Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013761
(938 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536015.2| PREDICTED: similar to CG9410-PA, isoform A [Can... 474 e-134
Alignment gi|XP_531633.2| PREDICTED: similar to CG9410-PA, isoform A [Can... 301 6e-82
>ref|XP_536015.2| PREDICTED: similar to CG9410-PA, isoform A [Canis familiaris].
Length = 351
Score = 474 bits (1221), Expect = e-134
Identities = 230/260 (88%), Positives = 242/260 (93%)
Frame = +1
Query: 22 RAVPSAWSQRRTGFGKMFVAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRNIRYLA 201
R VP A GFG+ +AAR+GQR LRK+VSGCRP +A A G PAPAQGP R++RYLA
Sbjct: 96 RLVPEA----AAGFGETIMAARSGQRALRKLVSGCRPTAAAAAGTPAPAQGPARHVRYLA 151
Query: 202 SCGILMNRTLPLHSSFLPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGM 381
SCGILM RTLPLH+S LPKEIYARTFF+IAAPLINKRKEYSERRIIGYSMQEMYDVVSGM
Sbjct: 152 SCGILMTRTLPLHTSILPKEIYARTFFKIAAPLINKRKEYSERRIIGYSMQEMYDVVSGM 211
Query: 382 EDYKHFVPWCKKSDVISRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLF 561
EDYKHFVPWCKKSDVIS+R+GYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLF
Sbjct: 212 EDYKHFVPWCKKSDVISKRTGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLF 271
Query: 562 NHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACK 741
NHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACK
Sbjct: 272 NHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACK 331
Query: 742 LYGPETSIPRELMLHEVHHT 801
LYGPET+IPRELMLHEVHHT
Sbjct: 332 LYGPETNIPRELMLHEVHHT 351
>ref|XP_531633.2| PREDICTED: similar to CG9410-PA, isoform A [Canis familiaris].
Length = 244
Score = 301 bits (771), Expect = 6e-82
Identities = 150/247 (60%), Positives = 183/247 (74%), Gaps = 6/247 (2%)
Frame = +1
Query: 79 AARTGQRTLRKVVSGCRPKSATATGV---PAPAQGPPRNIRYLASCGILMNRTLPLHSSF 249
+ R R++ G R + G PAP PPR +R+L C + LP +
Sbjct: 3 SGRMASAGARRLPGGTRAAAQRCCGFALRPAPPP-PPRPMRFLTPCSLF----LPRAARV 57
Query: 250 LPKEIY---ARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKS 420
L E+ +R+F AAP NKRK YSERRI+GYSMQEM++VVS +++Y+ FVPWCKKS
Sbjct: 58 LVAEVGLPPSRSFMGFAAPFTNKRKAYSERRIMGYSMQEMFEVVSNVQEYREFVPWCKKS 117
Query: 421 DVISRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGL 600
V+S R G+ K +LE+GFPP++ERYTS V++VKPH+VKA CTDGKLFNHLET+WRFSPG+
Sbjct: 118 LVVSSRKGHLKAQLEVGFPPIVERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGI 177
Query: 601 PGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELM 780
P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEVVKQ VAAFERRA +GPET+IPRELM
Sbjct: 178 PAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAIPRELM 237
Query: 781 LHEVHHT 801
HEVH T
Sbjct: 238 FHEVHQT 244
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,535,014
Number of extensions: 896543
Number of successful extensions: 2937
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2932
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 209
Effective length of database: 15,440,896
Effective search space: 3227147264
Effective search space used: 3227147264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013761
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013761
(938 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069122.1| coenzyme Q-binding protein COQ10 homolog B, ... 457 e-129
Alignment gi|NP_001069598.1| coenzyme Q-binding protein COQ10 homolog A, ... 300 2e-81
>ref|NP_001069122.1| coenzyme Q-binding protein COQ10 homolog B, mitochondrial [Bos
taurus].
