Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013751
(1748 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076946.1| C-1-tetrahydrofolate synthase, cytoplasmic [... 902 0.0
Alignment gi|NP_001069486.1| monofunctional C1-tetrahydrofolate synthase,... 742 0.0
Alignment gi|XP_002690382.1| PREDICTED: Monofunctional C1-tetrahydrofolat... 686 0.0
>ref|NP_001076946.1| C-1-tetrahydrofolate synthase, cytoplasmic [Bos taurus].
Length = 935
Score = 902 bits (2332), Expect = 0.0
Identities = 458/501 (91%), Positives = 466/501 (93%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH RMFHE+TQTDKALFNRLVPSVNGVRKFSDIQ+
Sbjct: 435 MEEFNLHLTGDIHAITAANNLVAAAIDARMFHEETQTDKALFNRLVPSVNGVRKFSDIQI 494
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RRL RLGIEKTDP TLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG
Sbjct: 495 RRLRRLGIEKTDPATLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 554
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
HSRTAQFDISVASEIMAVLALTSSLEDMRERL KMVVASSKKGEPIS EDLGVSGALTVL
Sbjct: 555 HSRTAQFDISVASEIMAVLALTSSLEDMRERLGKMVVASSKKGEPISTEDLGVSGALTVL 614
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD
Sbjct: 615 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 674
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEE+LELV KG
Sbjct: 675 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEEDLELVGKG 734
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
FSNL+KQIENA+MFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG
Sbjct: 735 FSNLKKQIENARMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 794
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
PSSFQLLYDL+LP+EDKIRIIAQKIYGAD+IELLPEAQHKAEVYTK
Sbjct: 795 ALALAEAVQRAAAAPSSFQLLYDLKLPVEDKIRIIAQKIYGADNIELLPEAQHKAEVYTK 854
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSHNPE KGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP
Sbjct: 855 QGFGNLPICMAKTHLSLSHNPELKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 914
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLDPETEQVNGLF
Sbjct: 915 TRPCFYDIDLDPETEQVNGLF 935
>ref|NP_001069486.1| monofunctional C1-tetrahydrofolate synthase, mitochondrial precursor
[Bos taurus].
Length = 975
Score = 742 bits (1916), Expect = 0.0
Identities = 374/501 (74%), Positives = 416/501 (83%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH
Animal-Genome cDNA 20110601C-013751
Animal-Genome cDNA 20110601C-013751
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013751
(1748 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537476.2| PREDICTED: similar to C-1-tetrahydrofolate synt... 903 0.0
Alignment gi|XP_533450.2| PREDICTED: similar to methylenetetrahydrofolate... 745 0.0
Alignment gi|XP_854263.1| PREDICTED: similar to methylenetetrahydrofolate... 100 6e-23
>ref|XP_537476.2| PREDICTED: similar to C-1-tetrahydrofolate synthase, cytoplasmic
(C1-THF synthase) [Canis familiaris].
Length = 935
Score = 903 bits (2333), Expect = 0.0
Identities = 458/501 (91%), Positives = 466/501 (93%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH RMFHE TQTDKALFNRLVPSVNGVRKFSDIQ+
Sbjct: 435 MEEFNLHLTGDIHAITAANNLVAAAIDARMFHELTQTDKALFNRLVPSVNGVRKFSDIQI 494
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RRL RLGIEKTDPTTLTD+EINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG
Sbjct: 495 RRLQRLGIEKTDPTTLTDDEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 554
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
H+RTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPIS EDLGVSGALTVL
Sbjct: 555 HTRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISTEDLGVSGALTVL 614
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD
Sbjct: 615 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 674
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGP VTAGLPLP+AYI ENLELVEKG
Sbjct: 675 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPMVTAGLPLPEAYIVENLELVEKG 734
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
FSNL+KQIENA+MFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGG G
Sbjct: 735 FSNLKKQIENARMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGMG 794
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
PSSFQLLYDL+LP+EDKIRIIAQKIYGADDIELLPEAQHKAEVYTK
Sbjct: 795 ALALAQAVQRAAQAPSSFQLLYDLKLPVEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 854
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP
Sbjct: 855 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 914
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLDPETEQVNGLF
Sbjct: 915 TRPCFYDIDLDPETEQVNGLF 935
>ref|XP_533450.2| PREDICTED: similar to methylenetetrahydrofolate dehydrogenase (NADP+
dependent) 1-like [Canis familiaris].
Length = 923
Score = 745 bits (1923), Expect = 0.0
Identities = 371/501 (74%), Positives = 420/501 (83%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQ R+ HE TQTDKAL+NRLVPSVNGVR+FS IQL
Sbjct: 475 MEEFNLHLTGDIHAITAANNLLAAAIDARILHENTQTDKALYNRLVPSVNGVREFSKIQL 534
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RL RLGI KTDP+ LT+EE+ +FARLDIDP TITWQRV+DTNDRFLRKITIGQA TEKG
Sbjct: 535 ARLKRLGINKTDPSALTEEEMRKFARLDIDPSTITWQRVVDTNDRFLRKITIGQANTEKG 594
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
SR AQFDI+VASEIMAVLALT SL DM+ERL +MVVAS + G+P++A+DLGV+GALTVL
Sbjct: 595 CSRQAQFDIAVASEIMAVLALTDSLSDMKERLGRMVVASDRNGQPVTADDLGVTGALTVL 654
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSS++AD+IALKLVG GFVVTEAGFGAD
Sbjct: 655 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSVLADKIALKLVGEGGFVVTEAGFGAD 714
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCR SGL P VVVLVATVRALKMHGGGP+VTAG+PL K Y EENL+LV G
Sbjct: 715 IGMEKFFNIKCRASGLVPSVVVLVATVRALKMHGGGPSVTAGVPLRKEYTEENLQLVADG 774
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
NL KQI+ A++FGVPVVVA+N FKTDT AE+DLV LAK GAF+AV C HW+ GGKG
Sbjct: 775 CCNLEKQIQIAQLFGVPVVVALNVFKTDTRAEIDLVCELAKRAGAFNAVPCYHWSIGGKG 834
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
S FQ LYD++LPI +KIR IAQ +YGA DIEL PEAQ K + YT+
Sbjct: 835 SVDLAWAVREAASKESRFQFLYDVQLPIVEKIRTIAQSVYGAKDIELSPEAQSKIDRYTE 894
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSH P++KGVP GF+LPI D+RAS+GAGF+YPLVGTMSTMPGLP
Sbjct: 895 QGFGNLPICMAKTHLSLSHQPDKKGVPKGFILPISDVRASIGAGFIYPLVGTMSTMPGLP 954
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLD ETEQV GLF
Sbjct: 955 TRPCFYDIDLDTETEQVKGLF 975
>ref|XP_002690382.1| PREDICTED: Monofunctional C1-tetrahydrofolate synthase,
mitochondrial-like [Bos taurus].
