Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013767
(1756 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535172.2| PREDICTED: similar to YME1-like 1 isoform 3 [Ca... 1025 0.0
Alignment gi|XP_547682.2| PREDICTED: similar to AFG3-like protein 2 (Para... 251 2e-66
Alignment gi|XP_546777.2| PREDICTED: similar to Paraplegin (Spastic parap... 229 8e-60
Alignment gi|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (S... 182 1e-45
Alignment gi|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (S... 182 1e-45
Alignment gi|XP_866203.1| PREDICTED: similar to Transitional endoplasmic ... 179 1e-44
Alignment gi|XP_866191.1| PREDICTED: similar to Transitional endoplasmic ... 179 1e-44
Alignment gi|XP_866167.1| PREDICTED: similar to Transitional endoplasmic ... 179 1e-44
Alignment gi|XP_866152.1| PREDICTED: similar to Transitional endoplasmic ... 179 1e-44
Alignment gi|XP_866137.1| PREDICTED: similar to Transitional endoplasmic ... 179 1e-44
>ref|XP_535172.2| PREDICTED: similar to YME1-like 1 isoform 3 [Canis familiaris].
Length = 804
Score = 1025 bits (2649), Expect(2) = 0.0
Identities = 514/547 (93%), Positives = 533/547 (97%)
Frame = +1
Query: 88 QFRQAGEVAEGPEKMFSLSSTVQPQVTVPLSHLINAFHSPKNTSISVSASFSQNQHRDVV 267
+F QAGEVAEGPE+MFSLSSTVQPQVTVPLSHLINAFHSPK TSISVSAS SQNQHRDVV
Sbjct: 76 RFWQAGEVAEGPEEMFSLSSTVQPQVTVPLSHLINAFHSPKTTSISVSASASQNQHRDVV 135
Query: 268 PEHEAPSSEPILNLRDLGLSELKIGQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFE 447
PEHEAP +E +LNLRDLGLS+LKIGQIDQLVDSLLPGFC+GK+VSSHWHTSHVSAQSFFE
Sbjct: 136 PEHEAPGNESVLNLRDLGLSDLKIGQIDQLVDSLLPGFCEGKSVSSHWHTSHVSAQSFFE 195
Query: 448 NKYGSLDIFSTLRSSCLYRQHSRTLKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSER 627
NKYG LD+F+TLRSSCLYRQHSRTLK ICSDLQYWPVF+QSRGFKTLKSRTRRLQSTSER
Sbjct: 196 NKYGYLDMFTTLRSSCLYRQHSRTLKSICSDLQYWPVFIQSRGFKTLKSRTRRLQSTSER 255
Query: 628 LAETQHTAPSFVKGFLLRDRGSDIESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQ 807
LAETQH APSFVKGFLLRDRGSD+ESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQAL Q
Sbjct: 256 LAETQHIAPSFVKGFLLRDRGSDVESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALMQ 315
Query: 808 KTNDSLRRTRLIVFILLVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGV 987
KTNDSLRRTRLI+F+LL+ GIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGV
Sbjct: 316 KTNDSLRRTRLILFVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGV 375
Query: 988 EEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYAS 1167
EEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYAS
Sbjct: 376 EEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYAS 435
Query: 1168 GSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLL 1347
GSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLL
Sbjct: 436 GSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLL 495
Query: 1348 AEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIK 1527
AEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIK
Sbjct: 496 AEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIK 555
Query: 1528 FDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFFKDKVLMGPERK 1707
FDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEF KDK+LMGPER+
Sbjct: 556 FDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERR 615
Query: 1708 VWKLNTK 1728
+++ K
Sbjct: 616 SVEIDNK 622
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 1724 QNKTITAYHES 1756
+NKTITAYHES
Sbjct: 622 KNKTITAYHES 632
>ref|XP_547682.2| PREDICTED: similar to AFG3-like protein 2 (Paraplegin-like protein)
[Canis familiaris].
