYQHHWI
Sbjct: 95 LGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYNTEKAEDKQKLDFLKKSMLLNYQHHWI 154
Query: 614 VDNMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIK 793
VDNMPVTWCY+VED Q++CNPGFPIGCYITDKGHAKDACVI+SEFHERDTFYIFNHVDIK
Sbjct: 155 VDNMPVTWCYEVEDSQKFCNPGFPIGCYITDKGHAKDACVISSEFHERDTFYIFNHVDIK 214
Query: 794 IHYHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSF 973
I+YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGP MDISNKASGEIKIAYTYS+SF
Sbjct: 215 IYYHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPAMDISNKASGEIKIAYTYSISF 274
Query: 974 EEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ 1153
EE+K IRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ
Sbjct: 275 EEEKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ 334
Query: 1154 MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN 1333
MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN
Sbjct: 335 MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN 394
Query: 1334 RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI 1513
RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI
Sbjct: 395 RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI 454
Query: 1514 LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS 1693
LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS
Sbjct: 455 LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS 514
Query: 1694 FYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATIL 1873
FYTKPLPGI+MGGILPFGCIFIQLFFILNSIWSHQMYYMFG TCSEATIL
Sbjct: 515 FYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATIL 574
Query: 1874 LCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGYT 2038
LCYFHLCAEDYH WRSFLTSGFTAVYFLIYAIHYF KLQIT TASTILYFGYT
Sbjct: 575 LCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYT 629
>ref|NP_001122097.1| hypothetical protein LOC245423 [Mus musculus].
Length = 671
Score = 627 bits (1618), Expect = e-180
Identities = 290/595 (48%), Positives = 406/595 (68%), Gaps = 1/595 (0%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 433
F+ PGL PV +C+ + CK+ I+++ ++L SV+SV+ Y+Y +FDFCQ S + PSE
Sbjct: 44 FFFPGLVPVTYCEEGHPNSYCKSSIQVYADKLYSVDSVMFYDYDSFDFCQDSLKRTPSET 103
Query: 434 LGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 613
LGQ+LFGE++ PYKF FNK+ETC VC K+Y + +D KL FLKK + +Y+HHWI
Sbjct: 104 LGQILFGEQVTSCPYKFSFNKDETCRKVCVKSYAPDNEDDMNKLAFLKKGIKQDYRHHWI 163
Query: 614 VDNMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIK 793
VDN + WCYD E+ + +C GFPIGC+ K +C+IN EF++ ++ Y+FNH+DI
Sbjct: 164 VDNTGIIWCYDTENEEHHCMSGFPIGCFNAPSDQVKGSCLINPEFNKNNSLYLFNHLDIT 223
Query: 794 IHYHVV-ETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVS 970
I YH+ +T A+L++++++PKS+KH D C+ PPM+I + + + + YTYSV
Sbjct: 224 ITYHIESDTTVKVAKLISSRVDPKSYKHLDEDHLTCNEPPMEIPEEDTENLNVIYTYSVK 283
Query: 971 FEEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYN 1150
FEE K W+S DY L+S T +QW ++NS +VLFL G+V +++LR++ +DIA++N
Sbjct: 284 FEESKATEWSSEGDYDLDSTAETSLQWIRLVNSFFVVLFLCGLVVILLLRSIWRDIAKFN 343
Query: 1151 QMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPA 1330
++ + + FGW+L+HG++FR P GMLLS+ LG GTQ+ IMTF++LF A LGFL+PA
Sbjct: 344 RIKISVYDRRLFGWRLIHGNLFRLPEHGMLLSILLGQGTQVFIMTFLSLFLAGLGFLTPA 403
Query: 1331 NRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNL 1510
++ L+ VVLW+ L PAGY++A+ YK+F G WK + LLT+ L PGIVFAD FIMNL
Sbjct: 404 DQNVLVNYGVVLWLALEIPAGYMSAKMYKTFKGINWKMHFLLTTVLFPGIVFADIFIMNL 463
Query: 1511 ILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQ 1690
ILW +GS AAI F TL ++ AL+F +S PLTF+G YFG K+ E PV + P++
Sbjct: 464 ILWMDGSPAAISFCTLASLFALYFGVSTPLTFLGVYFG-KREKFEFPVYAPKHEHGSPQR 522
Query: 1691 SFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATI 1870
+F+ K I++G +LPFGCIF+QL +ILN IWS MYY+F +CSE T+
Sbjct: 523 TFFPKSTITIILGSLLPFGCIFLQLSYILNRIWSPHMYYLFAFLLLLFLIFMISCSEVTV 582
Query: 1871 LLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGY 2035
LLCYF LCAED WR+FLTS FT+ Y IY IHYF KLQ+T ST +YFGY
Sbjct: 583 LLCYFRLCAEDRGWWWRAFLTSSFTSAYIFIYVIHYFFTKLQVTSIGSTFMYFGY 637
>ref|NP_598608.2| transmembrane 9 superfamily member 4 precursor [Mus musculus].
