Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013763
(894 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776996.2| platelet endothelial cell adhesion molecule pre... 332 3e-91
>ref|NP_776996.2| platelet endothelial cell adhesion molecule precursor [Bos taurus].
Length = 738
Score = 332 bits (851), Expect = 3e-91
Identities = 167/233 (71%), Positives = 185/233 (79%)
Frame = +1
Query: 196 MRLRWTQGGNMWLGVLLTLQLCSSLEGQENSFTINSIHMEMLPGQEVHNGENLTLQCIVD 375
M+LRWTQ G MWLG LLTL LCSSL+GQENSFTINSIHM++LP V NGENLTLQC+VD
Sbjct: 1 MQLRWTQRGMMWLGALLTLLLCSSLKGQENSFTINSIHMQILPHSTVQNGENLTLQCLVD 60
Query: 376 VSTTSSVKPQHQVLFYKDDVLFHNVSSTKNTESYFISEARVYNSGRYKCTVILNNKEKTT 555
VSTTS VKP HQVLFYKDDVL HNVSS +NTESY I RV +SGRYKCTVILNNKEKTT
Sbjct: 61 VSTTSRVKPLHQVLFYKDDVLLHNVSSRRNTESYLIPHVRVCDSGRYKCTVILNNKEKTT 120
Query: 556 AEYKVVVEGVSNPRVTLDXXXXXXXXXXXXTCSVPEEKPPVHFIIEKFELNVRDVKQRRE 735
EY+V V+GVS+PRVTLD CSVPEEK PVHF IEKFELN+R K++RE
Sbjct: 121 PEYEVWVKGVSDPRVTLDKKEVIEGGVVVVNCSVPEEKAPVHFTIEKFELNIRGAKKKRE 180
Query: 736 KTANNQNSVTLEFTVEEQDRVILFSCQANVIFGTRVEISDSVRSDLVTVRESF 894
KT+ NQN VTLEFTVEEQDR I F CQA + G+ VE S ++SDLVTVRESF
Sbjct: 181 KTSQNQNFVTLEFTVEEQDRTIRFQCQAKIFSGSNVESSRPIQSDLVTVRESF 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,232,189
Number of extensions: 879829
Number of successful extensions: 3337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3327
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 196
Effective length of database: 14,306,398
Effective search space: 2804054008
Effective search space used: 2804054008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013763
(894 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853419.1| PREDICTED: similar to platelet/endothelial cell... 325 5e-89
>ref|XP_853419.1| PREDICTED: similar to platelet/endothelial cell adhesion molecule
(CD31 antigen) [Canis familiaris].
Length = 738
Score = 325 bits (832), Expect = 5e-89
Identities = 158/233 (67%), Positives = 185/233 (79%)
Frame = +1
Query: 196 MRLRWTQGGNMWLGVLLTLQLCSSLEGQENSFTINSIHMEMLPGQEVHNGENLTLQCIVD 375
M+L WTQ G MWLG LL L LC SLEGQENSFTIN IHME+LPG+EV NGEN+TLQCIVD
Sbjct: 1 MQLEWTQEGKMWLGALLILLLCPSLEGQENSFTINDIHMEILPGEEVQNGENMTLQCIVD 60
Query: 376 VSTTSSVKPQHQVLFYKDDVLFHNVSSTKNTESYFISEARVYNSGRYKCTVILNNKEKTT 555
+STTS +KPQH VLFYKDDVLFHNVSS +NTESYFI ARVY++G YKCTVILNNKEKT+
Sbjct: 61 ISTTSHIKPQHWVLFYKDDVLFHNVSSVENTESYFIPRARVYDAGTYKCTVILNNKEKTS 120
Query: 556 AEYKVVVEGVSNPRVTLDXXXXXXXXXXXXTCSVPEEKPPVHFIIEKFELNVRDVKQRRE 735
EY+V V+GVS+P VTLD CSVPEEKPP+HF IEK +L+ + KQ+RE
Sbjct: 121 LEYQVWVKGVSDPIVTLDKKEAIEGGVVKVNCSVPEEKPPIHFTIEKLKLDTKGFKQKRE 180
Query: 736 KTANNQNSVTLEFTVEEQDRVILFSCQANVIFGTRVEISDSVRSDLVTVRESF 894
KT+ N+N + LEFTVEEQD VI F CQA +I GT +E S +++S+LVTV ESF
Sbjct: 181 KTSPNRNFMMLEFTVEEQDHVIFFQCQARIISGTHMETSRAIKSELVTVTESF 233
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,636,648
Number of extensions: 907178
Number of successful extensions: 3373
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3368
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 196
Effective length of database: 15,474,232
Effective search space: 3032949472
Effective search space used: 3032949472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013763
(894 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999072.1| platelet endothelial cell adhesion molecule pre... 438 e-123
Alignment gi|XP_003358927.1| PREDICTED: cell adhesion molecule 2-like [Su... 48 8e-06
>ref|NP_999072.1| platelet endothelial cell adhesion molecule precursor [Sus scrofa].
