Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013756
(961 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193081.1| cytoplasmic dynein 1 light intermediate chai... 632 0.0
Alignment gi|XP_002694849.1| PREDICTED: dynein, cytoplasmic, light interm... 632 0.0
Alignment gi|NP_001039517.1| cytoplasmic dynein 1 light intermediate chai... 448 e-126
Alignment gi|NP_001033140.1| cytoplasmic dynein 2 light intermediate chai... 52 1e-06
>ref|NP_001193081.1| cytoplasmic dynein 1 light intermediate chain 2 [Bos taurus].
Length = 492
Score = 632 bits (1629), Expect = 0.0
Identities = 307/315 (97%), Positives = 311/315 (98%)
Frame = +2
Query: 11 MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 190
MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF
Sbjct: 1 MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 60
Query: 191 GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLLK 370
GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLS+HDEDRDDHTRCNVWILDGDLYHKGLLK
Sbjct: 61 GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLK 120
Query: 371 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMKD 550
FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKF+KD
Sbjct: 121 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFVKD 180
Query: 551 FQDYIEPEEGSQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVL 730
FQDY+EPEEG QGSPQRRGPLTSGPDEENVALPLGDNVLTHNLG+PVLVVCTKCDAVSVL
Sbjct: 181 FQDYVEPEEGCQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVL 240
Query: 731 EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 910
EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA
Sbjct: 241 EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 300
Query: 911 LVVEKGTFFIPAGWD 955
LVVEK FIPAGWD
Sbjct: 301 LVVEKEAVFIPAGWD 315
>ref|XP_002694849.1| PREDICTED: dynein, cytoplasmic, light intermediate polypeptide
2-like [Bos taurus].
Length = 492
Score = 632 bits (1629), Expect = 0.0
Identities = 307/315 (97%), Positives = 311/315 (98%)
Frame = +2
Query: 11 MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 190
MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF
Sbjct: 1 MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 60
Query: 191 GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLLK 370
GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLS+HDEDRDDHTRCNVWILDGDLYHKGLLK
Sbjct: 61 GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLK 120
Query: 371 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMKD 550
FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKF+KD
Sbjct: 121 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFVKD 180
Query: 551 FQDYIEPEEGSQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVL 730
FQDY+EPEEG QGSPQRRGPLTSGPDEENVALPLGDNVLTHNLG+PVLVVCTKCDAVSVL
Sbjct: 181 FQDYVEPEEGCQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVL 240
Query: 731 EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 910
EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA
Sbjct: 241 EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 300
Query: 911 LVVEKGTFFIPAGWD 955
LVVEK FIPAGWD
Sbjct: 301 LVVEKEAVFIPAGWD 315
>ref|NP_001039517.1| cytoplasmic dynein 1 light intermediate chain 1 [Bos taurus].
Length = 524
Score = 448 bits (1152), Expect = e-126
Identities = 211/301 (70%), Positives = 253/301 (84%)
Frame = +2
Query: 53 NGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKL 232
+G AAAGD +E+GQ+LWS ILSEVSTR+RSKLP+GKN+L+ GEDG+GKT+L+ K+
Sbjct: 32 SGNGAAAAGD----DEDGQNLWSCILSEVSTRSRSKLPAGKNVLLLGEDGAGKTSLIRKI 87
Query: 233 QGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVI 412
QG E KKGRGLEYLYL++HDEDRDD TRCNVWILDGD YHKGLLKF++ A SL +TLV+
Sbjct: 88 QGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDPYHKGLLKFSLDAISLKDTLVM 147
Query: 413 FVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMKDFQDYIEPEEGSQGS 592
V DMS+PWT ++SLQKWASV+REHIDK+KIPPEEM+E+E+K ++DFQ+Y+EP E S
Sbjct: 148 LVVDMSKPWTALDSLQKWASVVREHIDKLKIPPEEMKEMEQKLVRDFQEYVEPGEDFPAS 207
Query: 593 PQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVLEKEHDYRDEHFDFI 772
PQRR + +++V LPLG + LT NLGVPVLVVCTKCDA+SVLEKEHDYRDEHFDFI
Sbjct: 208 PQRRSTASQEDRDDSVLLPLGADTLTQNLGVPVLVVCTKCDAISVLEKEHDYRDEHFDFI 267
Query: 773 QSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKGTFFIPAGW 952
QSH+R+FCLQYGAALIY SVKE KN+DL+YKYIV K YGF + PA+VVEK FIPAGW
Sbjct: 268 QSHIRKFCLQYGAALIYASVKENKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVFIPAGW 327
Query: 953 D 955
D
Sbjct: 328 D 328
>ref|NP_001033140.1| cytoplasmic dynein 2 light intermediate chain 1 [Bos taurus].