Length = 244
Score = 457 bits (1177), Expect = e-129
Identities = 221/244 (90%), Positives = 230/244 (94%)
Frame = +1
Query: 70 MFVAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRNIRYLASCGILMNRTLPLHSSF 249
M +AAR GQR L+KVVSGC PKSA A PAPAQ P RN+ YLASCGILM+RTLPLH+S
Sbjct: 1 MIMAARIGQRALKKVVSGCCPKSAAAARAPAPAQVPARNVSYLASCGILMSRTLPLHTSV 60
Query: 250 LPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDVI 429
PK+I+ARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSD+I
Sbjct: 61 FPKKIHARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDII 120
Query: 430 SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY 609
SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY
Sbjct: 121 SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY 180
Query: 610 PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHE 789
PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMV AFERRACKLYGPET+IPRELMLHE
Sbjct: 181 PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVTAFERRACKLYGPETNIPRELMLHE 240
Query: 790 VHHT 801
VHHT
Sbjct: 241 VHHT 244
>ref|NP_001069598.1| coenzyme Q-binding protein COQ10 homolog A, mitochondrial [Bos
taurus].
Length = 243
Score = 300 bits (767), Expect = 2e-81
Identities = 148/239 (61%), Positives = 181/239 (75%), Gaps = 9/239 (3%)
Frame = +1
Query: 106 RKVVSGCRPKSATATGV---PAPAQGPPRNI---RYLASCGILMNRT---LPLHSSFLPK 258
R++ +G R + G+ PAP GPPR + R+ SC + R L S P
Sbjct: 7 RRLPAGTRAAARGCCGLSLRPAPPPGPPRPLGPMRFPISCSFFLPRAPQVLATESGLPP- 65
Query: 259 EIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDVISRR 438
+R+F AAP NKRK YSERRI+GYSMQEMY+VV+ +++Y+ FVPWCKKS V+S R
Sbjct: 66 ---SRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSR 122
Query: 439 SGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGYPRT 618
G+ K +LE+GFPPV+ERYTS V++VKPH+VKA CTDGKLFNHLET+WRFSPG+P YPRT
Sbjct: 123 KGHLKAQLEVGFPPVVERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRT 182
Query: 619 CTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHEVH 795
CT+DFSISFEFRSLLHSQLAT+FFDEVVK+ VAAFERRA +GPET++PRELM HEVH
Sbjct: 183 CTVDFSISFEFRSLLHSQLATIFFDEVVKKNVAAFERRAATKFGPETAVPRELMFHEVH 241
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,126,991
Number of extensions: 876535
Number of successful extensions: 2884
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2875
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,306,398
Effective search space: 3004343580
Effective search space used: 3004343580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013761
(938 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928809.1| PREDICTED: coenzyme Q-binding protein COQ10 ... 501 e-142
Alignment gi|XP_003133609.1| PREDICTED: coenzyme Q-binding protein COQ10 ... 376 e-105
Alignment gi|XP_003355520.1| PREDICTED: coenzyme Q-binding protein COQ10 ... 303 9e-83
Alignment gi|XP_003126315.1| PREDICTED: coenzyme Q-binding protein COQ10 ... 303 9e-83
Alignment gi|XP_003126316.1| PREDICTED: coenzyme Q-binding protein COQ10 ... 258 3e-69
>ref|XP_001928809.1| PREDICTED: coenzyme Q-binding protein COQ10 homolog B,
mitochondrial isoform 1 [Sus scrofa].
Length = 244
Score = 501 bits (1290), Expect = e-142
Identities = 244/244 (100%), Positives = 244/244 (100%)
Frame = +1
Query: 70 MFVAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRNIRYLASCGILMNRTLPLHSSF 249
MFVAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRNIRYLASCGILMNRTLPLHSSF
Sbjct: 1 MFVAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRNIRYLASCGILMNRTLPLHSSF 60
Query: 250 LPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDVI 429
LPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDVI
Sbjct: 61 LPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDVI 120
Query: 430 SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY 609
SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY
Sbjct: 121 SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY 180
Query: 610 PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHE 789
PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHE
Sbjct: 181 PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHE 240
Query: 790 VHHT 801
VHHT
Sbjct: 241 VHHT 244
>ref|XP_003133609.1| PREDICTED: coenzyme Q-binding protein COQ10 homolog B,
mitochondrial isoform 2 [Sus scrofa].