Length = 740
Score = 438 bits (1126), Expect = e-123
Identities = 221/233 (94%), Positives = 221/233 (94%)
Frame = +1
Query: 196 MRLRWTQGGNMWLGVLLTLQLCSSLEGQENSFTINSIHMEMLPGQEVHNGENLTLQCIVD 375
MRLRWTQGGNMWLGVLLTLQLCSSLEGQENSFTINSIHMEMLPGQEVHNGENLTLQCIVD
Sbjct: 1 MRLRWTQGGNMWLGVLLTLQLCSSLEGQENSFTINSIHMEMLPGQEVHNGENLTLQCIVD 60
Query: 376 VSTTSSVKPQHQVLFYKDDVLFHNVSSTKNTESYFISEARVYNSGRYKCTVILNNKEKTT 555
VSTTSSVKPQHQVLFYKDDVLFHNVSSTKNTESYFISEARVYNSGRYKCTVILNNKEKTT
Sbjct: 61 VSTTSSVKPQHQVLFYKDDVLFHNVSSTKNTESYFISEARVYNSGRYKCTVILNNKEKTT 120
Query: 556 AEYKVVVEGVSNPRVTLDXXXXXXXXXXXXTCSVPEEKPPVHFIIEKFELNVRDVKQRRE 735
AEYKVVVEGVSNPRVTLD TCSVPEEKPPVHFIIEKFELNVRDVKQRRE
Sbjct: 121 AEYKVVVEGVSNPRVTLDKKEVIEGGVVKVTCSVPEEKPPVHFIIEKFELNVRDVKQRRE 180
Query: 736 KTANNQNSVTLEFTVEEQDRVILFSCQANVIFGTRVEISDSVRSDLVTVRESF 894
KTANNQNSVTLEFTVEEQDRVILFSCQANVIFGTRVEISDSVRSDLVTVRESF
Sbjct: 181 KTANNQNSVTLEFTVEEQDRVILFSCQANVIFGTRVEISDSVRSDLVTVRESF 233
>ref|XP_003358927.1| PREDICTED: cell adhesion molecule 2-like [Sus scrofa].
Length = 311
Score = 47.8 bits (112), Expect = 8e-06
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 11/174 (6%)
Frame = +1
Query: 334 VHNGENLTLQCIVDVSTTSSVK---PQHQVLFYKD-----DVLFHNVSSTKNTESYFISE 489
V G L C VD + +S++ P Q L++ D D V ++ + S +S+
Sbjct: 20 VVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSD 79
Query: 490 ARVYNSGRYKCTVILNNKEKTTAEYKVVVEGVSNPRVTLDXXXXXXXXXXXXTCSVPEEK 669
+ + G+Y C+ + KT+ Y V+ P+++ TC K
Sbjct: 80 VSLSDEGQYTCS-LFTMPVKTSKAYLTVLGVPEKPQISGFSSPVMEGDLMQLTCKTSGSK 138
Query: 670 PPVHFIIEKFELNVRDVKQRREKTANNQN---SVTLEFTVEEQDRVILFSCQAN 822
P K + ++DVK +E+ AN + S TL+F V+ D + C+ +
Sbjct: 139 PAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAVICRVD 192
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,417,613
Number of extensions: 566774
Number of successful extensions: 2238
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2228
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,904,026
Effective search space: 1780805200
Effective search space used: 1780805200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013763
(894 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001027550.1| platelet endothelial cell adhesion molecule ... 248 6e-66
Alignment gi|NP_032842.2| platelet endothelial cell adhesion molecule iso... 248 6e-66
>ref|NP_001027550.1| platelet endothelial cell adhesion molecule isoform 2 [Mus
musculus].