Length = 990
Score = 686 bits (1769), Expect = 0.0
Identities = 347/472 (73%), Positives = 389/472 (82%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH R+ HE TQTDKAL+NRLVPSVNGVR+FS IQL
Sbjct: 475 MEEFNLHLTGDIHAITAANNLLAAAIDARILHENTQTDKALYNRLVPSVNGVREFSKIQL 534
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RL RLGI KTDP+ LT+EE+ +FARLDIDP TITWQRV+DTNDRFLRKITIGQA TEKG
Sbjct: 535 ARLKRLGINKTDPSALTEEEMRKFARLDIDPSTITWQRVVDTNDRFLRKITIGQANTEKG 594
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
SR AQFDI+VASEIMAVLALT SL DM+ERL +MVVAS + G+P++A+DLGV+GALTVL
Sbjct: 595 CSRQAQFDIAVASEIMAVLALTDSLSDMKERLGRMVVASDRNGQPVTADDLGVTGALTVL 654
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSS++AD+IALKLVG GFVVTEAGFGAD
Sbjct: 655 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSVLADKIALKLVGEGGFVVTEAGFGAD 714
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCR SGL P VVVLVATVRALKMHGGGP+VTAG+PL K Y EENL+LV G
Sbjct: 715 IGMEKFFNIKCRASGLVPSVVVLVATVRALKMHGGGPSVTAGVPLRKEYTEENLQLVADG 774
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
NL KQI+ A++FGVPVVVA+N FKTDT AE+DLV LAK GAF+AV C HW+ GGKG
Sbjct: 775 CCNLEKQIQIAQLFGVPVVVALNVFKTDTRAEIDLVCELAKRAGAFNAVPCYHWSIGGKG 834
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
S FQ LYD++LPI +KIR IAQ +YGA DIEL PEAQ K + YT+
Sbjct: 835 SVDLAWAVREAASKESRFQFLYDVQLPIVEKIRTIAQSVYGAKDIELSPEAQSKIDRYTE 894
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGT 1417
QGFGNLPICMAKTHLSLSH P++KGVP GF+LPI D+RAS+GAGF+YPLVGT
Sbjct: 895 QGFGNLPICMAKTHLSLSHQPDKKGVPKGFILPISDVRASIGAGFIYPLVGT 946
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,797,411
Number of extensions: 2071326
Number of successful extensions: 6877
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6872
Number of HSP's successfully gapped: 3
Length of query: 582
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 474
Effective length of database: 14,107,870
Effective search space: 6687130380
Effective search space used: 6687130380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
TDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH R+ HE TQTDKAL+NRLVPSVNGVR+FS IQL
Sbjct: 423 MEEFNLHLTGDIHAITAANNLLAAAIDTRILHENTQTDKALYNRLVPSVNGVREFSSIQL 482
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RL +LGI KTDP+ LT+EE+++FARL+IDP TITWQRVLDTNDRFLRK+TIGQAPTEKG
Sbjct: 483 ARLKKLGINKTDPSALTEEEVSKFARLNIDPSTITWQRVLDTNDRFLRKMTIGQAPTEKG 542
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
+SR AQFDI+VASEIMAVLALT SL DM+ERL +MVVAS K G+P++AEDLGV+GALTVL
Sbjct: 543 YSRQAQFDIAVASEIMAVLALTDSLADMKERLGRMVVASDKDGQPVTAEDLGVTGALTVL 602
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSS++AD+IALKLVG EGFVVTEAGFGAD
Sbjct: 603 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSVLADKIALKLVGQEGFVVTEAGFGAD 662
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCR SGL P+ VVLVATVRALKMHGGGP+VTAG+PL + Y EEN++LV G
Sbjct: 663 IGMEKFFNIKCRASGLVPNAVVLVATVRALKMHGGGPSVTAGVPLKREYTEENIQLVADG 722
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
NL+KQI+ A++FGVPV+VA+N FKTDT AE+DLV LAK GAFDAV C HW+ GGKG
Sbjct: 723 CCNLQKQIQIAQLFGVPVIVALNVFKTDTRAEIDLVCELAKRAGAFDAVPCYHWSIGGKG 782
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
S F+ LYD++LPI +KIR IAQ +YGA DIEL PEAQ K + YT+
Sbjct: 783 TVELARAVREAASKGSRFRFLYDVQLPIVEKIRTIAQAVYGAKDIELSPEAQSKIDRYTQ 842
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSH P++KGVP F+LPI D+RAS+GAGF+YPLVGTMSTMPGLP
Sbjct: 843 QGFGNLPICMAKTHLSLSHQPDKKGVPRDFILPISDVRASIGAGFIYPLVGTMSTMPGLP 902
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLD ETEQV GLF
Sbjct: 903 TRPCFYDIDLDTETEQVKGLF 923
>ref|XP_854263.1| PREDICTED: similar to methylenetetrahydrofolate dehydrogenase
(NADP+ dependent), methenyltetrahydrofolate
cyclohydrolase, formyltetrahydrofolate synthase [Canis
familiaris].
