Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013752
(1041 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548208.2| PREDICTED: similar to WD-repeat protein 50 [Can... 300 1e-81
>ref|XP_548208.2| PREDICTED: similar to WD-repeat protein 50 [Canis familiaris].
Length = 555
Score = 300 bits (768), Expect = 1e-81
Identities = 173/330 (52%), Positives = 193/330 (58%), Gaps = 1/330 (0%)
Frame = +3
Query: 54 MPPERRGRARPDRTPGVRPGRKTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 233
MPPERR RARPDR+ G R RK++
Sbjct: 1 MPPERRSRARPDRSAGARLDRKSRKKPDRRAAAGPGGPPRKAAPSSQRKPPARPSAAAAA 60
Query: 234 XXXXXXXXXXXXXXXXXXXXXDKPAVEQCLEELVFGXXXXXXXXXXXXXXGPRVQVQEDS 413
DKPAVE+CLEELVFG G RVQ QEDS
Sbjct: 61 IAVAAEEERRLRQRNRLALEEDKPAVERCLEELVFGDVEDDEDALLRRLQGSRVQAQEDS 120
Query: 414 GDSEVENEAKDNFPPQKKPVWLXXXXXXXXXXXXXNNRFRKDMMKNASESKLSKDELQKR 593
DSE E E KDNF QKKPVW+ NNRFRKDMMKN ES+LSKD+LQKR
Sbjct: 121 DDSEAEKEPKDNFLFQKKPVWVDEEDEDDEMVDMMNNRFRKDMMKNTGESQLSKDKLQKR 180
Query: 594 LKEEFQHAMGGVPAWAETSRRKTXXXXXXXXXXXXLLQRTGNFIATSTSLPKGILKMKNC 773
LKEEFQHAMGGVPAWAET+++KT LLQRTGNFI+TSTSLPKGILK+KNC
Sbjct: 181 LKEEFQHAMGGVPAWAETNKQKTSLDDESEEDEDDLLQRTGNFISTSTSLPKGILKIKNC 240
Query: 774 QHANAERPTTAEISSVQFHPRAQVVMVAGLDNAISLFQVDGKTILKFRASIWKSFNL-*G 950
QHANAERPTTA ISSVQFHPRAQVVMVA LDNA+SLFQVDG+T K ++ + F +
Sbjct: 241 QHANAERPTTARISSVQFHPRAQVVMVAALDNAVSLFQVDGRTNPKIQSIYLEKFPIYKA 300
Query: 951 SF*C*WRRSFSHEYSSRVLYVYDMLAGKLI 1040
F + S+VLYVYDMLAGKLI
Sbjct: 301 CFSANGEEVLATSIHSKVLYVYDMLAGKLI 330
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,936,807
Number of extensions: 829659
Number of successful extensions: 3514
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3504
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013752
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013752
(1041 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092349.1| U3 small nucleolar RNA-associated protein 18... 300 2e-81
>ref|NP_001092349.1| U3 small nucleolar RNA-associated protein 18 homolog [Bos taurus].
Length = 547
Score = 300 bits (767), Expect = 2e-81
Identities = 163/249 (65%), Positives = 177/249 (71%), Gaps = 1/249 (0%)
Frame = +3
Query: 297 DKPAVEQCLEELVFGXXXXXXXXXXXXXXGPRVQVQEDSGDSEVENEAKDNFPPQKKPVW 476
DKPA E+CLEELVFG P VQVQEDS DSEVE EAKDNF PQKKPVW
Sbjct: 74 DKPAAERCLEELVFGDVEDDEDALLRRLRVPLVQVQEDSDDSEVEKEAKDNFLPQKKPVW 133
Query: 477 LXXXXXXXXXXXXXNNRFRKDMMKNASESKLSKDELQKRLKEEFQHAMGGVPAWAETSRR 656
L NNRFRKDMMKNASE++LSKDELQKRLKEEFQHAMGGVPAWAE ++
Sbjct: 134 LDEEDEDEEMVDMMNNRFRKDMMKNASENQLSKDELQKRLKEEFQHAMGGVPAWAEANKW 193
Query: 657 KTXXXXXXXXXXXXLLQRTGNFIATSTSLPKGILKMKNCQHANAERPTTAEISSVQFHPR 836
KT LLQRTGNFI+TSTSLPKGILKMKNCQHANAERPTTA ISSVQFHPR
Sbjct: 194 KTPSDDESEEEEDDLLQRTGNFISTSTSLPKGILKMKNCQHANAERPTTARISSVQFHPR 253
Query: 837 AQVVMVAGLDNAISLFQVDGKTILKFRASIWKSFNL-*GSF*C*WRRSFSHEYSSRVLYV 1013
AQVVMVAGLDNA+SLFQVDGKT K ++ + F + F + S++LYV
Sbjct: 254 AQVVMVAGLDNAVSLFQVDGKTNPKIQSIYLEKFPIFKACFSANGEEVLATSTHSKILYV 313
Query: 1014 YDMLAGKLI 1040
YDMLAGKLI
Sbjct: 314 YDMLAGKLI 322
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,421,415
Number of extensions: 801824
Number of successful extensions: 3485
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3471
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013752
(1041 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131644.2| PREDICTED: u3 small nucleolar RNA-associated... 398 e-111
>ref|XP_003131644.2| PREDICTED: u3 small nucleolar RNA-associated protein 18 homolog [Sus
scrofa].
