Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013766
(1232 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535127.2| PREDICTED: similar to 2,4-dienoyl-CoA reductase... 547 e-156
Alignment gi|XP_851139.1| PREDICTED: similar to peroxisomal trans-2-enoyl... 150 2e-36
Alignment gi|XP_532316.2| PREDICTED: similar to peroxisomal trans-2-enoyl... 149 4e-36
Alignment gi|XP_536060.2| PREDICTED: similar to peroxisomal trans-2-enoyl... 138 9e-33
Alignment gi|XP_534965.1| PREDICTED: similar to peroxisomal trans-2-enoyl... 113 4e-25
Alignment gi|XP_851004.1| PREDICTED: similar to Estradiol 17-beta-dehydro... 97 4e-20
Alignment gi|NP_001041446.1| 17-beta-hydroxysteroid dehydrogenase 14 [Can... 96 5e-20
Alignment gi|NP_001041699.1| dehydrogenase/reductase SDR family member 4 ... 87 3e-17
Alignment gi|XP_534547.1| PREDICTED: similar to carbonic reductase 4 [Can... 83 6e-16
Alignment gi|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (... 79 1e-14
>ref|XP_535127.2| PREDICTED: similar to 2,4-dienoyl-CoA reductase, mitochondrial
precursor (2,4-dienoyl-CoA reductase [NADPH])
(4-enoyl-CoA reductase [NADPH]) [Canis familiaris].
Length = 370
Score = 547 bits (1409), Expect = e-156
Identities = 271/311 (87%), Positives = 289/311 (92%)
Frame = +2
Query: 83 FFTYGTKILYQSTEAFPSKSFPPFQKVMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLG 262
FF+YGT+ILYQ+ EAF SK FPP QK MLPPN+FQGK+AFITGGGTG+GK MT LSSLG
Sbjct: 59 FFSYGTQILYQNNEAFQSKFFPPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTALLSSLG 118
Query: 263 AQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVIN 442
AQCVIASRNID+LK TAE+ISSQTGNKVHAIQCD+R+P MVQ TVSELIKV GHP IVIN
Sbjct: 119 AQCVIASRNIDVLKDTAEQISSQTGNKVHAIQCDIRNPEMVQKTVSELIKVAGHPAIVIN 178
Query: 443 NAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETG 622
NAAGNFISPTERLS NAWKTITDIVLNGTA+VTLEIGKQLIKAQKGAAFLAITTI+AE+G
Sbjct: 179 NAAGNFISPTERLSANAWKTITDIVLNGTAYVTLEIGKQLIKAQKGAAFLAITTIFAESG 238
Query: 623 SGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMI 802
SGFVVPSASAKAGVEAM+KSLAAEW KYGMRFNVIQPGPIKTKGAFSRLDPTG FEK+MI
Sbjct: 239 SGFVVPSASAKAGVEAMNKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKDMI 298
Query: 803 DRIPCGRLGTVEELANLATFLCSDYASWINGATIRFDGGEQVLLSGEFNHLRKVTKEQWD 982
DRIPCGRLGTVEELANLA FLCSDYASWINGA IRFDGGE+V +SGEFN LRKVTKE+WD
Sbjct: 299 DRIPCGRLGTVEELANLAAFLCSDYASWINGAVIRFDGGEEVFISGEFNSLRKVTKEEWD 358
Query: 983 TIERLIRKTKG 1015
IE LIRKTKG
Sbjct: 359 IIEGLIRKTKG 369
>ref|XP_851139.1| PREDICTED: similar to peroxisomal trans-2-enoyl-CoA reductase
isoform 2 [Canis familiaris].
Length = 303
Score = 150 bits (379), Expect = 2e-36
Identities = 94/270 (34%), Positives = 141/270 (52%), Gaps = 12/270 (4%)
Frame = +2
Query: 155 QKVMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEI--SS 328
++ L P+ +LA +TGG TGIGK + T L LG VIASRN D LK+TAEE+ S
Sbjct: 7 RRSFLAPDLLLHQLAIVTGGATGIGKAIATELLHLGCNVVIASRNFDRLKSTAEELRASL 66
Query: 329 QTGNK--VHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKT 502
NK V I+C++R V N V +++ G + ++NN G F++ E ++ W
Sbjct: 67 PPTNKAQVTPIKCNIRKEEEVNNLVRSTLEIYGKINFLVNNGGGQFMAAMEHINAKGWHA 126
Query: 503 ITDIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGF--VVPSASAKAGVEAMS 676
+ + L GT ++ + +K G +I I T +G+ S +A+AGV ++
Sbjct: 127 VIETNLTGTFYMCKAVYNSWMKEHGG----SIVNIIILTRNGYPGFTHSGAARAGVYNLT 182
Query: 677 KSLAAEWSKYGMRFNVIQPGPIKTKGAFSRLDP------TGAFEKEMIDRIPCGRLGTVE 838
KSLA EW+ G+R N + PG I + A P G FEK IP R+G E
Sbjct: 183 KSLAVEWASSGIRINCVAPGTIYSPSAVDNYGPLAENMFAGYFEK-----IPAKRIGVPE 237
Query: 839 ELANLATFLCSDYASWINGATIRFDGGEQV 928
E++++ FL S AS+I G + DGG+ +
Sbjct: 238 EISSVVCFLLSPAASFITGQLVNVDGGQSL 267
>ref|XP_532316.2| PREDICTED: similar to peroxisomal trans-2-enoyl-CoA reductase
[Canis familiaris].
Length = 303
Score = 149 bits (377), Expect = 4e-36
Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 10/268 (3%)
Frame = +2
Query: 155 QKVMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQ- 331
++ L P +LA +TGG TGIGK + T L LG VIASRN D LK+TAEE+ +
Sbjct: 7 RRSFLAPGLLLHQLAIVTGGATGIGKAIATELLHLGCNVVIASRNFDRLKSTAEELRASL 66
Query: 332 ---TGNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKT 502
+V I+C++R V N V +++ G + ++NN G F++ E ++ W
Sbjct: 67 PPTNQAQVTPIKCNIRKEEEVNNLVRSTLEIYGKINFLVNNGGGQFVAAMEHINAKGWHA 126
Query: 503 ITDIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGF--VVPSASAKAGVEAMS 676
+ +I L GT ++ + +K G +I I T +G+ S +A+AGV ++
Sbjct: 127 VIEINLTGTFYMCKAVYNSWMKEPGG----SIVNIIILTRNGYPGFTHSGAARAGVYNLT 182
Query: 677 KSLAAEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEM----IDRIPCGRLGTVEEL 844
KSLA EW+ G+R N + PG I + A +D G + M +IP R+G EE+
Sbjct: 183 KSLAVEWASSGIRINCVAPGTIYSPSA---VDNYGPLAENMFAGYFGKIPAKRIGVPEEI 239
Query: 845 ANLATFLCSDYASWINGATIRFDGGEQV 928
+++ FL S AS+I G + DGG+ +
Sbjct: 240 SSVVCFLLSPAASFITGQLVNVDGGQSL 267
>ref|XP_536060.2| PREDICTED: similar to peroxisomal trans-2-enoyl-CoA reductase
isoform 1 [Canis familiaris].
Length = 333
Score = 138 bits (348), Expect = 9e-33
Identities = 94/297 (31%), Positives = 144/297 (48%), Gaps = 39/297 (13%)
Frame = +2
Query: 155 QKVMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEI--SS 328
++ L P+ +LA +TGG TGIGK + T L LG VIASRN D LK+TAEE+ S
Sbjct: 7 RRSFLAPDLLLHQLAIVTGGATGIGKAIATELLHLGCNVVIASRNFDRLKSTAEELRASL 66
Query: 329 QTGNK--VHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKT 502
NK V I+C++R V N V +++ G + ++NN G F++ E ++ W
Sbjct: 67 PPTNKAQVTPIKCNIRKEEEVNNLVRSTLEIYGKINFLVNNGGGQFMAAMEHINAKGWHA 126
Query: 503 ITDIVLNGTAFV----------TLEIGKQLIKA-------------------QKGAAFLA 595
+ + L GT ++ T + ++ I+ + G + +
Sbjct: 127 VIETNLTGTFYMCKAGKNQTQKTTYLDEKRIRTLFHVIVIVLFPAVYNSWMKEHGGSIVN 186
Query: 596 ITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQPGPIKTKGAFSRLDP 775
I + GF S +A+AGV ++KSLA EW+ G+R N + PG I + A P
Sbjct: 187 IIILTRNGYPGF-THSGAARAGVYNLTKSLAVEWASSGIRINCVAPGTIYSPSAVDNYGP 245
Query: 776 ------TGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATIRFDGGEQV 928
G FEK IP R+G EE++++ FL S AS+I G + DGG+ +
Sbjct: 246 LAENMFAGYFEK-----IPAKRIGVPEEISSVVCFLLSPAASFITGQLVNVDGGQSL 297
>ref|XP_534965.1| PREDICTED: similar to peroxisomal trans-2-enoyl-CoA reductase
[Canis familiaris].
Length = 230
Score = 113 bits (282), Expect = 4e-25
Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 12/221 (5%)
Frame = +2
Query: 167 LPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQ----T 334
L P Q +LA +TGG TGIGK + T L LG VIASRN D LK+T +E+ +
Sbjct: 11 LAPGLLQHQLAIVTGGATGIGKAIATELLHLGCNLVIASRNFDRLKSTVDELRTSLPLTN 70
Query: 335 GNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDI 514
+V I+C++ V N V +++ G + ++NN G F++ E ++ W + +
Sbjct: 71 QAQVTPIKCNICKEE-VNNLVRSTLEIYGKINFLVNNGGGQFMASMENINAKGWHAVVET 129
Query: 515 VLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGF--VVPSASAKAGVEAMSKSLA 688
L GT ++ + +K G +I I T +G+ S +A+AGV ++KS+A
Sbjct: 130 NLTGTFYMCKPVYNSWMKEHGG----SIVNIIILTRNGYPGFTHSGAARAGVYKLTKSIA 185
Query: 689 AEWSKYGMRFNVIQPGPIKTKGAFSRLDP------TGAFEK 793
EW+ G+R N + G I + A P G FEK
Sbjct: 186 VEWANSGIRINCVATGTIYSPSAVDNYGPLAEDVFAGYFEK 226
>ref|XP_851004.1| PREDICTED: similar to Estradiol 17-beta-dehydrogenase 8
(17-beta-HSD 8) (17-beta-hydroxysteroid dehydrogenase 8)
(Protein Ke6) (Ke-6) isoform 2 [Canis familiaris].