Length = 643
Score = 469 bits (1208), Expect = e-132
Identities = 253/610 (41%), Positives = 365/610 (59%), Gaps = 15/610 (2%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 433
FY+PG+AP+NF + +E+ +L S + LPYEY + FCQ + +EN
Sbjct: 24 FYVPGVAPINFHQNDP--------VEIKAVKLTSSRTQLPYEYYSLPFCQPIKITYKAEN 75
Query: 434 LGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 613
LG+VL G+RI +P++ N E+ C ++C ++ +Q + + + Y H I
Sbjct: 76 LGEVLRGDRIVNTPFQVLMNSEKKCEVLCNQSNKPITLTVEQS-RLVAERITEEYYVHLI 134
Query: 614 VDNMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSE---FHERDTFYIFNHV 784
DN+PV ++ R + DK KD + F + + Y+ NH+
Sbjct: 135 ADNLPVATRLELYSSNRDSD----------DKKKEKDVQFEHGYRLGFTDVNKIYLHNHL 184
Query: 785 DIKIHYH---VVETGSMGARLVAAKLEPKSFKHTHI---DKPDCSGP------PMDISNK 928
++YH + E R+V ++ P+S + + +K C+ P P +I
Sbjct: 185 SFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKTGEKSSCTLPEGANSLPQEID-- 242
Query: 929 ASGEIKIAYTYSVSFEEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAM 1108
+ E ++ +TYSV +EE I+WASRWD L +M I WFSI+NS+V+V FLSG+++M
Sbjct: 243 PTKENQLYFTYSVHWEESD-IKWASRWDTYL-TMSDVQIHWFSIINSVVVVFFLSGILSM 300
Query: 1109 IMLRTLHKDIARYNQMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTF 1288
I++RTL KDIA YN+ D ED EE GWKLVHGD+FRPP+ M+LS LGSG Q+ M
Sbjct: 301 IIIRTLRKDIANYNKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMIL 360
Query: 1289 VTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFL 1468
+ +F A LG LSP++RGALMT A L++ +G G+ A R Y++ G +WK T+ L
Sbjct: 361 IVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATL 420
Query: 1469 CPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH 1648
PG+VF F++N +WG+ SS A+PF T+VA+L +WF IS+PL ++G YFGF+K ++
Sbjct: 421 YPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDN 480
Query: 1649 PVRTNQIPRQIPEQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXX 1828
PVRTNQIPRQIPEQ +Y GI+M GILPFG +FI+LFFI ++IW +Q YY+FG
Sbjct: 481 PVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFL 540
Query: 1829 XXXXXXXTCSEATILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXT 2008
+CS+ +I++ YF LCAEDY WR+FL SG +A Y L+YAI YF+ KL I
Sbjct: 541 VFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF 600
Query: 2009 ASTILYFGYT 2038
++LYFGYT
Sbjct: 601 IPSLLYFGYT 610
>ref|NP_579930.1| transmembrane 9 superfamily member 3 precursor [Mus musculus].
Length = 587
Score = 261 bits (668), Expect = 1e-69
Identities = 173/598 (28%), Positives = 285/598 (47%), Gaps = 9/598 (1%)
Frame = +2
Query: 269 LAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLG 439
L P D + + + K E+ L++N + + Y+Y + FC S+ E LG
Sbjct: 20 LLPRARSDEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLG 79
Query: 440 QVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVD 619
+ L G +E S KF + V TY E DK+K + ++ +Y + +D
Sbjct: 80 EALQGVELEFSGLDIKFKDD-----VMPGTY-CEIDLDKEKRDAFVYAIKNHYWYQMYID 133
Query: 620 NMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIH 799
++P+ W ++ + +Y++
Sbjct: 134 DLPI-WG------------------------------IVGEADENGEDYYLWT------- 155
Query: 800 YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEE 979
Y +E G G R+V L + K KI +YSV +++
Sbjct: 156 YKKLEIGFNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKK 197
Query: 980 DKKIRWASRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQM 1156
+++ R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++
Sbjct: 198 SD-VKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKE 256
Query: 1157 DSTEDAQ----EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLS 1324
+ +D +E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L
Sbjct: 257 EEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY 316
Query: 1325 PANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIM 1504
RG++++ A+ ++ GY Y GG +W + + +FL P +V F +
Sbjct: 317 -TERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFI 375
Query: 1505 NLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQI 1681
N I +S AIPFGT+VA+ + F + +PL +G G + + P R N +PR I
Sbjct: 376 NFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPI 435
Query: 1682 PEQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSE 1861
PE+ ++ +P + +GGILPFG IFI+++FI S W++++YY++G
Sbjct: 436 PEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVC 495
Query: 1862 ATILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGY 2035
TI+ YF L AEDY W SFL++ TA+Y +Y+ +Y+ FK ++ T YFGY
Sbjct: 496 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGY 553
>ref|NP_083056.2| transmembrane 9 superfamily member 1 precursor [Mus musculus].
