Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013750
(1692 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013873.1| natural resistance-associated macrophage pro... 501 e-142
Alignment gi|XP_543669.2| PREDICTED: similar to solute carrier family 11 ... 401 e-112
>ref|NP_001013873.1| natural resistance-associated macrophage protein 1 [Canis lupus
familiaris].
Length = 547
Score = 501 bits (1291), Expect = e-142
Identities = 254/315 (80%), Positives = 269/315 (85%)
Frame = +3
Query: 156 MTGDTGPPKQSRTQYXXXXXXXXXXXXXXXXXXTYLSEKIPIPNAEPGTFSLRKLWAFTG 335
MTGD P SR Y TYLSEKIPIP+ EPGTFSLRKLWAFTG
Sbjct: 1 MTGDKDPQSVSRPNYGSISHPPSSEPQQEPLRTTYLSEKIPIPDTEPGTFSLRKLWAFTG 60
Query: 336 PGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE 515
PGFLMSIA+LDPGNI+SDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE
Sbjct: 61 PGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE 120
Query: 516 ICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGTAIAFNLLSAGGIPLWGGVLITVVDTFF 695
ICHLYYPKVPRTLLWLT+ELAIVGSDMQEVIGTAIAF+LLSAG IPLWGGVLIT+VDTFF
Sbjct: 121 ICHLYYPKVPRTLLWLTIELAIVGSDMQEVIGTAIAFSLLSAGRIPLWGGVLITIVDTFF 180
Query: 696 FLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVVARPAQGALLRGLFLPSCSGCGQPELLQ 875
FL+LDNYGLRKLE GYEYVVARPAQ ALL+GL LPSC GCG+PELLQ
Sbjct: 181 FLFLDNYGLRKLEAFFGILITIMALTFGYEYVVARPAQVALLQGLLLPSCPGCGRPELLQ 240
Query: 876 AVGIVGAIIMPHNIYLHSALVKSREVDRTRREDIREANMYFLIESTIALFVSFFINLFVM 1055
AVGIVGAIIMPHNIYLHSALVKSRE+DR+RR DIREANMYFLIE++IAL VSFFINLFV+
Sbjct: 241 AVGIVGAIIMPHNIYLHSALVKSREIDRSRRPDIREANMYFLIEASIALSVSFFINLFVV 300
Query: 1056 AVFGQAFYQQTNQAA 1100
AVFGQAFYQQTN+AA
Sbjct: 301 AVFGQAFYQQTNEAA 315
>ref|XP_543669.2| PREDICTED: similar to solute carrier family 11 (proton-coupled
divalent metal ion transporters), member 2 [Canis
familiaris].
Length = 756
Score = 401 bits (1031), Expect = e-112
Identities = 195/296 (65%), Positives = 234/296 (79%), Gaps = 5/296 (1%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY EKI IP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLWVL
Sbjct: 244 TYFDEKIAIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVL 303
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 304 LLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQEVIGS 363
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G +PLWGGVLIT+ DTF FL+LD YGLRKLE GYEYV
Sbjct: 364 AIAINLLSVGRVPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 423
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+FLPSCSGC P++ QAVGIVGA+IMPHN+YLHSALVKSR+++R +++
Sbjct: 424 VKPSQSQVLKGMFLPSCSGCHTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQINRANKQE 483
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV-----RHTPYTHV 1127
+REAN YF IES IALFVSF IN+FV++VF +AF+++TN V +P++H+
Sbjct: 484 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFEKTNDQVVAVCRNSSSPHSHL 539
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 72,656,230
Number of extensions: 2339748
Number of successful extensions: 11230
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11145
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 456
Effective length of database: 15,274,216
Effective search space: 6965042496
Effective search space used: 6965042496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013750
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013750
(1692 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777077.1| natural resistance-associated macrophage protei... 511 e-144
Alignment gi|NP_001094573.1| natural resistance-associated macrophage pro... 403 e-112
Alignment gi|XP_587893.4| PREDICTED: solute carrier family 11 member 2-li... 377 e-104
Alignment gi|XP_002687344.1| PREDICTED: solute carrier family 11 member 2... 377 e-104
Alignment gi|NP_001039586.1| solute carrier family 11 (proton-coupled div... 298 1e-80
>ref|NP_777077.1| natural resistance-associated macrophage protein 1 [Bos taurus].