Length = 259
Score = 96.7 bits (239), Expect = 4e-20
Identities = 74/263 (28%), Positives = 130/263 (49%), Gaps = 11/263 (4%)
Frame = +2
Query: 164 MLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKA--TAEEISSQTG 337
M P + LA +TG G+GIG+ ++ L+ GA +A+ ++D A T + Q
Sbjct: 1 MASPLRLRSALALVTGAGSGIGRAVSVRLAKEGA--TVAACDLDRAAACETVWLLGGQGS 58
Query: 338 NKVH------AIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTE---RLSPN 490
KV A Q DV + V+ + ++ P V+ + AG ++ E R+S +
Sbjct: 59 EKVAPGGAHTAFQADVSEAGAVRRLLEQVQACFSRPPSVVVSCAG--LTRDEFLLRMSED 116
Query: 491 AWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEA 670
W + + L G VT + L+ + + + I++I + G+ A++KAGV
Sbjct: 117 DWDRVIAVNLKGIFLVTQAAAQALVSSGCRGSIINISSIVGKVGNVGQTNYAASKAGVIG 176
Query: 671 MSKSLAAEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELAN 850
++++ A E ++G+R N + PG I T ++ P +K +I IP G LG E++A+
Sbjct: 177 LTQTAARELGRHGIRCNSVLPGFITT--PMTQKVPQKVLDK-VIGMIPMGHLGDPEDVAD 233
Query: 851 LATFLCSDYASWINGATIRFDGG 919
TFL S+ + +I GA++ GG
Sbjct: 234 AVTFLASEDSGYITGASVEVTGG 256
>ref|NP_001041446.1| 17-beta-hydroxysteroid dehydrogenase 14 [Canis lupus familiaris].
Length = 270
Score = 96.3 bits (238), Expect = 5e-20
Identities = 79/254 (31%), Positives = 119/254 (46%), Gaps = 5/254 (1%)
Frame = +2
Query: 182 FQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQC 361
+ GK+ +TGGG GIG + GAQ VI ++ +A +E++ I C
Sbjct: 7 YAGKVVVVTGGGRGIGAGIARAFVQNGAQVVICDKDESGGRALEQELTGTV-----FILC 61
Query: 362 DVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPT--ERLSPNAWKTITDIVLNGTAF 535
DV VQ +SE ++ G D V+NNA G P E S ++ + ++ L GT
Sbjct: 62 DVTREKDVQTLISETVRRFGRLDCVVNNA-GYHPPPQWPEETSAEGFRQLLELNLLGTYT 120
Query: 536 VTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMR 715
VT L K+Q + I+++ G VP + K V AM+K+LA + S+YG+R
Sbjct: 121 VTKFALPHLRKSQGN--IINISSLVGAIGQVQAVPYVATKGAVTAMTKALALDESRYGVR 178
Query: 716 FNVIQPGPIKT---KGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASW 886
N I PG I T +G + A + P GRLG E+ A FL S+ A++
Sbjct: 179 VNCISPGNIWTPMWEGLAALTPDPAATVLQGTMNQPLGRLGQPAEVGAAAVFLASE-ATF 237
Query: 887 INGATIRFDGGEQV 928
G + GG ++
Sbjct: 238 CTGIELLVTGGAEL 251
>ref|NP_001041699.1| dehydrogenase/reductase SDR family member 4 [Canis lupus
familiaris].
Length = 255
Score = 87.0 bits (214), Expect = 3e-17
Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 6/249 (2%)
Frame = +2
Query: 191 KLAFITGGGTGIGKRMTTHLSSLGAQCVIASR---NIDILKATAE-EISSQTGNKVHAIQ 358
K+A +T GIG + L+ GA V++SR N+D A + E S TG H +
Sbjct: 10 KVALVTASTDGIGFAIARRLARDGAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVGK 69
Query: 359 CDVRDPNMVQNTVSELIKVIGHPDIVINNAAGN-FISPTERLSPNAWKTITDIVLNGTAF 535
+ R+ V+ + + G DI+I+NAA N F ++ W I DI + TA
Sbjct: 70 AEDRE-----RLVATAVNLHGGIDILISNAAVNPFFGNLMDVTEEVWDKILDINVKATAL 124
Query: 536 VTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMR 715
+T + ++ K + G + + + +I A + P +K + ++K+LA E + +R
Sbjct: 125 MTKAVVPEMEK-RGGGSVVIVASIGAYLPFPGLGPYNVSKTALLGLTKNLARELDQRNIR 183
Query: 716 FNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRI-PCGRLGTVEELANLATFLCSDYASWIN 892
N + PG IKT +FS++ +E I ++ R+G ++ A + +FLCS+ AS+I
Sbjct: 184 VNCLAPGLIKT--SFSKVLWMDKAREESIKKVMQIRRMGKPDDCAGIVSFLCSEDASYIT 241
Query: 893 GATIRFDGG 919
G T+ GG
Sbjct: 242 GETVVVGGG 250
>ref|XP_534547.1| PREDICTED: similar to carbonic reductase 4 [Canis familiaris].
Length = 237
Score = 82.8 bits (203), Expect = 6e-16
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 1/249 (0%)
Frame = +2
Query: 191 KLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVR 370
++ + GG GIG+ + ++ G + + +RN++ +A A E+ G A CDV
Sbjct: 3 RVCAVFGGSRGIGRAVAQVMAQKGYRLAVIARNLEGARAAAGEL----GGDHLAFSCDVA 58
Query: 371 DPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEI 550
VQNT E+ K +G + ++N A N S R + L G+
Sbjct: 59 KERDVQNTFEEMEKNLGRVNFLVNAAGINRDSLLVRTKTEDMISQLHTNLLGSMLTCKAA 118
Query: 551 GKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQ 730
K +I+ Q+G+ + I + SG V SAS K G+ S++LA E ++ +R NV+
Sbjct: 119 LKTMIQQQRGSIVNVGSIIGLKGNSGQSVYSAS-KGGLVGFSRALAKEVARKKIRVNVVA 177
Query: 731 PGPIKTKGAFSRLDPTGAFEKEMIDR-IPCGRLGTVEELANLATFLCSDYASWINGATIR 907
PG F D T ++E + + IP GR G ++A+ FL + +I G +
Sbjct: 178 PG-------FVHTDMTKDLKEEHLKKNIPLGRFGEPIDVAHAVVFLLE--SPYITGHVLV 228
Query: 908 FDGGEQVLL 934
DGG Q+++
Sbjct: 229 VDGGLQLVI 237
>ref|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 2
isoform 2 [Canis familiaris].
Length = 370
Score = 78.6 bits (192), Expect = 1e-14
Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 6/244 (2%)
Frame = +2
Query: 191 KLAFITGGGTGIGKRMTTHLSSLGAQCVIASR---NIDILKATAE-EISSQTGNKVHAIQ 358
++A +TG GIG + L+ GA V++SR N+D A + E S TG H +
Sbjct: 126 RVAVVTGATDGIGFAIARRLARDGAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVGK 185
Query: 359 CDVRDPNMVQNTVSELIKVIGHPDIVINNAAGN-FISPTERLSPNAWKTITDIVLNGTAF 535
+ R+ V+ +++ G D ++ NAA N + T + S W I D+ + A
Sbjct: 186 AEDRE-----RLVATVLEHYGGLDFLVCNAAVNPLVRSTLQASEEVWDKILDVNVKSPAL 240
Query: 536 VTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMR 715
+ ++ + GA L +++I A + P +K + ++++L+ E + G+R
Sbjct: 241 LLSQLLPHMENRGMGAVIL-VSSIAAYIPHVELGPYNVSKTALLGLTRTLSLELAPKGIR 299
Query: 716 FNVIQPGPIKTKGAFSR-LDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWIN 892
N + PG IKT FS+ L F ++ RLG E+ A L +FLCS A +IN
Sbjct: 300 VNCLVPGIIKTN--FSKVLHMNEVFWNNFKEKYRLQRLGQPEDCAGLVSFLCSPDACYIN 357
Query: 893 GATI 904
G I
Sbjct: 358 GENI 361
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,566,276
Number of extensions: 1095724
Number of successful extensions: 2834
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 2784
Number of HSP's successfully gapped: 45
Length of query: 410
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 305
Effective length of database: 15,374,224
Effective search space: 4689138320
Effective search space used: 4689138320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013766
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013766
(1232 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bo... 564 e-161
Alignment gi|NP_001071590.1| 2,4-dienoyl CoA reductase 2 [Bos taurus]. 119 7e-27
Alignment gi|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos ta... 99 1e-20
Alignment gi|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bo... 95 1e-19
Alignment gi|NP_001069359.1| L-xylulose reductase [Bos taurus]. 90 4e-18
Alignment gi|NP_001077186.1| carbonyl reductase family member 4 [Bos taur... 89 6e-18
Alignment gi|NP_001039789.1| estradiol 17-beta-dehydrogenase 8 [Bos tauru... 89 8e-18
Alignment gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil... 76 5e-14
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 75 9e-14
Alignment gi|XP_002685614.1| PREDICTED: peroxisomal trans-2-enoyl-CoA red... 73 5e-13
>ref|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bos taurus].
Length = 329
Score = 564 bits (1454), Expect = e-161
Identities = 283/328 (86%), Positives = 303/328 (92%), Gaps = 1/328 (0%)
Frame = +2
Query: 35 MALLGRV-FAPGHGPRRFFTYGTKILYQSTEAFPSKSFPPFQKVMLPPNTFQGKLAFITG 211
MA+L ++ F+ G G RRFF+YGTK LYQ+ EA SK FPPF KVMLP N+FQGK+AFITG
Sbjct: 1 MAVLNQLLFSWGRGSRRFFSYGTKTLYQNNEALQSKFFPPFPKVMLPANSFQGKVAFITG 60
Query: 212 GGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVRDPNMVQN 391
GGTG+GK MTT LSSLGAQCVIASR ID+LK TAE+ISSQTGNKVHAIQCDVRDP+MVQN
Sbjct: 61 GGTGLGKGMTTCLSSLGAQCVIASRKIDVLKVTAEQISSQTGNKVHAIQCDVRDPDMVQN 120
Query: 392 TVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKA 571
VSE IKVIGHPDIVINNAAGNFISP+ERLSPNAWKTITDIVLNGTAFVTL IGK+LIKA
Sbjct: 121 AVSETIKVIGHPDIVINNAAGNFISPSERLSPNAWKTITDIVLNGTAFVTLAIGKELIKA 180
Query: 572 QKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQPGPIKTK 751
QKGA+FLAITTIYAETGSGFVVPSASAKAGVEA++KSLAAEW KYGMRFNVIQPGPIKTK
Sbjct: 181 QKGASFLAITTIYAETGSGFVVPSASAKAGVEALNKSLAAEWGKYGMRFNVIQPGPIKTK 240
Query: 752 GAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATIRFDGGEQVL 931
GAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLA FLCSDYASWINGA IRFDGGE+VL
Sbjct: 241 GAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLAAFLCSDYASWINGAVIRFDGGEEVL 300
Query: 932 LSGEFNHLRKVTKEQWDTIERLIRKTKG 1015
+SGEFN LRKVTK+QWD IE LIRKTKG
Sbjct: 301 ISGEFNSLRKVTKDQWDIIEGLIRKTKG 328
>ref|NP_001071590.1| 2,4-dienoyl CoA reductase 2 [Bos taurus].