Length = 194
Score = 376 bits (966), Expect = e-105
Identities = 193/244 (79%), Positives = 193/244 (79%)
Frame = +1
Query: 70 MFVAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRNIRYLASCGILMNRTLPLHSSF 249
MFVAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRN
Sbjct: 1 MFVAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRN--------------------- 39
Query: 250 LPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDVI 429
I YSMQEMYDVVSGMEDYKHFVPWCKKSDVI
Sbjct: 40 -----------------------------IRYSMQEMYDVVSGMEDYKHFVPWCKKSDVI 70
Query: 430 SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY 609
SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY
Sbjct: 71 SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY 130
Query: 610 PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHE 789
PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHE
Sbjct: 131 PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHE 190
Query: 790 VHHT 801
VHHT
Sbjct: 191 VHHT 194
>ref|XP_003355520.1| PREDICTED: coenzyme Q-binding protein COQ10 homolog A,
mitochondrial-like [Sus scrofa].
Length = 243
Score = 303 bits (776), Expect = 9e-83
Identities = 151/247 (61%), Positives = 181/247 (73%), Gaps = 7/247 (2%)
Frame = +1
Query: 82 ARTGQRTL----RKVVSGCRPKSATATGVPAPAQGPPRNIRYLASCGILMNRT---LPLH 240
A G R L R GC S P P + PP +R+L SC + + R L
Sbjct: 2 ASAGARRLPAGTRAAARGCGGFSVRPAPPPGPLR-PPGPMRFLMSCSLFLPRAVQVLAAE 60
Query: 241 SSFLPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKS 420
+ P+ R+F AAP NKRK YSERRI+GYSMQEMY+VV+ +++Y+ FVPWCKKS
Sbjct: 61 ADLSPR----RSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVANVQEYREFVPWCKKS 116
Query: 421 DVISRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGL 600
V+S R G+ K +LE+GFPPV+ERYTS V++VKPH+VKA CTDGKLFNHLET+WRFSPG+
Sbjct: 117 LVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGI 176
Query: 601 PGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELM 780
P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEVVKQ VAAFERRA +GPET++PRELM
Sbjct: 177 PAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAVPRELM 236
Query: 781 LHEVHHT 801
HEVH T
Sbjct: 237 FHEVHQT 243
>ref|XP_003126315.1| PREDICTED: coenzyme Q-binding protein COQ10 homolog A,
mitochondrial isoform 1 [Sus scrofa].
Length = 243
Score = 303 bits (776), Expect = 9e-83
Identities = 151/247 (61%), Positives = 181/247 (73%), Gaps = 7/247 (2%)
Frame = +1
Query: 82 ARTGQRTL----RKVVSGCRPKSATATGVPAPAQGPPRNIRYLASCGILMNRT---LPLH 240
A G R L R GC S P P + PP +R+L SC + + R L
Sbjct: 2 ASAGARRLPAGTRAAARGCGGFSVRPAPPPGPLR-PPGPMRFLMSCSLFLPRAVQVLAAE 60
Query: 241 SSFLPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKS 420
+ P+ R+F AAP NKRK YSERRI+GYSMQEMY+VV+ +++Y+ FVPWCKKS
Sbjct: 61 AGLSPR----RSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVANVQEYREFVPWCKKS 116
Query: 421 DVISRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGL 600
V+S R G+ K +LE+GFPPV+ERYTS V++VKPH+VKA CTDGKLFNHLET+WRFSPG+
Sbjct: 117 LVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGI 176
Query: 601 PGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELM 780
P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEVVKQ VAAFERRA +GPET++PRELM
Sbjct: 177 PAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAVPRELM 236
Query: 781 LHEVHHT 801
HEVH T
Sbjct: 237 FHEVHQT 243
>ref|XP_003126316.1| PREDICTED: coenzyme Q-binding protein COQ10 homolog A,
mitochondrial isoform 2 [Sus scrofa].
Length = 194
Score = 258 bits (660), Expect = 3e-69
Identities = 116/153 (75%), Positives = 137/153 (89%)
Frame = +1
Query: 343 YSMQEMYDVVSGMEDYKHFVPWCKKSDVISRRSGYCKTRLEIGFPPVLERYTSVVTLVKP 522
YSMQEMY+VV+ +++Y+ FVPWCKKS V+S R G+ K +LE+GFPPV+ERYTS V++VKP
Sbjct: 42 YSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKP 101
Query: 523 HLVKASCTDGKLFNHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVV 702
H+VKA CTDGKLFNHLET+WRFSPG+P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEVV
Sbjct: 102 HMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVV 161
Query: 703 KQMVAAFERRACKLYGPETSIPRELMLHEVHHT 801
KQ VAAFERRA +GPET++PRELM HEVH T
Sbjct: 162 KQNVAAFERRAATKFGPETAVPRELMFHEVHQT 194
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,891,155
Number of extensions: 558296
Number of successful extensions: 1840
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1835
Number of HSP's successfully gapped: 6
Length of query: 312
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 213
Effective length of database: 8,879,129
Effective search space: 1891254477
Effective search space used: 1891254477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013761
(938 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034799.1| coenzyme Q-binding protein COQ10 homolog B, ... 434 e-122
Alignment gi|NP_080700.3| coenzyme Q-binding protein COQ10 homolog B, mit... 335 4e-92
Alignment gi|NP_001074509.1| coenzyme Q-binding protein COQ10 homolog A, ... 299 2e-81
>ref|NP_001034799.1| coenzyme Q-binding protein COQ10 homolog B, mitochondrial isoform 1
[Mus musculus].