Length = 606
Score = 255 bits (652), Expect = 8e-68
Identities = 171/584 (29%), Positives = 285/584 (48%), Gaps = 15/584 (2%)
Frame = +2
Query: 332 LFVNRLDSVESVLP-YEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFKFNKEETC 508
L+VN++ + Y Y C + + S +LG+VL G+R+ S Y+ +F +
Sbjct: 44 LYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEK 103
Query: 509 TLVCTKTYHTEKAED-KQKLEFLKKSMLLNYQHHWIVDNMPVTWCYDVEDGQRYCNPGFP 685
++C + + E +Q +E L Y ++VD++P+ GF
Sbjct: 104 RILCHMQLSSAQVEQLRQAIEEL-------YYFEFVVDDLPIR--------------GF- 141
Query: 686 IGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIHYHVVETGSMGARLVAAKLEPKS 865
+G Y+ + G + I ++ H+D + +H G R++ A + +
Sbjct: 142 VG-YMEESGFLPHSHKIG----------LWTHLDFHLEFH-------GDRIIFANVSVRD 183
Query: 866 FKHTHIDKPDCSGPPMDISNKASGEIK-IAYTYSVSFEEDK-KIRWASRWDYILESMPHT 1039
K P + S E+ + +TYSV + E + R R P T
Sbjct: 184 VK------------PHSLDGLRSDELLGLTHTYSVRWSETSVEHRSDRRRGDDGGFFPRT 231
Query: 1040 -HIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDA-------QEEFGWK 1195
I W SI+NS+V+V L G VA+I++R L D+ARYN + T Q + GWK
Sbjct: 232 LEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETSSGGSSDDFDQGDNGWK 291
Query: 1196 LVHGDIFR-PPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWV 1372
++H D+FR PP +G+L +V LG G Q L + + A LG + GA+ + A++L+
Sbjct: 292 IIHTDVFRFPPYRGLLCAV-LGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLYA 350
Query: 1373 LLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFG 1552
L +GYV++ FY+ GGE+W N++LTS L F + ++N + W GS+ A+P
Sbjct: 351 LTCCISGYVSSHFYRQIGGERWVWNIILTSSLFSVPFFLTWSVVNSVHWANGSTQALPAT 410
Query: 1553 TLVAILALWFCISVPLTFIGAYFGFKKNA--IEHPVRTNQIPRQIPEQSFYTKPLPGIVM 1726
T++ +L +W + PLT IG FG K NA + P RT I R+IP Q +Y + + +
Sbjct: 411 TILLLLTVWLLVGFPLTVIGGIFG-KNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTV 469
Query: 1727 GGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATILLCYFHLCAEDY 1906
GG LPF I ++L++I ++W + Y ++G + +I L YF L EDY
Sbjct: 470 GGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDY 529
Query: 1907 HLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGYT 2038
WRS L+ G T ++ +Y++ Y+ + ++ T+ +FGY+
Sbjct: 530 RWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYS 573
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,252,420
Number of extensions: 1488655
Number of successful extensions: 4162
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4141
Number of HSP's successfully gapped: 5
Length of query: 683
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 575
Effective length of database: 12,373,671
Effective search space: 7114860825
Effective search space used: 7114860825
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013746
(2050 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004791.1| transmembrane 9 superfamily member 2 precursor ... 1184 0.0
Alignment gi|NP_055557.2| transmembrane 9 superfamily member 4 precursor ... 471 e-132
Alignment gi|NP_064508.3| transmembrane 9 superfamily member 3 precursor ... 263 5e-70
Alignment gi|NP_006396.2| transmembrane 9 superfamily member 1 isoform a ... 256 7e-68
Alignment gi|NP_001014842.1| transmembrane 9 superfamily member 1 isoform... 197 3e-50
>ref|NP_004791.1| transmembrane 9 superfamily member 2 precursor [Homo sapiens].
