Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013749
(956 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543832.2| PREDICTED: similar to adaptin-ear-binding coat-... 365 e-116
Alignment gi|XP_535393.2| PREDICTED: similar to Adaptin ear-binding coat-... 262 4e-70
Alignment gi|XP_864756.1| PREDICTED: similar to Adaptin ear-binding coat-... 211 1e-54
Alignment gi|XP_867045.1| PREDICTED: similar to adaptin-ear-binding coat-... 204 1e-52
Alignment gi|XP_864733.1| PREDICTED: similar to Adaptin ear-binding coat-... 173 2e-43
Alignment gi|XP_850410.1| PREDICTED: similar to Adaptin ear-binding coat-... 163 2e-40
>ref|XP_543832.2| PREDICTED: similar to adaptin-ear-binding coat-associated protein 1
isoform 1 [Canis familiaris].
Length = 275
Score = 365 bits (937), Expect(2) = e-116
Identities = 185/221 (83%), Positives = 185/221 (83%)
Frame = +3
Query: 24 MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL 203
MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL
Sbjct: 1 MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL 60
Query: 204 EDKVSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 383
EDKVSGELFAQAPVEQYPGIAVETV DSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN
Sbjct: 61 EDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120
Query: 384 VSLQDHFKWVXXXXXXXXXXXXMDARPKLDLGFKEGQTIKLSIGNITTKKGGASKPKTAG 563
VSLQDHFKWV MD RPKLDLGFKEGQTIKLSIGNITTKKGG SKPKT G
Sbjct: 121 VSLQDHFKWVKQESEISKESQEMDNRPKLDLGFKEGQTIKLSIGNITTKKGGVSKPKTTG 180
Query: 564 TXXXXXXXXXXXXXXXXXXXSSSVAISNHVTPPPIPKSNHG 686
SSSVAISNHVTPPPIPKSNHG
Sbjct: 181 AGGLSLLPPPPGGKVTIPPPSSSVAISNHVTPPPIPKSNHG 221
Score = 73.9 bits (180), Expect(2) = e-116
Identities = 36/53 (67%), Positives = 37/53 (69%)
Frame = +2
Query: 689 NDADILLDLDXXXXXXXXXXXXXXXXNDLWGDFSTASSSVPNQAPQPSNWVQF 847
+DADILLDLD NDLWGDFSTASSSVPNQAPQPSNWVQF
Sbjct: 223 SDADILLDLDSPAPVPTSAPAPVSASNDLWGDFSTASSSVPNQAPQPSNWVQF 275
>ref|XP_535393.2| PREDICTED: similar to Adaptin ear-binding coat-associated protein 2
(NECAP-2) isoform 2 [Canis familiaris].
Length = 266
Score = 262 bits (669), Expect = 4e-70
Identities = 125/174 (71%), Positives = 144/174 (82%)
Frame = +3
Query: 33 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 212
E EYESVLCVKP+V VYRIPPRA+NRGYRA++W+LDQP W+GRLRIT+KG++AYIKLED+
Sbjct: 3 EGEYESVLCVKPEVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDR 62
Query: 213 VSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSL 392
SGELFAQAPV+Q+PG AVE+V DSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+L
Sbjct: 63 TSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVAL 122
Query: 393 QDHFKWVXXXXXXXXXXXXMDARPKLDLGFKEGQTIKLSIGNITTKKGGASKPK 554
QDHFKWV D PKLDLGFKEGQTIKL+I N+ K+G A P+
Sbjct: 123 QDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGTPR 176
>ref|XP_864756.1| PREDICTED: similar to Adaptin ear-binding coat-associated protein 2
(NECAP-2) isoform 4 [Canis familiaris].