Length = 697
Score = 248 bits (632), Expect = 6e-66
Identities = 123/223 (55%), Positives = 166/223 (74%)
Frame = +1
Query: 226 MWLGVLLTLQLCSSLEGQENSFTINSIHMEMLPGQEVHNGENLTLQCIVDVSTTSSVKPQ 405
M L + LTL L +SL+ +ENSFTINSIHME LP EV NG+ LTL+C+VD+STTS + Q
Sbjct: 1 MLLALGLTLVLYASLQAEENSFTINSIHMESLPSWEVMNGQQLTLECLVDISTTSKSRSQ 60
Query: 406 HQVLFYKDDVLFHNVSSTKNTESYFISEARVYNSGRYKCTVILNNKEKTTAEYKVVVEGV 585
H+VLFYKDD + +NV+S ++TESY I +ARV++SG+YKCTV+LNNKEKTT EY+V V GV
Sbjct: 61 HRVLFYKDDAMVYNVTSREHTESYVIPQARVFHSGKYKCTVMLNNKEKTTIEYEVKVHGV 120
Query: 586 SNPRVTLDXXXXXXXXXXXXTCSVPEEKPPVHFIIEKFELNVRDVKQRREKTANNQNSVT 765
S P+VTLD CS+ EEKPP+ F IEK E+ + VK+R +KT +N+N V
Sbjct: 121 SKPKVTLDKKEVTEGGVVTVNCSLQEEKPPIFFKIEKLEVGTKFVKRRIDKT-SNENFVL 179
Query: 766 LEFTVEEQDRVILFSCQANVIFGTRVEISDSVRSDLVTVRESF 894
+EF +E QD V++F CQA ++ G +++ S+ +RS+ VTV+ESF
Sbjct: 180 MEFPIEAQDHVLVFRCQAGILSGFKLQESEPIRSEYVTVQESF 222
>ref|NP_032842.2| platelet endothelial cell adhesion molecule isoform 1 [Mus
musculus].
Length = 716
Score = 248 bits (632), Expect = 6e-66
Identities = 123/223 (55%), Positives = 166/223 (74%)
Frame = +1
Query: 226 MWLGVLLTLQLCSSLEGQENSFTINSIHMEMLPGQEVHNGENLTLQCIVDVSTTSSVKPQ 405
M L + LTL L +SL+ +ENSFTINSIHME LP EV NG+ LTL+C+VD+STTS + Q
Sbjct: 1 MLLALGLTLVLYASLQAEENSFTINSIHMESLPSWEVMNGQQLTLECLVDISTTSKSRSQ 60
Query: 406 HQVLFYKDDVLFHNVSSTKNTESYFISEARVYNSGRYKCTVILNNKEKTTAEYKVVVEGV 585
H+VLFYKDD + +NV+S ++TESY I +ARV++SG+YKCTV+LNNKEKTT EY+V V GV
Sbjct: 61 HRVLFYKDDAMVYNVTSREHTESYVIPQARVFHSGKYKCTVMLNNKEKTTIEYEVKVHGV 120
Query: 586 SNPRVTLDXXXXXXXXXXXXTCSVPEEKPPVHFIIEKFELNVRDVKQRREKTANNQNSVT 765
S P+VTLD CS+ EEKPP+ F IEK E+ + VK+R +KT +N+N V
Sbjct: 121 SKPKVTLDKKEVTEGGVVTVNCSLQEEKPPIFFKIEKLEVGTKFVKRRIDKT-SNENFVL 179
Query: 766 LEFTVEEQDRVILFSCQANVIFGTRVEISDSVRSDLVTVRESF 894
+EF +E QD V++F CQA ++ G +++ S+ +RS+ VTV+ESF
Sbjct: 180 MEFPIEAQDHVLVFRCQAGILSGFKLQESEPIRSEYVTVQESF 222
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,686,134
Number of extensions: 741897
Number of successful extensions: 2695
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2678
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 197
Effective length of database: 12,583,923
Effective search space: 2479032831
Effective search space used: 2479032831
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013763
(894 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000433.4| platelet endothelial cell adhesion molecule pre... 313 1e-85
>ref|NP_000433.4| platelet endothelial cell adhesion molecule precursor [Homo
sapiens].
Length = 738
Score = 313 bits (803), Expect = 1e-85
Identities = 155/233 (66%), Positives = 181/233 (77%)
Frame = +1
Query: 196 MRLRWTQGGNMWLGVLLTLQLCSSLEGQENSFTINSIHMEMLPGQEVHNGENLTLQCIVD 375
M+ RW QG MWLGVLLTL LCSSLEGQENSFTINS+ M+ LP V NG+NLTLQC D
Sbjct: 1 MQPRWAQGATMWLGVLLTLLLCSSLEGQENSFTINSVDMKSLPDWTVQNGKNLTLQCFAD 60
Query: 376 VSTTSSVKPQHQVLFYKDDVLFHNVSSTKNTESYFISEARVYNSGRYKCTVILNNKEKTT 555
VSTTS VKPQHQ+LFYKDDVLF+N+SS K+TESYFI E R+Y+SG YKCTVI+NNKEKTT
Sbjct: 61 VSTTSHVKPQHQMLFYKDDVLFYNISSMKSTESYFIPEVRIYDSGTYKCTVIVNNKEKTT 120
Query: 556 AEYKVVVEGVSNPRVTLDXXXXXXXXXXXXTCSVPEEKPPVHFIIEKFELNVRDVKQRRE 735
AEY+V+VEGV +PRVTLD CSVPEEK P+HF IEK ELN + VK +RE
Sbjct: 121 AEYQVLVEGVPSPRVTLDKKEAIQGGIVRVNCSVPEEKAPIHFTIEKLELNEKMVKLKRE 180
Query: 736 KTANNQNSVTLEFTVEEQDRVILFSCQANVIFGTRVEISDSVRSDLVTVRESF 894
K + +QN V LEF VEEQDRV+ F CQA +I G ++ S+S +S+LVTV ESF
Sbjct: 181 KNSRDQNFVILEFPVEEQDRVLSFRCQARIISGIHMQTSESTKSELVTVTESF 233
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,992,337
Number of extensions: 889176
Number of successful extensions: 3480
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3463
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 196
Effective length of database: 14,934,836
Effective search space: 2927227856