Length = 663
Score = 1184 bits (3062), Expect = 0.0
Identities = 567/595 (95%), Positives = 574/595 (96%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 433
FYLPGLAPVNFCD EKKSDECK EIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN
Sbjct: 36 FYLPGLAPVNFCDEEKKSDECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 95
Query: 434 LGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 613
LGQVLFGERIEPSPYKF FNK+ETC LVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI
Sbjct: 96 LGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 155
Query: 614 VDNMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIK 793
VDNMPVTWCYDVEDGQR+CNPGFPIGCYITDKGHAKDACVI+S+FHERDTFYIFNHVDIK
Sbjct: 156 VDNMPVTWCYDVEDGQRFCNPGFPIGCYITDKGHAKDACVISSDFHERDTFYIFNHVDIK 215
Query: 794 IHYHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSF 973
I+YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSF
Sbjct: 216 IYYHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSF 275
Query: 974 EEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ 1153
EED KIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ
Sbjct: 276 EEDDKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQ 335
Query: 1154 MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN 1333
MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN
Sbjct: 336 MDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPAN 395
Query: 1334 RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI 1513
RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI
Sbjct: 396 RGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLI 455
Query: 1514 LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS 1693
LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS
Sbjct: 456 LWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQS 515
Query: 1694 FYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATIL 1873
FYTKPLPGI+MGGILPFGCIFIQLFFILNSIWSHQMYYMFG TCSEATIL
Sbjct: 516 FYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATIL 575
Query: 1874 LCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGYT 2038
LCYFHLCAEDYH WRSFLTSGFTAVYFLIYA+HYF KLQIT TASTILYFGYT
Sbjct: 576 LCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYT 630
>ref|NP_055557.2| transmembrane 9 superfamily member 4 precursor [Homo sapiens].
Length = 642
Score = 471 bits (1211), Expect = e-132
Identities = 255/610 (41%), Positives = 368/610 (60%), Gaps = 15/610 (2%)
Frame = +2
Query: 254 FYLPGLAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSEN 433
FY+PG+AP+NF + +E+ +L S + LPYEY + FCQ S+ +EN
Sbjct: 24 FYVPGVAPINFHQNDP--------VEIKAVKLTSSRTQLPYEYYSLPFCQPSKITYKAEN 75
Query: 434 LGQVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWI 613
LG+VL G+RI +P++ N E+ C ++C+++ +Q + + + +Y H I
Sbjct: 76 LGEVLRGDRIVNTPFQVLMNSEKKCEVLCSQSNKPVTLTVEQS-RLVAERITEDYYVHLI 134
Query: 614 VDNMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSE---FHERDTFYIFNHV 784
DN+PV ++ Y N DK KD + F + + Y+ NH+
Sbjct: 135 ADNLPVATRLEL-----YSNRDSD------DKKKEKDVQFEHGYRLGFTDVNKIYLHNHL 183
Query: 785 DIKIHYH---VVETGSMGARLVAAKLEPKSFKHTHI---DKPDCSGP------PMDISNK 928
++YH + E R+V ++ P+S + + +K C+ P P +I
Sbjct: 184 SFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKADEKSSCTLPEGTNSSPQEID-- 241
Query: 929 ASGEIKIAYTYSVSFEEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAM 1108
+ E ++ +TYSV +EE I+WASRWD L +M I WFSI+NS+V+V FLSG+++M
Sbjct: 242 PTKENQLYFTYSVHWEESD-IKWASRWDTYL-TMSDVQIHWFSIINSVVVVFFLSGILSM 299
Query: 1109 IMLRTLHKDIARYNQMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTF 1288
I++RTL KDIA YN+ D ED EE GWKLVHGD+FRPP+ M+LS LGSG Q+ M
Sbjct: 300 IIIRTLRKDIANYNKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMIL 359
Query: 1289 VTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFL 1468
+ +F A LG LSP++RGALMT A L++ +G G+ A R Y++ G +WK T+ L
Sbjct: 360 IVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATL 419
Query: 1469 CPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH 1648
PG+VF F++N +WG+ SS A+PF T+VA+L +WF IS+PL ++G YFGF+K ++
Sbjct: 420 YPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDN 479
Query: 1649 PVRTNQIPRQIPEQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXX 1828
PVRTNQIPRQIPEQ +Y GI+M GILPFG +FI+LFFI ++IW +Q YY+FG
Sbjct: 480 PVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFL 539
Query: 1829 XXXXXXXTCSEATILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXT 2008
+CS+ +I++ YF LCAEDY WR+FL SG +A Y L+YAI YF+ KL I
Sbjct: 540 VFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF 599
Query: 2009 ASTILYFGYT 2038
++LYFGYT
Sbjct: 600 IPSLLYFGYT 609
>ref|NP_064508.3| transmembrane 9 superfamily member 3 precursor [Homo sapiens].