Length = 144
Score = 100 bits (250), Expect(2) = 6e-23
Identities = 50/87 (57%), Positives = 60/87 (68%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
ME+F+L+LTGDIH +MFH+ QTDK LFN LVPSVNGVRKFSDIQ+
Sbjct: 56 MEQFDLYLTGDIHAIAAVNNLVAAAIDAQMFHKLMQTDKGLFNHLVPSVNGVRKFSDIQI 115
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARL 262
RRL RL IEKTDPT LTD+ + ++
Sbjct: 116 RRLQRLSIEKTDPTPLTDDRDKQICKI 142
Score = 26.6 bits (57), Expect(2) = 6e-23
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 238 RDKQICKIGH 267
RDKQICKIGH
Sbjct: 135 RDKQICKIGH 144
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 73,767,520
Number of extensions: 2128943
Number of successful extensions: 7079
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7072
Number of HSP's successfully gapped: 4
Length of query: 582
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 474
Effective length of database: 15,274,216
Effective search space: 7239978384
Effective search space used: 7239978384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013751
(1748 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924364.2| PREDICTED: c-1-tetrahydrofolate synthase, cy... 928 0.0
Alignment gi|XP_001924766.1| PREDICTED: monofunctional C1-tetrahydrofolat... 464 e-131
>ref|XP_001924364.2| PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic [Sus scrofa].
Length = 935
Score = 928 bits (2399), Expect = 0.0
Identities = 472/501 (94%), Positives = 472/501 (94%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH RMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL
Sbjct: 435 MEEFNLHLTGDIHAITAANNLVAAAIDARMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 494
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG
Sbjct: 495 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 554
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL
Sbjct: 555 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 614
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD
Sbjct: 615 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 674
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG
Sbjct: 675 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 734
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG
Sbjct: 735 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 794
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
PSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK
Sbjct: 795 ALALAQAVQRAAQAPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 854
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP
Sbjct: 855 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 914
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLDPETEQVNGLF
Sbjct: 915 TRPCFYDIDLDPETEQVNGLF 935
>ref|XP_001924766.1| PREDICTED: monofunctional C1-tetrahydrofolate synthase,
mitochondrial-like, partial [Sus scrofa].
Length = 307
Score = 464 bits (1193), Expect = e-131
Identities = 229/307 (74%), Positives = 256/307 (83%)
Frame = +2
Query: 584 GTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGADIGMEKFFNIKCRYS 763
GTPVFVHAGPFANIAHGNSS++AD+IALKLVG EGFVVTEAGFGADIGMEKFFNIKCR S
Sbjct: 1 GTPVFVHAGPFANIAHGNSSVLADKIALKLVGEEGFVVTEAGFGADIGMEKFFNIKCRAS 60
Query: 764 GLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKGFSNLRKQIENAKMF 943
GL P+VVVLVATVRALKMHGGGP+VTAG+PL K Y EENL+LV G NL+KQI+ A++F
Sbjct: 61 GLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENLQLVADGCCNLKKQIQIAQLF 120
Query: 944 GVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKGXXXXXXXXXXXXXX 1123
GVPVVVA+N FKTDT AE+DLV LAK+ GAFDAV C HW+ GGKG
Sbjct: 121 GVPVVVALNVFKTDTRAEIDLVCELAKQAGAFDAVPCYHWSVGGKGSVDLAWAVSEAAHK 180
Query: 1124 PSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTKQGFGNLPICMAKTH 1303
S FQ LYD++LPI +KIR IAQ +YGA DIEL EAQ K + YT+QGFGNLPICMAKTH
Sbjct: 181 GSRFQFLYDVQLPIVEKIRTIAQAVYGARDIELSSEAQSKIDRYTEQGFGNLPICMAKTH 240
Query: 1304 LSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLPTRPCFYDIDLDPET 1483
LSLSH P++KGVP F+LPI D+RAS+GAGF+YPLVGTMSTMPGLPTRPCFYDIDLD ET
Sbjct: 241 LSLSHQPDKKGVPKDFILPITDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTET 300
Query: 1484 EQVNGLF 1504
EQV GLF
Sbjct: 301 EQVQGLF 307
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,573,864
Number of extensions: 1329685
Number of successful extensions: 4338
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4331
Number of HSP's successfully gapped: 2
Length of query: 582
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 478
Effective length of database: 8,754,644
Effective search space: 4184719832
Effective search space used: 4184719832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013751
(1748 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_620084.2| C-1-tetrahydrofolate synthase, cytoplasmic [Mus... 887 0.0
Alignment gi|NP_001164257.1| monofunctional C1-tetrahydrofolate synthase,... 747 0.0
Alignment gi|NP_001164256.1| monofunctional C1-tetrahydrofolate synthase,... 747 0.0
Alignment gi|NP_758512.3| monofunctional C1-tetrahydrofolate synthase, mi... 747 0.0
>ref|NP_620084.2| C-1-tetrahydrofolate synthase, cytoplasmic [Mus musculus].