Length = 548
Score = 511 bits (1315), Expect = e-144
Identities = 257/315 (81%), Positives = 273/315 (86%)
Frame = +3
Query: 156 MTGDTGPPKQSRTQYXXXXXXXXXXXXXXXXXXTYLSEKIPIPNAEPGTFSLRKLWAFTG 335
M+GDTGPPKQ T+Y TYLSEKIPIP+ E GTFSLRKLWAFTG
Sbjct: 1 MSGDTGPPKQGGTRYGSISSPPSPEPQQAPPGGTYLSEKIPIPDTESGTFSLRKLWAFTG 60
Query: 336 PGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE 515
PGFLMSIA+LDPGNI+SDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE
Sbjct: 61 PGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE 120
Query: 516 ICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGTAIAFNLLSAGGIPLWGGVLITVVDTFF 695
+CHLYYPKVPR LLWLT+ELAIVGSDMQEVIGTAIAF+LLSAG IPLWGGVLITVVDTFF
Sbjct: 121 VCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAIAFSLLSAGRIPLWGGVLITVVDTFF 180
Query: 696 FLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVVARPAQGALLRGLFLPSCSGCGQPELLQ 875
FL+LDNYGLRKLE GYEYVVA+PAQGALL+GLFLPSC GCGQPELLQ
Sbjct: 181 FLFLDNYGLRKLEAFFGFLITIMALTFGYEYVVAQPAQGALLQGLFLPSCPGCGQPELLQ 240
Query: 876 AVGIVGAIIMPHNIYLHSALVKSREVDRTRREDIREANMYFLIESTIALFVSFFINLFVM 1055
AVGI+GAIIMPHNIYLHS+LVKSREVDR+RR DIREANMYFLIE+TIAL VSF INLFVM
Sbjct: 241 AVGIIGAIIMPHNIYLHSSLVKSREVDRSRRADIREANMYFLIEATIALSVSFLINLFVM 300
Query: 1056 AVFGQAFYQQTNQAA 1100
AVFGQAFY+QTNQAA
Sbjct: 301 AVFGQAFYKQTNQAA 315
>ref|NP_001094573.1| natural resistance-associated macrophage protein 2 [Bos taurus].
Length = 562
Score = 403 bits (1035), Expect = e-112
Identities = 198/296 (66%), Positives = 234/296 (79%), Gaps = 5/296 (1%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY EKI IP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLWVL
Sbjct: 50 TYFDEKIAIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVL 109
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YP+VPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 110 LLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPRVPRIILWLMVELAIIGSDMQEVIGS 169
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DTF FL+LD YGLRKLE GYEYV
Sbjct: 170 AIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 229
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+FLPSCSGC P++ QAVGIVGA+IMPHN+YLHSALVKSR+VDR +++
Sbjct: 230 VKPSQTQVLKGMFLPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVDRANKQE 289
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV-----RHTPYTHV 1127
+REAN YF IES IALFVSF IN+FV++VF +AF+ +TN+ V +P+TH+
Sbjct: 290 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVVAVCTNSSSPHTHL 345
>ref|XP_587893.4| PREDICTED: solute carrier family 11 member 2-like [Bos taurus].
Length = 588
Score = 377 bits (969), Expect = e-104
Identities = 182/283 (64%), Positives = 223/283 (78%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY EKI +P + FS RKLWAFTGPGFLMSI +DPGNI+ DLQ+GA+AGFKLLWV+
Sbjct: 78 TYFDEKIAVPEEKHSCFSFRKLWAFTGPGFLMSI--VDPGNIECDLQSGALAGFKLLWVV 135
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L++T++GLL Q LAARLGVVTG L E+CH YP+VPR LLWL +ELAI+G DMQEVIG+
Sbjct: 136 LFSTIMGLLLQSLAARLGVVTGLHLAEVCHRQYPRVPRILLWLMVELAIIGVDMQEVIGS 195
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DT FL+LD YGLRKLE GYEYV
Sbjct: 196 AIAINLLSVGRIPLWGGVLITIADTLIFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 255
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+FLPSCSGC P+++QAV IVGA+I PHNIYLHSALVKSR+VDR +++
Sbjct: 256 VKPSQTQVLQGMFLPSCSGCRTPQIIQAVAIVGAVITPHNIYLHSALVKSRQVDRANKQE 315
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF I+S IALFVSF IN+FV++VF +AF+++TN+ V
Sbjct: 316 VREANKYFFIDSCIALFVSFIINIFVISVFAEAFFEKTNKQVV 358
>ref|XP_002687344.1| PREDICTED: solute carrier family 11 member 2-like [Bos taurus].