Length = 351
Score = 51.6 bits (122), Expect = 1e-06
Identities = 63/290 (21%), Positives = 115/290 (39%), Gaps = 7/290 (2%)
Frame = +2
Query: 107 QSLWSSILSEVSTRARSKLPSG------KNILVFGEDGSGKTTLMTK-LQGAEHGKKGRG 265
++LW +EV R S+ K++ G GKTT++ + L E K
Sbjct: 4 ETLWEIAKAEVEKRGSSENEGDGAEIGEKSVFFIGSKNGGKTTIILRCLDRDEPPKPTLA 63
Query: 266 LEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTV 445
LEY Y + W L G L+ +++++L ++ V D+S+P +
Sbjct: 64 LEYTYGRRTKGHNIPKDIAHFWELGGGTSLLDLISIPITSDTLRTFSIVLVLDLSKPNDL 123
Query: 446 MESLQKWASVLREHIDKMKIPPEEMRELERKFMKDFQDYIEPEEGSQGSPQRRGPLTSGP 625
+++ + +IDK+ + +L +K S+ + + R + S
Sbjct: 124 WPTMENLLQATKLNIDKV------IMKLGKK-------------NSKAASEMRQKMWSNM 164
Query: 626 DEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVLEKEHDYRDEHFDFIQSHLRRFCLQY 805
+++ D L +P++++ +K D D+ E I LR Y
Sbjct: 165 QKDH-----PDRELLDPFPIPLVIIGSKYDIF------QDFDSEKRKVICKTLRFVAHYY 213
Query: 806 GAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKGTFFIPAGWD 955
GA+L++TS K E L + I +G + + V + FI AG D
Sbjct: 214 GASLMFTS-KSEALLLKIRGVINQLAFGINKSKSICVDQNKPLFITAGLD 262
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,330,962
Number of extensions: 1008898
Number of successful extensions: 3794
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3789
Number of HSP's successfully gapped: 4
Length of query: 320
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 218
Effective length of database: 14,306,398
Effective search space: 3118794764
Effective search space used: 3118794764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013756
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013756
(961 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536823.2| PREDICTED: similar to Dynein light intermediate... 563 e-160
Alignment gi|XP_534236.2| PREDICTED: similar to dynein light chain-A [Can... 454 e-128
>ref|XP_536823.2| PREDICTED: similar to Dynein light intermediate chain 2, cytosolic
(LIC53/55) (LIC-2) [Canis familiaris].
Length = 481
Score = 563 bits (1450), Expect = e-160
Identities = 271/280 (96%), Positives = 275/280 (98%)
Frame = +2
Query: 116 WSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHD 295
WSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLS+HD
Sbjct: 25 WSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHD 84
Query: 296 EDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASV 475
EDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASV
Sbjct: 85 EDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASV 144
Query: 476 LREHIDKMKIPPEEMRELERKFMKDFQDYIEPEEGSQGSPQRRGPLTSGPDEENVALPLG 655
LREHIDKMKIPPEEMRELERKF+KDFQDYIEPEEG QGSPQRRGPLTSGPDEENVALPLG
Sbjct: 145 LREHIDKMKIPPEEMRELERKFVKDFQDYIEPEEGCQGSPQRRGPLTSGPDEENVALPLG 204
Query: 656 DNVLTHNLGVPVLVVCTKCDAVSVLEKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVK 835
DN+LTHNLG+PVLVVCTKCDAVSVLEKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVK
Sbjct: 205 DNMLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVK 264
Query: 836 EEKNLDLLYKYIVHKTYGFHFTTPALVVEKGTFFIPAGWD 955
EEKNLDLLYKYIVHKTYGFHF TPALVVEK FIPAGWD
Sbjct: 265 EEKNLDLLYKYIVHKTYGFHFVTPALVVEKDAVFIPAGWD 304
>ref|XP_534236.2| PREDICTED: similar to dynein light chain-A [Canis familiaris].
