Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013747
(1089 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230255.1| SH3 domain binding glutamic acid-rich protei... 271 7e-73
Alignment gi|NP_001030517.1| SH3 domain-binding glutamic acid-rich-like p... 155 6e-38
Alignment gi|NP_001077260.1| SH3 domain-binding glutamic acid-rich-like p... 143 2e-34
Alignment gi|NP_001029935.1| SH3 domain-binding glutamic acid-rich-like p... 60 3e-09
>ref|NP_001230255.1| SH3 domain binding glutamic acid-rich protein [Bos taurus].
Length = 208
Score = 271 bits (693), Expect = 7e-73
Identities = 136/159 (85%), Positives = 140/159 (88%)
Frame = +3
Query: 162 MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQ 341
MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNR+WMRENVPGEKKPQ
Sbjct: 1 MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRKWMRENVPGEKKPQ 60
Query: 342 NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSKVTKSPEEASSLPNGDV 521
NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSKVTKSPEEASSLP+G+V
Sbjct: 61 NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSKVTKSPEEASSLPDGEV 120
Query: 522 AGEAQSTTEGAEKPGDXXXXXXXXXXXXXXXDLGGSQEK 638
AGEAQSTTEG EK + DL GSQEK
Sbjct: 121 AGEAQSTTEGTEKAEESGEQEAQKEGDEDAGDLAGSQEK 159
>ref|NP_001030517.1| SH3 domain-binding glutamic acid-rich-like protein [Bos taurus].
Length = 114
Score = 155 bits (392), Expect = 6e-38
Identities = 70/104 (67%), Positives = 88/104 (84%)
Frame = +3
Query: 162 MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQ 341
MVI+V++A+SSGS+AI+KKQQ+V+GFLEANKI F+E DIA +E+NR+WMRENVP +P
Sbjct: 1 MVIRVYIASSSGSMAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPA 60
Query: 342 NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSK 473
G PLPPQIFNE QY GD+D+FF A+E N +Y+FLGL PPGSK
Sbjct: 61 TGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAPPGSK 104
>ref|NP_001077260.1| SH3 domain-binding glutamic acid-rich-like protein 2 [Bos taurus].
Length = 107
Score = 143 bits (361), Expect = 2e-34
Identities = 66/104 (63%), Positives = 84/104 (80%)
Frame = +3
Query: 162 MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQ 341
MVI+VF+A+SSG +AI+KKQQ+VV FLEANKI+F+E DI E+ R+WM +N+P EKKP
Sbjct: 1 MVIRVFLASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNIPPEKKPA 60
Query: 342 NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSK 473
G PLPPQIFN++QYCGD+DSFF +KE N ++SFLGL SK
Sbjct: 61 QGNPLPPQIFNDDQYCGDYDSFFESKESNTVFSFLGLKSQLASK 104
>ref|NP_001029935.1| SH3 domain-binding glutamic acid-rich-like protein 3 [Bos taurus].
Length = 93
Score = 60.5 bits (145), Expect = 3e-09
Identities = 34/96 (35%), Positives = 51/96 (53%)
Frame = +3
Query: 168 IKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQNG 347
++V+ + +GS I+ +Q EV L+ +I ++ DI+ D R MR K
Sbjct: 4 LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKAT--- 60
Query: 348 IPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLA 455
PPQI N +QYCGD++ F A E+N + FL LA
Sbjct: 61 ---PPQIVNGDQYCGDYELFVEAVEQNTLQEFLKLA 93
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,787,359
Number of extensions: 1060412
Number of successful extensions: 3350
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3349
Number of HSP's successfully gapped: 4
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013747
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013747
(1089 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544890.2| PREDICTED: similar to SH3 domain-binding glutam... 227 2e-59
Alignment gi|XP_532212.2| PREDICTED: similar to SH3 domain binding glutam... 146 4e-35
Alignment gi|XP_549106.2| PREDICTED: similar to SH3 domain-binding glutam... 135 9e-32
Alignment gi|XP_854998.1| PREDICTED: similar to SH3 domain binding glutam... 60 3e-09
>ref|XP_544890.2| PREDICTED: similar to SH3 domain-binding glutamic acid-rich protein
(SH3BGR protein) (21-glutamic acid-rich protein)
(21-GARP) [Canis familiaris].