Length = 935
Score = 887 bits (2291), Expect = 0.0
Identities = 446/501 (89%), Positives = 465/501 (92%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH R+FHE TQTDKALFNRLVPSVNG+RKFSDIQ+
Sbjct: 435 MEEFNLHLTGDIHAITAANNLVAAAIDARIFHELTQTDKALFNRLVPSVNGIRKFSDIQI 494
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RRL RLGIEKTDPTTLTD+EINRFARLDIDPETITWQRVLDTNDRFLRKITIGQ+PTEKG
Sbjct: 495 RRLRRLGIEKTDPTTLTDDEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQSPTEKG 554
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
H+RTAQFDISVASEIMAVLALTSSLEDMRERL +MVVASSKKGEPIS EDLGVSGALTVL
Sbjct: 555 HTRTAQFDISVASEIMAVLALTSSLEDMRERLGRMVVASSKKGEPISCEDLGVSGALTVL 614
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD
Sbjct: 615 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 674
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCRYSGL+PHVVVLVATVRALKMHGGGPTVTAGLPLPKAY EE+L+LVEKG
Sbjct: 675 IGMEKFFNIKCRYSGLQPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYTEEDLDLVEKG 734
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
FSNLRKQIENA+MFGVPVVVAVN FKTDT+AELDLVSRL++EHGAFDAVKCTHWAEGG+G
Sbjct: 735 FSNLRKQIENARMFGVPVVVAVNVFKTDTDAELDLVSRLSREHGAFDAVKCTHWAEGGQG 794
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
PSSFQLLYDL+L IEDKIRIIAQ+IYGADDIELLPEAQ+KAE+YTK
Sbjct: 795 ALALAQAVQRASQAPSSFQLLYDLKLSIEDKIRIIAQRIYGADDIELLPEAQNKAEIYTK 854
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP
Sbjct: 855 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 914
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLDPETEQVNGLF
Sbjct: 915 TRPCFYDIDLDPETEQVNGLF 935
>ref|NP_001164257.1| monofunctional C1-tetrahydrofolate synthase, mitochondrial precursor
[Mus musculus].
Length = 977
Score = 747 bits (1928), Expect = 0.0
Identities = 374/501 (74%), Positives = 419/501 (83%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH R+ HE TQTDKAL+NRLVP VNGVR+FS+IQL
Sbjct: 477 MEEFNLHLTGDIHAITAANNLLAAAIDTRILHESTQTDKALYNRLVPLVNGVREFSEIQL 536
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RL +LGI KTDP+TLT+EE+ +FARL+IDP TITWQRVLDTNDRFLRKITIGQ TEKG
Sbjct: 537 SRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQRVLDTNDRFLRKITIGQGSTEKG 596
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
+SR AQFDI+VASEIMAVLALT SL DM+ERL +MVVAS K G+P++AEDLGV+GALTVL
Sbjct: 597 YSRQAQFDIAVASEIMAVLALTDSLTDMKERLGRMVVASDKDGQPVTAEDLGVTGALTVL 656
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSS++AD+IALKLVG EGFVVTEAGFGAD
Sbjct: 657 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSVLADKIALKLVGEEGFVVTEAGFGAD 716
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCR SGL P+VVVLVATVRALKMHGGGP+VTAG+PL K Y EEN++LV G
Sbjct: 717 IGMEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADG 776
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
NL+KQI+ A++FGVPVVVA+N FKTDT AE+DLV LAK GAFDAV C HW+ GGKG
Sbjct: 777 CCNLQKQIQIAQLFGVPVVVALNVFKTDTRAEIDLVCELAKRAGAFDAVPCYHWSAGGKG 836
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
S FQ LYD++LPI +KIR+IAQ +YGA DIEL PEAQ K + YT+
Sbjct: 837 SVDLARAVREAANKRSRFQFLYDVQLPIVEKIRVIAQTVYGAKDIELSPEAQSKIDRYTQ 896
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSH P++KGVP F LPI D+RAS+GAGF+YPLVGTMSTMPGLP
Sbjct: 897 QGFGNLPICMAKTHLSLSHEPDKKGVPRDFTLPISDVRASIGAGFIYPLVGTMSTMPGLP 956
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLD ETEQV GLF
Sbjct: 957 TRPCFYDIDLDTETEQVKGLF 977
>ref|NP_001164256.1| monofunctional C1-tetrahydrofolate synthase, mitochondrial precursor
[Mus musculus].
Length = 977
Score = 747 bits (1928), Expect = 0.0
Identities = 374/501 (74%), Positives = 419/501 (83%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH R+ HE TQTDKAL+NRLVP VNGVR+FS+IQL
Sbjct: 477 MEEFNLHLTGDIHAITAANNLLAAAIDTRILHESTQTDKALYNRLVPLVNGVREFSEIQL 536
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RL +LGI KTDP+TLT+EE+ +FARL+IDP TITWQRVLDTNDRFLRKITIGQ TEKG
Sbjct: 537 SRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQRVLDTNDRFLRKITIGQGSTEKG 596
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
+SR AQFDI+VASEIMAVLALT SL DM+ERL +MVVAS K G+P++AEDLGV+GALTVL
Sbjct: 597 YSRQAQFDIAVASEIMAVLALTDSLTDMKERLGRMVVASDKDGQPVTAEDLGVTGALTVL 656
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSS++AD+IALKLVG EGFVVTEAGFGAD
Sbjct: 657 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSVLADKIALKLVGEEGFVVTEAGFGAD 716
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCR SGL P+VVVLVATVRALKMHGGGP+VTAG+PL K Y EEN++LV G
Sbjct: 717 IGMEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADG 776
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
NL+KQI+ A++FGVPVVVA+N FKTDT AE+DLV LAK GAFDAV C HW+ GGKG
Sbjct: 777 CCNLQKQIQIAQLFGVPVVVALNVFKTDTRAEIDLVCELAKRAGAFDAVPCYHWSAGGKG 836
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
S FQ LYD++LPI +KIR+IAQ +YGA DIEL PEAQ K + YT+
Sbjct: 837 SVDLARAVREAANKRSRFQFLYDVQLPIVEKIRVIAQTVYGAKDIELSPEAQSKIDRYTQ 896
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSH P++KGVP F LPI D+RAS+GAGF+YPLVGTMSTMPGLP
Sbjct: 897 QGFGNLPICMAKTHLSLSHEPDKKGVPRDFTLPISDVRASIGAGFIYPLVGTMSTMPGLP 956
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLD ETEQV GLF
Sbjct: 957 TRPCFYDIDLDTETEQVKGLF 977
>ref|NP_758512.3| monofunctional C1-tetrahydrofolate synthase, mitochondrial precursor
[Mus musculus].