Length = 806
Score = 251 bits (640), Expect = 2e-66
Identities = 133/264 (50%), Positives = 177/264 (67%), Gaps = 6/264 (2%)
Frame = +1
Query: 958 NVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAG 1137
+V F+ V G EEAK E+ E V FLKNP+++ LG K+PKG +L GPPGTGKTLLA+A AG
Sbjct: 305 DVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAG 364
Query: 1138 EADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHP 1317
EA+VPF SGSEF EMFVGVG +R+R+LF A+ NAPC++FIDE+D+VG KR
Sbjct: 365 EANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGG 424
Query: 1318 YSRQ--TINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGR 1491
S Q T+NQLL EMDGF V+I+ TN P+ LD AL+RPGRFD Q+ + PD+KGR
Sbjct: 425 QSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGR 484
Query: 1492 TEILKWYLNKIKFDQSVDPEIIARG----TVGFSGAELENLVNQAALKAAVDGKEMVTMK 1659
I K +L +K D +++ E +AR T GFSGA++ N+ N+AAL AA + + K
Sbjct: 485 ASIFKVHLRPLKLDSALEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQK 544
Query: 1660 ELEFFKDKVLMGPERKVWKLNTKQ 1731
E ++V+ G E+K L ++
Sbjct: 545 HFEQAIERVIGGLEKKTQVLQPEE 568
>ref|XP_546777.2| PREDICTED: similar to Paraplegin (Spastic paraplegia protein 7)
[Canis familiaris].
Length = 917
Score = 229 bits (583), Expect = 8e-60
Identities = 123/263 (46%), Positives = 176/263 (66%), Gaps = 6/263 (2%)
Frame = +1
Query: 937 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTL 1116
VD K V+F+ V G+ EAK E++E V++LK+P++F LG K+PKG LL+GPPG GKTL
Sbjct: 422 VDGKMGKGVSFKDVAGMHEAKLEVKEFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTL 481
Query: 1117 LARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKR 1296
LA+AVA EA VPF +G EF E+ G+GA+R+R+LF+EA+A APC+++IDE+D+VG KR
Sbjct: 482 LAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKR 541
Query: 1297 IESPMHPYS----RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 1464
+ M +S QT+NQLL EMDG + VI++ +TN + LDNAL+RPGR D V
Sbjct: 542 -STTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDNALLRPGRLDRHVF 600
Query: 1465 VPRPDVKGRTEILKWYLNKIKFDQ--SVDPEIIARGTVGFSGAELENLVNQAALKAAVDG 1638
+ P ++ R EI + +L +K Q S + +A T GFSGA++ N+ N+AAL AA +G
Sbjct: 601 IDLPTLQERREIFEHHLKSLKLTQASSFYSQRLAELTPGFSGADIANICNEAALHAAREG 660
Query: 1639 KEMVTMKELEFFKDKVLMGPERK 1707
V E+ ++V+ G +K
Sbjct: 661 HTSVHTFNFEYAVERVIAGTAKK 683
>ref|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 3 [Canis
familiaris].
Length = 327
Score = 182 bits (461), Expect = 1e-45
Identities = 105/280 (37%), Positives = 168/280 (60%), Gaps = 16/280 (5%)
Frame = +1
Query: 925 LDSAVDPV-------QMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGI 1080
L + VDP+ ++ + T+E + G+++ +E++EV+E +K+P+ F LG PKG+
Sbjct: 48 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGV 107
Query: 1081 LLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVI 1260
LL GPPGTGKTLLARAVA D F SGSE + F+G GA +R LF A+ +AP +I
Sbjct: 108 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 167
Query: 1261 FIDELDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALI 1434
F+DE+DS+G R+E S ++T+ +LL ++DGF+ + + +I ATN + LD+AL+
Sbjct: 168 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 227
Query: 1435 RPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQA 1614
RPGR D ++ P P+ + R +ILK + K+ + ++ IA G SGAE++ + +A
Sbjct: 228 RPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 287
Query: 1615 ALKAAVDGKEMVTMKELEFFKDKVLMGPE------RKVWK 1716
+ A + + VT ++ E KV+ +K+WK
Sbjct: 288 GMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 327
>ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1 [Canis
familiaris].