Effective search space used: 2927227856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013763
(894 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 613 e-173
>Sscrofa_Chr12
|| Length = 63588571
Score = 613 bits (309), Expect = e-173
Identities = 309/309 (100%)
Strand = Plus / Plus
Query: 578 aaggagtgtccaatcccagggtgacactggacaagaaggaggtgatcgaaggtggagtcg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14675003 aaggagtgtccaatcccagggtgacactggacaagaaggaggtgatcgaaggtggagtcg 14675062
Query: 638 tgaaggtcacttgttctgtcccagaggaaaaacctccagtacatttcataattgaaaaat 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14675063 tgaaggtcacttgttctgtcccagaggaaaaacctccagtacatttcataattgaaaaat 14675122
Query: 698 tcgaactaaatgtaagagacgtcaagcaaagaagagaaaaaactgctaacaaccagaatt 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14675123 tcgaactaaatgtaagagacgtcaagcaaagaagagaaaaaactgctaacaaccagaatt 14675182
Query: 758 ctgtgacgctggagttcacagtcgaggaacaagaccgtgttatattattctcctgtcaag 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14675183 ctgtgacgctggagttcacagtcgaggaacaagaccgtgttatattattctcctgtcaag 14675242
Query: 818 ctaatgtcatatttgggacccgcgtggagatctctgattccgtcaggagtgacctggtca 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14675243 ctaatgtcatatttgggacccgcgtggagatctctgattccgtcaggagtgacctggtca 14675302
Query: 878 ccgtgaggg 886
|||||||||
Sbjct: 14675303 ccgtgaggg 14675311
Score = 577 bits (291), Expect = e-162
Identities = 294/295 (99%)
Strand = Plus / Plus
Query: 287 ctttcaccattaacagcatccacatggagatgctgcccgggcaggaggtgcataatgggg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 14670745 ctttcaccattaacagcatccacatggagatgctgcccgggcaggaggtgcataacgggg 14670804
Query: 347 agaacctcacgctgcagtgcatcgtggatgtcagcaccacctcgagtgtcaagcctcagc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14670805 agaacctcacgctgcagtgcatcgtggatgtcagcaccacctcgagtgtcaagcctcagc 14670864
Query: 407 accaggtgctgttctataaggatgacgtgctgtttcacaacgtctcctccacgaagaaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14670865 accaggtgctgttctataaggatgacgtgctgtttcacaacgtctcctccacgaagaaca 14670924
Query: 467 cagaaagttatttcatttccgaagcccgggtctataactcagggagatacaaatgcactg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14670925 cagaaagttatttcatttccgaagcccgggtctataactcagggagatacaaatgcactg 14670984
Query: 527 tgattctgaacaacaaggagaagacgactgcggagtacaaggtggtcgtggaagg 581
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14670985 tgattctgaacaacaaggagaagacgactgcggagtacaaggtggtcgtggaagg 14671039
Score = 509 bits (257), Expect = e-142
Identities = 260/261 (99%)
Strand = Plus / Plus
Query: 1 ggtttccagcatggccgccattacctgaccagcgccccggccgctccctctgcagcgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14661678 ggtttccagcatggccgccattacctgaccagcgccccggccgctccctctgcagcgccc 14661737
Query: 61 gccgccgtcgtgccgccgcaggggtctccgctcttcacagggcagctctctcatctgcat 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14661738 gccgccgtcgtgccgccgcaggggcctccgctcttcacagggcagctctctcatctgcat 14661797
Query: 121 ctcgtgggaagtggccctcgcccccggggcatgggccgaaagcagaactaagtgcctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14661798 ctcgtgggaagtggccctcgcccccggggcatgggccgaaagcagaactaagtgcctgga 14661857
Query: 181 gccttcgctgtgaggatgcggctgaggtggacccaagggggcaacatgtggctgggagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14661858 gccttcgctgtgaggatgcggctgaggtggacccaagggggcaacatgtggctgggagtc 14661917
Query: 241 ctgctgacacttcagctctgt 261
|||||||||||||||||||||
Sbjct: 14661918 ctgctgacacttcagctctgt 14661938
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,173,369
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 3
Length of query: 894
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 873
Effective length of database: 2,808,413,156
Effective search space: 2451744685188
Effective search space used: 2451744685188
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)