Length = 977
Score = 747 bits (1928), Expect = 0.0
Identities = 374/501 (74%), Positives = 419/501 (83%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH R+ HE TQTDKAL+NRLVP VNGVR+FS+IQL
Sbjct: 477 MEEFNLHLTGDIHAITAANNLLAAAIDTRILHESTQTDKALYNRLVPLVNGVREFSEIQL 536
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RL +LGI KTDP+TLT+EE+ +FARL+IDP TITWQRVLDTNDRFLRKITIGQ TEKG
Sbjct: 537 SRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQRVLDTNDRFLRKITIGQGSTEKG 596
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
+SR AQFDI+VASEIMAVLALT SL DM+ERL +MVVAS K G+P++AEDLGV+GALTVL
Sbjct: 597 YSRQAQFDIAVASEIMAVLALTDSLTDMKERLGRMVVASDKDGQPVTAEDLGVTGALTVL 656
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSS++AD+IALKLVG EGFVVTEAGFGAD
Sbjct: 657 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSVLADKIALKLVGEEGFVVTEAGFGAD 716
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCR SGL P+VVVLVATVRALKMHGGGP+VTAG+PL K Y EEN++LV G
Sbjct: 717 IGMEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADG 776
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
NL+KQI+ A++FGVPVVVA+N FKTDT AE+DLV LAK GAFDAV C HW+ GGKG
Sbjct: 777 CCNLQKQIQIAQLFGVPVVVALNVFKTDTRAEIDLVCELAKRAGAFDAVPCYHWSAGGKG 836
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
S FQ LYD++LPI +KIR+IAQ +YGA DIEL PEAQ K + YT+
Sbjct: 837 SVDLARAVREAANKRSRFQFLYDVQLPIVEKIRVIAQTVYGAKDIELSPEAQSKIDRYTQ 896
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSH P++KGVP F LPI D+RAS+GAGF+YPLVGTMSTMPGLP
Sbjct: 897 QGFGNLPICMAKTHLSLSHEPDKKGVPRDFTLPISDVRASIGAGFIYPLVGTMSTMPGLP 956
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLD ETEQV GLF
Sbjct: 957 TRPCFYDIDLDTETEQVKGLF 977
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,694,635
Number of extensions: 1779197
Number of successful extensions: 5491
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5462
Number of HSP's successfully gapped: 4
Length of query: 582
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 475
Effective length of database: 12,403,707
Effective search space: 5891760825
Effective search space used: 5891760825
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013751
(1748 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005947.3| C-1-tetrahydrofolate synthase, cytoplasmic [Hom... 899 0.0
Alignment gi|NP_001229697.1| monofunctional C1-tetrahydrofolate synthase,... 744 0.0
Alignment gi|NP_001229696.1| monofunctional C1-tetrahydrofolate synthase,... 744 0.0
Alignment gi|NP_056255.2| monofunctional C1-tetrahydrofolate synthase, mi... 744 0.0
>ref|NP_005947.3| C-1-tetrahydrofolate synthase, cytoplasmic [Homo sapiens].
Length = 935
Score = 899 bits (2324), Expect = 0.0
Identities = 451/501 (90%), Positives = 468/501 (93%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH R+FHE TQTDKALFNRLVPSVNGVR+FSDIQ+
Sbjct: 435 MEEFNLHLTGDIHAITAANNLVAAAIDARIFHELTQTDKALFNRLVPSVNGVRRFSDIQI 494
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RRL RLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG
Sbjct: 495 RRLKRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 554
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
H+RTAQFDISVASEIMAVLALT+SLEDMRERL KMVVASSKKGEP+SAEDLGVSGALTVL
Sbjct: 555 HTRTAQFDISVASEIMAVLALTTSLEDMRERLGKMVVASSKKGEPVSAEDLGVSGALTVL 614
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD
Sbjct: 615 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 674
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCRYSGL PHVVVLVATVRALKMHGGGPTVTAGLPLPKAYI+ENLELVEKG
Sbjct: 675 IGMEKFFNIKCRYSGLCPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIQENLELVEKG 734
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
FSNL+KQIENA+MFG+PVVVAVNAFKTDTE+ELDL+SRL++EHGAFDAVKCTHWAEGGKG
Sbjct: 735 FSNLKKQIENARMFGIPVVVAVNAFKTDTESELDLISRLSREHGAFDAVKCTHWAEGGKG 794
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
PSSFQLLYDL+LP+EDKIRIIAQKIYGADDIELLPEAQHKAEVYTK
Sbjct: 795 ALALAQAVQRAAQAPSSFQLLYDLKLPVEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 854
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSHNPEQKGVPTGF+LPIRDIRASVGAGFLYPLVGTMSTMPGLP
Sbjct: 855 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFILPIRDIRASVGAGFLYPLVGTMSTMPGLP 914
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLDPETEQVNGLF
Sbjct: 915 TRPCFYDIDLDPETEQVNGLF 935
>ref|NP_001229697.1| monofunctional C1-tetrahydrofolate synthase, mitochondrial isoform 3
[Homo sapiens].