Length = 589
Score = 263 bits (672), Expect = 5e-70
Identities = 171/598 (28%), Positives = 283/598 (47%), Gaps = 9/598 (1%)
Frame = +2
Query: 269 LAPVNFCDVEKKSDECKTEIELFVNRLDSVESVLP-YEYTAFDFCQASEGK--RPSENLG 439
L P D + + + K E+ L++N + + Y+Y + FC S+ E LG
Sbjct: 22 LLPRTRADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLG 81
Query: 440 QVLFGERIEPSPYKFKFNKEETCTLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHWIVD 619
+ L G +E S KF + C E DK+K + ++ +Y + +D
Sbjct: 82 EALQGVELEFSGLDIKFKDDVMPATYC------EIDLDKEKRDAFVYAIKNHYWYQMYID 135
Query: 620 NMPVTWCYDVEDGQRYCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIH 799
++P+ W ++ + +Y++
Sbjct: 136 DLPI-WG------------------------------IVGEADENGEDYYLWT------- 157
Query: 800 YHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPPMDISNKASGEIKIAYTYSVSFEE 979
Y +E G G R+V L + K KI +YSV +++
Sbjct: 158 YKKLEIGFNGNRIVDVNLTSEG------------------KVKLVPNTKIQMSYSVKWKK 199
Query: 980 DKKIRWASRWDYILESMPHTH-IQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQM 1156
+++ R+D L+ H I WFSI NS ++V+FL G+V+MI++RTL KD ARY++
Sbjct: 200 SD-VKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKE 258
Query: 1157 DSTEDAQ----EEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLS 1324
+ +D +E+GWK VHGD+FRP ++ S +GSG QI ++ + + A + L
Sbjct: 259 EEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY 318
Query: 1325 PANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIM 1504
RG++++ A+ ++ GY Y GG +W + + +FL P +V F +
Sbjct: 319 -TERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFI 377
Query: 1505 NLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEH-PVRTNQIPRQI 1681
N I +S AIPFGT+VA+ + F + +PL +G G + + P R N +PR I
Sbjct: 378 NFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPI 437
Query: 1682 PEQSFYTKPLPGIVMGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSE 1861
PE+ ++ +P + +GGILPFG IFI+++FI S W++++YY++G
Sbjct: 438 PEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVC 497
Query: 1862 ATILLCYFHLCAEDYHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGY 2035
TI+ YF L AEDY W SFL++ TA+Y +Y+ +Y+ FK ++ T YFGY
Sbjct: 498 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGY 555
>ref|NP_006396.2| transmembrane 9 superfamily member 1 isoform a [Homo sapiens].