Length = 226
Score = 119 bits (297), Expect = 7e-27
Identities = 70/197 (35%), Positives = 104/197 (52%)
Frame = +2
Query: 149 PFQKVMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISS 328
P + + P+ Q K+AFITGGG+GIG R+ G VIASR++ + A ++++
Sbjct: 15 PEYRHLFHPDLLQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVSMAARKLAA 74
Query: 329 QTGNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTIT 508
TG + + DVR P + V + +K G DI+IN AAGNF+ P LS NA+KT+
Sbjct: 75 ATGQRCLPLSLDVRAPLAIAAAVEQALKEFGKIDILINCAAGNFLCPASALSSNAFKTVM 134
Query: 509 DIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLA 688
DI GT V+ + ++ + G + IT G V + SAKA V+AM++ LA
Sbjct: 135 DIDTLGTFNVSRVLYEKFFR-DHGGVIVNITATLGTRGQVLQVHAGSAKAAVDAMTRHLA 193
Query: 689 AEWSKYGMRFNVIQPGP 739
EW+ + P P
Sbjct: 194 VEWAPRTSASTALPPAP 210
>ref|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos taurus].
Length = 270
Score = 98.6 bits (244), Expect = 1e-20
Identities = 78/255 (30%), Positives = 122/255 (47%), Gaps = 6/255 (2%)
Frame = +2
Query: 182 FQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQC 361
+ GK+ +TGGG GIG + GAQ VI ++ +A E+ + C
Sbjct: 7 YAGKVVIVTGGGRGIGAGIVRAFVESGAQVVICDKDEARGRAVERELPGTV-----FLLC 61
Query: 362 DVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPT--ERLSPNAWKTITDIVLNGTAF 535
DV V+ VSE I+ G D ++NNA G P E S ++ + ++ L GT
Sbjct: 62 DVTREEDVRTLVSETIRRFGRLDCIVNNA-GYHPPPQWPEETSAQGFRQLLELNLLGTYT 120
Query: 536 VTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMR 715
+T L K++ + I+++ G VP + K V AM+K+LA + S+YG+R
Sbjct: 121 LTKLALPHLRKSRGNV--INISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVR 178
Query: 716 FNVIQPG----PIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYAS 883
N I PG P+ + A S DPT + + + P GR+G E+A A FL S+ A+
Sbjct: 179 VNCISPGNIWTPLWEELAASTPDPTATIREGTLAQ-PLGRMGQPAEVAAAAVFLASE-AT 236
Query: 884 WINGATIRFDGGEQV 928
+ G + GG ++
Sbjct: 237 FCTGTELLVTGGAEL 251
>ref|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bos taurus].
Length = 260
Score = 94.7 bits (234), Expect = 1e-19
Identities = 77/256 (30%), Positives = 130/256 (50%), Gaps = 8/256 (3%)
Frame = +2
Query: 176 NTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASR---NIDILKATAE-EISSQTGNK 343
N K+A +T GIG + L+ GA V++SR N+D AT + E S TG
Sbjct: 10 NPLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTV 69
Query: 344 VHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGN-FISPTERLSPNAWKTITDIVL 520
H + + R+ V+ +K+ G DI+I+NAA + F + W I D+ +
Sbjct: 70 CHVGKAEDRE-----RLVATAVKLHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNV 124
Query: 521 NGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWS 700
TA +T + ++ K + G + + +++I A + + P +K + ++K+LA E +
Sbjct: 125 KATALLTKAVVPEMAK-RGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELA 183
Query: 701 KYGMRFNVIQPGPIKTKGAFSRL---DPTGAFEKEMIDRIPCGRLGTVEELANLATFLCS 871
+ +R N + PG I+T +FSR+ DP A ++ + R+G EE A + +FLCS
Sbjct: 184 ESNVRVNCLAPGLIRT--SFSRVLWEDP--ARQESIKATFQIKRIGKPEECAGIVSFLCS 239
Query: 872 DYASWINGATIRFDGG 919
+ AS+I G T+ GG
Sbjct: 240 EDASYITGETVVVAGG 255
>ref|NP_001069359.1| L-xylulose reductase [Bos taurus].
Length = 244
Score = 90.1 bits (222), Expect = 4e-18
Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 1/245 (0%)
Frame = +2
Query: 188 GKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDV 367
G+ A +TG G GIG+ + L + GA+ V SR L + E V + D+
Sbjct: 7 GRRALVTGAGKGIGRSIVKALHAAGARVVAVSRTQADLDSLVRECPG-----VETVCVDL 61
Query: 368 RDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLE 547
D + + +G D+++NNAA F+ P ++ A+ + L V+
Sbjct: 62 ADWEATEQALGG----VGPVDLLVNNAAVAFLQPFLEVTKEAYDMSFSVNLRAVIQVSQI 117
Query: 548 IGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVI 727
+ + LI + +++ ++ G S K ++ ++K +A E + +R N +
Sbjct: 118 VARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHKIRVNAV 177
Query: 728 QPGPIKTK-GAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATI 904
P + T G + DP A K M+DRIP GR VE + + FL SD +S G+T+
Sbjct: 178 NPTVVMTPMGQAAWSDPQKA--KAMLDRIPLGRFAEVENVVDTILFLLSDRSSMTTGSTV 235
Query: 905 RFDGG 919
DGG
Sbjct: 236 PVDGG 240
>ref|NP_001077186.1| carbonyl reductase family member 4 [Bos taurus].
Length = 237
Score = 89.4 bits (220), Expect = 6e-18
Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 1/249 (0%)
Frame = +2
Query: 191 KLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVR 370
K+ + GG GIG+ + ++ G + I +RN++ +A A ++ G A+ CDV
Sbjct: 3 KVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLEGARAAAGDL----GGDHLALSCDVA 58
Query: 371 DPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEI 550
+ VQNT E+ K +G + ++N A N + R + + L G+
Sbjct: 59 KEHDVQNTFEEIEKNLGRVNFLVNAAGINRDNLLVRTNTEDMLSQLHTNLLGSMLTCRAA 118
Query: 551 GKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQ 730
K +IK Q+G+ + + + SG V SAS K G+ S++LA E +K +R NV+
Sbjct: 119 LKTMIKQQRGSIVNVGSVVGLKGNSGQSVYSAS-KGGLVGFSRALAKEVAKKKIRVNVVA 177
Query: 731 PGPIKTKGAFSRLDPTGAFEKEMIDR-IPCGRLGTVEELANLATFLCSDYASWINGATIR 907
PG I T D T +E++ + IP GR G ++A A FL + ++ G +
Sbjct: 178 PGFIHT-------DMTKDLNEELLKKNIPLGRFGDALDVAQAAVFLLE--SPYVTGHVLV 228
Query: 908 FDGGEQVLL 934
DGG Q+ +
Sbjct: 229 VDGGLQLTM 237
>ref|NP_001039789.1| estradiol 17-beta-dehydrogenase 8 [Bos taurus].
Length = 259
Score = 89.0 bits (219), Expect = 8e-18
Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 10/262 (3%)
Frame = +2
Query: 164 MLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVI-------ASRNIDILKATAEEI 322
M P + LA +TG G GIG+ ++ L++ GA A + +L E
Sbjct: 1 MASPLRLRSALALVTGAGGGIGRAISVRLAAEGAAVAACDLDGAAARETVQLLGGPGTEE 60
Query: 323 SSQTGNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTE---RLSPNA 493
+ G A Q DV + + + ++ P V+ + AG I+ E +S +
Sbjct: 61 GAPRGAHA-AFQADVSEAGAARRLLEQVQACFSRPPSVVVSCAG--ITRDEFLLHMSEDN 117
Query: 494 WKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAM 673
W + + L G VT + L+ + + + I++I + G+ A++KAGV +
Sbjct: 118 WDKVIAVNLKGIFLVTQAAAQALVSSGCPGSIINISSIIGKVGNMGQTNYAASKAGVIGL 177
Query: 674 SKSLAAEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANL 853
++S A E ++G+R N + PG I+T ++ P +K + IP +G E++A++
Sbjct: 178 TQSAARELGRHGIRCNSVLPGFIRT--PMTQKVPQKVLDK-VTGMIPMAHMGNPEDVADV 234
Query: 854 ATFLCSDYASWINGATIRFDGG 919
FL S+ + +I GA++ GG
Sbjct: 235 VAFLASEDSGYITGASVEVTGG 256
>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
taurus].
Length = 325
Score = 76.3 bits (186), Expect = 5e-14
Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 5/199 (2%)
Frame = +2
Query: 203 ITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHA-----IQCDV 367
ITG +G+G+ + GA+ V+ RN + L+ ++E+++ +V + D+
Sbjct: 57 ITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPEVQTHKPCTVTFDL 116
Query: 368 RDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLE 547
DP + SE+++ GH D++INNA ++ SP+ K + + G +T
Sbjct: 117 ADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVALTKA 176
Query: 548 IGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVI 727
+ +I+ ++G +AI++I + F A++K +A L AE ++ + VI
Sbjct: 177 LLPAMIRRRQGHV-VAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQHDIEVTVI 235
Query: 728 QPGPIKTKGAFSRLDPTGA 784
PG I T + + + G+
Sbjct: 236 SPGYIHTNLSLNAVTADGS 254
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 75.5 bits (184), Expect = 9e-14
Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 5/199 (2%)
Frame = +2
Query: 203 ITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTG-----NKVHAIQCDV 367
ITG +G+G+ + GA+ V+ RN + L+ ++E+++ +K + D+
Sbjct: 57 ITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPGVQTHKPCTVTFDL 116
Query: 368 RDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLE 547
DP + SE+++ GH D++INNA ++ SP+ K + + G +T
Sbjct: 117 ADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVALTKA 176
Query: 548 IGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVI 727
+ +I+ ++G +AI++I + F A++K +A L AE ++ + VI
Sbjct: 177 LLPAMIRRRQGHV-VAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQHDIEVTVI 235
Query: 728 QPGPIKTKGAFSRLDPTGA 784
PG I T + + + G+
Sbjct: 236 SPGYIHTNLSLNAVTADGS 254
>ref|XP_002685614.1| PREDICTED: peroxisomal trans-2-enoyl-CoA reductase-like [Bos
taurus].