Length = 406
Score = 182 bits (461), Expect = 1e-45
Identities = 105/280 (37%), Positives = 168/280 (60%), Gaps = 16/280 (5%)
Frame = +1
Query: 925 LDSAVDPV-------QMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGI 1080
L + VDP+ ++ + T+E + G+++ +E++EV+E +K+P+ F LG PKG+
Sbjct: 127 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGV 186
Query: 1081 LLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVI 1260
LL GPPGTGKTLLARAVA D F SGSE + F+G GA +R LF A+ +AP +I
Sbjct: 187 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 246
Query: 1261 FIDELDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALI 1434
F+DE+DS+G R+E S ++T+ +LL ++DGF+ + + +I ATN + LD+AL+
Sbjct: 247 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 306
Query: 1435 RPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQA 1614
RPGR D ++ P P+ + R +ILK + K+ + ++ IA G SGAE++ + +A
Sbjct: 307 RPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366
Query: 1615 ALKAAVDGKEMVTMKELEFFKDKVLMGPE------RKVWK 1716
+ A + + VT ++ E KV+ +K+WK
Sbjct: 367 GMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
>ref|XP_866203.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 13 [Canis
familiaris].
Length = 810
Score = 179 bits (453), Expect = 1e-44
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Frame = +1
Query: 946 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLA 1122
V++ VT+E + G+E+ K+ELQE+V++ +++P KF G KG+L GPPG GKTLLA
Sbjct: 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528
Query: 1123 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVG---GK 1293
+A+A E F G E M+ G + +R +F +A+ APCV+F DELDS+ G
Sbjct: 529 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 588
Query: 1294 RIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPR 1473
I R INQ+L EMDG + V IIGATN P+ +D A++RPGR D + +P
Sbjct: 589 NIGDGGGAADR-VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1474 PDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVT 1653
PD K R ILK L K + VD E +A+ T GFSGA+L + +A A + E
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707
Query: 1654 MKELE 1668
+E E
Sbjct: 708 RRERE 712
Score = 173 bits (439), Expect = 4e-43
Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 1/238 (0%)
Frame = +1
Query: 952 MKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARA 1128
+ V ++ + G + +++E+VE L++P F +G K P+GILL GPPGTGKTL+ARA
Sbjct: 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257
Query: 1129 VAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESP 1308
VA E F+ +G E G S +R F EA+ NAP +IFIDELD++ KR E
Sbjct: 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKT 316
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
R+ ++QLL MDG K VI++ ATN P ++D AL R GRFD +V + PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R EIL+ + +K VD E +A T G GA+L L ++AAL+A +++ +++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>ref|XP_866191.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 12 [Canis
familiaris].
Length = 819
Score = 179 bits (453), Expect = 1e-44
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Frame = +1
Query: 946 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLA 1122
V++ VT+E + G+E+ K+ELQE+V++ +++P KF G KG+L GPPG GKTLLA
Sbjct: 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528
Query: 1123 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVG---GK 1293
+A+A E F G E M+ G + +R +F +A+ APCV+F DELDS+ G
Sbjct: 529 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 588
Query: 1294 RIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPR 1473
I R INQ+L EMDG + V IIGATN P+ +D A++RPGR D + +P
Sbjct: 589 NIGDGGGAADR-VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1474 PDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVT 1653
PD K R ILK L K + VD E +A+ T GFSGA+L + +A A + E
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707
Query: 1654 MKELE 1668
+E E
Sbjct: 708 RRERE 712
Score = 173 bits (439), Expect = 4e-43
Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 1/238 (0%)
Frame = +1
Query: 952 MKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARA 1128
+ V ++ + G + +++E+VE L++P F +G K P+GILL GPPGTGKTL+ARA
Sbjct: 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257
Query: 1129 VAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESP 1308
VA E F+ +G E G S +R F EA+ NAP +IFIDELD++ KR E
Sbjct: 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKT 316
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
R+ ++QLL MDG K VI++ ATN P ++D AL R GRFD +V + PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R EIL+ + +K VD E +A T G GA+L L ++AAL+A +++ +++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>ref|XP_866167.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 11 [Canis
familiaris].