Length = 588
Score = 377 bits (967), Expect = e-104
Identities = 181/283 (63%), Positives = 223/283 (78%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY EKI +P + FS RKLWAFTGPGFLMSI +DPGNI+ DLQ+GA+AGFKLLWV+
Sbjct: 78 TYFDEKIAVPEEKHSCFSFRKLWAFTGPGFLMSI--VDPGNIECDLQSGALAGFKLLWVV 135
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L++T++G+L Q LAARLGVVTG L E+CH YP+VPR LLWL +ELAI+G DMQEVIG+
Sbjct: 136 LFSTIMGMLLQSLAARLGVVTGLHLAEVCHRQYPRVPRILLWLMVELAIIGVDMQEVIGS 195
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DT FL+LD YGLRKLE GYEYV
Sbjct: 196 AIAINLLSVGRIPLWGGVLITIADTLIFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 255
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+FLPSCSGC P+++QAV IVGA+I PHNIYLHSALVKSR+VDR +++
Sbjct: 256 VKPSQTQVLQGMFLPSCSGCRTPQIIQAVAIVGAVITPHNIYLHSALVKSRQVDRANKQE 315
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF I+S IALFVSF IN+FV++VF +AF+++TN+ V
Sbjct: 316 VREANKYFFIDSCIALFVSFIINIFVISVFAEAFFEKTNKQVV 358
>ref|NP_001039586.1| solute carrier family 11 (proton-coupled divalent metal ion
transporters), member 2 [Bos taurus].
Length = 536
Score = 298 bits (762), Expect = 1e-80
Identities = 157/296 (53%), Positives = 193/296 (65%), Gaps = 5/296 (1%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TYL E + + FS RKLW FTGPG LMS+ +DPGNI+ DLQ+GA+AGFK
Sbjct: 82 TYLDENNAVLEEKHSCFSFRKLWVFTGPGLLMSV--VDPGNIECDLQSGALAGFK----- 134
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
VPR LLWL +ELAI+G DMQEVIG+
Sbjct: 135 -----------------------------------VPRILLWLMVELAIIGVDMQEVIGS 159
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLSAG IPLWGGVLIT+ DTF FL+LDNYGLRKLE GYEYV
Sbjct: 160 AIAINLLSAGRIPLWGGVLITIADTFAFLFLDNYGLRKLEAFFGFIFTVMALTFGYEYVT 219
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+FLPSCSGC P+++QAV IVGAIIMPHNIYLHSALVKSR +DR +R++
Sbjct: 220 VKPSQTQVLKGMFLPSCSGCRTPQIMQAVAIVGAIIMPHNIYLHSALVKSRHIDRAKRQE 279
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV-----RHTPYTHV 1127
+REAN YF I+ IALFVSF IN V++VF +AF+++TN+ V +P+TH+
Sbjct: 280 VREANKYFFIDCCIALFVSFIINTCVISVFAEAFFEKTNEQVVAVCKNSSSPHTHL 335
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,516,587
Number of extensions: 2402579
Number of successful extensions: 10942
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10855
Number of HSP's successfully gapped: 6
Length of query: 564
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 457
Effective length of database: 14,140,958
Effective search space: 6462417806
Effective search space used: 6462417806
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013750
(1692 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998986.1| natural resistance-associated macrophage protei... 555 e-158
Alignment gi|NP_001121912.1| natural resistance-associated macrophage pro... 404 e-113
>ref|NP_998986.1| natural resistance-associated macrophage protein 1 [Sus scrofa].
Length = 538
Score = 555 bits (1430), Expect = e-158
Identities = 282/315 (89%), Positives = 283/315 (89%)
Frame = +3
Query: 156 MTGDTGPPKQSRTQYXXXXXXXXXXXXXXXXXXTYLSEKIPIPNAEPGTFSLRKLWAFTG 335
M+GDTGPPKQSRTQY TYLSEKIPIPNAEPGTFSLRKLWAFTG
Sbjct: 1 MSGDTGPPKQSRTQYGSISSSPSPGPPQVPPGGTYLSEKIPIPNAEPGTFSLRKLWAFTG 60
Query: 336 PGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE 515
PGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE
Sbjct: 61 PGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE 120
Query: 516 ICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGTAIAFNLLSAGGIPLWGGVLITVVDTFF 695
ICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGTAIAFNLLSAGGIPLWGGVLITVVDTFF
Sbjct: 121 ICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGTAIAFNLLSAGGIPLWGGVLITVVDTFF 180
Query: 696 FLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVVARPAQGALLRGLFLPSCSGCGQPELLQ 875
FLYLDNYGLRKLE GYEYVVARPAQGALLRGLFLPSCSGCGQPELLQ
Sbjct: 181 FLYLDNYGLRKLEAFFAFLIAIMAFTFGYEYVVARPAQGALLRGLFLPSCSGCGQPELLQ 240
Query: 876 AVGIVGAIIMPHNIYLHSALVKSREVDRTRREDIREANMYFLIESTIALFVSFFINLFVM 1055
AVGIVGAIIMPHNIYLHSALVKSREVDRTRREDIREANMYFLIESTIALFVSFFINLFVM
Sbjct: 241 AVGIVGAIIMPHNIYLHSALVKSREVDRTRREDIREANMYFLIESTIALFVSFFINLFVM 300
Query: 1056 AVFGQAFYQQTNQAA 1100
AVFGQAFYQQTNQAA
Sbjct: 301 AVFGQAFYQQTNQAA 315
>ref|NP_001121912.1| natural resistance-associated macrophage protein 2 [Sus scrofa].