Length = 524
Score = 454 bits (1168), Expect = e-128
Identities = 217/320 (67%), Positives = 262/320 (81%), Gaps = 6/320 (1%)
Frame = +2
Query: 14 APVGVEKKLLLGP------NGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGK 175
+P G+ GP +G AAAGD +E+GQ+LWS ILSEVSTR+RSKLP+GK
Sbjct: 13 SPPGLASTYAGGPLANDLASGNGGAAAGD----DEDGQNLWSCILSEVSTRSRSKLPAGK 68
Query: 176 NILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYH 355
N+L+ GEDG+GKT+L+ K+QG E KKGRGLEYLYL++HDEDRDD TRCNVWILDGDLYH
Sbjct: 69 NVLLLGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYH 128
Query: 356 KGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELER 535
KGLLKF++ A SL +TLV+ V DMS+PWT ++SLQKWASV+REHIDK+KIPPEEM+E+E+
Sbjct: 129 KGLLKFSLDAISLKDTLVMLVVDMSKPWTALDSLQKWASVVREHIDKLKIPPEEMKEMEQ 188
Query: 536 KFMKDFQDYIEPEEGSQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCD 715
K ++DFQ+Y+EP E SPQRR + +++V LPLG + LTHNLG+PVLVVCTKCD
Sbjct: 189 KLIRDFQEYVEPGEDFPASPQRRNTGSQEDKDDSVVLPLGADTLTHNLGIPVLVVCTKCD 248
Query: 716 AVSVLEKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFH 895
A+SVLEKEHDYRDEHFDFIQSH+R+FCLQYGAALIYTSVKE KN+DL+YKYIV K YGF
Sbjct: 249 AISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFP 308
Query: 896 FTTPALVVEKGTFFIPAGWD 955
+ PA+VVEK FIPAGWD
Sbjct: 309 YKIPAVVVEKDAVFIPAGWD 328
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,894,490
Number of extensions: 1042144
Number of successful extensions: 4027
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4022
Number of HSP's successfully gapped: 2
Length of query: 320
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 217
Effective length of database: 15,440,896
Effective search space: 3350674432
Effective search space used: 3350674432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013756
(961 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230549.1| dynein, cytoplasmic 1, light intermediate ch... 636 0.0
Alignment gi|XP_003132140.2| PREDICTED: cytoplasmic dynein 1 light interm... 281 4e-76
Alignment gi|XP_003125235.1| PREDICTED: cytoplasmic dynein 2 light interm... 53 3e-07
>ref|NP_001230549.1| dynein, cytoplasmic 1, light intermediate chain 2 [Sus scrofa].
Length = 492
Score = 636 bits (1641), Expect = 0.0
Identities = 312/315 (99%), Positives = 312/315 (99%)
Frame = +2
Query: 11 MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 190
MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF
Sbjct: 1 MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 60
Query: 191 GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLLK 370
GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLLK
Sbjct: 61 GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLLK 120
Query: 371 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMKD 550
FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMKD
Sbjct: 121 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMKD 180
Query: 551 FQDYIEPEEGSQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVL 730
FQDYIEPEEGSQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVL
Sbjct: 181 FQDYIEPEEGSQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVL 240
Query: 731 EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 910
EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA
Sbjct: 241 EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 300
Query: 911 LVVEKGTFFIPAGWD 955
LVVEK FIPAGWD
Sbjct: 301 LVVEKEAVFIPAGWD 315
>ref|XP_003132140.2| PREDICTED: cytoplasmic dynein 1 light intermediate chain 1-like
[Sus scrofa].