Length = 776
Score = 179 bits (453), Expect = 1e-44
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Frame = +1
Query: 946 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLA 1122
V++ VT+E + G+E+ K+ELQE+V++ +++P KF G KG+L GPPG GKTLLA
Sbjct: 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528
Query: 1123 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVG---GK 1293
+A+A E F G E M+ G + +R +F +A+ APCV+F DELDS+ G
Sbjct: 529 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 588
Query: 1294 RIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPR 1473
I R INQ+L EMDG + V IIGATN P+ +D A++RPGR D + +P
Sbjct: 589 NIGDGGGAADR-VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1474 PDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVT 1653
PD K R ILK L K + VD E +A+ T GFSGA+L + +A A + E
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707
Query: 1654 MKELE 1668
+E E
Sbjct: 708 RRERE 712
Score = 173 bits (439), Expect = 4e-43
Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 1/238 (0%)
Frame = +1
Query: 952 MKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARA 1128
+ V ++ + G + +++E+VE L++P F +G K P+GILL GPPGTGKTL+ARA
Sbjct: 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257
Query: 1129 VAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESP 1308
VA E F+ +G E G S +R F EA+ NAP +IFIDELD++ KR E
Sbjct: 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKT 316
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
R+ ++QLL MDG K VI++ ATN P ++D AL R GRFD +V + PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R EIL+ + +K VD E +A T G GA+L L ++AAL+A +++ +++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>ref|XP_866152.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 10 [Canis
familiaris].
Length = 762
Score = 179 bits (453), Expect = 1e-44
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Frame = +1
Query: 946 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLA 1122
V++ VT+E + G+E+ K+ELQE+V++ +++P KF G KG+L GPPG GKTLLA
Sbjct: 425 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 484
Query: 1123 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVG---GK 1293
+A+A E F G E M+ G + +R +F +A+ APCV+F DELDS+ G
Sbjct: 485 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 544
Query: 1294 RIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPR 1473
I R INQ+L EMDG + V IIGATN P+ +D A++RPGR D + +P
Sbjct: 545 NIGDGGGAADR-VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 603
Query: 1474 PDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVT 1653
PD K R ILK L K + VD E +A+ T GFSGA+L + +A A + E
Sbjct: 604 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 663
Query: 1654 MKELE 1668
+E E
Sbjct: 664 RRERE 668
Score = 157 bits (397), Expect = 3e-38
Identities = 87/198 (43%), Positives = 119/198 (60%)
Frame = +1
Query: 1069 PKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANA 1248
P+GILL GPPGTGKTL+ARAVA E F+ +G E G S +R F EA+ NA
Sbjct: 194 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA 253
Query: 1249 PCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNA 1428
P +IFIDELD++ KR E R+ ++QLL MDG K VI++ ATN P ++D A
Sbjct: 254 PAIIFIDELDAIAPKR-EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 312
Query: 1429 LIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVN 1608
L R GRFD +V + PD GR EIL+ + +K VD E +A T G GA+L L +
Sbjct: 313 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 372
Query: 1609 QAALKAAVDGKEMVTMKE 1662
+AAL+A +++ +++
Sbjct: 373 EAALQAIRKKMDLIDLED 390
>ref|XP_866137.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 9 [Canis
familiaris].