Length = 562
Score = 404 bits (1039), Expect = e-113
Identities = 196/283 (69%), Positives = 229/283 (80%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY EKI IP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLW+L
Sbjct: 50 TYFDEKIAIPEEEHSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWIL 109
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 110 LLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQEVIGS 169
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DTF FL+LD YGLRKLE GYEYV
Sbjct: 170 AIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITVMALTFGYEYVT 229
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+FLPSCSGC P++ QAVGIVGA+IMPHN+YLHSALVKSR+V+R +E+
Sbjct: 230 VKPSQSQVLKGMFLPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRANKEE 289
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF IES IALFVSF IN+FV++VF +AF+++TNQ V
Sbjct: 290 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFEKTNQQVV 332
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,668,474
Number of extensions: 1740140
Number of successful extensions: 7037
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6987
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 460
Effective length of database: 8,754,644
Effective search space: 4027136240
Effective search space used: 4027136240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013750
(1692 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038640.2| natural resistance-associated macrophage protei... 494 e-140
Alignment gi|NP_001139633.1| natural resistance-associated macrophage pro... 403 e-112
Alignment gi|NP_032758.2| natural resistance-associated macrophage protei... 403 e-112
>ref|NP_038640.2| natural resistance-associated macrophage protein 1 [Mus musculus].
Length = 548
Score = 494 bits (1273), Expect = e-140
Identities = 249/315 (79%), Positives = 265/315 (84%)
Frame = +3
Query: 156 MTGDTGPPKQSRTQYXXXXXXXXXXXXXXXXXXTYLSEKIPIPNAEPGTFSLRKLWAFTG 335
M D PP+ SR Y TYLSEKIPIP+A+ GTFSLRKLWAFTG
Sbjct: 1 MISDKSPPRLSRPSYGSISSLPGPAPQPAPCRETYLSEKIPIPSADQGTFSLRKLWAFTG 60
Query: 336 PGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE 515
PGFLMSIA+LDPGNI+SDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE
Sbjct: 61 PGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGE 120
Query: 516 ICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGTAIAFNLLSAGGIPLWGGVLITVVDTFF 695
+CHLYYPKVPR LLWLT+ELAIVGSDMQEVIGTAI+FNLLSAG IPLW GVLIT+VDTFF
Sbjct: 121 VCHLYYPKVPRILLWLTIELAIVGSDMQEVIGTAISFNLLSAGRIPLWDGVLITIVDTFF 180
Query: 696 FLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVVARPAQGALLRGLFLPSCSGCGQPELLQ 875
FL+LDNYGLRKLE GYEYVVA P+QGALL+GL LP+C GCGQPELLQ
Sbjct: 181 FLFLDNYGLRKLEAFFGLLITIMALTFGYEYVVAHPSQGALLKGLVLPTCPGCGQPELLQ 240
Query: 876 AVGIVGAIIMPHNIYLHSALVKSREVDRTRREDIREANMYFLIESTIALFVSFFINLFVM 1055
AVGIVGAIIMPHNIYLHSALVKSREVDRTRR D+REANMYFLIE+TIAL VSF INLFVM
Sbjct: 241 AVGIVGAIIMPHNIYLHSALVKSREVDRTRRVDVREANMYFLIEATIALSVSFIINLFVM 300
Query: 1056 AVFGQAFYQQTNQAA 1100
AVFGQAFYQQTN+ A
Sbjct: 301 AVFGQAFYQQTNEEA 315
>ref|NP_001139633.1| natural resistance-associated macrophage protein 2 isoform 1 [Mus
musculus].
Length = 561
Score = 403 bits (1036), Expect = e-112
Identities = 194/283 (68%), Positives = 230/283 (81%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY EKIPIP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLWVL
Sbjct: 49 TYFDEKIPIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVL 108
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 109 LLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQEVIGS 168
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLSAG +PLWGGVLIT+ DTF FL+LD YGLRKLE GYEY+
Sbjct: 169 AIAINLLSAGRVPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYIT 228
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +LRG+F+PSC GC P++ QAVGIVGA+IMPHN+YLHSALVKSR+V+R +++
Sbjct: 229 VKPSQSQVLRGMFVPSCPGCRTPQVEQAVGIVGAVIMPHNMYLHSALVKSRQVNRANKQE 288
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF IES IALFVSF IN+FV++VF +AF+++TN+ V
Sbjct: 289 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFEKTNKQVV 331
>ref|NP_032758.2| natural resistance-associated macrophage protein 2 isoform 2 [Mus
musculus].