Length = 606
Score = 256 bits (653), Expect = 7e-68
Identities = 171/585 (29%), Positives = 287/585 (49%), Gaps = 16/585 (2%)
Frame = +2
Query: 332 LFVNRLDSVESVLP-YEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFKFNKEETC 508
L+VN++ + Y Y C + + S +LG+VL G+R+ S Y+ +F +
Sbjct: 44 LYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEK 103
Query: 509 TLVCTKTYHTEKAED-KQKLEFLKKSMLLNYQHHWIVDNMPVTWCYDVEDGQRYCNPGFP 685
++C + + E +Q +E L Y ++VD++P+ GF
Sbjct: 104 RILCHMQLSSAQVEQLRQAIEEL-------YYFEFVVDDLPIR--------------GF- 141
Query: 686 IGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIHYHVVETGSMGARLVAAKLEPKS 865
+G Y+ + G + I ++ H+D + +H G R++ A + +
Sbjct: 142 VG-YMEESGFLPHSHKIG----------LWTHLDFHLEFH-------GDRIIFANVSVRD 183
Query: 866 FKHTHID--KPDCSGPPMDISNKASGEIKIAYTYSVSFEEDKKIRWASRWDYILESM-PH 1036
K +D +PD + + +TYSV + E R + R P
Sbjct: 184 VKPHSLDGLRPD-------------EFLGLTHTYSVRWSETSVERRSDRRRGDDGGFFPR 230
Query: 1037 T-HIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDA-------QEEFGW 1192
T I W SI+NS+V+V L G VA+I++R L D+ARYN + T A Q + GW
Sbjct: 231 TLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETTSAGSGDDFDQGDNGW 290
Query: 1193 KLVHGDIFR-PPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLW 1369
K++H D+FR PP +G+L +V LG G Q L + + A LG + GA+ + A++L+
Sbjct: 291 KIIHTDVFRFPPYRGLLCAV-LGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLY 349
Query: 1370 VLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPF 1549
L +GYV++ FY+ GGE+W N++LT+ L F + ++N + W GS+ A+P
Sbjct: 350 ALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPA 409
Query: 1550 GTLVAILALWFCISVPLTFIGAYFGFKKNA--IEHPVRTNQIPRQIPEQSFYTKPLPGIV 1723
T++ +L +W + PLT IG FG K NA + P RT I R+IP Q +Y + +
Sbjct: 410 TTILLLLTVWLLVGFPLTVIGGIFG-KNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMT 468
Query: 1724 MGGILPFGCIFIQLFFILNSIWSHQMYYMFGXXXXXXXXXXXTCSEATILLCYFHLCAED 1903
+GG LPF I ++L++I ++W + Y ++G + +I L YF L ED
Sbjct: 469 VGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGED 528
Query: 1904 YHLAWRSFLTSGFTAVYFLIYAIHYFLFKLQITXTASTILYFGYT 2038
Y WRS L+ G T ++ +Y++ Y+ + ++ T+ +FGY+
Sbjct: 529 YRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYS 573
>ref|NP_001014842.1| transmembrane 9 superfamily member 1 isoform b [Homo sapiens].
Length = 489
Score = 197 bits (501), Expect = 3e-50
Identities = 145/487 (29%), Positives = 237/487 (48%), Gaps = 16/487 (3%)
Frame = +2
Query: 332 LFVNRLDSVESVLP-YEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFKFNKEETC 508
L+VN++ + Y Y C + + S +LG+VL G+R+ S Y+ +F +
Sbjct: 44 LYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEK 103
Query: 509 TLVCTKTYHTEKAED-KQKLEFLKKSMLLNYQHHWIVDNMPVTWCYDVEDGQRYCNPGFP 685
++C + + E +Q +E L Y ++VD++P+ GF
Sbjct: 104 RILCHMQLSSAQVEQLRQAIEEL-------YYFEFVVDDLPIR--------------GF- 141
Query: 686 IGCYITDKGHAKDACVINSEFHERDTFYIFNHVDIKIHYHVVETGSMGARLVAAKLEPKS 865
+G Y+ + G + I ++ H+D + +H G R++ A + +
Sbjct: 142 VG-YMEESGFLPHSHKIG----------LWTHLDFHLEFH-------GDRIIFANVSVRD 183
Query: 866 FKHTHID--KPDCSGPPMDISNKASGEIKIAYTYSVSFEEDKKIRWASRWDYILESM-PH 1036
K +D +PD + + +TYSV + E R + R P
Sbjct: 184 VKPHSLDGLRPD-------------EFLGLTHTYSVRWSETSVERRSDRRRGDDGGFFPR 230
Query: 1037 T-HIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDA-------QEEFGW 1192
T I W SI+NS+V+V L G VA+I++R L D+ARYN + T A Q + GW
Sbjct: 231 TLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETTSAGSGDDFDQGDNGW 290
Query: 1193 KLVHGDIFR-PPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLW 1369
K++H D+FR PP +G+L +V LG G Q L + + A LG + GA+ + A++L+
Sbjct: 291 KIIHTDVFRFPPYRGLLCAV-LGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLY 349
Query: 1370 VLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPF 1549
L +GYV++ FY+ GGE+W N++LT+ L F + ++N + W GS+ A+P
Sbjct: 350 ALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPA 409
Query: 1550 GTLVAILALWFCISVPLTFIGAYFGFKKNA--IEHPVRTNQIPRQIPEQSFYTKPLPGIV 1723
T++ +L +W + PLT IG FG K NA + P RT I R+IP Q +Y + +
Sbjct: 410 TTILLLLTVWLLVGFPLTVIGGIFG-KNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMT 468
Query: 1724 MGGILPF 1744
+GG LPF
Sbjct: 469 VGGFLPF 475
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 71,482,664