Length = 240
Score = 211 bits (536), Expect = 1e-54
Identities = 100/145 (68%), Positives = 117/145 (80%)
Frame = +3
Query: 120 ASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVADSSRYF 299
A++W+LDQP W+GRLRIT+KG++AYIKLED+ SGELFAQAPV+Q+PG AVE+V DSSRYF
Sbjct: 6 AAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF 65
Query: 300 VIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVXXXXXXXXXXXXMDARPKLDLG 479
VIRI+DG GR AFIGIGF DRGDAFDFNV+LQDHFKWV D PKLDLG
Sbjct: 66 VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLG 125
Query: 480 FKEGQTIKLSIGNITTKKGGASKPK 554
FKEGQTIKL+I N+ K+G A P+
Sbjct: 126 FKEGQTIKLNIANMKKKEGAAGTPR 150
>ref|XP_867045.1| PREDICTED: similar to adaptin-ear-binding coat-associated protein 1
isoform 2 [Canis familiaris].
Length = 102
Score = 204 bits (519), Expect = 1e-52
Identities = 100/101 (99%), Positives = 100/101 (99%)
Frame = +3
Query: 24 MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL 203
MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL
Sbjct: 1 MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL 60
Query: 204 EDKVSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTG 326
EDKVSGELFAQAPVEQYPGIAVETV DSSRYFVIRIQDGTG
Sbjct: 61 EDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG 101
>ref|XP_864733.1| PREDICTED: similar to Adaptin ear-binding coat-associated protein 2
(NECAP-2) isoform 3 [Canis familiaris].
Length = 106
Score = 173 bits (439), Expect = 2e-43
Identities = 86/125 (68%), Positives = 96/125 (76%)
Frame = +3
Query: 33 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 212
E EYESVLCVKP+V VYRIPPRA+NRGYRA++W+LDQP W
Sbjct: 3 EGEYESVLCVKPEVHVYRIPPRATNRGYRAAEWQLDQPSW-------------------- 42
Query: 213 VSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSL 392
SGELFAQAPV+Q+PG AVE+V DSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+L
Sbjct: 43 -SGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVAL 101
Query: 393 QDHFK 407
QDHFK
Sbjct: 102 QDHFK 106
>ref|XP_850410.1| PREDICTED: similar to Adaptin ear-binding coat-associated protein 2
(NECAP-2) [Canis familiaris].
Length = 127
Score = 163 bits (413), Expect = 2e-40
Identities = 81/127 (63%), Positives = 100/127 (78%)
Frame = +3
Query: 33 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 212
E E ESV CV+P+ + +RGYRA++W+LDQP +GRLRIT+KG++A+IKLED
Sbjct: 3 EGESESVPCVRPEGA-------RLHRGYRAAEWQLDQPSRSGRLRITAKGRVAFIKLEDG 55
Query: 213 VSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSL 392
SGELFAQAPV+Q+PG A E+V SSRY VIRI+DG G AF+GIGF DRGDAFDFNV+L
Sbjct: 56 TSGELFAQAPVDQFPGPAAESVTHSSRYSVIRIEDGNGPRAFVGIGFGDRGDAFDFNVAL 115
Query: 393 QDHFKWV 413
QDH +WV
Sbjct: 116 QDHAEWV 122
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,443,613
Number of extensions: 952643
Number of successful extensions: 2455
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2452
Number of HSP's successfully gapped: 7
Length of query: 318
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 215
Effective length of database: 15,440,896
Effective search space: 3319792640
Effective search space used: 3319792640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013749
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013749
(956 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029383.1| adaptin ear-binding coat-associated protein ... 367 e-117
Alignment gi|NP_001015562.1| adaptin ear-binding coat-associated protein ... 260 1e-69
>ref|NP_001029383.1| adaptin ear-binding coat-associated protein 1 [Bos taurus].