Length = 317
Score = 227 bits (578), Expect = 2e-59
Identities = 119/152 (78%), Positives = 126/152 (82%), Gaps = 1/152 (0%)
Frame = +3
Query: 114 PLAGVCWGEPSFQTLKMVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDED 293
P GV G F T+KMVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKE DIAGDED
Sbjct: 121 PHGGVLGGA-RFPTVKMVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKELDIAGDED 179
Query: 294 NRRWMRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSK 473
NR+WMRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSK
Sbjct: 180 NRKWMRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSK 239
Query: 474 VTKSPEEA-SSLPNGDVAGEAQSTTEGAEKPG 566
T+ EEA + + +A + TE EK G
Sbjct: 240 GTEKTEEAGENEAQKEDNEDAGNLTESQEKNG 271
Score = 49.3 bits (116), Expect = 6e-06
Identities = 29/55 (52%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Frame = +2
Query: 23 GEAGAQTALGPRQPPPGICLCHC------------QDLSSAASPSRGVLGGALFP 151
G GAQTALG RQ PG C C C +D SSAA P GVLGGA FP
Sbjct: 78 GLIGAQTALGGRQLAPGTCTCTCTWHLLPARPGRGRDPSSAAFPHGGVLGGARFP 132
>ref|XP_532212.2| PREDICTED: similar to SH3 domain binding glutamic acid-rich protein
like 2 [Canis familiaris].
Length = 263
Score = 146 bits (368), Expect = 4e-35
Identities = 77/142 (54%), Positives = 97/142 (68%), Gaps = 2/142 (1%)
Frame = +3
Query: 54 PASPHLAFVCVTVRICLAPRPLAGVC-WGEPSFQTL-KMVIKVFVATSSGSIAIRKKQQE 227
PA+ A R+ L PRP WG S +MVI+VF+A+SSG +AI+K+QQ+
Sbjct: 120 PAAAAAAAAAARSRV-LPPRPRQPRARWGRRSVPACERMVIRVFIASSSGFVAIKKQQQD 178
Query: 228 VVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSF 407
VV FLEANKI+F+E DI E+ R+WM +N+P EKKP G PLPPQIFN ++YCGD+DSF
Sbjct: 179 VVRFLEANKIEFEEVDITMSEEQRQWMYKNIPPEKKPAQGNPLPPQIFNGDRYCGDYDSF 238
Query: 408 FSAKEENIIYSFLGLAPPPGSK 473
F AKE N +YSFLGL SK
Sbjct: 239 FEAKESNTVYSFLGLKSRLASK 260
>ref|XP_549106.2| PREDICTED: similar to SH3 domain-binding glutamic acid-rich-like
protein [Canis familiaris].
Length = 104
Score = 135 bits (339), Expect = 9e-32
Identities = 60/89 (67%), Positives = 73/89 (82%)
Frame = +3
Query: 207 IRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQNGIPLPPQIFNEEQY 386
I+KKQQ+V+GFLEANKI F+E DIA +E+NR+WMRENVP +P G PLPPQIFNE QY
Sbjct: 6 IKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENNRPATGYPLPPQIFNESQY 65
Query: 387 CGDFDSFFSAKEENIIYSFLGLAPPPGSK 473
GD+D+FF A+E N +Y+FLGL PPGSK
Sbjct: 66 RGDYDAFFEARENNAVYAFLGLTAPPGSK 94
>ref|XP_854998.1| PREDICTED: similar to SH3 domain binding glutamic acid-rich protein
like 3 [Canis familiaris].