Length = 242
Score = 434 bits (1116), Expect = e-122
Identities = 206/244 (84%), Positives = 227/244 (93%)
Frame = +1
Query: 70 MFVAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRNIRYLASCGILMNRTLPLHSSF 249
M +AART QR L +V SGC PKS T T APA+G R++R+LA+CG+L+NRTLP ++
Sbjct: 1 MIMAARTSQRALARVASGCHPKSTTVT--EAPARGSARDVRHLAACGVLINRTLPPCAAV 58
Query: 250 LPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDVI 429
LPKEI ARTFFRI+APL+NKRKEYSERRI+GYSMQEMYDVVSGMEDY+HFVPWCKKSD+I
Sbjct: 59 LPKEICARTFFRISAPLVNKRKEYSERRILGYSMQEMYDVVSGMEDYQHFVPWCKKSDII 118
Query: 430 SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY 609
SRRSGYCKTRLE+GFPPVLERYTS+VTLVKPHLVKASCTDGKLFNHLET+WRFSPGLPGY
Sbjct: 119 SRRSGYCKTRLEVGFPPVLERYTSIVTLVKPHLVKASCTDGKLFNHLETIWRFSPGLPGY 178
Query: 610 PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHE 789
PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPET+IPRELMLHE
Sbjct: 179 PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETNIPRELMLHE 238
Query: 790 VHHT 801
+HHT
Sbjct: 239 IHHT 242
>ref|NP_080700.3| coenzyme Q-binding protein COQ10 homolog B, mitochondrial isoform 2
[Mus musculus].
Length = 192
Score = 335 bits (858), Expect = 4e-92
Identities = 169/244 (69%), Positives = 181/244 (74%)
Frame = +1
Query: 70 MFVAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRNIRYLASCGILMNRTLPLHSSF 249
M +AART QR L +V SGC PKS T T APA+G R++R
Sbjct: 1 MIMAARTSQRALARVASGCHPKSTTVT--EAPARGSARDVR------------------- 39
Query: 250 LPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDVI 429
YSMQEMYDVVSGMEDY+HFVPWCKKSD+I
Sbjct: 40 -------------------------------YSMQEMYDVVSGMEDYQHFVPWCKKSDII 68
Query: 430 SRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGY 609
SRRSGYCKTRLE+GFPPVLERYTS+VTLVKPHLVKASCTDGKLFNHLET+WRFSPGLPGY
Sbjct: 69 SRRSGYCKTRLEVGFPPVLERYTSIVTLVKPHLVKASCTDGKLFNHLETIWRFSPGLPGY 128
Query: 610 PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHE 789
PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPET+IPRELMLHE
Sbjct: 129 PRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETNIPRELMLHE 188
Query: 790 VHHT 801
+HHT
Sbjct: 189 IHHT 192
>ref|NP_001074509.1| coenzyme Q-binding protein COQ10 homolog A, mitochondrial [Mus
musculus].