Length = 568
Score = 403 bits (1036), Expect = e-112
Identities = 194/283 (68%), Positives = 230/283 (81%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY EKIPIP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLWVL
Sbjct: 49 TYFDEKIPIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWVL 108
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 109 LLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQEVIGS 168
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLSAG +PLWGGVLIT+ DTF FL+LD YGLRKLE GYEY+
Sbjct: 169 AIAINLLSAGRVPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYIT 228
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +LRG+F+PSC GC P++ QAVGIVGA+IMPHN+YLHSALVKSR+V+R +++
Sbjct: 229 VKPSQSQVLRGMFVPSCPGCRTPQVEQAVGIVGAVIMPHNMYLHSALVKSRQVNRANKQE 288
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF IES IALFVSF IN+FV++VF +AF+++TN+ V
Sbjct: 289 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFEKTNKQVV 331
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,075,517
Number of extensions: 1890042
Number of successful extensions: 8740
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8681
Number of HSP's successfully gapped: 3
Length of query: 564
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 457
Effective length of database: 12,403,707
Effective search space: 5668494099
Effective search space used: 5668494099
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013750
(1692 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000569.3| natural resistance-associated macrophage protei... 501 e-142
Alignment gi|NP_000608.1| natural resistance-associated macrophage protei... 399 e-111
Alignment gi|NP_001167601.1| natural resistance-associated macrophage pro... 399 e-111
Alignment gi|NP_001167600.1| natural resistance-associated macrophage pro... 399 e-111
Alignment gi|NP_001167599.1| natural resistance-associated macrophage pro... 399 e-111
Alignment gi|NP_001167598.1| natural resistance-associated macrophage pro... 399 e-111
Alignment gi|NP_001167597.1| natural resistance-associated macrophage pro... 399 e-111
Alignment gi|NP_001167596.1| natural resistance-associated macrophage pro... 399 e-111
>ref|NP_000569.3| natural resistance-associated macrophage protein 1 [Homo sapiens].
Length = 550
Score = 501 bits (1291), Expect = e-142
Identities = 255/318 (80%), Positives = 269/318 (84%), Gaps = 3/318 (0%)
Frame = +3
Query: 156 MTGDTGPPKQSRTQYXXXXXXXXXXXXXXXXXX---TYLSEKIPIPNAEPGTFSLRKLWA 326
MTGD GP + S + Y TYLSEKIPIP+ +PGTFSLRKLWA
Sbjct: 1 MTGDKGPQRLSGSSYGSISSPTSPTSPGPQQAPPRETYLSEKIPIPDTKPGTFSLRKLWA 60
Query: 327 FTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKD 506
FTGPGFLMSIA+LDPGNI+SDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKD
Sbjct: 61 FTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKD 120
Query: 507 LGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGTAIAFNLLSAGGIPLWGGVLITVVD 686
LGE+CHLYYPKVPRT+LWLT+ELAIVGSDMQEVIGTAIAFNLLSAG IPLWGGVLIT+VD
Sbjct: 121 LGEVCHLYYPKVPRTVLWLTIELAIVGSDMQEVIGTAIAFNLLSAGRIPLWGGVLITIVD 180
Query: 687 TFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVVARPAQGALLRGLFLPSCSGCGQPE 866
TFFFL+LDNYGLRKLE GYEYVVARP QGALLRGLFLPSC GCG PE
Sbjct: 181 TFFFLFLDNYGLRKLEAFFGLLITIMALTFGYEYVVARPEQGALLRGLFLPSCPGCGHPE 240
Query: 867 LLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRREDIREANMYFLIESTIALFVSFFINL 1046
LLQAVGIVGAIIMPHNIYLHSALVKSRE+DR RR DIREANMYFLIE+TIAL VSF INL
Sbjct: 241 LLQAVGIVGAIIMPHNIYLHSALVKSREIDRARRADIREANMYFLIEATIALSVSFIINL 300
Query: 1047 FVMAVFGQAFYQQTNQAA 1100
FVMAVFGQAFYQ+TNQAA
Sbjct: 301 FVMAVFGQAFYQKTNQAA 318
>ref|NP_000608.1| natural resistance-associated macrophage protein 2 isoform 3 [Homo
sapiens].
Length = 561
Score = 399 bits (1025), Expect = e-111
Identities = 193/283 (68%), Positives = 229/283 (80%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY +EKI IP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLW+L
Sbjct: 49 TYFNEKISIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWIL 108
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 109 LLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGS 168
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DTF FL+LD YGLRKLE GYEYV
Sbjct: 169 AIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 228
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+F+PSCSGC P++ QAVGIVGA+IMPHN+YLHSALVKSR+V+R +++
Sbjct: 229 VKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQE 288
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF IES IALFVSF IN+FV++VF +AF+ +TN+ V
Sbjct: 289 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVV 331
>ref|NP_001167601.1| natural resistance-associated macrophage protein 2 isoform 4 [Homo
sapiens].