Length = 153
Score = 60.5 bits (145), Expect = 3e-09
Identities = 34/96 (35%), Positives = 51/96 (53%)
Frame = +3
Query: 168 IKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQNG 347
++V+ + +GS I+ +Q EV L+ +I ++ DI+ D R MR K
Sbjct: 64 LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKAT--- 120
Query: 348 IPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLA 455
PPQI N +QYCGD++ F A E+N + FL LA
Sbjct: 121 ---PPQIVNGDQYCGDYELFVEAVEQNTLQEFLKLA 153
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,743,919
Number of extensions: 969138
Number of successful extensions: 3508
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3503
Number of HSP's successfully gapped: 5
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013747
(1089 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360429.1| PREDICTED: SH3 domain-binding glutamic acid-... 135 4e-32
Alignment gi|XP_003121445.2| PREDICTED: hypothetical protein LOC100511848... 92 4e-19
Alignment gi|XP_003360428.1| PREDICTED: hypothetical protein LOC100620814... 50 2e-06
>ref|XP_003360429.1| PREDICTED: SH3 domain-binding glutamic acid-rich-like protein-like
[Sus scrofa].
Length = 145
Score = 135 bits (340), Expect = 4e-32
Identities = 60/89 (67%), Positives = 74/89 (83%)
Frame = +3
Query: 207 IRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQNGIPLPPQIFNEEQY 386
I+KKQQ+V+GFLEANKI F+E DIA +E+NR+WMRENVP ++P G PLPPQIFNE QY
Sbjct: 46 IKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENRRPATGYPLPPQIFNESQY 105
Query: 387 CGDFDSFFSAKEENIIYSFLGLAPPPGSK 473
GD+D+FF A+E N +Y+FLGL PPGSK
Sbjct: 106 RGDYDAFFEARENNAVYAFLGLKAPPGSK 134
>ref|XP_003121445.2| PREDICTED: hypothetical protein LOC100511848 [Sus scrofa].
Length = 189
Score = 92.4 bits (228), Expect = 4e-19
Identities = 41/65 (63%), Positives = 52/65 (80%)
Frame = +3
Query: 198 SIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQNGIPLPPQIFNE 377
S+ I+KKQQ+VV FLEANKI+F+E DI E+ R+WM +N+P EKKP G PLPPQIFN
Sbjct: 70 SLQIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNIPPEKKPAQGNPLPPQIFNG 129
Query: 378 EQYCG 392
++YCG
Sbjct: 130 DRYCG 134
>ref|XP_003360428.1| PREDICTED: hypothetical protein LOC100620814 [Sus scrofa].
Length = 172
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +3
Query: 168 IKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQNG 347
IKV+ + SGS ++ +Q+EV+ L+ KI ++ DI+ + MR V K
Sbjct: 4 IKVYYTSVSGSREVKHRQEEVIRILDTYKIKYELIDISVSLKVLQEMRMKVSTPK----- 58
Query: 348 IPLPPQIFNEEQYCGDF 398
LPPQIFN ++YCG++
Sbjct: 59 -ALPPQIFNGQEYCGNY 74
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,867,827
Number of extensions: 872009
Number of successful extensions: 2250
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2246
Number of HSP's successfully gapped: 3
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013747
(1089 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056640.1| SH3 domain-binding glutamic acid-rich protein [... 253 2e-67
Alignment gi|NP_064373.1| SH3 domain-binding glutamic acid-rich-like prot... 150 1e-36
Alignment gi|NP_766095.1| SH3 domain-binding glutamic acid-rich-like prot... 144 2e-34
Alignment gi|NP_542126.1| SH3 domain-binding glutamic acid-rich-like prot... 56 4e-08
>ref|NP_056640.1| SH3 domain-binding glutamic acid-rich protein [Mus musculus].
Length = 214
Score = 253 bits (645), Expect = 2e-67
Identities = 130/159 (81%), Positives = 133/159 (83%)
Frame = +3
Query: 162 MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQ 341
MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKE DIAGDEDNR+WMRENVPGEKKPQ
Sbjct: 1 MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKELDIAGDEDNRKWMRENVPGEKKPQ 60
Query: 342 NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSKVTKSPEEASSLPNGDV 521
NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSKVTKS EEASSLPNGDV
Sbjct: 61 NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSKVTKS-EEASSLPNGDV 119
Query: 522 AGEAQSTTEGAEKPGDXXXXXXXXXXXXXXXDLGGSQEK 638
AGEA+ EG EK +L SQEK
Sbjct: 120 AGEAEGAAEGTEKAEKSGENEAQKEDSEDTGELSESQEK 158
>ref|NP_064373.1| SH3 domain-binding glutamic acid-rich-like protein [Mus musculus].