Length = 259
Score = 299 bits (765), Expect = 2e-81
Identities = 150/239 (62%), Positives = 179/239 (74%), Gaps = 13/239 (5%)
Frame = +1
Query: 124 CRPKSATATGVPAPAQGPPRNIRYLASCGILMNRTLPLHSSFLPKEI---YARTFFRIAA 294
CR + T P P + PPR +R+L SC + LP + L E ++R+F AA
Sbjct: 26 CRGARSVPTPPPGPPR-PPRPMRFLISCNLF----LPRAAQALAAEAGLPHSRSFMGFAA 80
Query: 295 PLINKRKEYSERRIIG----------YSMQEMYDVVSGMEDYKHFVPWCKKSDVISRRSG 444
P NKRK YSERRI+G YSMQEM++VVS +++Y+ FVPWCKKS V+S R G
Sbjct: 81 PFTNKRKAYSERRIMGSSASDSSCCRYSMQEMFEVVSNVQEYREFVPWCKKSLVVSSRKG 140
Query: 445 YCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGYPRTCT 624
+ K +LE+GFPPVLERYTS V++VKPH+VKA CTDGKLFNHLET+WRFSPG+P YPRTCT
Sbjct: 141 HLKAQLEVGFPPVLERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPSYPRTCT 200
Query: 625 LDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHEVHHT 801
+DFSISFEFRSLLHSQLAT+FFDEVVKQ VAAFERRA +GPET+IPRELM HEVH T
Sbjct: 201 VDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAIPRELMFHEVHQT 259
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,998,078
Number of extensions: 765254
Number of successful extensions: 2449
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2440
Number of HSP's successfully gapped: 4
Length of query: 312
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 211
Effective length of database: 12,583,923
Effective search space: 2655207753
Effective search space used: 2655207753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013761
(938 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079423.1| coenzyme Q-binding protein COQ10 homolog B, mit... 446 e-125
Alignment gi|NP_653177.3| coenzyme Q-binding protein COQ10 homolog A, mit... 309 3e-84
Alignment gi|NP_001092807.1| coenzyme Q-binding protein COQ10 homolog A, ... 296 2e-80
>ref|NP_079423.1| coenzyme Q-binding protein COQ10 homolog B, mitochondrial precursor
[Homo sapiens].
Length = 238
Score = 446 bits (1146), Expect = e-125
Identities = 217/242 (89%), Positives = 228/242 (94%)
Frame = +1
Query: 76 VAARTGQRTLRKVVSGCRPKSATATGVPAPAQGPPRNIRYLASCGILMNRTLPLHSSFLP 255
+AARTG LR+VVSGCRPKSATA G AQ P RN RYLASCGILM+RTLPLH+S LP
Sbjct: 1 MAARTGHTALRRVVSGCRPKSATAAG----AQAPVRNGRYLASCGILMSRTLPLHTSILP 56
Query: 256 KEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDVISR 435
KEI ARTFF+I APLINKRKEYSERRI+GYSMQEMYDVVSG+EDYKHFVPWCKKSDVIS+
Sbjct: 57 KEICARTFFKITAPLINKRKEYSERRILGYSMQEMYDVVSGVEDYKHFVPWCKKSDVISK 116
Query: 436 RSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGYPR 615
RSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDG+LFNHLET+WRFSPGLPGYPR
Sbjct: 117 RSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPR 176
Query: 616 TCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHEVH 795
TCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPET+IPRELMLHEVH
Sbjct: 177 TCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETNIPRELMLHEVH 236
Query: 796 HT 801
HT
Sbjct: 237 HT 238
>ref|NP_653177.3| coenzyme Q-binding protein COQ10 homolog A, mitochondrial isoform a
[Homo sapiens].
Length = 247
Score = 309 bits (791), Expect = 3e-84
Identities = 152/237 (64%), Positives = 182/237 (76%), Gaps = 5/237 (2%)
Frame = +1
Query: 106 RKVVSGCRPKSATATGVPAPAQGP---PRNIRYLASCGILMNRTLPLHSSF--LPKEIYA 270
R C S + PAP GP PR +R+L SC +L+ R + ++ LP +
Sbjct: 14 RAAAERCCRLSLSPGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLPS---S 70
Query: 271 RTFFRIAAPLINKRKEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDVISRRSGYC 450
R+F AAP NKRK YSERRI+GYSMQEMY+VVS +++Y+ FVPWCKKS V+S R G+
Sbjct: 71 RSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKKSLVVSSRKGHL 130
Query: 451 KTRLEIGFPPVLERYTSVVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGYPRTCTLD 630
K +LE+GFPPV+ERYTS V++VKPH+VKA CTDGKLFNHLET+WRFSPG+P YPRTCT+D
Sbjct: 131 KAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVD 190
Query: 631 FSISFEFRSLLHSQLATLFFDEVVKQMVAAFERRACKLYGPETSIPRELMLHEVHHT 801
FSISFEFRSLLHSQLAT+FFDEVVKQ VAAFERRA +GPET+IPRELM HEVH T
Sbjct: 191 FSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAIPRELMFHEVHQT 247
>ref|NP_001092807.1| coenzyme Q-binding protein COQ10 homolog A, mitochondrial isoform b
[Homo sapiens].