Length = 275
Score = 367 bits (941), Expect(2) = e-117
Identities = 184/221 (83%), Positives = 188/221 (85%)
Frame = +3
Query: 24 MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL 203
MA+ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGK+AYIKL
Sbjct: 1 MASELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKL 60
Query: 204 EDKVSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 383
EDKVSGELFAQAPVEQYPGIAVETV DSSRYFVIRIQDGTGRSAFIGIGF+DRGDAFDFN
Sbjct: 61 EDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFN 120
Query: 384 VSLQDHFKWVXXXXXXXXXXXXMDARPKLDLGFKEGQTIKLSIGNITTKKGGASKPKTAG 563
VSLQDHFKWV MD+RPKLDLGFKEGQTIKLSIGNITTKKGG SKPKTAG
Sbjct: 121 VSLQDHFKWVKQESEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITTKKGGTSKPKTAG 180
Query: 564 TXXXXXXXXXXXXXXXXXXXSSSVAISNHVTPPPIPKSNHG 686
T SSSVAISNHVTPPPIPKSNHG
Sbjct: 181 TGGLSLLPPPPGGKVTIPPPSSSVAISNHVTPPPIPKSNHG 221
Score = 73.9 bits (180), Expect(2) = e-117
Identities = 36/53 (67%), Positives = 37/53 (69%)
Frame = +2
Query: 689 NDADILLDLDXXXXXXXXXXXXXXXXNDLWGDFSTASSSVPNQAPQPSNWVQF 847
+DADILLDLD NDLWGDFSTASSSVPNQAPQPSNWVQF
Sbjct: 223 SDADILLDLDSPAPITTPAPAPVSASNDLWGDFSTASSSVPNQAPQPSNWVQF 275
>ref|NP_001015562.1| adaptin ear-binding coat-associated protein 2 [Bos taurus].
Length = 266
Score = 260 bits (665), Expect = 1e-69
Identities = 125/178 (70%), Positives = 143/178 (80%)
Frame = +3
Query: 33 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 212
E EYESVLCVKPDV VYRIPPRA+NRGYRA++W+LDQP W+GRLRIT+KG++AYIKLED+
Sbjct: 3 EAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDR 62
Query: 213 VSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSL 392
SGELFAQAPV+Q+PG AVE+V DSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+L
Sbjct: 63 TSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVAL 122
Query: 393 QDHFKWVXXXXXXXXXXXXMDARPKLDLGFKEGQTIKLSIGNITTKKGGASKPKTAGT 566
QDHFKWV D PKLDL FKEGQTIKL+I ++ K G A P+ T
Sbjct: 123 QDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIASMKKKDGAAGTPRARPT 180
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,689,579
Number of extensions: 912797
Number of successful extensions: 2373
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2370
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 216
Effective length of database: 14,306,398
Effective search space: 3090181968
Effective search space used: 3090181968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013749
(956 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127690.1| PREDICTED: adaptin ear-binding coat-associat... 258 3e-69
Alignment gi|XP_003362173.1| PREDICTED: adaptin ear-binding coat-associat... 74 1e-21
>ref|XP_003127690.1| PREDICTED: adaptin ear-binding coat-associated protein 2-like [Sus
scrofa].
Length = 266
Score = 258 bits (660), Expect = 3e-69
Identities = 123/171 (71%), Positives = 141/171 (82%)
Frame = +3
Query: 42 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSG 221
YESVLCVKP+V VYRIPPRA+NRGYRAS+W+LDQP W+GRLRIT+KG++AYIKLED+ SG
Sbjct: 6 YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSG 65
Query: 222 ELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDH 401
ELFAQAPV+Q+PG AVE+V DSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+LQDH
Sbjct: 66 ELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDH 125
Query: 402 FKWVXXXXXXXXXXXXMDARPKLDLGFKEGQTIKLSIGNITTKKGGASKPK 554
FKWV D PKLDL FKEGQTIKL+I N+ K+G A P+
Sbjct: 126 FKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPR 176
>ref|XP_003362173.1| PREDICTED: adaptin ear-binding coat-associated protein 1-like,
partial [Sus scrofa].
Length = 125
Score = 73.2 bits (178), Expect(2) = 1e-21
Identities = 36/54 (66%), Positives = 36/54 (66%)
Frame = +2
Query: 686 SNDADILLDLDXXXXXXXXXXXXXXXXNDLWGDFSTASSSVPNQAPQPSNWVQF 847
SN DILLDLD NDLWGDFSTASSSVPNQAPQPSNWVQF
Sbjct: 72 SNHGDILLDLDSPAPVTTPAPVPVSASNDLWGDFSTASSSVPNQAPQPSNWVQF 125
Score = 47.8 bits (112), Expect(2) = 1e-21
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +3
Query: 624 SSSVAISNHVTPPPIPKSNHG 686
SSSVAISNHVTPPPIPKSNHG
Sbjct: 55 SSSVAISNHVTPPPIPKSNHG 75
Score = 74.3 bits (181), Expect = 9e-14
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +3
Query: 120 ASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSG 221
ASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSG
Sbjct: 1 ASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSG 34
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,019,108
Number of extensions: 590555
Number of successful extensions: 1478
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1477
Number of HSP's successfully gapped: 4
Length of query: 318
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,879,129
Effective search space: 1944529251
Effective search space used: 1944529251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013749
(956 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080543.2| adaptin ear-binding coat-associated protein 1 [... 364 e-116
Alignment gi|NP_079659.1| adaptin ear-binding coat-associated protein 2 [... 263 1e-70
>ref|NP_080543.2| adaptin ear-binding coat-associated protein 1 [Mus musculus].