Length = 572
Score = 398 bits (1022), Expect = e-111
Identities = 223/347 (64%), Positives = 228/347 (65%), Gaps = 1/347 (0%)
Frame = +3
Query: 3 MRSEVPRERPRSFSNPRMPPERRGRARPDRTPGVRPGRKTQVXXXXXXXXXXXXXXXXXX 182
MRSEVPRERPRSFSNPRMPPERRGRARPDRTPGVRPGRKTQV
Sbjct: 1 MRSEVPRERPRSFSNPRMPPERRGRARPDRTPGVRPGRKTQVKPGRRAGLGRAGPPRKAA 60
Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKPAVEQCLEELVFGXXXXXXX 362
DKPAVEQCLEELVFG
Sbjct: 61 ASSQRQPPAPPGAAAAAIAIAAEEERRLRQRNRLRLEEDKPAVEQCLEELVFGDVLDDED 120
Query: 363 XXXXXXXGPRVQVQEDSGDSEVENEAKDNFPPQKKPVWLXXXXXXXXXXXXXNNRFRKDM 542
GPRVQVQEDSGDSEVENEAKDNFPPQKKPVWL NNRFRKDM
Sbjct: 121 ALLRRLRGPRVQVQEDSGDSEVENEAKDNFPPQKKPVWLDEEDEDEEMVDMMNNRFRKDM 180
Query: 543 MKNASESKLSKDELQKRLKEEFQHAMGGVPAWAETSRRKTXXXXXXXXXXXXLLQRTGNF 722
MKNASESKLSKDELQKRLKEEFQHAMGGVPAWAETSRRKT LLQRTGNF
Sbjct: 181 MKNASESKLSKDELQKRLKEEFQHAMGGVPAWAETSRRKTSSDDESEEDEDDLLQRTGNF 240
Query: 723 IATSTSLPKGILKMKNCQHANAERPTTAEISSVQFHPRAQVVMVAGLDNAISLFQVDGKT 902
IATSTSLPKGILKMKNCQHANAERPTTAEISSVQFHPRAQVVMVAGLDNAISLFQVDGKT
Sbjct: 241 IATSTSLPKGILKMKNCQHANAERPTTAEISSVQFHPRAQVVMVAGLDNAISLFQVDGKT 300
Query: 903 ILKFRASIWKSFNL-*GSF*C*WRRSFSHEYSSRVLYVYDMLAGKLI 1040
K ++ + F + F + SRVLYVYDMLAGKLI
Sbjct: 301 NPKIQSIYLEKFPIFKARFSANGEEVLATSTHSRVLYVYDMLAGKLI 347
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,905,529
Number of extensions: 515332
Number of successful extensions: 2200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2191
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013752
(1041 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013393.1| U3 small nucleolar RNA-associated protein 18... 261 5e-70
>ref|NP_001013393.1| U3 small nucleolar RNA-associated protein 18 homolog [Mus musculus].