Length = 913
Score = 744 bits (1920), Expect = 0.0
Identities = 372/501 (74%), Positives = 417/501 (83%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH R+ HE TQTDKAL+NRLVP VNGVR+FS+IQL
Sbjct: 413 MEEFNLHLTGDIHAITAANNLLAAAIDTRILHENTQTDKALYNRLVPLVNGVREFSEIQL 472
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RL +LGI KTDP+TLT+EE+++FARLDIDP TITWQRVLDTNDRFLRKITIGQ TEKG
Sbjct: 473 ARLKKLGINKTDPSTLTEEEVSKFARLDIDPSTITWQRVLDTNDRFLRKITIGQGNTEKG 532
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
H R AQFDI+VASEIMAVLALT SL DM+ RL +MVVAS K G+P++A+DLGV+GALTVL
Sbjct: 533 HYRQAQFDIAVASEIMAVLALTDSLADMKARLGRMVVASDKSGQPVTADDLGVTGALTVL 592
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSS++AD+IALKLVG EGFVVTEAGFGAD
Sbjct: 593 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSVLADKIALKLVGEEGFVVTEAGFGAD 652
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCR SGL P+VVVLVATVRALKMHGGGP+VTAG+PL K Y EEN++LV G
Sbjct: 653 IGMEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADG 712
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
NL+KQI+ ++FGVPVVVA+N FKTDT AE+DLV LAK GAFDAV C HW+ GGKG
Sbjct: 713 CCNLQKQIQITQLFGVPVVVALNVFKTDTRAEIDLVCELAKRAGAFDAVPCYHWSVGGKG 772
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
S FQ LYD+++PI DKIR IAQ +YGA DIEL PEAQ K + YT+
Sbjct: 773 SVDLARAVREAASKRSRFQFLYDVQVPIVDKIRTIAQAVYGAKDIELSPEAQAKIDRYTQ 832
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSH P++KGVP F+LPI D+RAS+GAGF+YPLVGTMSTMPGLP
Sbjct: 833 QGFGNLPICMAKTHLSLSHQPDKKGVPRDFILPISDVRASIGAGFIYPLVGTMSTMPGLP 892
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLD ETEQV GLF
Sbjct: 893 TRPCFYDIDLDTETEQVKGLF 913
>ref|NP_001229696.1| monofunctional C1-tetrahydrofolate synthase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 979
Score = 744 bits (1920), Expect = 0.0
Identities = 372/501 (74%), Positives = 417/501 (83%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH R+ HE TQTDKAL+NRLVP VNGVR+FS+IQL
Sbjct: 479 MEEFNLHLTGDIHAITAANNLLAAAIDTRILHENTQTDKALYNRLVPLVNGVREFSEIQL 538
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RL +LGI KTDP+TLT+EE+++FARLDIDP TITWQRVLDTNDRFLRKITIGQ TEKG
Sbjct: 539 ARLKKLGINKTDPSTLTEEEVSKFARLDIDPSTITWQRVLDTNDRFLRKITIGQGNTEKG 598
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
H R AQFDI+VASEIMAVLALT SL DM+ RL +MVVAS K G+P++A+DLGV+GALTVL
Sbjct: 599 HYRQAQFDIAVASEIMAVLALTDSLADMKARLGRMVVASDKSGQPVTADDLGVTGALTVL 658
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSS++AD+IALKLVG EGFVVTEAGFGAD
Sbjct: 659 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSVLADKIALKLVGEEGFVVTEAGFGAD 718
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCR SGL P+VVVLVATVRALKMHGGGP+VTAG+PL K Y EEN++LV G
Sbjct: 719 IGMEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADG 778
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
NL+KQI+ ++FGVPVVVA+N FKTDT AE+DLV LAK GAFDAV C HW+ GGKG
Sbjct: 779 CCNLQKQIQITQLFGVPVVVALNVFKTDTRAEIDLVCELAKRAGAFDAVPCYHWSVGGKG 838
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
S FQ LYD+++PI DKIR IAQ +YGA DIEL PEAQ K + YT+
Sbjct: 839 SVDLARAVREAASKRSRFQFLYDVQVPIVDKIRTIAQAVYGAKDIELSPEAQAKIDRYTQ 898
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSH P++KGVP F+LPI D+RAS+GAGF+YPLVGTMSTMPGLP
Sbjct: 899 QGFGNLPICMAKTHLSLSHQPDKKGVPRDFILPISDVRASIGAGFIYPLVGTMSTMPGLP 958
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLD ETEQV GLF
Sbjct: 959 TRPCFYDIDLDTETEQVKGLF 979
>ref|NP_056255.2| monofunctional C1-tetrahydrofolate synthase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 978
Score = 744 bits (1920), Expect = 0.0
Identities = 372/501 (74%), Positives = 417/501 (83%)
Frame = +2
Query: 2 MEEFNLHLTGDIHXXXXXXXXXXXXXXXRMFHEQTQTDKALFNRLVPSVNGVRKFSDIQL 181
MEEFNLHLTGDIH R+ HE TQTDKAL+NRLVP VNGVR+FS+IQL
Sbjct: 478 MEEFNLHLTGDIHAITAANNLLAAAIDTRILHENTQTDKALYNRLVPLVNGVREFSEIQL 537
Query: 182 RRLWRLGIEKTDPTTLTDEEINRFARLDIDPETITWQRVLDTNDRFLRKITIGQAPTEKG 361
RL +LGI KTDP+TLT+EE+++FARLDIDP TITWQRVLDTNDRFLRKITIGQ TEKG
Sbjct: 538 ARLKKLGINKTDPSTLTEEEVSKFARLDIDPSTITWQRVLDTNDRFLRKITIGQGNTEKG 597
Query: 362 HSRTAQFDISVASEIMAVLALTSSLEDMRERLSKMVVASSKKGEPISAEDLGVSGALTVL 541
H R AQFDI+VASEIMAVLALT SL DM+ RL +MVVAS K G+P++A+DLGV+GALTVL
Sbjct: 598 HYRQAQFDIAVASEIMAVLALTDSLADMKARLGRMVVASDKSGQPVTADDLGVTGALTVL 657
Query: 542 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGFGAD 721
MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSS++AD+IALKLVG EGFVVTEAGFGAD
Sbjct: 658 MKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSVLADKIALKLVGEEGFVVTEAGFGAD 717
Query: 722 IGMEKFFNIKCRYSGLRPHVVVLVATVRALKMHGGGPTVTAGLPLPKAYIEENLELVEKG 901
IGMEKFFNIKCR SGL P+VVVLVATVRALKMHGGGP+VTAG+PL K Y EEN++LV G
Sbjct: 718 IGMEKFFNIKCRASGLVPNVVVLVATVRALKMHGGGPSVTAGVPLKKEYTEENIQLVADG 777
Query: 902 FSNLRKQIENAKMFGVPVVVAVNAFKTDTEAELDLVSRLAKEHGAFDAVKCTHWAEGGKG 1081