Length = 275
Score = 364 bits (934), Expect(2) = e-116
Identities = 184/221 (83%), Positives = 186/221 (84%)
Frame = +3
Query: 24 MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL 203
MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL
Sbjct: 1 MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL 60
Query: 204 EDKVSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 383
EDKVSGELFAQAPVEQYPGIAVETV DSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN
Sbjct: 61 EDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120
Query: 384 VSLQDHFKWVXXXXXXXXXXXXMDARPKLDLGFKEGQTIKLSIGNITTKKGGASKPKTAG 563
VSLQDHFKWV MD RPKLDLGFKEGQTIKLSIGNIT KKGGASKP+ +G
Sbjct: 121 VSLQDHFKWVKQETEISKESQEMDNRPKLDLGFKEGQTIKLSIGNITAKKGGASKPRASG 180
Query: 564 TXXXXXXXXXXXXXXXXXXXSSSVAISNHVTPPPIPKSNHG 686
T SSSVAISNHVTPPPIPKSNHG
Sbjct: 181 TGGLSLLPPPPGGKVTIPPPSSSVAISNHVTPPPIPKSNHG 221
Score = 74.7 bits (182), Expect(2) = e-116
Identities = 36/53 (67%), Positives = 37/53 (69%)
Frame = +2
Query: 689 NDADILLDLDXXXXXXXXXXXXXXXXNDLWGDFSTASSSVPNQAPQPSNWVQF 847
ND+DILLDLD NDLWGDFSTASSSVPNQAPQPSNWVQF
Sbjct: 223 NDSDILLDLDSPAPVSTSAPAPVSTSNDLWGDFSTASSSVPNQAPQPSNWVQF 275
>ref|NP_079659.1| adaptin ear-binding coat-associated protein 2 [Mus musculus].
Length = 266
Score = 263 bits (673), Expect = 1e-70
Identities = 125/178 (70%), Positives = 145/178 (81%)
Frame = +3
Query: 33 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 212
E EYESVLCVKP+V VYRIPPRA+NRGYRAS+W+LDQP W+GRLRIT+KGK+AYIKLED+
Sbjct: 3 ESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDR 62
Query: 213 VSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSL 392
SGELFAQAPV+Q+PG AVE+V DSSRYFVIRI+DG GR AFIG+GF DRGDAFDFNV+L
Sbjct: 63 TSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDFNVAL 122
Query: 393 QDHFKWVXXXXXXXXXXXXMDARPKLDLGFKEGQTIKLSIGNITTKKGGASKPKTAGT 566
QDHFKWV D PKLDLGFK+GQTIK++I N+ K+G A P+ T
Sbjct: 123 QDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKDGQTIKINIANMRKKEGAAGTPRARPT 180
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,020,152
Number of extensions: 784178
Number of successful extensions: 1948
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1945
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 217
Effective length of database: 12,583,923
Effective search space: 2730711291
Effective search space used: 2730711291
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013749
(956 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056324.2| adaptin ear-binding coat-associated protein 1 [... 358 e-114
Alignment gi|NP_060560.1| adaptin ear-binding coat-associated protein 2 i... 261 7e-70
Alignment gi|NP_001138749.1| adaptin ear-binding coat-associated protein ... 261 7e-70
Alignment gi|NP_001138750.1| adaptin ear-binding coat-associated protein ... 210 1e-54
>ref|NP_056324.2| adaptin ear-binding coat-associated protein 1 [Homo sapiens].