Length = 552
Score = 261 bits (668), Expect = 5e-70
Identities = 149/251 (59%), Positives = 170/251 (67%), Gaps = 3/251 (1%)
Frame = +3
Query: 297 DKPAVEQCLEELVFGXXXXXXXXXXXXXXGPRVQVQEDSGDSEVENEAKDNFPPQKK-PV 473
DKPA E+CLE+LVFG R Q+ S +SEVENEAKD F +KK PV
Sbjct: 77 DKPAAERCLEQLVFGDVEDDEDALLQRLRSSRGQLHGSSDESEVENEAKDIFSQKKKQPV 136
Query: 474 WLXXXXXXXXXXXXXNNRFRKDMMKNASESKLSKDELQKRLKEEFQHAMGGVPAWAET-S 650
W+ NNRFRKD+MKNASESKLSKD+LQKRLKEEFQHAMGGVP WAE S
Sbjct: 137 WVDEDDEDEEIVDMSNNRFRKDIMKNASESKLSKDKLQKRLKEEFQHAMGGVPDWAEAGS 196
Query: 651 RRKTXXXXXXXXXXXXLLQRTGNFIATSTSLPKGILKMKNCQHANAERPTTAEISSVQFH 830
+R+T LLQRTGNFI+TSTSLP+GILKMKNC+ ANAERPTTA ISSVQFH
Sbjct: 197 KRRTSSDDESEEDEDDLLQRTGNFISTSTSLPRGILKMKNCRPANAERPTTARISSVQFH 256
Query: 831 PRAQVVMVAGLDNAISLFQVDGKTILKFRASIWKSFNL-*GSF*C*WRRSFSHEYSSRVL 1007
P AQVVMV+G+DNAISLFQVDGKT K ++ + F + F + S+VL
Sbjct: 257 PGAQVVMVSGVDNAISLFQVDGKTNPKIQSIYLEKFPIFKACFSANGEEVLATSMHSKVL 316
Query: 1008 YVYDMLAGKLI 1040
YVYDMLAGKLI
Sbjct: 317 YVYDMLAGKLI 327
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,108,692
Number of extensions: 678213
Number of successful extensions: 2603
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2583
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013752
(1041 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057085.2| U3 small nucleolar RNA-associated protein 18 ho... 306 2e-83
>ref|NP_057085.2| U3 small nucleolar RNA-associated protein 18 homolog [Homo sapiens].
Length = 556
Score = 306 bits (784), Expect = 2e-83
Identities = 164/249 (65%), Positives = 179/249 (71%), Gaps = 1/249 (0%)
Frame = +3
Query: 297 DKPAVEQCLEELVFGXXXXXXXXXXXXXXGPRVQVQEDSGDSEVENEAKDNFPPQKKPVW 476
DKPAVE+CLEELVFG GPRVQ EDSGDSEVENEAK NFPPQKKPVW
Sbjct: 83 DKPAVERCLEELVFGDVENDEDALLRRLRGPRVQEHEDSGDSEVENEAKGNFPPQKKPVW 142
Query: 477 LXXXXXXXXXXXXXNNRFRKDMMKNASESKLSKDELQKRLKEEFQHAMGGVPAWAETSRR 656
+ NNRFRKDMMKNASESKLSKD L+KRLKEEFQHAMGGVPAWAET++R
Sbjct: 143 VDEEDEDEEMVDMMNNRFRKDMMKNASESKLSKDNLKKRLKEEFQHAMGGVPAWAETTKR 202
Query: 657 KTXXXXXXXXXXXXLLQRTGNFIATSTSLPKGILKMKNCQHANAERPTTAEISSVQFHPR 836
KT LLQRTGNFI+TSTSLP+GILKMKNCQHANAERPT A ISSVQFHP
Sbjct: 203 KTSSDDESEEDEDDLLQRTGNFISTSTSLPRGILKMKNCQHANAERPTVARISSVQFHPG 262
Query: 837 AQVVMVAGLDNAISLFQVDGKTILKFRASIWKSFNL-*GSF*C*WRRSFSHEYSSRVLYV 1013
AQ+VMVAGLDNA+SLFQVDGKT K ++ + F + F + S+VLYV
Sbjct: 263 AQIVMVAGLDNAVSLFQVDGKTNPKIQSIYLERFPIFKACFSANGEEVLATSTHSKVLYV 322
Query: 1014 YDMLAGKLI 1040
YDMLAGKLI
Sbjct: 323 YDMLAGKLI 331
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,195,513
Number of extensions: 807352
Number of successful extensions: 3291
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3276
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013752
(1041 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 781 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 781 bits (394), Expect = 0.0
Identities = 394/394 (100%)
Strand = Plus / Plus
Query: 1 gcatgcgcagtgaggttccacgtgagcgcccgcgttccttctcaaacccaaggatgccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27595098 gcatgcgcagtgaggttccacgtgagcgcccgcgttccttctcaaacccaaggatgccgc 27595157
Query: 61 cggaacggaggggccgagcgagaccggacaggacacccggagtgagaccgggccggaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27595158 cggaacggaggggccgagcgagaccggacaggacacccggagtgagaccgggccggaaga 27595217
Query: 121 cccaagtgaagccgggccggagagctggactggggcgggctgggccgccccgaaaggctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27595218 cccaagtgaagccgggccggagagctggactggggcgggctgggccgccccgaaaggctg 27595277
Query: 181 ctgcttcatcccagcggcaaccgccggccccgccgggagcagcggccgctgcgatagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27595278 ctgcttcatcccagcggcaaccgccggccccgccgggagcagcggccgctgcgatagcaa 27595337