Length = 205
Score = 73.2 bits (178), Expect = 5e-13
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Frame = +2
Query: 602 TIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQPGPIKTKGAFSRLD-PT 778
T+ + G V S +A+ GV ++KSLA EW+ G+R N + PG I ++ AFS D T
Sbjct: 60 TVLTKNGFPGAVHSGAAREGVYNLTKSLALEWASSGVRINSVAPGTIYSETAFSNYDYLT 119
Query: 779 GAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATIRFDGGEQV 928
+ I +IP R G EE+++L FL S AS++ G + DGG+ +
Sbjct: 120 KDLLNKYIQKIPAKRFGFPEEVSSLVCFLLSPAASFVTGQLVYVDGGQSL 169
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,717,253
Number of extensions: 1063251
Number of successful extensions: 2716
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 2690
Number of HSP's successfully gapped: 35
Length of query: 410
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,207,134
Effective search space: 4333175870
Effective search space used: 4333175870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013766
(1232 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Su... 649 0.0
Alignment gi|XP_003124745.1| PREDICTED: peroxisomal 2,4-dienoyl-CoA reduc... 145 6e-35
Alignment gi|XP_003354699.1| PREDICTED: peroxisomal 2,4-dienoyl-CoA reduc... 145 6e-35
Alignment gi|NP_001124202.1| estradiol 17-beta-dehydrogenase 8 [Sus scrof... 94 2e-19
Alignment gi|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Su... 90 3e-18
Alignment gi|XP_001927120.1| PREDICTED: carbonyl reductase family member ... 78 1e-14
Alignment gi|XP_003128591.1| PREDICTED: dehydrogenase/reductase SDR famil... 69 5e-12
Alignment gi|NP_998992.1| carbonyl reductase [NADPH] 2 [Sus scrofa]. 66 3e-11
Alignment gi|XP_003357106.1| PREDICTED: 3-hydroxybutyrate dehydrogenase t... 62 9e-10
Alignment gi|XP_003129333.2| PREDICTED: 3-hydroxybutyrate dehydrogenase t... 62 9e-10
>ref|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Sus scrofa].
Length = 328
Score = 649 bits (1674), Expect = 0.0
Identities = 325/327 (99%), Positives = 326/327 (99%)
Frame = +2
Query: 35 MALLGRVFAPGHGPRRFFTYGTKILYQSTEAFPSKSFPPFQKVMLPPNTFQGKLAFITGG 214
MALLGRVFAPGHGPRRFFTYGTKILYQSTEAFPSKSFPPFQKVMLPPNTFQGKLAFITGG
Sbjct: 1 MALLGRVFAPGHGPRRFFTYGTKILYQSTEAFPSKSFPPFQKVMLPPNTFQGKLAFITGG 60
Query: 215 GTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVRDPNMVQNT 394
GTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVRDPNMVQNT
Sbjct: 61 GTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVRDPNMVQNT 120
Query: 395 VSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQ 574
VSELIKVIGHPDIVINNAAGNFISP+ERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQ
Sbjct: 121 VSELIKVIGHPDIVINNAAGNFISPSERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQ 180
Query: 575 KGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQPGPIKTKG 754
KGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQPGPIKTKG
Sbjct: 181 KGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQPGPIKTKG 240
Query: 755 AFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATIRFDGGEQVLL 934
AFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATIRFDGGEQVLL
Sbjct: 241 AFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATIRFDGGEQVLL 300
Query: 935 SGEFNHLRKVTKEQWDTIERLIRKTKG 1015
SGEFNHLRKVTKEQWDTIE LIRKTKG
Sbjct: 301 SGEFNHLRKVTKEQWDTIEGLIRKTKG 327
>ref|XP_003124745.1| PREDICTED: peroxisomal 2,4-dienoyl-CoA reductase-like isoform 1
[Sus scrofa].
Length = 311
Score = 145 bits (365), Expect = 6e-35
Identities = 90/257 (35%), Positives = 130/257 (50%)
Frame = +2
Query: 149 PFQKVMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISS 328
P + + P+ Q K+AFITGGG+GIG R+ G VIASR++ + A ++++
Sbjct: 43 PEYRHLFCPDLLQDKVAFITGGGSGIGFRIAELFMRHGCHTVIASRSLPRVSTAARKLAA 102
Query: 329 QTGNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTIT 508
TG + DVR P + V + ++ +G DI++N AAGNF+ P LSPNA+K +
Sbjct: 103 ATGQTCLPLSLDVRVPATIVAAVEQALQGLGKVDILVNCAAGNFLCPASALSPNAFKAVL 162
Query: 509 DIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLA 688
D GT F + + G + IT G V + SAKA V+AM++ LA
Sbjct: 163 DTDTLGT-FNMCRVLYEKFFRDHGGVIVNITATLGTRGQVLQVHAGSAKAAVDAMTRHLA 221
Query: 689 AEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLC 868
EW+ +R N + GPI F RL+ P RLG E+A+ A FL
Sbjct: 222 VEWAPQNIRVNSLALGPISGTEGFRRLETLAG---------PQQRLGNKTEVAHSALFLA 272
Query: 869 SDYASWINGATIRFDGG 919
S AS++ GA + DGG
Sbjct: 273 SPLASYVTGAVLVVDGG 289
>ref|XP_003354699.1| PREDICTED: peroxisomal 2,4-dienoyl-CoA reductase-like isoform 2
[Sus scrofa].
Length = 320
Score = 145 bits (365), Expect = 6e-35
Identities = 91/257 (35%), Positives = 130/257 (50%)
Frame = +2
Query: 149 PFQKVMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISS 328
P + + P+ Q K+AFITGGG+GIG R+ G VIASR++ + A ++++
Sbjct: 43 PEYRHLFCPDLLQDKVAFITGGGSGIGFRIAELFMRHGCHTVIASRSLPRVSTAARKLAA 102
Query: 329 QTGNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTIT 508
TG + DVR P + V + ++ +G DI++N AAGNF+ P LSPNA+K +
Sbjct: 103 ATGQTCLPLSLDVRVPATIVAAVEQALQGLGKVDILVNCAAGNFLCPASALSPNAFKAVL 162
Query: 509 DIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLA 688
D GT F + + G + IT G V + SAKA V+AM++ LA
Sbjct: 163 DTDTLGT-FNMCRVLYEKFFRDHGGVIVNITATLGTRGQVLQVHAGSAKAAVDAMTRHLA 221
Query: 689 AEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLC 868
EW+ +R N + GPI F RL A P RLG E+A+ A FL
Sbjct: 222 VEWAPQNIRVNSLALGPISGTEGFRRLGGLNAGLHTETLAGPQQRLGNKTEVAHSALFLA 281
Query: 869 SDYASWINGATIRFDGG 919
S AS++ GA + DGG
Sbjct: 282 SPLASYVTGAVLVVDGG 298
>ref|NP_001124202.1| estradiol 17-beta-dehydrogenase 8 [Sus scrofa].
Length = 259
Score = 94.0 bits (232), Expect = 2e-19
Identities = 68/252 (26%), Positives = 124/252 (49%), Gaps = 10/252 (3%)
Frame = +2
Query: 194 LAFITGGGTGIGKRMTTHLSSLGAQCVI-------ASRNIDILKATAEEISSQTGNKVHA 352
LA +TG G+GIG+ ++ L++ GA A + +L E + +G A
Sbjct: 11 LALVTGAGSGIGRAVSVRLAAEGAAVAACDLDGAAAQETVQLLGGPGSEKGAPSGAHA-A 69
Query: 353 IQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTE---RLSPNAWKTITDIVLN 523
Q DV + + + ++ P V+ + AG I+ E R+S + W + + L
Sbjct: 70 FQADVSEAETARRLLEQVQAYFFRPPSVVVSCAG--ITRDEFLLRMSEDDWDKVIAVNLK 127
Query: 524 GTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSK 703
G VT + L+ + + + I++I + G+ A++KAGV +++++A E +
Sbjct: 128 GIFLVTQAAAQALVSSGCPGSIINISSIIGKVGNMGQTNYAASKAGVIGLTQAVARELGR 187
Query: 704 YGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYAS 883
Y +R N + PG IKT ++ P +K ++ IP G LG E++A++ FL S+ +
Sbjct: 188 YRIRCNSVLPGFIKT--PMAQKVPQKVLDK-VVGMIPMGHLGDPEDVADVVAFLASEDSG 244
Query: 884 WINGATIRFDGG 919
+I GA++ GG
Sbjct: 245 YITGASVEVTGG 256
>ref|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Sus scrofa].
Length = 260
Score = 89.7 bits (221), Expect = 3e-18
Identities = 76/255 (29%), Positives = 126/255 (49%), Gaps = 10/255 (3%)
Frame = +2
Query: 185 QGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASR---NIDILKATAE-EISSQTGNKVHA 352
+ K+A +T GIG + L+ GA V++SR N+D AT + E S TG H
Sbjct: 13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHV 72
Query: 353 IQCDVRDPNMVQNTVSELIKVIGHPDIVINNAA-----GNFISPTERLSPNAWKTITDIV 517
+ + R+ V+ + + G DI+++NAA GN I TE + W I +
Sbjct: 73 GKAEDRE-----RLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEV----WDKILHVN 123
Query: 518 LNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEW 697
+ T +T + ++ K + G + L ++++ A + P +K + ++K+LA E
Sbjct: 124 VKATVLMTKAVVPEMEK-RGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVEL 182
Query: 698 SKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKE-MIDRIPCGRLGTVEELANLATFLCSD 874
+ +R N + PG IKT FS++ KE M + + RLG E+ A + +FLCS+
Sbjct: 183 APRNIRVNCLAPGLIKTN--FSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE 240
Query: 875 YASWINGATIRFDGG 919
AS+I G T+ GG
Sbjct: 241 DASYITGETVVVGGG 255
>ref|XP_001927120.1| PREDICTED: carbonyl reductase family member 4-like [Sus scrofa].
Length = 237
Score = 77.8 bits (190), Expect = 1e-14
Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 1/249 (0%)
Frame = +2
Query: 191 KLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVR 370
++ + GG GIG+ + ++ G + I +RN+ +A A ++ G A+ CDV
Sbjct: 3 RVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAVAGDL----GGDHLALSCDVA 58
Query: 371 DPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEI 550
VQ+T E+ K +G + ++N A N + R S L G+
Sbjct: 59 KEQDVQSTFEEIEKNLGPVNFLVNAAGINRDNLLVRTSTEDMLCQLQTNLLGSMLTCKAA 118
Query: 551 GKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQ 730
K +IK Q G+ + + + G V SAS K G+ S++LA E +K +R NV+
Sbjct: 119 VKTMIKQQGGSIVNIGSVVGLKGNPGQSVYSAS-KGGLVGFSRALAKEVAKKKIRVNVVA 177
Query: 731 PGPIKTKGAFSRLDPTGAFEKEMI-DRIPCGRLGTVEELANLATFLCSDYASWINGATIR 907
PG F D T ++E + IP GR G ++A+ FL + +I G +
Sbjct: 178 PG-------FVHTDMTKDLKEEHLKSNIPLGRFGDPLDVAHAVLFLLE--SPYITGHALV 228
Query: 908 FDGGEQVLL 934
DGG Q+ +
Sbjct: 229 VDGGLQLTM 237
>ref|XP_003128591.1| PREDICTED: dehydrogenase/reductase SDR family member 1-like [Sus
scrofa].