Length = 114
Score = 150 bits (380), Expect = 1e-36
Identities = 69/104 (66%), Positives = 87/104 (83%)
Frame = +3
Query: 162 MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQ 341
MVI+V++A+SSGS AI+KKQQ+V+ FLEANKI F+E DIA +E+NR+WMRENVP + +P
Sbjct: 1 MVIRVYIASSSGSTAIKKKQQDVLCFLEANKIGFEEKDIAANEENRKWMRENVPEDSRPS 60
Query: 342 NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSK 473
G PLPPQIFNE QY GD+D+FF A+E N +Y+FLGL PPGSK
Sbjct: 61 TGYPLPPQIFNECQYRGDYDAFFEARENNAVYAFLGLTAPPGSK 104
>ref|NP_766095.1| SH3 domain-binding glutamic acid-rich-like protein 2 [Mus
musculus].
Length = 107
Score = 144 bits (362), Expect = 2e-34
Identities = 65/103 (63%), Positives = 83/103 (80%)
Frame = +3
Query: 162 MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQ 341
MV++VFVA+ SG +AI+KKQQ+VV FLEANKI+F+E DI E+ R+WM +N+P EKKP
Sbjct: 1 MVVRVFVASCSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNIPPEKKPA 60
Query: 342 NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGS 470
G PLPPQIFN ++YCGD+DSFF +KE N ++SFLGL P P S
Sbjct: 61 QGNPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLGLKPRPAS 103
>ref|NP_542126.1| SH3 domain-binding glutamic acid-rich-like protein 3 [Mus
musculus].
Length = 93
Score = 56.2 bits (134), Expect = 4e-08
Identities = 33/96 (34%), Positives = 51/96 (53%)
Frame = +3
Query: 168 IKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQNG 347
++V+ + +GS I+ +Q EV L+ +I ++ DI+ D R MR + G K
Sbjct: 4 LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMR-TLAGNPKAT-- 60
Query: 348 IPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLA 455
PPQI N YCGD++ F A E++ + FL LA
Sbjct: 61 ---PPQIVNGNHYCGDYELFVEAVEQDTLQEFLKLA 93
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,332,510
Number of extensions: 793597
Number of successful extensions: 2915
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2910
Number of HSP's successfully gapped: 4
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013747
(1089 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031367.1| SH3 domain-binding glutamic acid-rich protein i... 234 1e-61
Alignment gi|NP_003013.1| SH3 domain-binding glutamic acid-rich-like prot... 154 1e-37
Alignment gi|NP_113657.1| SH3 domain-binding glutamic acid-rich-like prot... 144 1e-34
Alignment gi|NP_001001713.1| SH3 domain-binding glutamic acid-rich protei... 127 1e-29
Alignment gi|NP_112576.1| SH3 domain-binding glutamic acid-rich-like prot... 60 3e-09
>ref|NP_031367.1| SH3 domain-binding glutamic acid-rich protein isoform a [Homo
sapiens].
Length = 239
Score = 234 bits (597), Expect = 1e-61
Identities = 125/177 (70%), Positives = 135/177 (76%), Gaps = 2/177 (1%)
Frame = +3
Query: 45 PWAPASPHLAFVCVT--VRICLAPRPLAGVCWGEPSFQTLKMVIKVFVATSSGSIAIRKK 218
PWA ASP LA C+ + P GV G F T++MVIKVFVATSSGSIAIRKK
Sbjct: 24 PWAAASPDLALACLCHCQDLSSGAFPNRGVLGGV-LFPTVEMVIKVFVATSSGSIAIRKK 82
Query: 219 QQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQNGIPLPPQIFNEEQYCGDF 398
QQEVVGFLEANKIDFKE DIAGDEDNRRWMRENVPGEKKPQNGIPLPPQIFNEEQYCGDF
Sbjct: 83 QQEVVGFLEANKIDFKELDIAGDEDNRRWMRENVPGEKKPQNGIPLPPQIFNEEQYCGDF 142
Query: 399 DSFFSAKEENIIYSFLGLAPPPGSKVTKSPEEASSLPNGDVAGEAQSTTEGAEKPGD 569
DSFFSAKEENIIYSFLGLAPPP SK ++ EE GE ++ EG+E G+
Sbjct: 143 DSFFSAKEENIIYSFLGLAPPPDSKGSEKAEE---------GGETEAQKEGSEDVGN 190
>ref|NP_003013.1| SH3 domain-binding glutamic acid-rich-like protein [Homo sapiens].