NL+KQI+ ++FGVPVVVA+N FKTDT AE+DLV LAK GAFDAV C HW+ GGKG
Sbjct: 778 CCNLQKQIQITQLFGVPVVVALNVFKTDTRAEIDLVCELAKRAGAFDAVPCYHWSVGGKG 837
Query: 1082 XXXXXXXXXXXXXXPSSFQLLYDLELPIEDKIRIIAQKIYGADDIELLPEAQHKAEVYTK 1261
S FQ LYD+++PI DKIR IAQ +YGA DIEL PEAQ K + YT+
Sbjct: 838 SVDLARAVREAASKRSRFQFLYDVQVPIVDKIRTIAQAVYGAKDIELSPEAQAKIDRYTQ 897
Query: 1262 QGFGNLPICMAKTHLSLSHNPEQKGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLP 1441
QGFGNLPICMAKTHLSLSH P++KGVP F+LPI D+RAS+GAGF+YPLVGTMSTMPGLP
Sbjct: 898 QGFGNLPICMAKTHLSLSHQPDKKGVPRDFILPISDVRASIGAGFIYPLVGTMSTMPGLP 957
Query: 1442 TRPCFYDIDLDPETEQVNGLF 1504
TRPCFYDIDLD ETEQV GLF
Sbjct: 958 TRPCFYDIDLDTETEQVKGLF 978
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,632,479
Number of extensions: 2105786
Number of successful extensions: 7008
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6988
Number of HSP's successfully gapped: 4
Length of query: 582
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 474
Effective length of database: 14,737,052
Effective search space: 6985362648
Effective search space used: 6985362648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013751
(1748 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 476 e-131
Sscrofa_Chr05 94 3e-16
>Sscrofa_Chr07
|| Length = 134764511
Score = 476 bits (240), Expect = e-131
Identities = 240/240 (100%)
Strand = Plus / Plus
Query: 1509 cagattgtccagcttcaggaagctgctttgaaggtttggccagtgtttattcaggccccc 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94894737 cagattgtccagcttcaggaagctgctttgaaggtttggccagtgtttattcaggccccc 94894796
Query: 1569 tgtcaggaagtgtggggagatcagaagtcagtccctgccccgaagatcttcagaaataag 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94894797 tgtcaggaagtgtggggagatcagaagtcagtccctgccccgaagatcttcagaaataag 94894856
Query: 1629 tagtgggagtttccccagaagcctttcttcagtcttacttcccatcatcatgtataaatt 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94894857 tagtgggagtttccccagaagcctttcttcagtcttacttcccatcatcatgtataaatt 94894916
Query: 1689 agcataaatcacacacatctttaattactaaatccatagaataaaagcacataattttgc 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94894917 agcataaatcacacacatctttaattactaaatccatagaataaaagcacataattttgc 94894976
Score = 353 bits (178), Expect = 2e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 979 gacagatacagaggctgagctggacctcgtcagccgcctcgccaaggaacatggggcttt 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94885390 gacagatacagaggctgagctggacctcgtcagccgcctcgccaaggaacatggggcttt 94885449
Query: 1039 tgatgctgtgaagtgcactcactgggcagaagggggcaagggcgccctggcgctggctca 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94885450 tgatgctgtgaagtgcactcactgggcagaagggggcaagggcgccctggcgctggctca 94885509
Query: 1099 ggccgtccagagagcagctcaggctcccagcagcttccagctcctctatgacctcgag 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94885510 ggccgtccagagagcagctcaggctcccagcagcttccagctcctctatgacctcgag 94885567
Score = 309 bits (156), Expect = 3e-81
Identities = 159/160 (99%)
Strand = Plus / Plus
Query: 1263 agggctttgggaatctgcccatctgcatggccaagacacacctgtccttgtcgcacaacc 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94888841 agggctttgggaatctgcccatctgcatggccaagacacacctgtccttgtcgcacaacc 94888900
Query: 1323 cagagcaaaaaggcgtgcccacgggcttcgtcctgcctattcgagacatccgtgcaagcg 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94888901 cagagcaaaaaggcgtgcccacgggcttcgtcctgcctattcgagacatccgtgcaagcg 94888960
Query: 1383 ttggggctggctttctgtaccccttggtgggaacgatgag 1422
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 94888961 ttggggctggctttctgtaccccttggtgggaacggtgag 94889000
Score = 285 bits (144), Expect = 4e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 694 agtgaccgaagcaggattcggagcagacatcggaatggaaaagttctttaacatcaagtg 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94879198 agtgaccgaagcaggattcggagcagacatcggaatggaaaagttctttaacatcaagtg 94879257
Query: 754 ccggtattcaggtctccgccctcacgtggtggtgcttgttgccactgtcagggctctgaa 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94879258 ccggtattcaggtctccgccctcacgtggtggtgcttgttgccactgtcagggctctgaa 94879317
Query: 814 aatgcacggaggcggccccacggt 837
||||||||||||||||||||||||
Sbjct: 94879318 aatgcacggaggcggccccacggt 94879341
Score = 283 bits (143), Expect = 2e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 373 ggcgcagtttgatatctctgtggcaagtgaaatcatggctgtcctggctctcaccagttc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94876643 ggcgcagtttgatatctctgtggcaagtgaaatcatggctgtcctggctctcaccagttc 94876702
Query: 433 tctagaagacatgagagagagactgagcaaaatggtggtggcatccagcaagaaagggga 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94876703 tctagaagacatgagagagagactgagcaaaatggtggtggcatccagcaagaaagggga 94876762
Query: 493 gcccatcagtgctgaagatctgg 515
|||||||||||||||||||||||
Sbjct: 94876763 gcccatcagtgctgaagatctgg 94876785