Length = 215
Score = 296 bits (757), Expect = 2e-80
Identities = 141/205 (68%), Positives = 169/205 (82%), Gaps = 2/205 (0%)
Frame = +1
Query: 193 YLASCGILMNRTLPLHSSF--LPKEIYARTFFRIAAPLINKRKEYSERRIIGYSMQEMYD 366
+L SC +L+ R + ++ LP +R+F AAP NKRK YSERRI+GYSMQEMY+
Sbjct: 14 FLTSCSLLLPRAAQILAAEAGLPS---SRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYE 70
Query: 367 VVSGMEDYKHFVPWCKKSDVISRRSGYCKTRLEIGFPPVLERYTSVVTLVKPHLVKASCT 546
VVS +++Y+ FVPWCKKS V+S R G+ K +LE+GFPPV+ERYTS V++VKPH+VKA CT
Sbjct: 71 VVSNVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCT 130
Query: 547 DGKLFNHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLATLFFDEVVKQMVAAFE 726
DGKLFNHLET+WRFSPG+P YPRTCT+DFSISFEFRSLLHSQLAT+FFDEVVKQ VAAFE
Sbjct: 131 DGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFE 190
Query: 727 RRACKLYGPETSIPRELMLHEVHHT 801
RRA +GPET+IPRELM HEVH T
Sbjct: 191 RRAATKFGPETAIPRELMFHEVHQT 215
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,998,175
Number of extensions: 889039
Number of successful extensions: 2904
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2897
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,934,836
Effective search space: 3136315560
Effective search space used: 3136315560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013761
(938 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 599 e-168
Sscrofa_Chr05 60 2e-06
>Sscrofa_Chr15
|| Length = 157681621
Score = 599 bits (302), Expect = e-168
Identities = 302/302 (100%)
Strand = Plus / Plus
Query: 637 atttcttttgaatttcgatcacttctgcactctcagcttgccacattgttttttgatgaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112527701 atttcttttgaatttcgatcacttctgcactctcagcttgccacattgttttttgatgaa 112527760
Query: 697 gttgtgaagcagatggtagctgcttttgaaagaagagcatgtaaactgtatggtccagaa 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112527761 gttgtgaagcagatggtagctgcttttgaaagaagagcatgtaaactgtatggtccagaa 112527820
Query: 757 acaagtatacctcgggaattaatgcttcatgaagttcatcacacataagagaaaaggaaa 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112527821 acaagtatacctcgggaattaatgcttcatgaagttcatcacacataagagaaaaggaaa 112527880
Query: 817 tggttgcctacttgtaactagtttattcacttttaggaagtgctttcatcattttgcttt 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112527881 tggttgcctacttgtaactagtttattcacttttaggaagtgctttcatcattttgcttt 112527940
Query: 877 cagaaggcagaaagcatttgtcaaacacagctttgattataaacctgtactttgcacttg 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112527941 cagaaggcagaaagcatttgtcaaacacagctttgattataaacctgtactttgcacttg 112528000
Query: 937 ga 938
||
Sbjct: 112528001 ga 112528002
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 341 gatattctatgcaggaaatgtatgacgtagtatcgggaatggaagattacaagcattttg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112522893 gatattctatgcaggaaatgtatgacgtagtatcgggaatggaagattacaagcattttg 112522952
Query: 401 tgccttggtgcaaaaaatcagatgtaatatcaaggagatctggatactgcaaaacacgat 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112522953 tgccttggtgcaaaaaatcagatgtaatatcaaggagatctggatactgcaaaacacgat 112523012
Query: 461 tagaaattgggtttccacccgtattggagcgctatacgtcagtagtaaccttggtgaaac 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112523013 tagaaattgggtttccacccgtattggagcgctatacgtcagtagtaaccttggtgaaac 112523072
Query: 521 cacatttggtaaagg 535
|||||||||||||||
Sbjct: 112523073 cacatttggtaaagg 112523087
Score = 363 bits (183), Expect = 1e-97
Identities = 189/191 (98%)
Strand = Plus / Plus
Query: 1 gaaggtcgggccccgttaaggagggcggtgccgtctgcctggtcccagaggcgcaccggc 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112512226 gaaggtcgggccccgggaaggagggcggtgccgtctgcctggtcccagaggcgcaccggc 112512285