Length = 378
Score = 281 bits (719), Expect = 4e-76
Identities = 127/182 (69%), Positives = 154/182 (84%)
Frame = +2
Query: 410 IFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMKDFQDYIEPEEGSQG 589
+ V DMS+PWT ++SLQKWASV+REHIDK+KIPPEEM+E+E+K ++DFQ+Y+EP E
Sbjct: 1 MLVVDMSKPWTALDSLQKWASVVREHIDKLKIPPEEMKEMEQKLIRDFQEYVEPGEDFPA 60
Query: 590 SPQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVLEKEHDYRDEHFDF 769
SPQRR ++ +++V LPLG + LT NLG+PVLVVCTKCDA+SVLEKEHDYRDEHFDF
Sbjct: 61 SPQRRNTVSQEDKDDSVVLPLGADTLTQNLGIPVLVVCTKCDAISVLEKEHDYRDEHFDF 120
Query: 770 IQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKGTFFIPAG 949
IQSH+R+FCLQYGAALIYTSVKE KN+DL+YKYIV K YGF + PA+VVEK FIPAG
Sbjct: 121 IQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIPAVVVEKDAVFIPAG 180
Query: 950 WD 955
WD
Sbjct: 181 WD 182
>ref|XP_003125235.1| PREDICTED: cytoplasmic dynein 2 light intermediate chain 1-like
isoform 1 [Sus scrofa].
Length = 351
Score = 52.8 bits (125), Expect = 3e-07
Identities = 63/290 (21%), Positives = 113/290 (38%), Gaps = 7/290 (2%)
Frame = +2
Query: 107 QSLWSSILSEVSTRARSKLPSG------KNILVFGEDGSGKTTLMTK-LQGAEHGKKGRG 265
++LW +EV R + K++ G GKTT++ + L E K
Sbjct: 4 ETLWEIAKAEVEKRGSNGSEGDGVEIGEKSVFFIGSKNGGKTTIILRCLDRDEPPKPTLA 63
Query: 266 LEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTV 445
LEY Y + W L G L+ +++++L V+ V D+S+P +
Sbjct: 64 LEYTYGRRAKGHNIPKDIAHFWELGGGTSLLDLISIPITSDTLRTFSVVLVLDLSKPNDL 123
Query: 446 MESLQKWASVLREHIDKMKIPPEEMRELERKFMKDFQDYIEPEEGSQGSPQRRGPLTSGP 625
+++ + H+DK+ + +L +K S+ + + R + S
Sbjct: 124 WPTMENLLQATKRHVDKV------IMKLGKK-------------NSKAASEMRQKIWSNM 164
Query: 626 DEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVLEKEHDYRDEHFDFIQSHLRRFCLQY 805
+++ D L +P++++ +K D D+ E I LR Y
Sbjct: 165 QKDH-----PDRELIDPFPIPLVIIGSKYDIF------QDFDSEKRKVICKTLRFVAHYY 213
Query: 806 GAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKGTFFIPAGWD 955
GA+L++TS K E L + I +G + V + FI AG D
Sbjct: 214 GASLMFTS-KSEALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLD 262
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,355,863
Number of extensions: 645212
Number of successful extensions: 2390
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2389
Number of HSP's successfully gapped: 3
Length of query: 320
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,879,129
Effective search space: 1962287509
Effective search space used: 1962287509
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013756
(961 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013398.2| cytoplasmic dynein 1 light intermediate chai... 614 e-176
Alignment gi|NP_666341.1| cytoplasmic dynein 1 light intermediate chain 1... 451 e-127
>ref|NP_001013398.2| cytoplasmic dynein 1 light intermediate chain 2 [Mus musculus].
Length = 492
Score = 614 bits (1584), Expect = e-176
Identities = 298/315 (94%), Positives = 307/315 (97%)
Frame = +2
Query: 11 MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 190
MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF
Sbjct: 1 MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 60
Query: 191 GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLLK 370
GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLS+HDEDRDDHTRCNVWILDGDLYHKGLLK
Sbjct: 61 GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLK 120
Query: 371 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMKD 550
FAVSAESL ETLVIFVADMSRPWT+MESLQKWASVLREHIDKMKIPPEEMR+LERKFMK+
Sbjct: 121 FAVSAESLRETLVIFVADMSRPWTIMESLQKWASVLREHIDKMKIPPEEMRDLERKFMKE 180
Query: 551 FQDYIEPEEGSQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVL 730
FQDYIEPEEG QGSPQRRGPLTSG DE++VALPLGDNVLTHNLG+PVLVVCTKCDA+SVL
Sbjct: 181 FQDYIEPEEGCQGSPQRRGPLTSGSDEDSVALPLGDNVLTHNLGIPVLVVCTKCDAMSVL 240
Query: 731 EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 910
EKEHDYRDEH DFIQ+HLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFT PA
Sbjct: 241 EKEHDYRDEHLDFIQAHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTIPA 300
Query: 911 LVVEKGTFFIPAGWD 955
LVVEK FIPAGWD
Sbjct: 301 LVVEKDAVFIPAGWD 315
>ref|NP_666341.1| cytoplasmic dynein 1 light intermediate chain 1 [Mus musculus].