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 582 agggcaccccagtgttcgttcatgccgggccgtttgccaacatcgcacacggaaattcgt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94879002 agggcaccccagtgttcgttcatgccgggccgtttgccaacatcgcacacggaaattcgt 94879061
Query: 642 ccatcattgcagaccggattgcactcaagcttgttggtcctgaagggtttgtag 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94879062 ccatcattgcagaccggattgcactcaagcttgttggtcctgaagggtttgtag 94879115
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1155 agctcccaattgaggataaaatcaggatcattgcgcagaagatctatggggcagatgaca 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94888201 agctcccaattgaggataaaatcaggatcattgcgcagaagatctatggggcagatgaca 94888260
Query: 1215 ttgaattgctccctgaagcacagcacaaagctgaagtctacacaaagcagg 1265
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94888261 ttgaattgctccctgaagcacagcacaaagctgaagtctacacaaagcagg 94888311
Score = 212 bits (107), Expect = 5e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 9 agtttaatctccacctcactggtgacatccacgccatcaccgcagctaataaccttgttg 68
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 94870074 agtttaatctccacctcactggtgacatccatgccatcaccgcagctaataaccttgttg 94870133
Query: 69 ctgcagccatcgatgcccggatgttccatgaacagacccagacagacaagg 119
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94870134 ctgcagccatcgatgcccggatgttccatgaacagacccagacagacaagg 94870184
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 193 gagactaggcattgaaaagactgaccctaccacactgacagatgaagagataaacagatt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94873529 gagactaggcattgaaaagactgaccctaccacactgacagatgaagagataaacagatt 94873588
Query: 253 tgcaagattggacattgatccagaaactataacttggcaaagag 296
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94873589 tgcaagattggacattgatccagaaactataacttggcaaagag 94873632
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 876 agaacctggagttggttgaaaaaggcttcagtaacttgaggaaacaaattgaaaatgcca 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94884461 agaacctggagttggttgaaaaaggcttcagtaacttgaggaaacaaattgaaaatgcca 94884520
Query: 936 aaatgtttggagttcctgtggtagtggctgtgaatgcctttaag 979
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94884521 aaatgtttggagttcctgtggtagtggctgtgaatgcctttaag 94884564
Score = 188 bits (95), Expect = 7e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1417 gatgagcaccatgcctggactccctacccggccctgtttctatgacatcgatttggaccc 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94892950 gatgagcaccatgcctggactccctacccggccctgtttctatgacatcgatttggaccc 94893009
Query: 1477 tgaaactgagcaggtgaatgggctgttctaaacag 1511
|||||||||||||||||||||||||||||||||||
Sbjct: 94893010 tgaaactgagcaggtgaatgggctgttctaaacag 94893044
Score = 159 bits (80), Expect = 6e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 295 agtgttggataccaatgatagattcctgaggaagatcacaattggacaggctcccacgga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94875948 agtgttggataccaatgatagattcctgaggaagatcacaattggacaggctcccacgga 94876007
Query: 355 gaaggggcactcacggacgg 374
||||||||||||||||||||
Sbjct: 94876008 gaaggggcactcacggacgg 94876027
Score = 155 bits (78), Expect = 1e-34
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 116 aaggctctctttaatcgtttggtgccatcagtaaatggagtgagaaagttctctgatatc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94870322 aaggctctctttaatcgtttggtgccatcagtaaatggagtgagaaagttctctgatatc 94870381
Query: 176 caactccggaggctgtgg 193
||||||||||||||||||
Sbjct: 94870382 caactccggaggctgtgg 94870399
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 514 gggtgtgagcggagcgttgacggtacttatgaaggacgccatcaagcccaacctcatgca 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94878645 gggtgtgagcggagcgttgacggtacttatgaaggacgccatcaagcccaacctcatgca 94878704
Query: 574 gacattagagg 584
|||||||||||
Sbjct: 94878705 gacattagagg 94878715
Score = 85.7 bits (43), Expect = 8e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 835 ggttactgctggacttcctcttcccaaggcttacatagaggag 877
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94882186 ggttactgctggacttcctcttcccaaggcttacatagaggag 94882228
>Sscrofa_Chr05
|| Length = 111506441
Score = 93.7 bits (47), Expect = 3e-16
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 1617 ttcagaaataagtagtgggagtttccccagaagcctttcttcagtcttacttcccatcat 1676
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20805640 ttcagaaataagcagtggcagtttccccagaagcctttcttcagtcttcattcccatcat 20805699
Query: 1677 catgtataaat 1687
| ||||||||
Sbjct: 20805700 cgggtataaat 20805710
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,524,482
Number of extensions: 420
Number of successful extensions: 420
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 16
Length of query: 1748
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1726
Effective length of database: 2,808,408,574
Effective search space: 4847313198724
Effective search space used: 4847313198724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)