Length = 313
Score = 68.9 bits (167), Expect = 5e-12
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 10/240 (4%)
Frame = +2
Query: 185 QGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCD 364
QG++ +TG GIG+ + L GA I R++D L+ TA+E S+ G V + CD
Sbjct: 6 QGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVV-CD 64
Query: 365 VRDPNMVQNTVSELIK-VIGHPDIVINNAAGN---FISPTERL---SP-NAWKTITDIVL 520
+ VQ+ ++ + G D+++NNA I+ ++ SP + W + ++ L
Sbjct: 65 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 124
Query: 521 NGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWS 700
G ++ + ++ A +G + I + F VP KA + ++ A E
Sbjct: 125 RGHYLCSVYAARLMVPAGRG--LIVIISSIGGLQYLFSVPYGVGKAACDRLAADCAQELR 182
Query: 701 KYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRI--PCGRLGTVEELANLATFLCSD 874
++G+ + + PG ++T+ + + MI++I P T E L +D
Sbjct: 183 RHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALATD 242
>ref|NP_998992.1| carbonyl reductase [NADPH] 2 [Sus scrofa].
Length = 244
Score = 66.2 bits (160), Expect = 3e-11
Identities = 55/247 (22%), Positives = 110/247 (44%), Gaps = 1/247 (0%)
Frame = +2
Query: 182 FQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQC 361
F G A +TG G GIG+ L GA+ V +R L + ++E + +
Sbjct: 5 FSGLRALVTGAGKGIGRDTVKALHVSGARVVAVTRTNGDLVSLSQECPG-----IEPVCV 59
Query: 362 DVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVT 541
D+ D + + +G D+++NNAA + P + + ++ L V+
Sbjct: 60 DLGDWEATERALGG----VGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVS 115
Query: 542 LEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFN 721
+ + +I+ + + ++++ + + +S K + ++KS+A E + +R N
Sbjct: 116 QIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVN 175
Query: 722 VIQPGPIKT-KGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGA 898
+ P + T G DP A +++ +R P + VE++ N FL SD ++ +G+
Sbjct: 176 SVNPTVVLTAMGRSVTSDPELA--RKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGS 233
Query: 899 TIRFDGG 919
+I D G
Sbjct: 234 SIFVDAG 240
>ref|XP_003357106.1| PREDICTED: 3-hydroxybutyrate dehydrogenase type 2-like isoform 2
[Sus scrofa].
Length = 245
Score = 61.6 bits (148), Expect = 9e-10
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 6/250 (2%)
Frame = +2
Query: 188 GKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDV 367
GK+ +T GIG+ + GA+ VIA+ DI ++ +E+ + G IQ V
Sbjct: 6 GKVIILTAAAQGIGRAAALAFAREGAK-VIAT---DINESKLQELENYPG-----IQTRV 56
Query: 368 RDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLE 547
D + + E I D++ N A W ++ + + ++ ++
Sbjct: 57 LDVTK-KKQIDEFANDIERLDVLFNVAGFVHHGTILDCEEKDWDFSMNLNVR-SMYLMIK 114
Query: 548 IGKQLIKAQKGAAFLAITTIYAETGSGFV---VPSASAKAGVEAMSKSLAAEWSKYGMRF 718
+ AQK + ++++ A + G V V SA+ KA V ++KS+AA++ + G+R
Sbjct: 115 AFLPKMLAQKSGNIINMSSV-ASSIKGVVNRCVYSAT-KAAVIGLTKSVAADFIQQGIRC 172
Query: 719 NVIQPGPIKTKGAFSRLDPTGAFEKEMID---RIPCGRLGTVEELANLATFLCSDYASWI 889
N + PG + T R+ E+ + D R GR T EE+A L +L SD ++++
Sbjct: 173 NCVCPGTVDTPSLQERIQARPNPEEALSDFLKRQKTGRFATAEEVALLCVYLASDESAYV 232
Query: 890 NGATIRFDGG 919
G + DGG
Sbjct: 233 TGNPVVIDGG 242
>ref|XP_003129333.2| PREDICTED: 3-hydroxybutyrate dehydrogenase type 2-like isoform 1
[Sus scrofa].
Length = 245
Score = 61.6 bits (148), Expect = 9e-10
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 6/250 (2%)
Frame = +2
Query: 188 GKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDV 367
GK+ +T GIG+ + GA+ VIA+ DI ++ +E+ + G IQ V
Sbjct: 6 GKVIILTAAAQGIGRAAALAFAREGAK-VIAT---DINESKLQELENYPG-----IQTRV 56
Query: 368 RDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLE 547
D + + E I D++ N A W ++ + + ++ ++
Sbjct: 57 LDVTK-KKQIDEFANDIERLDVLFNVAGFVHHGTILDCEEKDWDFSMNLNVR-SMYLMIK 114
Query: 548 IGKQLIKAQKGAAFLAITTIYAETGSGFV---VPSASAKAGVEAMSKSLAAEWSKYGMRF 718
+ AQK + ++++ A + G V V SA+ KA V ++KS+AA++ + G+R
Sbjct: 115 AFLPKMLAQKSGNIINMSSV-ASSIKGVVNRCVYSAT-KAAVIGLTKSVAADFIQQGIRC 172
Query: 719 NVIQPGPIKTKGAFSRLDPTGAFEKEMID---RIPCGRLGTVEELANLATFLCSDYASWI 889
N + PG + T R+ E+ + D R GR T EE+A L +L SD ++++
Sbjct: 173 NCVCPGTVDTPSLQERIQARPNPEEALSDFLKRQKTGRFATAEEVALLCVYLASDESAYV 232
Query: 890 NGATIRFDGG 919
G + DGG
Sbjct: 233 TGNPVVIDGG 242
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,036,886
Number of extensions: 675413
Number of successful extensions: 1749
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 35
Length of query: 410
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,829,335
Effective search space: 2728264515
Effective search space used: 2728264515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013766
(1232 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080448.1| 2,4-dienoyl-CoA reductase, mitochondrial precur... 548 e-156
Alignment gi|NP_036063.1| peroxisomal 2,4-dienoyl-CoA reductase [Mus musc... 143 3e-34
Alignment gi|NP_076012.3| peroxisomal trans-2-enoyl-CoA reductase [Mus mu... 142 4e-34
Alignment gi|NP_038571.2| estradiol 17-beta-dehydrogenase 8 [Mus musculus]. 89 5e-18
Alignment gi|NP_079606.3| dehydrogenase/reductase (SDR family) member 10 ... 89 9e-18
Alignment gi|NP_080704.2| L-xylulose reductase [Mus musculus]. 87 3e-17
Alignment gi|NP_663570.2| carbonyl reductase family member 4 [Mus musculu... 87 3e-17
Alignment gi|NP_001033027.2| dehydrogenase/reductase SDR family member 4 ... 86 5e-17
Alignment gi|NP_082066.2| dehydrogenase/reductase member 2 [Mus musculus]. 80 3e-15
Alignment gi|NP_031647.1| carbonyl reductase [NADPH] 2 [Mus musculus]. 73 4e-13
>ref|NP_080448.1| 2,4-dienoyl-CoA reductase, mitochondrial precursor [Mus musculus].
Length = 335
Score = 548 bits (1411), Expect = e-156
Identities = 273/334 (81%), Positives = 300/334 (89%), Gaps = 7/334 (2%)
Frame = +2
Query: 35 MALLGRVFAPG-------HGPRRFFTYGTKILYQSTEAFPSKSFPPFQKVMLPPNTFQGK 193
MALLGR F G GP+RFF++GTK LYQS +A SK F P K MLPP+ FQGK
Sbjct: 1 MALLGRAFFAGVSRLPCDPGPQRFFSFGTKTLYQSKDAPQSKFFQPVLKPMLPPDAFQGK 60
Query: 194 LAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVRD 373
+AFITGGGTG+GK MTT LS+LGAQCVIASRNID+LKATAEEISS+TGNKVHAI+CDVRD
Sbjct: 61 VAFITGGGTGLGKAMTTFLSTLGAQCVIASRNIDVLKATAEEISSKTGNKVHAIRCDVRD 120
Query: 374 PNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIG 553
P+MV NTV ELIKV GHPD+VINNAAGNFISP+ERL+PN WKTITDIVLNGTA+VTLEIG
Sbjct: 121 PDMVHNTVLELIKVAGHPDVVINNAAGNFISPSERLTPNGWKTITDIVLNGTAYVTLEIG 180
Query: 554 KQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQP 733
KQLIKAQKGAAFLAITTIYAE+GSGFV+PS+SAK+GVEAM+KSLAAEW +YGMRFN+IQP
Sbjct: 181 KQLIKAQKGAAFLAITTIYAESGSGFVMPSSSAKSGVEAMNKSLAAEWGRYGMRFNIIQP 240
Query: 734 GPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATIRFD 913
GPIKTKGAFSRLDPTG FEKEMIDRIPCGRLGT+EELANLATFLCSDYASWINGA IRFD
Sbjct: 241 GPIKTKGAFSRLDPTGRFEKEMIDRIPCGRLGTMEELANLATFLCSDYASWINGAVIRFD 300
Query: 914 GGEQVLLSGEFNHLRKVTKEQWDTIERLIRKTKG 1015
GGE+V LSGEFN L+KVTKE+WD IE LIRKTKG
Sbjct: 301 GGEEVFLSGEFNSLKKVTKEEWDIIEGLIRKTKG 334
>ref|NP_036063.1| peroxisomal 2,4-dienoyl-CoA reductase [Mus musculus].
Length = 292
Score = 143 bits (360), Expect = 3e-34
Identities = 87/249 (34%), Positives = 130/249 (52%)
Frame = +2
Query: 173 PNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHA 352
P+ Q K+AFITGGG+GIG R+ G VI R++ + A+++ + TG +
Sbjct: 23 PDLLQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVGRSLQKVTTAAKKLVAATGKRCLP 82
Query: 353 IQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTA 532
+ DVR P V V + ++ G +I+IN AAGNF+ P LS NA+KT+ DI GT
Sbjct: 83 LSMDVRVPPEVMTAVDQALQEFGKINILINCAAGNFLCPASALSFNAFKTVVDIDTIGTF 142
Query: 533 FVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGM 712
V+ + K+ + G + IT + G + + +AKA V+AM++ LA EW +
Sbjct: 143 NVSSVLYKKFFR-DHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQNI 201
Query: 713 RFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWIN 892
R N + PG I RL + A K P RLGT E+A+ +L S AS+++
Sbjct: 202 RVNSLAPGAISGTEGLRRLRGSNASSKLKHFSNPIPRLGTKTEIAHSVLYLASPLASYVS 261
Query: 893 GATIRFDGG 919
G + DGG
Sbjct: 262 GIVLVVDGG 270
>ref|NP_076012.3| peroxisomal trans-2-enoyl-CoA reductase [Mus musculus].