Length = 523
Score = 451 bits (1160), Expect = e-127
Identities = 215/319 (67%), Positives = 262/319 (82%), Gaps = 5/319 (1%)
Frame = +2
Query: 14 APVGVEKKLLLGP--NGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILV 187
+P G+ GP N A + G ++E+GQ+LWS ILSEVSTR+RSKLP+GKN+L+
Sbjct: 13 SPPGLASTYASGPLANELASGSGGPAAGDDEDGQNLWSCILSEVSTRSRSKLPTGKNVLL 72
Query: 188 FGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLL 367
GEDG+GKT+L+ ++QG E KKGRGLEYLYL++HDEDRDD TRCNVWILDGDLYHKGLL
Sbjct: 73 LGEDGAGKTSLIRRIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLL 132
Query: 368 KFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMK 547
KF++ A SL +TLV+ V DMS+PWT ++SLQKWASV+REH+DK+KIPPEEM+E+E+K ++
Sbjct: 133 KFSLDALSLRDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKEMEQKLIR 192
Query: 548 DFQDYIEPEEGSQGSPQRRGPLTSGPDEE---NVALPLGDNVLTHNLGVPVLVVCTKCDA 718
DFQ+Y+EP E SPQRR T+G E+ +V LPLG + LTHNLG+PVLVVCTKCDA
Sbjct: 193 DFQEYVEPGEDFPASPQRR---TTGAQEDRGDSVVLPLGADTLTHNLGLPVLVVCTKCDA 249
Query: 719 VSVLEKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHF 898
+SVLEKEHDYRDEHFDFIQSH+R+FCLQYGAALIYTSVKE KN+DL+YKYIV K YGF +
Sbjct: 250 ISVLEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFPY 309
Query: 899 TTPALVVEKGTFFIPAGWD 955
PA+VVEK FIPAGWD
Sbjct: 310 KIPAVVVEKDAVFIPAGWD 328
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,640,013
Number of extensions: 862334
Number of successful extensions: 3287
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3286
Number of HSP's successfully gapped: 2
Length of query: 320
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 219
Effective length of database: 12,583,923
Effective search space: 2755879137
Effective search space used: 2755879137
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013756
(961 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006132.1| cytoplasmic dynein 1 light intermediate chain 2... 624 e-179
Alignment gi|NP_057225.2| cytoplasmic dynein 1 light intermediate chain 1... 457 e-129
>ref|NP_006132.1| cytoplasmic dynein 1 light intermediate chain 2 [Homo sapiens].
Length = 492
Score = 624 bits (1610), Expect = e-179
Identities = 304/315 (96%), Positives = 309/315 (98%)
Frame = +2
Query: 11 MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 190
MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF
Sbjct: 1 MAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILVF 60
Query: 191 GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLLK 370
GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLS+HDEDRDDHTRCNVWILDGDLYHKGLLK
Sbjct: 61 GEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLK 120
Query: 371 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMKD 550
FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPE+MRELERKF+KD
Sbjct: 121 FAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKD 180
Query: 551 FQDYIEPEEGSQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSVL 730
FQDY+EPEEG QGSPQRRGPLTSG DEENVALPLGDNVLTHNLG+PVLVVCTKCDAVSVL
Sbjct: 181 FQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVL 240
Query: 731 EKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 910
EKEHDYRDEH DFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA
Sbjct: 241 EKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPA 300
Query: 911 LVVEKGTFFIPAGWD 955
LVVEK FIPAGWD
Sbjct: 301 LVVEKDAVFIPAGWD 315
>ref|NP_057225.2| cytoplasmic dynein 1 light intermediate chain 1 [Homo sapiens].