Length = 557
Score = 399 bits (1025), Expect = e-111
Identities = 193/283 (68%), Positives = 229/283 (80%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY +EKI IP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLW+L
Sbjct: 45 TYFNEKISIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWIL 104
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 105 LLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGS 164
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DTF FL+LD YGLRKLE GYEYV
Sbjct: 165 AIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 224
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+F+PSCSGC P++ QAVGIVGA+IMPHN+YLHSALVKSR+V+R +++
Sbjct: 225 VKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQE 284
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF IES IALFVSF IN+FV++VF +AF+ +TN+ V
Sbjct: 285 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVV 327
>ref|NP_001167600.1| natural resistance-associated macrophage protein 2 isoform 3 [Homo
sapiens].
Length = 561
Score = 399 bits (1025), Expect = e-111
Identities = 193/283 (68%), Positives = 229/283 (80%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY +EKI IP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLW+L
Sbjct: 49 TYFNEKISIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWIL 108
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 109 LLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGS 168
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DTF FL+LD YGLRKLE GYEYV
Sbjct: 169 AIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 228
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+F+PSCSGC P++ QAVGIVGA+IMPHN+YLHSALVKSR+V+R +++
Sbjct: 229 VKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQE 288
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF IES IALFVSF IN+FV++VF +AF+ +TN+ V
Sbjct: 289 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVV 331
>ref|NP_001167599.1| natural resistance-associated macrophage protein 2 isoform 3 [Homo
sapiens].
Length = 561
Score = 399 bits (1025), Expect = e-111
Identities = 193/283 (68%), Positives = 229/283 (80%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY +EKI IP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLW+L
Sbjct: 49 TYFNEKISIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWIL 108
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 109 LLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGS 168
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DTF FL+LD YGLRKLE GYEYV
Sbjct: 169 AIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 228
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+F+PSCSGC P++ QAVGIVGA+IMPHN+YLHSALVKSR+V+R +++
Sbjct: 229 VKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQE 288
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF IES IALFVSF IN+FV++VF +AF+ +TN+ V
Sbjct: 289 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVV 331
>ref|NP_001167598.1| natural resistance-associated macrophage protein 2 isoform 2 [Homo
sapiens].
Length = 568
Score = 399 bits (1025), Expect = e-111
Identities = 193/283 (68%), Positives = 229/283 (80%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY +EKI IP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLW+L
Sbjct: 49 TYFNEKISIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWIL 108
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 109 LLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGS 168
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DTF FL+LD YGLRKLE GYEYV
Sbjct: 169 AIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 228
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+F+PSCSGC P++ QAVGIVGA+IMPHN+YLHSALVKSR+V+R +++
Sbjct: 229 VKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQE 288
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF IES IALFVSF IN+FV++VF +AF+ +TN+ V
Sbjct: 289 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVV 331
>ref|NP_001167597.1| natural resistance-associated macrophage protein 2 isoform 2 [Homo
sapiens].
Length = 568
Score = 399 bits (1025), Expect = e-111
Identities = 193/283 (68%), Positives = 229/283 (80%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY +EKI IP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLW+L
Sbjct: 49 TYFNEKISIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWIL 108
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 109 LLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGS 168
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DTF FL+LD YGLRKLE GYEYV
Sbjct: 169 AIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 228
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+F+PSCSGC P++ QAVGIVGA+IMPHN+YLHSALVKSR+V+R +++
Sbjct: 229 VKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQE 288
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF IES IALFVSF IN+FV++VF +AF+ +TN+ V
Sbjct: 289 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVV 331
>ref|NP_001167596.1| natural resistance-associated macrophage protein 2 isoform 1 [Homo
sapiens].