Length = 275
Score = 358 bits (919), Expect(2) = e-114
Identities = 182/221 (82%), Positives = 183/221 (82%)
Frame = +3
Query: 24 MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKL 203
MA ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGK AYIKL
Sbjct: 1 MATELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKL 60
Query: 204 EDKVSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 383
EDKVSGELFAQAPVEQYPGIAVETV DSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN
Sbjct: 61 EDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120
Query: 384 VSLQDHFKWVXXXXXXXXXXXXMDARPKLDLGFKEGQTIKLSIGNITTKKGGASKPKTAG 563
VSLQDHFKWV MDARPKLDLGFKEGQTIKL IGNIT KKGGASKP+TA
Sbjct: 121 VSLQDHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGASKPRTAR 180
Query: 564 TXXXXXXXXXXXXXXXXXXXSSSVAISNHVTPPPIPKSNHG 686
SSSVAISNHVTPPPIPKSNHG
Sbjct: 181 GGGLSLLPPPPGGKVTIPPPSSSVAISNHVTPPPIPKSNHG 221
Score = 73.9 bits (180), Expect(2) = e-114
Identities = 36/53 (67%), Positives = 37/53 (69%)
Frame = +2
Query: 689 NDADILLDLDXXXXXXXXXXXXXXXXNDLWGDFSTASSSVPNQAPQPSNWVQF 847
+DADILLDLD NDLWGDFSTASSSVPNQAPQPSNWVQF
Sbjct: 223 SDADILLDLDSPAPVTTPAPTPVSVSNDLWGDFSTASSSVPNQAPQPSNWVQF 275
>ref|NP_060560.1| adaptin ear-binding coat-associated protein 2 isoform 1 [Homo
sapiens].
Length = 263
Score = 261 bits (667), Expect = 7e-70
Identities = 125/174 (71%), Positives = 143/174 (82%)
Frame = +3
Query: 33 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 212
E YESVLCVKPDV VYRIPPRA+NRGYRA++W+LDQP W+GRLRIT+KG++AYIKLED+
Sbjct: 3 ESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDR 62
Query: 213 VSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSL 392
SGELFAQAPV+Q+PG AVE+V DSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+L
Sbjct: 63 TSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVAL 122
Query: 393 QDHFKWVXXXXXXXXXXXXMDARPKLDLGFKEGQTIKLSIGNITTKKGGASKPK 554
QDHFKWV D PKLDLGFKEGQTIKL+I N+ K+G A P+
Sbjct: 123 QDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPR 176
>ref|NP_001138749.1| adaptin ear-binding coat-associated protein 2 isoform 2 [Homo
sapiens].
Length = 273
Score = 261 bits (667), Expect = 7e-70
Identities = 125/174 (71%), Positives = 143/174 (82%)
Frame = +3
Query: 33 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 212
E YESVLCVKPDV VYRIPPRA+NRGYRA++W+LDQP W+GRLRIT+KG++AYIKLED+
Sbjct: 3 ESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDR 62
Query: 213 VSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSL 392
SGELFAQAPV+Q+PG AVE+V DSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+L
Sbjct: 63 TSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVAL 122
Query: 393 QDHFKWVXXXXXXXXXXXXMDARPKLDLGFKEGQTIKLSIGNITTKKGGASKPK 554
QDHFKWV D PKLDLGFKEGQTIKL+I N+ K+G A P+
Sbjct: 123 QDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPR 176
>ref|NP_001138750.1| adaptin ear-binding coat-associated protein 2 isoform 3 [Homo
sapiens].