Length = 523
Score = 457 bits (1175), Expect = e-129
Identities = 212/316 (67%), Positives = 261/316 (82%), Gaps = 2/316 (0%)
Frame = +2
Query: 14 APVGVEKKLLLGPNGPAVAAA--GDLTSEEEEGQSLWSSILSEVSTRARSKLPSGKNILV 187
+P G+ GP G +A+ G ++E+GQ+LWS ILSEVSTR+RSKLP+GKN+L+
Sbjct: 13 SPPGLSSTYTGGPLGNEIASGNGGAAAGDDEDGQNLWSCILSEVSTRSRSKLPAGKNVLL 72
Query: 188 FGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSIHDEDRDDHTRCNVWILDGDLYHKGLL 367
GEDG+GKT+L+ K+QG E KKGRGLEYLYL++HDEDRDD TRCNVWILDGDLYHKGLL
Sbjct: 73 LGEDGAGKTSLIRKIQGIEEYKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDLYHKGLL 132
Query: 368 KFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEEMRELERKFMK 547
KF++ A SL +TLV+ V DMS+PWT ++SLQKWASV+REH+DK+KIPPEEM+++E+K ++
Sbjct: 133 KFSLDAVSLKDTLVMLVVDMSKPWTALDSLQKWASVVREHVDKLKIPPEEMKQMEQKLIR 192
Query: 548 DFQDYIEPEEGSQGSPQRRGPLTSGPDEENVALPLGDNVLTHNLGVPVLVVCTKCDAVSV 727
DFQ+Y+EP E SPQRR + +++V LPLG + LTHNLG+PVLVVCTKCDA+SV
Sbjct: 193 DFQEYVEPGEDFPASPQRRNTASQEDKDDSVVLPLGADTLTHNLGIPVLVVCTKCDAISV 252
Query: 728 LEKEHDYRDEHFDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTP 907
LEKEHDYRDEHFDFIQSH+R+FCLQYGAALIYTSVKE KN+DL+YKYIV K YGF + P
Sbjct: 253 LEKEHDYRDEHFDFIQSHIRKFCLQYGAALIYTSVKENKNIDLVYKYIVQKLYGFPYKIP 312
Query: 908 ALVVEKGTFFIPAGWD 955
A+VVEK FIPAGWD
Sbjct: 313 AVVVEKDAVFIPAGWD 328
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,262,347
Number of extensions: 1022920
Number of successful extensions: 4018
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4003
Number of HSP's successfully gapped: 2
Length of query: 320
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 217
Effective length of database: 14,901,872
Effective search space: 3233706224
Effective search space used: 3233706224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013756
(961 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893319.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 337 7e-90
>gb|GL893319.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2096
Length = 35556
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 540 ttatgaaagattttcaagactatatcgagcctgaggaaggttctcaaggttccccacaga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttatgaaagattttcaagactatatcgagcctgaggaaggttctcaaggttccccacaga 332
Query: 600 gaagaggccctctgacctcaggtcctgatgaagaaaatgttgccctgcctcttggtgaca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaagaggccctctgacctcaggtcctgatgaagaaaatgttgccctgcctcttggtgaca 392
Query: 660 atgtgctgactcataacctgggggtccccgtattggtagtgtgcacaaag 709
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atgtgctgactcataacctgggggtccccgtattggtagtgtgcacaaag 442
Score = 246 bits (124), Expect = 2e-62
Identities = 133/136 (97%)
Strand = Plus / Plus
Query: 804 atggagcggccttgatttacacatcagtgaaggaagagaaaaacctcgacttgttgtata 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3455 atggagcggccttgatttacacatcagtgaaggaagagaaaaacctcgacttgttgtata 3514
Query: 864 agtacattgttcataaaacatacggtttccactttaccacgcctgccttagttgtggaaa 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3515 agtacattgttcataaaacatacggtttccactttaccacgcctgccttagttgtggaaa 3574
Query: 924 agggaacattttttat 939
||| | || |||||||
Sbjct: 3575 aggaagcagtttttat 3590
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 708 agtgtgatgcagtgagtgtcctggagaaggagcatgattacagggacgagcactttgact 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 agtgtgatgcagtgagtgtcctggagaaggagcatgattacagggacgagcactttgact 1848
Query: 768 tcatccagtcacacctacggaggttctgcctccagt 803
||||||||||||||||||||||||||||||||||||
Sbjct: 1849 tcatccagtcacacctacggaggttctgcctccagt 1884
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,834,348
Number of extensions: 189
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 3
Length of query: 961
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 940
Effective length of database: 2,808,413,156
Effective search space: 2639908366640
Effective search space used: 2639908366640
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)