Length = 303
Score = 142 bits (359), Expect = 4e-34
Identities = 86/259 (33%), Positives = 132/259 (50%), Gaps = 7/259 (2%)
Frame = +2
Query: 167 LPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQ----T 334
L + ++A +TGGGTGIGK ++ L LG VIASR +D L A +E+ + +
Sbjct: 11 LAAGLLKNQVAVVTGGGTGIGKAVSRELLHLGCNVVIASRKLDRLTAAVDELRASLPPSS 70
Query: 335 GNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDI 514
+V AIQC++R V N V + G + ++NN G F++P E ++ W + +
Sbjct: 71 SAEVSAIQCNIRKEEEVSNLVKSTLAKYGKINFLVNNGGGQFMAPVEDITAKGWHAVIET 130
Query: 515 VLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGF--VVPSASAKAGVEAMSKSLA 688
L GT ++ E+ ++ G +I I +GF + +A+ GV ++KS+A
Sbjct: 131 NLTGTFYMCKEVYNSWMREHGG----SIVNIIVLLNNGFPTAAHTGAAREGVYNLTKSMA 186
Query: 689 AEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEM-IDRIPCGRLGTVEELANLATFL 865
W+ G+R N + PG I ++ A G EM D IP RLG EE++ L FL
Sbjct: 187 LAWASSGVRINCVAPGTIYSQTAVDNYGEMGQTLFEMAFDSIPAKRLGVPEEISPLVCFL 246
Query: 866 CSDYASWINGATIRFDGGE 922
S AS+I G I DGG+
Sbjct: 247 LSPAASYITGQLINVDGGQ 265
>ref|NP_038571.2| estradiol 17-beta-dehydrogenase 8 [Mus musculus].
Length = 259
Score = 89.4 bits (220), Expect = 5e-18
Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 10/252 (3%)
Frame = +2
Query: 194 LAFITGGGTGIGKRMTTHLSSLGAQCVI-------ASRNIDILKATAEEISSQTGNKVHA 352
LA +TG G+GIG+ ++ L++ GA A + +L + E + G K A
Sbjct: 11 LALVTGAGSGIGRAISVRLAAEGAAVAACDLDGAAAQDTVRLLGSPGSEDGAPRG-KHAA 69
Query: 353 IQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTE---RLSPNAWKTITDIVLN 523
Q DV + + E+ P V+ + AG I+ E +S W + + L
Sbjct: 70 FQADVSQGPAARRLLEEVQACFSRPPSVVVSCAG--ITRDEFLLHMSEEDWDRVIAVNLK 127
Query: 524 GTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSK 703
GT VT + L+ + + + I++I + G+ AS+KAGV ++++ A E +
Sbjct: 128 GTFLVTQAAAQALVSSGGRGSIINISSIIGKVGNIGQTNYASSKAGVIGLTQTAARELGR 187
Query: 704 YGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYAS 883
+G+R N + PG I T ++ P +K + IP G +G E++A++ FL S+ +
Sbjct: 188 HGIRCNSVLPGFIAT--PMTQKMPEKVKDK-VTAMIPLGHMGDPEDVADVVAFLASEDSG 244
Query: 884 WINGATIRFDGG 919
+I GA++ GG
Sbjct: 245 YITGASVEVSGG 256
>ref|NP_079606.3| dehydrogenase/reductase (SDR family) member 10 [Mus musculus].
Length = 273
Score = 88.6 bits (218), Expect = 9e-18
Identities = 76/279 (27%), Positives = 127/279 (45%), Gaps = 7/279 (2%)
Frame = +2
Query: 182 FQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQC 361
+ GK+ +TGG GIG + GAQ V ++ +A +E+S I
Sbjct: 7 YSGKVVVVTGGSRGIGAAIVRAFVDSGAQVVFCDKDEAGGRALEQELSGTV-----FIPG 61
Query: 362 DVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPT---ERLSPNAWKTITDIVLNGTA 532
DV +Q VSE + GH D V+NNA + P E S ++ + ++ L GT
Sbjct: 62 DVTQERDLQTLVSETLSRFGHLDCVVNNAG--YHPPAQLPEETSAQGFRQLLEVNLLGT- 118
Query: 533 FVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGM 712
+ +++ ++ +G + I+++ G + + K V AM+K+LA + S++G+
Sbjct: 119 YTLIKLALPHLRKSRGN-IINISSLVGAIGQSQALTYVATKGAVTAMTKALALDESRHGV 177
Query: 713 RFNVIQPG----PIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYA 880
R N I PG P+ + A S DP + + + P GR+G E+A A FL S+ A
Sbjct: 178 RVNCISPGNIWTPLWEELAASTSDPRATILEGTLAQ-PLGRMGQPAEVAAAAVFLASE-A 235
Query: 881 SWINGATIRFDGGEQVLLSGEFNHLRKVTKEQWDTIERL 997
++ G + GG E + RK +K + L
Sbjct: 236 TFCTGLELLVTGG------AELGYGRKASKSSLGEVPTL 268
>ref|NP_080704.2| L-xylulose reductase [Mus musculus].
Length = 244
Score = 86.7 bits (213), Expect = 3e-17
Identities = 65/245 (26%), Positives = 110/245 (44%), Gaps = 1/245 (0%)
Frame = +2
Query: 188 GKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDV 367
G+ A +TG G GIG+ L + GAQ V SR + L E V + D+
Sbjct: 7 GRRALVTGAGKGIGRSTVLALKAAGAQVVAVSRTREDLDDLVRECPG-----VEPVCVDL 61
Query: 368 RDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLE 547
D + +S +G D+++NNAA + P ++ A T ++ L V+
Sbjct: 62 ADWEATEQALSN----VGPVDLLVNNAAVALLQPFLEVTKEACDTSFNVNLRAVIQVSQI 117
Query: 548 IGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVI 727
+ K +I A + +++ ++ S K ++ ++K +A E + +R N +
Sbjct: 118 VAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKMMALELGPHKIRVNAV 177
Query: 728 QPGPIKTK-GAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATI 904
P + T G + DP A K M+DRIP G+ VE + + FL S+ + G+T+
Sbjct: 178 NPTVVMTPMGRTNWSDPHKA--KAMLDRIPLGKFAEVENVVDTILFLLSNRSGMTTGSTL 235
Query: 905 RFDGG 919
DGG
Sbjct: 236 PVDGG 240
>ref|NP_663570.2| carbonyl reductase family member 4 [Mus musculus].
Length = 236
Score = 86.7 bits (213), Expect = 3e-17
Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 1/247 (0%)
Frame = +2
Query: 191 KLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVR 370
K+ + GG GIG+ + ++ G + I SRN+++ K TA E+ GN + A +CDV
Sbjct: 3 KVCAVFGGSRGIGRAVAQLMAQKGYRLAIVSRNLEVAKVTAGELG---GNHL-AFRCDVA 58
Query: 371 DPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEI 550
VQ+T E+ K +G + ++N A N S R + L G+
Sbjct: 59 KEQDVQSTFQEMEKHLGPVNFLVNAAGINRDSLLVRTKTEDMISQLHTNLLGSMLTCKAA 118
Query: 551 GKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQ 730
K +I Q+G + + + +I G+ ++ K G+ S+SLA E ++ +R NV+
Sbjct: 119 MKTMI--QQGGSIVNVGSIIGLKGNVGQSAYSATKGGLVGFSRSLAKEVARKKIRVNVVA 176
Query: 731 PGPIKTKGAFSRLDPTGAFEKEMIDR-IPCGRLGTVEELANLATFLCSDYASWINGATIR 907
PG F R D T ++E + IP GR G E+A+ FL + +I G +
Sbjct: 177 PG-------FIRTDMTRHLKEEHFKKNIPLGRFGETLEVAHAVVFLLE--SPYITGHVLI 227
Query: 908 FDGGEQV 928
DGG Q+
Sbjct: 228 VDGGLQL 234
>ref|NP_001033027.2| dehydrogenase/reductase SDR family member 4 isoform 1 [Mus
musculus].
Length = 279
Score = 86.3 bits (212), Expect = 5e-17
Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 4/252 (1%)
Frame = +2
Query: 176 NTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASR---NIDILKATAEEISSQTGNKV 346
N K+A +T GIG + L+ GA V++SR N+D AT + G V
Sbjct: 29 NPLSNKVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQG----EGLSV 84
Query: 347 HAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGN-FISPTERLSPNAWKTITDIVLN 523
I C V + ++ +K DI+++NAA N F ++ W + I +
Sbjct: 85 TGIVCHVGKAEDREKLITTALKRHQGIDILVSNAAVNPFFGNLMDVTEEVWDKVLSINVT 144
Query: 524 GTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSK 703
TA + + ++ K + G + + + ++ T + P +K + ++K+ AAE +
Sbjct: 145 ATAMMIKAVVPEMEK-RGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELAP 203
Query: 704 YGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYAS 883
+R N + PG IKT+ + S L A E + + + RLG E+ A + +FLCS+ AS
Sbjct: 204 KNIRVNCLAPGLIKTRFS-SVLWEEKAREDFIKEAMQIRRLGKPEDCAGIVSFLCSEDAS 262
Query: 884 WINGATIRFDGG 919
+ING T+ GG
Sbjct: 263 YINGETVVVGGG 274
>ref|NP_082066.2| dehydrogenase/reductase member 2 [Mus musculus].
Length = 282
Score = 80.1 bits (196), Expect = 3e-15
Identities = 80/271 (29%), Positives = 115/271 (42%), Gaps = 16/271 (5%)
Frame = +2
Query: 152 FQKVMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASR---NIDILKATAEEI 322
F K + GK+A ITG GIG + L+ GA VI+SR N+D A I
Sbjct: 25 FSKTADENRSLAGKVAVITGSTRGIGFAIARRLAQDGAHVVISSRKQENVD----EAVTI 80
Query: 323 SSQTGNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGN-FISPTERLSPNAWK 499
+ G V C V Q+ V+ +K G D ++ A N + T S W
Sbjct: 81 LKEEGLSVTGTMCHVGKAEDRQHLVTTALKHSGGIDFLVCVAGVNPLVGSTLGASEQIWD 140
Query: 500 TITDIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFV-VPSA----SAKAGV 664
I D+ + A + ++ + + G+ L +G +V VP ++K +
Sbjct: 141 KILDVNVKSPALLLSKVLPYMENRRGGSVVLV------SSGVAYVPVPKLGVYNTSKTAL 194
Query: 665 EAMSKSLAAEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIP-------CGR 823
+ KSLA E + G+R N + PG IKT + EK M + +P R
Sbjct: 195 LGLCKSLAVELAPKGIRVNCLVPGIIKTDFSLR--------EKTMPNMLPDMNKIFGVKR 246
Query: 824 LGTVEELANLATFLCSDYASWINGATIRFDG 916
LG EE A L +FLCS AS+I G I G
Sbjct: 247 LGEPEECAGLVSFLCSSDASYITGENIMVAG 277
>ref|NP_031647.1| carbonyl reductase [NADPH] 2 [Mus musculus].