Length = 237
Score = 210 bits (535), Expect = 1e-54
Identities = 100/145 (68%), Positives = 117/145 (80%)
Frame = +3
Query: 120 ASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVADSSRYF 299
A++W+LDQP W+GRLRIT+KG++AYIKLED+ SGELFAQAPV+Q+PG AVE+V DSSRYF
Sbjct: 6 AAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF 65
Query: 300 VIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVXXXXXXXXXXXXMDARPKLDLG 479
VIRI+DG GR AFIGIGF DRGDAFDFNV+LQDHFKWV D PKLDLG
Sbjct: 66 VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLG 125
Query: 480 FKEGQTIKLSIGNITTKKGGASKPK 554
FKEGQTIKL+I N+ K+G A P+
Sbjct: 126 FKEGQTIKLNIANMKKKEGAAGNPR 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,676,407
Number of extensions: 940707
Number of successful extensions: 2548
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2546
Number of HSP's successfully gapped: 5
Length of query: 318
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 215
Effective length of database: 14,901,872
Effective search space: 3203902480
Effective search space used: 3203902480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013749
(956 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896388.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 343 1e-91
gb|GL896371.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 174 6e-41
Sscrofa_ChrX 129 3e-27
Sscrofa_Chr03 119 3e-24
>gb|GL896388.1| Sus scrofa unplaced genomic scaffold chrU_scaffold733
Length = 6508
Score = 343 bits (173), Expect = 1e-91
Identities = 183/185 (98%), Gaps = 1/185 (0%)
Strand = Plus / Minus
Query: 515 gaacattacaaccaagaaaggaggtgcttctaagcccaagactgcagggactgggggcct 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4959 gaacattacaaccaagaaaggaggtgcttctaagcccaagactgcagggactgggggcct 4900
Query: 575 gagcttactcccaccgccacctggaggcaaggtcacaattcccccgccgtcctcttcagt 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4899 gagcttactcccaccgccacctggaggcaaggtcacaattcccccgccgtcctcttcagt 4840
Query: 635 tgccatcagcaatcatgtcactccaccacccataccgaaatctaatcatgga-gtaatga 693
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 4839 tgccatcagcaatcatgtcactccaccacccataccaaaatctaatcatggaggtaatga 4780
Query: 694 tgcag 698
|||||
Sbjct: 4779 tgcag 4775
Score = 238 bits (120), Expect = 5e-60
Identities = 145/152 (95%), Gaps = 1/152 (0%)
Strand = Plus / Minus
Query: 799 cagctctgttccaaaccaggcaccacagccatccaactgggtccagttctgaacagcact 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1840 cagctctgttccaaaccaggcaccacagccatccaactgggtccagttctgaacagcact 1781
Query: 859 ggcaggatgttaaggacagactttgagaat-aaaatgaccttgaggggcacgatctttga 917
||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct: 1780 ggcaggatgttaaggacagacttgaagaataaaaatgaccttgagggcaacgatctttga 1721
Query: 918 ggggagctaggaacccctttccctcccagaac 949
|||||||||||||||||||||| ||||||||
Sbjct: 1720 ggggagctaggaacccctttcctccccagaac 1689
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 216 tcaggggagctttttgctcaggcaccagtagaacaatatcctggtatcgctgtggagaca 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5832 tcaggggagctttttgctcaggcaccagtagaacaatatcctggtatcgctgtggagaca 5773
Query: 276 gtggcagattccagccgctactttgtaatccggatccaggatggtactgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5772 gtggcagattccagccgctactttgtaatccggatccaggatggtactgg 5723
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 696 cagatatccttttagatttggattctcccgctcctgtcacgacaccagcaccagttccag 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2274 cagatatccttttagatttggattctcccgctcctgtcacgacaccagcaccagttccag 2215
Query: 756 tttctgcaagcaatgacttgtggggagactttagcactgcatccag 801
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2214 tttctgcaagcaatgacttgtggggagactttagcactgcatccag 2169