Length = 590
Score = 399 bits (1025), Expect = e-111
Identities = 193/283 (68%), Positives = 229/283 (80%)
Frame = +3
Query: 255 TYLSEKIPIPNAEPGTFSLRKLWAFTGPGFLMSIAYLDPGNIQSDLQAGAVAGFKLLWVL 434
TY +EKI IP E FS RKLWAFTGPGFLMSIAYLDPGNI+SDLQ+GAVAGFKLLW+L
Sbjct: 78 TYFNEKISIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWIL 137
Query: 435 LWATVLGLLCQRLAARLGVVTGKDLGEICHLYYPKVPRTLLWLTMELAIVGSDMQEVIGT 614
L AT++GLL QRLAARLGVVTG L E+CH YPKVPR +LWL +ELAI+GSDMQEVIG+
Sbjct: 138 LLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGS 197
Query: 615 AIAFNLLSAGGIPLWGGVLITVVDTFFFLYLDNYGLRKLEXXXXXXXXXXXXXXGYEYVV 794
AIA NLLS G IPLWGGVLIT+ DTF FL+LD YGLRKLE GYEYV
Sbjct: 198 AIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVT 257
Query: 795 ARPAQGALLRGLFLPSCSGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRED 974
+P+Q +L+G+F+PSCSGC P++ QAVGIVGA+IMPHN+YLHSALVKSR+V+R +++
Sbjct: 258 VKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQE 317
Query: 975 IREANMYFLIESTIALFVSFFINLFVMAVFGQAFYQQTNQAAV 1103
+REAN YF IES IALFVSF IN+FV++VF +AF+ +TN+ V
Sbjct: 318 VREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVV 360
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 71,244,422
Number of extensions: 2280761
Number of successful extensions: 10817
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10741
Number of HSP's successfully gapped: 8
Length of query: 564
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 456
Effective length of database: 14,737,052
Effective search space: 6720095712
Effective search space used: 6720095712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013750
(1692 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892871.2| Sus scrofa unplaced genomic scaffold ChrUScaf756 797 0.0
Sscrofa_Chr15 329 3e-87
>gb|GL892871.2| Sus scrofa unplaced genomic scaffold ChrUScaf756
Length = 56517
Score = 797 bits (402), Expect = 0.0
Identities = 417/422 (98%)
Strand = Plus / Plus
Query: 940 agtctcgagaggtagaccggacccgccgggaggacatccgagaagccaacatgtacttcc 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45078 agtctcgagaggtagaccggacccgccgggaggacatccgagaagccaacatgtacttcc 45137
Query: 1000 tgattgaatccaccatcgccctgtttgtctccttcttcatcaacctctttgtcatggctg 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45138 tgattgaatccaccatcgccctgtttgtctccttcttcatcaacctctttgtcatggctg 45197
Query: 1060 tctttgggcaagccttctaccagcaaaccaaccaggctgcggtgagacacaccccataca 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45198 tctttgggcaagccttctaccagcaaaccaaccaggctgcggtgagacacaccccataca 45257
Query: 1120 cacatgtcctgcaggctttgctggggaccccaggcaatgcagctaagccctttgagtctc 1179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45258 cacatgccctgcaggctttgctggggaccccaggcaatgcagctaagccctttgagtctc 45317
Query: 1180 tgtcctgcactccaggcactggtagggaagggagtccgtgactctggcctctgactggga 1239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 45318 tgtcctgcactccaggcactggtaggggagggagtccgtgactctggcctctgactggga 45377
Query: 1240 gccccttccccaccccactgggagacacaaatccccccatgcaggcttgcagagggtcag 1299
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 45378 gccccttccccaccccgctgggagacacagctccccccatgcaggcttgcagagggtcag 45437
Query: 1300 cccccacaccaggggctacaaggtacagacatccaggggaggggatggagggaggagtcg 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45438 cccccacaccaggggctacaaggtacagacatccaggggaggggatggagggaggagtcg 45497
Query: 1360 ag 1361
||
Sbjct: 45498 ag 45499
Score = 329 bits (166), Expect = 3e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 1 caatgccccgggcatgtgtgaggacagccaagttgagctgaagatgcgtaaaaggctata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40166 caatgccccgggcatgtgtgaggacagccaagttgagctgaagatgcgtaaaaggctata 40225
Query: 61 gacccacacactcaccggttcccagagaggacgggtggaccagagagccacccagcacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40226 gacccacacactcaccggttcccagagaggacgggtggaccagagagccacccagcacac 40285
Query: 121 cactcacacagagagcatctgagtctgtggtcctcatgacaggtga 166
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40286 cactcacacagagagcatctgagtctgtggtcctcatgacaggtga 40331
Score = 311 bits (157), Expect = 7e-82
Identities = 160/161 (99%)
Strand = Plus / Plus
Query: 1384 gctgcaccttgaagggtgggcaggacttgcccaagaagctgcagggagggaatcctggga 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45600 gctgcaccttgaagggtgggcaggacttgcccaagaagctgcagggagggaatcctggga 45659
Query: 1444 ggagatgccttcccaatgagcatggggttgtgaatatgcgggtggttattttctgctctg 1503
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 45660 ggagatgccttcccaatgagcatggggttgtgaatatgcgggtggtcattttctgctctg 45719
Query: 1504 gagcctccactgataatcttcattattagcagataaaccac 1544
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 45720 gagcctccactgataatcttcattattagcagataaaccac 45760