Length = 244
Score = 73.2 bits (178), Expect = 4e-13
Identities = 58/247 (23%), Positives = 111/247 (44%), Gaps = 1/247 (0%)
Frame = +2
Query: 182 FQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQC 361
F G A +TG G GIG+ L + GA+ V +R L + A+E + +
Sbjct: 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPG-----IEPVCV 59
Query: 362 DVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVT 541
D+ D + + + IG D+++NNAA + P ++ A+ + L V+
Sbjct: 60 DLGDWDATEKALGG----IGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVS 115
Query: 542 LEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFN 721
+ + +I + + ++++ A ++ +S K + ++K++A E + +R N
Sbjct: 116 QMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVN 175
Query: 722 VIQPGPIKT-KGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGA 898
+ P + T G DP F +++ +R P + VE++ N FL SD ++ +G
Sbjct: 176 SVNPTVVLTDMGKKVSADP--EFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGG 233
Query: 899 TIRFDGG 919
I D G
Sbjct: 234 GILVDAG 240
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,533,576
Number of extensions: 937362
Number of successful extensions: 2422
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 2382
Number of HSP's successfully gapped: 43
Length of query: 410
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 306
Effective length of database: 12,493,815
Effective search space: 3823107390
Effective search space used: 3823107390
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013766
(1232 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001350.1| 2,4-dienoyl-CoA reductase, mitochondrial precur... 571 e-163
Alignment gi|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo s... 155 9e-38
Alignment gi|NP_065715.1| peroxisomal 2,4-dienoyl-CoA reductase [Homo sap... 154 2e-37
Alignment gi|NP_057330.2| 17-beta-hydroxysteroid dehydrogenase 14 [Homo s... 97 2e-20
Alignment gi|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Ho... 93 6e-19
Alignment gi|NP_055049.1| estradiol 17-beta-dehydrogenase 8 [Homo sapiens]. 90 4e-18
Alignment gi|NP_116172.2| carbonyl reductase family member 4 [Homo sapien... 84 3e-16
Alignment gi|NP_057370.1| L-xylulose reductase isoform 1 [Homo sapiens]. 79 1e-14
Alignment gi|NP_001182147.1| L-xylulose reductase isoform 2 [Homo sapiens]. 72 8e-13
Alignment gi|NP_001075957.1| putative dehydrogenase/reductase SDR family ... 67 3e-11
>ref|NP_001350.1| 2,4-dienoyl-CoA reductase, mitochondrial precursor [Homo sapiens].
Length = 335
Score = 571 bits (1471), Expect = e-163
Identities = 286/324 (88%), Positives = 300/324 (92%)
Frame = +2
Query: 44 LGRVFAPGHGPRRFFTYGTKILYQSTEAFPSKSFPPFQKVMLPPNTFQGKLAFITGGGTG 223
LG G PRRFF+YGTKILYQ+TEA SK F P QK MLPPN+FQGK+AFITGGGTG
Sbjct: 11 LGSRLPCGLAPRRFFSYGTKILYQNTEALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTG 70
Query: 224 IGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVRDPNMVQNTVSE 403
+GK MTT LSSLGAQCVIASR +D+LKATAE+ISSQTGNKVHAIQCDVRDP+MVQNTVSE
Sbjct: 71 LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSE 130
Query: 404 LIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGA 583
LIKV GHP+IVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGA
Sbjct: 131 LIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGA 190
Query: 584 AFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQPGPIKTKGAFS 763
AFL+ITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEW KYGMRFNVIQPGPIKTKGAFS
Sbjct: 191 AFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFS 250
Query: 764 RLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATIRFDGGEQVLLSGE 943
RLDPTG FEKEMI RIPCGRLGTVEELANLA FLCSDYASWINGA I+FDGGE+VL+SGE
Sbjct: 251 RLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGE 310
Query: 944 FNHLRKVTKEQWDTIERLIRKTKG 1015
FN LRKVTKEQWDTIE LIRKTKG
Sbjct: 311 FNDLRKVTKEQWDTIEELIRKTKG 334
>ref|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens].
Length = 303
Score = 155 bits (391), Expect = 9e-38
Identities = 90/261 (34%), Positives = 140/261 (53%), Gaps = 7/261 (2%)
Frame = +2
Query: 167 LPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQ----T 334
L P QG++A +TGG TGIGK + L LG+ VIASR ++ LK+ A+E+ +
Sbjct: 11 LAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTK 70
Query: 335 GNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDI 514
+V IQC++R+ V N V + G + ++NN G F+SP E +S W + +
Sbjct: 71 QARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLET 130
Query: 515 VLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGF--VVPSASAKAGVEAMSKSLA 688
L GT ++ + +K G +I I T +GF V S +A+AGV ++KSLA
Sbjct: 131 NLTGTFYMCKAVYSSWMKEHGG----SIVNIIVPTKAGFPLAVHSGAARAGVYNLTKSLA 186
Query: 689 AEWSKYGMRFNVIQPGPIKTKGAFSRLDPTG-AFEKEMIDRIPCGRLGTVEELANLATFL 865
EW+ G+R N + PG I ++ A G +F + +IP R+G EE++++ FL
Sbjct: 187 LEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFL 246
Query: 866 CSDYASWINGATIRFDGGEQV 928
S AS+I G ++ DGG +
Sbjct: 247 LSPAASFITGQSVDVDGGRSL 267
>ref|NP_065715.1| peroxisomal 2,4-dienoyl-CoA reductase [Homo sapiens].
Length = 292
Score = 154 bits (388), Expect = 2e-37
Identities = 92/257 (35%), Positives = 133/257 (51%)
Frame = +2
Query: 149 PFQKVMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISS 328
P + + P+ + K+AFITGGG+GIG R+ G VIASR++ + A +++
Sbjct: 15 PAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAG 74
Query: 329 QTGNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTIT 508
TG + + DVR P V V + +K G DI+IN AAGNF+ P LS NA+KT+
Sbjct: 75 ATGRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVM 134
Query: 509 DIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLA 688
DI +GT V+ + ++ + G + IT G V + SAKA V+AM++ LA
Sbjct: 135 DIDTSGTFNVSRVLYEKFFR-DHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLA 193
Query: 689 AEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLC 868
EW +R N + PGPI RL A + P RLG E+A+ +L
Sbjct: 194 VEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLA 253
Query: 869 SDYASWINGATIRFDGG 919
S AS++ GA + DGG
Sbjct: 254 SPLASYVTGAVLVADGG 270
>ref|NP_057330.2| 17-beta-hydroxysteroid dehydrogenase 14 [Homo sapiens].
Length = 270
Score = 97.4 bits (241), Expect = 2e-20
Identities = 78/255 (30%), Positives = 123/255 (48%), Gaps = 6/255 (2%)
Frame = +2
Query: 182 FQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQC 361
+ GK+ +TGGG GIG + + GA+ VI ++ +A +E+ I C
Sbjct: 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAV-----FILC 61
Query: 362 DVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPT--ERLSPNAWKTITDIVLNGTAF 535
DV + V+ VSE I+ G D V+NNA G+ P E S ++ + ++ L GT
Sbjct: 62 DVTQEDDVKTLVSETIRRFGRLDCVVNNA-GHHPPPQRPEETSAQGFRQLLELNLLGTYT 120
Query: 536 VTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMR 715
+T L K+Q + I+++ G VP + K V AM+K+LA + S YG+R
Sbjct: 121 LTKLALPYLRKSQGNV--INISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVR 178
Query: 716 FNVIQPG----PIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYAS 883
N I PG P+ + A DP + M+ + P GR+G E+ A FL S+ A+
Sbjct: 179 VNCISPGNIWTPLWEELAALMPDPRATIREGMLAQ-PLGRMGQPAEVGAAAVFLASE-AN 236
Query: 884 WINGATIRFDGGEQV 928
+ G + GG ++
Sbjct: 237 FCTGIELLVTGGAEL 251
>ref|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Homo sapiens].
Length = 278
Score = 92.8 bits (229), Expect = 6e-19
Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 6/249 (2%)
Frame = +2
Query: 191 KLAFITGGGTGIGKRMTTHLSSLGAQCVIASR---NIDILKATAE-EISSQTGNKVHAIQ 358
K+A +T GIG + L+ GA V++SR N+D AT + E S TG H +
Sbjct: 33 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGK 92
Query: 359 CDVRDPNMVQNTVSELIKVIGHPDIVINNAAGN-FISPTERLSPNAWKTITDIVLNGTAF 535
+ R+ V+ +K+ G DI+++NAA N F ++ W DI + A
Sbjct: 93 AEDRE-----RLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPAL 147
Query: 536 VTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMR 715
+T + ++ K + G + + +++I A + S P +K + ++K+LA E + +R
Sbjct: 148 MTKAVVPEMEK-RGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIR 206
Query: 716 FNVIQPGPIKTKGAFSR-LDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWIN 892
N + PG IKT +FSR L E+ M + + RLG E+ A + +FLCS+ AS+I
Sbjct: 207 VNCLAPGLIKT--SFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYIT 264
Query: 893 GATIRFDGG 919
G T+ GG
Sbjct: 265 GETVVVGGG 273
>ref|NP_055049.1| estradiol 17-beta-dehydrogenase 8 [Homo sapiens].
Length = 261
Score = 90.1 bits (222), Expect = 4e-18
Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 10/258 (3%)
Frame = +2
Query: 176 NTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVI-------ASRNIDILKATAEEISSQT 334
N + LA +TG G+GIG+ ++ L+ GA A + +L +
Sbjct: 7 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPR 66
Query: 335 GNKVHAIQCDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTE---RLSPNAWKTI 505
GN A Q DV + + + ++ P V+ + AG I+ E +S + W +
Sbjct: 67 GNHA-AFQADVSEARAARCLLEQVQACFSRPPSVVVSCAG--ITQDEFLLHMSEDDWDKV 123
Query: 506 TDIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSL 685
+ L GT VT + L+ + + I++I + G+ A++KAGV ++++
Sbjct: 124 IAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTA 183
Query: 686 AAEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFL 865
A E ++G+R N + PG I T ++ P +K + + IP G LG E++A++ FL
Sbjct: 184 ARELGRHGIRCNSVLPGFIAT--PMTQKVPQKVVDK-ITEMIPMGHLGDPEDVADVVAFL 240
Query: 866 CSDYASWINGATIRFDGG 919
S+ + +I G ++ GG
Sbjct: 241 ASEDSGYITGTSVEVTGG 258
>ref|NP_116172.2| carbonyl reductase family member 4 [Homo sapiens].