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 117 agggcatctgactggaaattagatcaacctgattggacaggtcgcctccgaatcacttcc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6113 agggcatctgactggaaattagatcaacctgattggacaggtcgcctccgaatcacttcc 6054
Query: 177 aaagggaagattgcgtatatcaaactcgaggataaagtttcagg 220
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6053 aaagggaagattgcgtatatcaaactcgaggataaagtttcagg 6010
>gb|GL896371.1| Sus scrofa unplaced genomic scaffold chrU_scaffold718
Length = 37244
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 1 gcggcgcggagcgcagagccaagatggcggccgagttggagtatgagtcggtcctgtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 gcggcgcggagcgcagagccaagatggcggccgagttggagtatgagtcggtcctgtgtg 1021
Query: 61 tgaagcccgacgtcagcgtctaccggat 88
||||||||||||||||||||||||||||
Sbjct: 1020 tgaagcccgacgtcagcgtctaccggat 993
>Sscrofa_ChrX
|| Length = 144288218
Score = 129 bits (65), Expect = 3e-27
Identities = 212/261 (81%)
Strand = Plus / Plus
Query: 269 ggagacagtggcagattccagccgctactttgtaatccggatccaggatggtactgggcg 328
|||||||||| ||||||| || ||| ||||||||| || ||||||||| ||||| |
Sbjct: 30816071 ggagacagtgacagattcaagtttctattttgtaatctggttccaggatgacactggaca 30816130
Query: 329 cagtgctttcattggcattggcttcacagatcgaggtgatgccttcgactttaatgtctc 388
|| ||||||| ||||||| |||||| | || ||||||| ||| | ||||||| | |
Sbjct: 30816131 tagggctttcactggcatttgcttcatacctcagggtgatgtctttgcctttaatattcc 30816190
Query: 389 tttacaagaccacttcaagtgggtaaagcaggaatctgagatttccaaagaatctcagga 448
||| ||| | ||||||||| ||||| ||||| ||||||||| | |||||||||||||||
Sbjct: 30816191 tttgcaaaattacttcaagtaggtaaggcaggtatctgagatatacaaagaatctcagga 30816250
Query: 449 aatggacgctcgtcccaagttggatctgggtttcaaggaaggacagaccatcaagttgag 508
||||| | || |||||||||| |||||| ||||||||| |||||| ||||||||| ||
Sbjct: 30816251 aatggccattcatcccaagttgactctgggcttcaaggaaagacagatcatcaagttaag 30816310
Query: 509 tattgggaacattacaaccaa 529
|| || ||||||||||||||
Sbjct: 30816311 taatgtaaacattacaaccaa 30816331
Score = 89.7 bits (45), Expect = 3e-15
Identities = 102/119 (85%), Gaps = 4/119 (3%)
Strand = Plus / Plus
Query: 744 caccagttccagtttctgcaagcaatgacttgtggggagactttagcactgcatccagct 803
|||||| |||||| |||| |||||||||||| |||||||||||||||||| |||||||
Sbjct: 30816525 caccagctccagtctctg--agcaatgacttg--gggagactttagcactgcttccagct 30816580
Query: 804 ctgttccaaaccaggcaccacagccatccaactgggtccagttctgaacagcactggca 862
||||||||||| |||||| |||||| ||| || ||||| |||||| ||||||||||
Sbjct: 30816581 ctgttccaaacatggcaccccagccacacaaatgagtccaagtctgaatagcactggca 30816639
>Sscrofa_Chr03
|| Length = 144787322
Score = 119 bits (60), Expect = 3e-24
Identities = 90/99 (90%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 764 agcaatgacttgtggggagactttagcactgcatccagctctgttccaaaccaggcacca 823
|||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 71741435 agcaatgacttg--gtgagactttagcactgcatccagctctgttccaaacctggcaccc 71741492
Query: 824 cagccatccaactgggtccagttctgaacagcactggca 862
||||||| |||||| |||||| |||||| ||||||||||
Sbjct: 71741493 cagccatacaactgagtccaggtctgaatagcactggca 71741531
Score = 83.8 bits (42), Expect = 2e-13
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 403 tcaagtgggtaaagcaggaatctgagatttccaaagaatctcaggaaatggacgctcgtc 462
|||||||||||| ||||| ||||||||| | |||||||||||||||||||| | || ||
Sbjct: 71741082 tcaagtgggtaaggcaggtatctgagatatacaaagaatctcaggaaatggccattcatc 71741141
Query: 463 ccaagttggatctgggtttcaaggaa 488
|||||||| |||||| |||||||||
Sbjct: 71741142 ccaagttgactctgggcttcaaggaa 71741167
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,625,420
Number of extensions: 122
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 10
Length of query: 956
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 935
Effective length of database: 2,808,413,156
Effective search space: 2625866300860
Effective search space used: 2625866300860
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)