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 784 agtacgtggtggcgaggcctgctcagggagcacttcttaggggcctgttcctgccctcct 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43741 agtacgtggtggcgaggcctgctcagggagcacttcttaggggcctgttcctgccctcct 43800
Query: 844 gttctggctgcggccagcccgagctgctccaggccgtgggcatcgttggcgccatcatca 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43801 gttctggctgcggccagcccgagctgctccaggccgtgggcatcgttggcgccatcatca 43860
Query: 904 t 904
|
Sbjct: 43861 t 43861
Score = 234 bits (118), Expect = 1e-58
Identities = 121/122 (99%)
Strand = Plus / Plus
Query: 420 ctgctctgggtgctgctgtgggccacggtgttgggtttgctctgccagcgacttgctgcc 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 42050 ctgctctgggtgctgctgtgggccacggtgttgggattgctctgccagcgacttgctgcc 42109
Query: 480 cggctgggcgtggtgacaggcaaggacttgggtgagatctgccatctctactaccctaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42110 cggctgggcgtggtgacaggcaaggacttgggtgagatctgccatctctactaccctaag 42169
Query: 540 gt 541
||
Sbjct: 42170 gt 42171
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 160 caggtgacacaggccccccaaagcagagcagaacccaatatggctccatctccagctcac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40848 caggtgacacaggccccccaaagcagagcagaacccaatatggctccatctccagctcac 40907
Query: 220 cgagtccagggccaccacaagtacctcccggagg 253
||||||||||||||||||||||||||||||||||
Sbjct: 40908 cgagtccagggccaccacaagtacctcccggagg 40941
Score = 145 bits (73), Expect = 9e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 646 gaatcccactctggggtggtgtcctcatcaccgtcgtggacactttcttcttcctctacc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42984 gaatcccactctggggtggtgtcctcatcaccgtcgtggacactttcttcttcctctacc 43043
Query: 706 tagataactacgg 718
|||||||||||||
Sbjct: 43044 tagataactacgg 43056
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 717 gggctgcggaagctggaagccttttttgcattccttattgccattatggccttcacctt 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43388 gggctgcggaagctggaagccttttttgcattccttattgccattatggccttcacctt 43446
>Sscrofa_Chr15
|| Length = 157681621
Score = 329 bits (166), Expect = 3e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 1 caatgccccgggcatgtgtgaggacagccaagttgagctgaagatgcgtaaaaggctata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133452672 caatgccccgggcatgtgtgaggacagccaagttgagctgaagatgcgtaaaaggctata 133452731
Query: 61 gacccacacactcaccggttcccagagaggacgggtggaccagagagccacccagcacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133452732 gacccacacactcaccggttcccagagaggacgggtggaccagagagccacccagcacac 133452791
Query: 121 cactcacacagagagcatctgagtctgtggtcctcatgacaggtga 166
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133452792 cactcacacagagagcatctgagtctgtggtcctcatgacaggtga 133452837
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 160 caggtgacacaggccccccaaagcagagcagaacccaatatggctccatctccagctcac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133453353 caggtgacacaggccccccaaagcagagcagaacccaatatggctccatctccagctcac 133453412
Query: 220 cgagtccagggccaccacaagtacctcccggaggaacctacctgagtgagaagatcccca 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133453413 cgagtccagggccaccacaagtacctcccggaggaacctacctgagtgagaagatcccca 133453472
Query: 280 tcccgaatgcagaaccgg 297
||||||||||||||||||
Sbjct: 133453473 tcccgaatgcagaaccgg 133453490
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 296 gggcacattcagtctccgaaagctgtgggccttcaccgggcccggcttcctcatgagcat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133454344 gggcacattcagtctccgaaagctgtgggccttcaccgggcccggcttcctcatgagcat 133454403
Query: 356 tgcttacctggacccgggaaacatccagtcggatcttcaggctggcgctgtggctggatt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133454404 tgcttacctggacccgggaaacatccagtcggatcttcaggctggcgctgtggctggatt 133454463
Query: 416 caaa 419
||||
Sbjct: 133454464 caaa 133454467
Score = 234 bits (118), Expect = 1e-58
Identities = 121/122 (99%)
Strand = Plus / Plus
Query: 420 ctgctctgggtgctgctgtgggccacggtgttgggtttgctctgccagcgacttgctgcc 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 133454775 ctgctctgggtgctgctgtgggccacggtgttgggattgctctgccagcgacttgctgcc 133454834
Query: 480 cggctgggcgtggtgacaggcaaggacttgggtgagatctgccatctctactaccctaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133454835 cggctgggcgtggtgacaggcaaggacttgggtgagatctgccatctctactaccctaag 133454894
Query: 540 gt 541
||
Sbjct: 133454895 gt 133454896
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,470,766
Number of extensions: 284
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 12
Length of query: 1692
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1670
Effective length of database: 2,808,408,574
Effective search space: 4690042318580
Effective search space used: 4690042318580
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)