Query: 61 ttcggtaagatgtttgtggcagctcggacaggccagagaaccttgagaaaggtggtctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112512286 ttcggtaagatgtttgtggcagctcggacaggccagagaaccttgagaaaggtggtctcg 112512345
Query: 121 ggatgccgtccaaaatcggcgacagcgaccggagtcccggctcctgcgcaggggcctccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112512346 ggatgccgtccaaaatcggcgacagcgaccggagtcccggctcctgcgcaggggcctccg 112512405
Query: 181 cggaacatcag 191
|||||||||||
Sbjct: 112512406 cggaacatcag 112512416
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 190 agatacttagcttcctgtggtatactgatgaacagaactcttccactgcattcctcattt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112516101 agatacttagcttcctgtggtatactgatgaacagaactcttccactgcattcctcattt 112516160
Query: 250 ttgcctaaggagatatatgcaagaaccttcttcagaattgctgcaccattaataaacaaa 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112516161 ttgcctaaggagatatatgcaagaaccttcttcagaattgctgcaccattaataaacaaa 112516220
Query: 310 agaaaagaatattcagagaggagaattatagg 341
||||||||||||||||||||||||||||||||
Sbjct: 112516221 agaaaagaatattcagagaggagaattatagg 112516252
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 533 aggcatcctgtacagatgggaagctctttaatcacttagagactgtttggcgttttagcc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112524555 aggcatcctgtacagatgggaagctctttaatcacttagagactgtttggcgttttagcc 112524614
Query: 593 caggtcttcctggctacccaagaacttgtactttggatttttca 636
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112524615 caggtcttcctggctacccaagaacttgtactttggatttttca 112524658
>Sscrofa_Chr05
|| Length = 111506441
Score = 60.0 bits (30), Expect = 2e-06
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 547 gatgggaagctctttaatcacttagagactgtttggcgttttagcccaggtcttcctggc 606
||||| |||||||| || ||||||||||| ||||||| || ||||| ||| |||||| |
Sbjct: 23159142 gatggcaagctcttcaaccacttagagaccatttggcggttcagccctggtattcctgcc 23159201
Query: 607 tacccaagaacttgtactttggatttttca 636
|| || |||||||| ||| |||| ||||||
Sbjct: 23159202 tatccgagaacttgcactgtggacttttca 23159231
Score = 60.0 bits (30), Expect = 2e-06
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 637 atttcttttgaatttcgatcacttctgcactctcagcttgccacattgttttttgatgaa 696
||||| ||||||||||| || || |||||||| ||||| ||||| |||||||||||||
Sbjct: 23159526 atttcctttgaatttcgttctctgctgcactcccagctggccaccatgttttttgatgag 23159585
Query: 697 gttgtgaagcagatggtagctgcttt 722
||||| || |||| || ||||||||
Sbjct: 23159586 gttgtcaaacagaatgtcgctgcttt 23159611
Score = 60.0 bits (30), Expect = 2e-06
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 637 atttcttttgaatttcgatcacttctgcactctcagcttgccacattgttttttgatgaa 696
||||| ||||||||||| || || |||||||| ||||| ||||| |||||||||||||
Sbjct: 23175551 atttcctttgaatttcgttctctgctgcactcccagctggccaccatgttttttgatgag 23175492
Query: 697 gttgtgaagcagatggtagctgcttt 722
||||| || |||| || ||||||||
Sbjct: 23175491 gttgtcaaacagaatgtcgctgcttt 23175466
Score = 60.0 bits (30), Expect = 2e-06
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 547 gatgggaagctctttaatcacttagagactgtttggcgttttagcccaggtcttcctggc 606
||||| |||||||| || ||||||||||| ||||||| || ||||| ||| |||||| |
Sbjct: 23175934 gatggcaagctcttcaaccacttagagaccatttggcggttcagccctggtattcctgcc 23175875
Query: 607 tacccaagaacttgtactttggatttttca 636
|| || |||||||| ||| |||| ||||||
Sbjct: 23175874 tatccgagaacttgcactgtggacttttca 23175845
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,061,272
Number of extensions: 297
Number of successful extensions: 297
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 9
Length of query: 938
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 917
Effective length of database: 2,808,413,156
Effective search space: 2575314864052
Effective search space used: 2575314864052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)