Length = 114
Score = 154 bits (390), Expect = 1e-37
Identities = 70/104 (67%), Positives = 87/104 (83%)
Frame = +3
Query: 162 MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQ 341
MVI+V++A+SSGS AI+KKQQ+V+GFLEANKI F+E DIA +E+NR+WMRENVP +P
Sbjct: 1 MVIRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPA 60
Query: 342 NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSK 473
G PLPPQIFNE QY GD+D+FF A+E N +Y+FLGL PPGSK
Sbjct: 61 TGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAPPGSK 104
>ref|NP_113657.1| SH3 domain-binding glutamic acid-rich-like protein 2 [Homo
sapiens].
Length = 107
Score = 144 bits (363), Expect = 1e-34
Identities = 67/104 (64%), Positives = 84/104 (80%)
Frame = +3
Query: 162 MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQ 341
MVI+VF+A+SSG +AI+KKQQ+VV FLEANKI+F+E DI E+ R+WM +NVP EKKP
Sbjct: 1 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPT 60
Query: 342 NGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSK 473
G PLPPQIFN ++YCGD+DSFF +KE N ++SFLGL P SK
Sbjct: 61 QGNPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLGLKPRLASK 104
>ref|NP_001001713.1| SH3 domain-binding glutamic acid-rich protein isoform b [Homo
sapiens].
Length = 128
Score = 127 bits (320), Expect = 1e-29
Identities = 63/88 (71%), Positives = 69/88 (78%)
Frame = +3
Query: 306 MRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPGSKVTKS 485
MRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPP SK ++
Sbjct: 1 MRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPDSKGSEK 60
Query: 486 PEEASSLPNGDVAGEAQSTTEGAEKPGD 569
EE GE ++ EG+E G+
Sbjct: 61 AEE---------GGETEAQKEGSEDVGN 79
>ref|NP_112576.1| SH3 domain-binding glutamic acid-rich-like protein 3 [Homo
sapiens].
Length = 93
Score = 60.5 bits (145), Expect = 3e-09
Identities = 34/96 (35%), Positives = 51/96 (53%)
Frame = +3
Query: 168 IKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRRWMRENVPGEKKPQNG 347
++V+ + +GS I+ +Q EV L+ +I ++ DI+ D R MR K
Sbjct: 4 LRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKAT--- 60
Query: 348 IPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLA 455
PPQI N +QYCGD++ F A E+N + FL LA
Sbjct: 61 ---PPQIVNGDQYCGDYELFVEAVEQNTLQEFLKLA 93
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,922,198
Number of extensions: 941268
Number of successful extensions: 3499
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3494
Number of HSP's successfully gapped: 5
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013747
(1089 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 406 e-110
>Sscrofa_Chr13
|| Length = 218635234
Score = 406 bits (205), Expect = e-110
Identities = 205/205 (100%)
Strand = Plus / Minus
Query: 2 gagatgcctgggcctctcctgggagaggcaggagctcagacagccctgggcccccgccag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213348193 gagatgcctgggcctctcctgggagaggcaggagctcagacagccctgggcccccgccag 213348134
Query: 62 cccccacctggcatttgtctgtgtcactgtcaggatttgtctagcgccgcgtcccctagc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213348133 cccccacctggcatttgtctgtgtcactgtcaggatttgtctagcgccgcgtcccctagc 213348074
Query: 122 aggggtgtgttggggggagccctctttccagactctcaaaatggttatcaaagtgtttgt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213348073 aggggtgtgttggggggagccctctttccagactctcaaaatggttatcaaagtgtttgt 213348014
Query: 182 tgccacatcttctgggtccatagcg 206
|||||||||||||||||||||||||
Sbjct: 213348013 tgccacatcttctgggtccatagcg 213347989
Score = 379 bits (191), Expect = e-102
Identities = 243/266 (91%)
Strand = Plus / Minus