Number of extensions: 1723435
Number of successful extensions: 4838
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4821
Number of HSP's successfully gapped: 5
Length of query: 683
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 574
Effective length of database: 14,704,088
Effective search space: 8440146512
Effective search space used: 8440146512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013746
(2050 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 264 2e-67
gb|JH118897.1| Sus scrofa unplaced genomic scaffold ChrUScaf3266 260 3e-66
>Sscrofa_Chr11
|| Length = 87690581
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1166 gaggatgcccaggaagaatttggctggaaactagttcatggtgatatattccgtcctcca 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75709665 gaggatgcccaggaagaatttggctggaaactagttcatggtgatatattccgtcctcca 75709724
Query: 1226 agaaaagggatgctgctctcagtctttctgggatcagggacgcagattttaatcatgact 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75709725 agaaaagggatgctgctctcagtctttctgggatcagggacgcagattttaatcatgact 75709784
Query: 1286 tttgtgactctgt 1298
|||||||||||||
Sbjct: 75709785 tttgtgactctgt 75709797
Score = 248 bits (125), Expect = 1e-62
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 740 tcagaattccacgaaagagatacattttacatcttcaaccatgttgacatcaagatacac 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75703480 tcagaattccacgaaagagatacattttacatcttcaaccatgttgacatcaagatacac 75703539
Query: 800 tatcatgttgttgaaactggatccatgggagcaagattagtggctgctaaacttgaacca 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75703540 tatcatgttgttgaaactggatccatgggagcaagattagtggctgctaaacttgaacca 75703599
Query: 860 aaaag 864
|||||
Sbjct: 75703600 aaaag 75703604
Score = 230 bits (116), Expect = 2e-57
Identities = 119/120 (99%)
Strand = Plus / Minus
Query: 1299 tctttgcttgcctgggatttttgtcacctgccaacagaggagcactgatgacttgtgctg 1358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 75714749 tctttgcttgcctgggattgttgtcacctgccaacagaggagcactgatgacttgtgctg 75714690
Query: 1359 tggtcttgtgggtgttgctgggcactcctgcgggctatgtcgctgccagattctataagt 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75714689 tggtcttgtgggtgttgctgggcactcctgcgggctatgtcgctgccagattctataagt 75714630
Score = 222 bits (112), Expect = 6e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1055 agcatcatgaattccctggtcattgtcctcttcttgtctggaatggtggctatgattatg 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75705613 agcatcatgaattccctggtcattgtcctcttcttgtctggaatggtggctatgattatg 75705672
Query: 1115 ctacggacactgcataaagatattgccagatataatcagatggattctacag 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75705673 ctacggacactgcataaagatattgccagatataatcagatggattctacag 75705724
Score = 222 bits (112), Expect = 6e-55
Identities = 144/151 (95%), Gaps = 3/151 (1%)
Strand = Plus / Plus
Query: 1899 aggattatcatttggcatggcgttcattccttaccagtggctttactgcagtttatttct 1958
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75757666 aggattatcattggcaatggcgttcattccttaccagtggctttactgcagtttatttct 75757725
Query: 1959 taatatatgcaatacactactttcttttc-aaactgcaaatcacangaacagcaagtaca 2017
|||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||
Sbjct: 75757726 taatatatgcaatacactac-ttcttttcaaaactgcaaatcacaggaacagcaagtaca 75757784
Query: 2018 attctgtactttggttata-catgataatgg 2047
||||||||||||||||||| |||||||||||
Sbjct: 75757785 attctgtactttggttataccatgataatgg 75757815
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 388 gtttgatttttgccaagcgtcagaaggaaaacgcccatctgaaaatcttggtcaggtatt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75774316 gtttgatttttgccaagcgtcagaaggaaaacgcccatctgaaaatcttggtcaggtatt 75774375
Query: 448 attcggggaaagaattgaaccatcaccatataag 481
||||||||||||||||||||||||||||||||||
Sbjct: 75774376 attcggggaaagaattgaaccatcaccatataag 75774409
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 863 agcttcaaacacacccatatagataaaccagactgctccgggccccccatggatataagt 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75704509 agcttcaaacacacccatatagataaaccagactgctccgggccccccatggatataagt 75704568
Query: 923 aacaaggcttctggggagatcaaaattg 950
||||||||||||||||||||||||||||
Sbjct: 75704569 aacaaggcttctggggagatcaaaattg 75704596