Length = 237
Score = 84.0 bits (206), Expect = 3e-16
Identities = 71/249 (28%), Positives = 116/249 (46%), Gaps = 1/249 (0%)
Frame = +2
Query: 191 KLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDVR 370
K+ + GG GIG+ + ++ G + + +RN++ KA A ++ G A CDV
Sbjct: 3 KVCAVFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAGDL----GGDHLAFSCDVA 58
Query: 371 DPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEI 550
+ VQNT EL K +G + ++N A N R + L G+
Sbjct: 59 KEHDVQNTFEELEKHLGRVNFLVNAAGINRDGLLVRTKTEDMVSQLHTNLLGSMLTCKAA 118
Query: 551 GKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVIQ 730
+ +I+ Q G+ + + + SG V SAS K G+ S++LA E ++ +R NV+
Sbjct: 119 MRTMIQQQGGSIVNVGSIVGLKGNSGQSVYSAS-KGGLVGFSRALAKEVARKKIRVNVVA 177
Query: 731 PGPIKTKGAFSRLDPTGAFEKEMIDR-IPCGRLGTVEELANLATFLCSDYASWINGATIR 907
PG F D T ++E + + IP GR G E+A+ FL + +I G +
Sbjct: 178 PG-------FVHTDMTKDLKEEHLKKNIPLGRFGETIEVAHAVVFLLE--SPYITGHVLV 228
Query: 908 FDGGEQVLL 934
DGG Q++L
Sbjct: 229 VDGGLQLIL 237
>ref|NP_057370.1| L-xylulose reductase isoform 1 [Homo sapiens].
Length = 244
Score = 78.6 bits (192), Expect = 1e-14
Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 1/245 (0%)
Frame = +2
Query: 188 GKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDV 367
G+ +TG G GIG+ L + GA+ V SR L + E + + D+
Sbjct: 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG-----IEPVCVDL 61
Query: 368 RDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLE 547
D + + +G D+++NNAA + P ++ A+ ++ L V+
Sbjct: 62 GDWEATERALGS----VGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQI 117
Query: 548 IGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVI 727
+ + LI A + +++ ++ S K ++ ++K +A E + +R N +
Sbjct: 118 VARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAV 177
Query: 728 QPGPIKTK-GAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATI 904
P + T G + DP A K M++RIP G+ VE + N FL SD + G+T+
Sbjct: 178 NPTVVMTSMGQATWSDPHKA--KTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTL 235
Query: 905 RFDGG 919
+GG
Sbjct: 236 PVEGG 240
>ref|NP_001182147.1| L-xylulose reductase isoform 2 [Homo sapiens].
Length = 242
Score = 72.4 bits (176), Expect = 8e-13
Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 1/245 (0%)
Frame = +2
Query: 188 GKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGNKVHAIQCDV 367
G+ +TG G G G H + GA+ V SR L + E + + D+
Sbjct: 7 GRRVLVTGAGKGRGTVQALHAT--GARVVAVSRTQADLDSLVRECPG-----IEPVCVDL 59
Query: 368 RDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLE 547
D + + +G D+++NNAA + P ++ A+ ++ L V+
Sbjct: 60 GDWEATERALGS----VGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQI 115
Query: 548 IGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRFNVI 727
+ + LI A + +++ ++ S K ++ ++K +A E + +R N +
Sbjct: 116 VARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAV 175
Query: 728 QPGPIKTK-GAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWINGATI 904
P + T G + DP A K M++RIP G+ VE + N FL SD + G+T+
Sbjct: 176 NPTVVMTSMGQATWSDPHKA--KTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTL 233
Query: 905 RFDGG 919
+GG
Sbjct: 234 PVEGG 238
>ref|NP_001075957.1| putative dehydrogenase/reductase SDR family member 4-like 2 [Homo
sapiens].
Length = 281
Score = 67.4 bits (163), Expect = 3e-11
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 7/250 (2%)
Frame = +2
Query: 191 KLAFITGGGTGIGKRMTTHLSSLGAQCVIASR---NIDILKATAE-EISSQTGNKVHAIQ 358
K+A +T IG + L+ GA V++ R N+D AT + E S TG H +
Sbjct: 33 KVALVTASTDWIGFAVAQRLAQDGAHVVVSRRKQQNVDQAVATLQGEGLSMTGTVCHVGK 92
Query: 359 CDVRDPNMVQNTVSELIKVIGHPDIVINNAA-GNFISPTERLSPNAWKTITDIVLNGTAF 535
++D + T +L VI + I N+ G F + + AW DI A
Sbjct: 93 --MKDWERLVATAMKLHGVIDILSLSITNSKRGLFWFTLLQTAEEAWDRNLDINGKALAL 150
Query: 536 VTLEIGKQLIKAQKGAA-FLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGM 712
+ + ++ K G+ FLA + GF P +K + ++K+LA E + +
Sbjct: 151 MIKAVVPEMEKRGGGSVGFLASVAAFRPL-PGFS-PYNVSKTALLGLNKTLAIELAPRNI 208
Query: 713 RFNVIQPGPIKTKGAFSR-LDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWI 889
R N + PG IKT +FSR L E+ M + + RLG E+ + +FLCS+ AS++
Sbjct: 209 RVNCLAPGLIKT--SFSRMLWMDKEKEESMKETLRIRRLGEPEDSLGIVSFLCSEDASYL 266
Query: 890 NGATIRFDGG 919
G T+ GG
Sbjct: 267 TGETVMVGGG 276
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,929,378
Number of extensions: 1088536
Number of successful extensions: 3037
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 3001
Number of HSP's successfully gapped: 43
Length of query: 410
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,835,944
Effective search space: 4524962920
Effective search space used: 4524962920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013766
(1232 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 396 e-107
>Sscrofa_Chr04
|| Length = 143465943
Score = 396 bits (200), Expect = e-107
Identities = 203/204 (99%)
Strand = Plus / Minus
Query: 82 gtttttcacttatggaacaaaaatattgtatcaaagcactgaagcttttccgtctaagtc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51229378 gtttttcacttatggaacaaaaatattgtatcaaagcactgaagcttttccgtctaagtc 51229319
Query: 142 cttcccaccctttcaaaaagtgatgctgccaccaaatacttttcaaggaaaactagcatt 201
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 51229318 cttcccaccctttcaaaaagtgatgctgccaccaaatacttttcaaggaaaagtagcatt 51229259
Query: 202 cattaccgggggaggaactggcattggtaaaagaatgacaactcatctgtccagcttagg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51229258 cattaccgggggaggaactggcattggtaaaagaatgacaactcatctgtccagcttagg 51229199
Query: 262 tgcacagtgtgtgatagccagccg 285
||||||||||||||||||||||||
Sbjct: 51229198 tgcacagtgtgtgatagccagccg 51229175
Score = 367 bits (185), Expect = 1e-98
Identities = 259/273 (94%), Gaps = 8/273 (2%)
Strand = Plus / Minus
Query: 960 aggttaccaaggaacagtgggatacaatagaaagactcatcaggaagacaaaaggtctct 1019
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 51209108 aggttaccaaggaacagtgggatacaatagaaggactcatcaggaagacaaaaggctcct 51209049
Query: 1020 aagactactctggcctccatcatggttataatggaaatgatacaaactctctataatctt 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51209048 aagactactctggcctccatcatggttataatggaaatgatacaaactctctataatctt 51208989
Query: 1080 ttgagtatttttgagtctaatgattgtt-attagcagaca-tcattgggtatgtgttatg 1137
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 51208988 ttgagtatttttgagtctaatgattgttaattagcagacattcattgggtatgtgttatg 51208929
Query: 1138 tgc-aggctaacgataggt-aatcttgaatattaaaaggt-aataagat-ggaaattgtc 1193
||| ||||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||
Sbjct: 51208928 tgcaaggctaacgataggtaaatcttgaatattaaaaggtaaataagatgggatattgtc 51208869
Query: 1194 cctgc-aagaatttttt-aaaataatacaaaaa 1224
||||| |||| |||||| |||||||||||||||
Sbjct: 51208868 cctgcaaagagttttttaaaaataatacaaaaa 51208836
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 749 aagggtgcttttagccgtcttgacccaactggagcatttgagaaagaaatgattgacaga 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51210404 aagggtgcttttagccgtcttgacccaactggagcatttgagaaagaaatgattgacaga 51210345
Query: 809 attccctgtggtcggctaggaactgtggaagaacttgcaaatcttgctactttcctttgc 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51210344 attccctgtggtcggctaggaactgtggaagaacttgcaaatcttgctactttcctttgc 51210285
Query: 869 agtgattatgcttcttggattaatggagct 898
||||||||||||||||||||||||||||||
Sbjct: 51210284 agtgattatgcttcttggattaatggagct 51210255
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 431 attgtgataaacaatgcagcaggaaattttatctcccccactgaaagactctctcctaat 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51225362 attgtgataaacaatgcagcaggaaattttatctcccccactgaaagactctctcctaat 51225303
Query: 491 gcctggaagaccataactgacatagttctaaatggtacagcatttgtgacactagaaatt 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51225302 gcctggaagaccataactgacatagttctaaatggtacagcatttgtgacactagaaatt 51225243
Query: 551 gggaagcaactaattaaagcacagaaagg 579
|||||||||||||||||||||||||||||
Sbjct: 51225242 gggaagcaactaattaaagcacagaaagg 51225214
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 577 aggagcagcatttcttgctattacaaccatctatgccgagactgggtcaggttttgtggt 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51216739 aggagcagcatttcttgctattacaaccatctatgccgagactgggtcaggttttgtggt 51216680
Query: 637 accaagtgcttctgccaaagcaggagtggaagccatgagcaagt 680
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51216679 accaagtgcttctgccaaagcaggagtggaagccatgagcaagt 51216636
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 342 aggttcatgcaattcagtgtgatgtgagggatcctaatatggtgcagaacactgtgtcag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51227438 aggttcatgcaattcagtgtgatgtgagggatcctaatatggtgcagaacactgtgtcag 51227379
Query: 402 aactgatcaaagtcataggacatcctgat 430
|||||||||||||||||||||||||||||
Sbjct: 51227378 aactgatcaaagtcataggacatcctgat 51227350
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1 cgcccccgcgcgttcctgcgcggagagacaaaacatggcgctgctaggccgggttttcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51243866 cgcccccgcgcgttcctgcgcggagagacaaaacatggcgctgctaggccgggttttcgc 51243807
Query: 61 ccctggacacggtcctcggcgg 82
||||||||||||||||||||||
Sbjct: 51243806 ccctggacacggtcctcggcgg 51243785
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 679 gtctcttgcagctgaatggagtaaatatggaatgcgattcaatgtgattcaaccagggcc 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51212171 gtctcttgcagctgaatggagtaaatatggaatgcgattcaatgtgattcaaccagggcc 51212112
Query: 739 tataaaaaccaagg 752
||||||||||||||
Sbjct: 51212111 tataaaaaccaagg 51212098
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 899 acaattagatttgatggtggggagcaagtactactttcaggggaattcaaccatctgcgg 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51209261 acaattagatttgatggtggggagcaagtactactttcaggggaattcaaccatctgcgg 51209202
Query: 959 aaggt 963
|||||
Sbjct: 51209201 aaggt 51209197
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 285 gaaatattgacattttgaaagctactgcggaagaaatttcttctcaaactggaaataagg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51227594 gaaatattgacattttgaaagctactgcggaagaaatttcttctcaaactggaaataagg 51227535
Query: 345 t 345
|
Sbjct: 51227534 t 51227534
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,113,509
Number of extensions: 327
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 10
Length of query: 1232
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1211
Effective length of database: 2,808,413,156
Effective search space: 3400988331916
Effective search space used: 3400988331916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)