Query: 811 aggacactcaagtcacgaagcagcatttcaacggtnnnnnnnaaaccccactcaacaaga 870
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 213286540 aggacactcaagtcacgaagcagcatttcaacggtcccccccaaaccccactcaacaaga 213286481
Query: 871 gtgctttggccggaagctggcacatccgggcttcactgcggcatcgcgtatctgacgtga 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213286480 gtgctttggccggaagctggcacatccgggcttcactgcggcatcgcgtatctgacgtga 213286421
Query: 931 cgaggtgtccttgcgaatatctgcttaatcatgtcaacgcgaagtcagatgtgnaagtcc 990
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 213286420 cgaggtgtccttgcgaatatctgcttaatcatgtcaacgcgaagtcagatgtgaagtccc 213286361
Query: 991 acgcctaccttcatgagcctgacatttgtggccttgggctaatcnnnnnnnnctctgcat 1050
||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 213286360 acgcctaccttcatgagcctgacatttgtggccttggcttaatcttttttttctctgcat 213286301
Query: 1051 gaatagacagatcttcntataccctg 1076
|||||||||||||||| ||||||||
Sbjct: 213286300 gaatagacagatcttctaataccctg 213286275
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 206 gattaggaagaaacagcaagaagtagtgggctttttggaagcgaataaaatcgactttaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213337572 gattaggaagaaacagcaagaagtagtgggctttttggaagcgaataaaatcgactttaa 213337513
Query: 266 ggaattcgatattgctggagatgaagacaataggagatggatgagggagaatgttcctgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213337512 ggaattcgatattgctggagatgaagacaataggagatggatgagggagaatgttcctgg 213337453
Query: 326 agagaagaaacctcaaaatgggatccctctgcctccccagatcttcaacgaagaacagta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213337452 agagaagaaacctcaaaatgggatccctctgcctccccagatcttcaacgaagaacagta 213337393
Query: 386 ttgtgggg 393
||||||||
Sbjct: 213337392 ttgtgggg 213337385
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 547 agggagcagagaagcctggagacggtggagaacaggaggctcagaaggaggagagtgaag 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213306848 agggagcagagaagcctggagacggtggagaacaggaggctcagaaggaggagagtgaag 213306789
Query: 607 aggcgggcgacctcggcggatcccaagagaagcat 641
|||||||||||||||||||||||||||||||||||
Sbjct: 213306788 aggcgggcgacctcggcggatcccaagagaagcat 213306754
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 392 ggatttcgactctttcttctctgcaaaagaagagaatattatttattcgttccttggctt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213323646 ggatttcgactctttcttctctgcaaaagaagagaatattatttattcgttccttggctt 213323587
Query: 452 ggctccccctccaggctcaaaggt 475
||||||||||||||||||||||||
Sbjct: 213323586 ggctccccctccaggctcaaaggt 213323563
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 472 aggtgacaaaatcgcccgaggaagcttcatcccttcccaatggtgacgtggctggagagg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213307834 aggtgacaaaatcgcccgaggaagcttcatcccttcccaatggtgacgtggctggagagg 213307775
Query: 532 cgcagagcaccactgagg 549
||||||||||||||||||
Sbjct: 213307774 cgcagagcaccactgagg 213307757
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 773 ttcgtaggccgttgcctgccttgttcttctacctgtccagg 813
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 213290317 ttcgtaggccgttgcctgccttgttcttctacctgtccagg 213290277
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,952,224
Number of extensions: 214
Number of successful extensions: 214
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 7
Length of query: 1089
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1068
Effective length of database: 2,808,413,156
Effective search space: 2999385250608
Effective search space used: 2999385250608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)