Score = 163 bits (82), Expect = 5e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 975 aggaagataagaagatcagatgggcatctagatgggactacattttggaatctatgcctc 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75704715 aggaagataagaagatcagatgggcatctagatgggactacattttggaatctatgcctc 75704774
Query: 1035 atacccacattcagtggtttag 1056
||||||||||||||||||||||
Sbjct: 75704775 atacccacattcagtggtttag 75704796
Score = 143 bits (72), Expect = 4e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 318 agactgaaatagaactatttgtgaacaggcttgactcagtggaatctgttcttccctatg 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75752305 agactgaaatagaactatttgtgaacaggcttgactcagtggaatctgttcttccctatg 75752364
Query: 378 aatatacagcgt 389
||||||||||||
Sbjct: 75752365 aatatacagcgt 75752376
Score = 143 bits (72), Expect = 4e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 318 agactgaaatagaactatttgtgaacaggcttgactcagtggaatctgttcttccctatg 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75772891 agactgaaatagaactatttgtgaacaggcttgactcagtggaatctgttcttccctatg 75772950
Query: 378 aatatacagcgt 389
||||||||||||
Sbjct: 75772951 aatatacagcgt 75772962
Score = 117 bits (59), Expect = 3e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 1419 cctttggaggtgagaagtggaaaacaaacgttttattgacatcatttctttgtcctggg 1477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75712550 cctttggaggtgagaagtggaaaacaaacgttttattgacatcatttctttgtcctggg 75712492
Score = 67.9 bits (34), Expect = 2e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1299 tctttgcttgcctgggatttttgtcacctgccaa 1332
||||||||||||||||||||||||||||||||||
Sbjct: 75712102 tctttgcttgcctgggatttttgtcacctgccaa 75712135
>gb|JH118897.1| Sus scrofa unplaced genomic scaffold ChrUScaf3266
Length = 30078
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 609 ggattgtggataatatgcctgtaacgtggtgttacgatgttgaagatggtcagaggtact 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27556 ggattgtggataatatgcctgtaacgtggtgttacgatgttgaagatggtcagaggtact 27615
Query: 669 gtaatcctggatttcctattggctgttacattacagataaaggccatgcaaaagatgcct 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616 gtaatcctggatttcctattggctgttacattacagataaaggccatgcaaaagatgcct 27675
Query: 729 gtgttattaat 739
|||||||||||
Sbjct: 27676 gtgttattaat 27686
Score = 218 bits (110), Expect = 9e-54
Identities = 124/131 (94%)
Strand = Plus / Plus
Query: 480 agttcaaatttaataaggaggagacctgtacgcttgtttgtacaaaaacataccacacag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23142 agttcaaatttaataaggaggagacctgtacgcttgtttgtacaaaaacataccacacag 23201
Query: 540 agaaagctgaagacaaacaaaaattagagttcttgnnnnnnngcatgttactgaattatc 599
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 23202 agaaagctgaagacaaacaaaaattagagttcttgaaaaaaagcatgttactgaattatc 23261
Query: 600 aacatcactgg 610
|||||||||||
Sbjct: 23262 aacatcactgg 23272
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 388 gtttgatttttgccaagcgtcagaaggaaaacgcccatctgaaaatcttggtcaggtatt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17436 gtttgatttttgccaagcgtcagaaggaaaacgcccatctgaaaatcttggtcaggtatt 17495
Query: 448 attcggggaaagaattgaaccatcaccatataag 481
||||||||||||||||||||||||||||||||||
Sbjct: 17496 attcggggaaagaattgaaccatcaccatataag 17529
Score = 113 bits (57), Expect = 4e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 82 agcctccccgtccctccttccctcttcacccccgcggctcggctgccctttccccgg 138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8329 agcctccccgtccctccttccctcttcacccccgcggctcggctgccctttccccgg 8385
Score = 91.7 bits (46), Expect = 1e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 253 tttctacctgcccggcctggcgcccgtcaacttctgcgacgtagnnnnnnngagcgacga 312
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8518 tttctacctgcccggcctggcgcccgtcaacttctgcgacgtagaaaaaaagagcgacga 8577
Query: 313 gtgcaag 319
|||||||
Sbjct: 8578 gtgcaag 8584
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 64,039,271
Number of extensions: 442
Number of successful extensions: 442
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 17
Length of query: 2050
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2028
Effective length of database: 2,808,408,574
Effective search space: 5695452588072
Effective search space used: 5695452588072
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)