Query: 241 tcgcggcggaggaggagagacggctccggcagcggaatcgcttgaggctggaggaggaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27595338 tcgcggcggaggaggagagacggctccggcagcggaatcgcttgaggctggaggaggaca 27595397
Query: 301 agccggccgtggagcagtgcctggaggagctggtcttcggcgatgtgttggacgacgagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27595398 agccggccgtggagcagtgcctggaggagctggtcttcggcgatgtgttggacgacgagg 27595457
Query: 361 acgcgctgctgcggcgtctgcggggcccgcgggt 394
||||||||||||||||||||||||||||||||||
Sbjct: 27595458 acgcgctgctgcggcgtctgcggggcccgcgggt 27595491
Score = 260 bits (131), Expect = 1e-66
Identities = 155/159 (97%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 886 aggttgatggaaaaacaa-tcctaaaattcagagcatctatttggaaaagtttc-aatct 943
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 27609079 aggttgatggaaaaacaaatcctaaaattcagagcatctatttggaaaagtttccaatct 27609138
Query: 944 ttaaggctcgttttagtgctaatggagaagaagttttagccacgagtactca-agcaggg 1002
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 27609139 ttaaggctcgttttagtgctaatggagaagaggttttagccacgagtactcacagcaggg 27609198
Query: 1003 tgctttatgtctatgatatgctggctggaaagctaattc 1041
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27609199 tgctttatgtctatgatatgctggctggaaagctaattc 27609237
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 760 agatgaagaactgccaacatgctaatgctgaacgtcctactactgctgagatctcatctg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27608855 agatgaagaactgccaacatgctaatgctgaacgtcctactactgctgagatctcatctg 27608914
Query: 820 tgcagttccatcctcgtgcacaggttgtgatggtcgcgggactagataacgccatatcgc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27608915 tgcagttccatcctcgtgcacaggttgtgatggtcgcgggactagataacgccatatcgc 27608974
Query: 880 tgtttcaggt 889
||||||||||
Sbjct: 27608975 tgtttcaggt 27608984
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 392 ggttcaagtacaggaagactcaggcgactcggaagtggagaatgaagcaaaagataattt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27597384 ggttcaagtacaggaagactcaggcgactcggaagtggagaatgaagcaaaagataattt 27597443
Query: 452 tccacctcaaaagaagccagtttggctggatgaagaagatgaagatgaggagatg 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27597444 tccacctcaaaagaagccagtttggctggatgaagaagatgaagatgaggagatg 27597498
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 506 ggtcgacatgatgaacaaccgttttcggaaagatatgatgaaaaatgccagtgaaagtaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27599876 ggtcgacatgatgaacaaccgttttcggaaagatatgatgaaaaatgccagtgaaagtaa 27599935
Query: 566 actttccaaagatgagcttcaaaagagacttaaagaaga 604
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27599936 actttccaaagatgagcttcaaaagagacttaaagaaga 27599974
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 672 gatgaaagtgaagaggatgaagatgatttgttgcaaaggactgggaatttcatagccaca 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27606682 gatgaaagtgaagaggatgaagatgatttgttgcaaaggactgggaatttcatagccaca 27606741
Query: 732 tcaacctctcttcctaaaggaatcttgaag 761
||||||||||||||||||||||||||||||
Sbjct: 27606742 tcaacctctcttcctaaaggaatcttgaag 27606771
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 605 attccagcatgccatggggggtgtgcctgcctgggcagagaccagtaggcggaaaacatc 664
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Sbjct: 27602991 attccagcatgccatggggggtgtgcctgcctgggcagagaccagtaggcggaaaacatc 27603050
Query: 665 ttcggatg 672
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Sbjct: 27603051 ttcggatg 27603058
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,686,483
Number of extensions: 351
Number of successful extensions: 351
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 7
Length of query: 1041
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1020
Effective length of database: 2,808,413,156
Effective search space: 2864581419120
Effective search space used: 2864581419120
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)