Length = 787
Score = 179 bits (453), Expect = 1e-44
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Frame = +1
Query: 946 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLA 1122
V++ VT+E + G+E+ K+ELQE+V++ +++P KF G KG+L GPPG GKTLLA
Sbjct: 450 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 509
Query: 1123 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVG---GK 1293
+A+A E F G E M+ G + +R +F +A+ APCV+F DELDS+ G
Sbjct: 510 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 569
Query: 1294 RIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPR 1473
I R INQ+L EMDG + V IIGATN P+ +D A++RPGR D + +P
Sbjct: 570 NIGDGGGAADR-VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 628
Query: 1474 PDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVT 1653
PD K R ILK L K + VD E +A+ T GFSGA+L + +A A + E
Sbjct: 629 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 688
Query: 1654 MKELE 1668
+E E
Sbjct: 689 RRERE 693
Score = 142 bits (357), Expect = 1e-33
Identities = 85/238 (35%), Positives = 127/238 (53%), Gaps = 1/238 (0%)
Frame = +1
Query: 952 MKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARA 1128
+ V ++ + G + +++E+VE L++P F +G K P+GILL GPPGTGKTL+ARA
Sbjct: 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257
Query: 1129 VAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESP 1308
VA E F+ +G E G S +R F EA+ N +
Sbjct: 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNTHGEV---------------- 301
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
R+ ++QLL MDG K VI++ ATN P ++D AL R GRFD +V + PD G
Sbjct: 302 ----ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 357
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R EIL+ + +K VD E +A T G GA+L L ++AAL+A +++ +++
Sbjct: 358 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 415
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,024,782
Number of extensions: 1463536
Number of successful extensions: 5016
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 4886
Number of HSP's successfully gapped: 87
Length of query: 585
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 477
Effective length of database: 15,274,216
Effective search space: 7285801032
Effective search space used: 7285801032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013767
(1756 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095320.1| ATP-dependent metalloprotease YME1L1 [Bos ta... 1014 0.0
Alignment gi|NP_001039676.1| AFG3-like protein 2 [Bos taurus]. 251 2e-66
Alignment gi|XP_002694913.1| PREDICTED: AFG3(ATPase family gene 3)-like 1... 244 2e-64
Alignment gi|XP_612083.4| PREDICTED: AFG3(ATPase family gene 3)-like 1-li... 244 2e-64
Alignment gi|NP_001095492.1| paraplegin [Bos taurus]. 229 4e-60
Alignment gi|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus]. 182 1e-45
Alignment gi|NP_001029466.1| transitional endoplasmic reticulum ATPase [B... 179 9e-45
Alignment gi|NP_001015639.1| 26S protease regulatory subunit 7 [Bos tauru... 172 7e-43
Alignment gi|NP_001039705.1| 26S protease regulatory subunit 10B [Bos tau... 166 6e-41
Alignment gi|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taur... 160 3e-39
>ref|NP_001095320.1| ATP-dependent metalloprotease YME1L1 [Bos taurus].
Length = 717
Score = 1014 bits (2623), Expect(2) = 0.0
Identities = 512/533 (96%), Positives = 522/533 (97%)
Frame = +1
Query: 130 MFSLSSTVQPQVTVPLSHLINAFHSPKNTSISVSASFSQNQHRDVVPEHEAPSSEPILNL 309
MFSLSSTVQPQVTVPLSHLINAFHSPKNT +SVSAS SQNQHRDVV EHEAPS+EP+LNL
Sbjct: 1 MFSLSSTVQPQVTVPLSHLINAFHSPKNTPVSVSASISQNQHRDVVSEHEAPSNEPVLNL 60
Query: 310 RDLGLSELKIGQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYGSLDIFSTLRS 489
RDLGLSELKIGQIDQLVDSLLPGF K KNVSSHWHTSHVSAQSFFENKYG LDIFSTLRS
Sbjct: 61 RDLGLSELKIGQIDQLVDSLLPGFYKDKNVSSHWHTSHVSAQSFFENKYGCLDIFSTLRS 120
Query: 490 SCLYRQHSRTLKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKG 669
SCLYRQHSRTLKRICSDLQYWP F+QSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKG
Sbjct: 121 SCLYRQHSRTLKRICSDLQYWPGFIQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKG 180
Query: 670 FLLRDRGSDIESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVF 849
FLLRDRGSD+ESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVF
Sbjct: 181 FLLRDRGSDVESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVF 240
Query: 850 ILLVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFL 1029
ILLVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFL
Sbjct: 241 ILLVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFL 300
Query: 1030 KNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGAS 1209
KNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGAS
Sbjct: 301 KNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGAS 360
Query: 1210 RIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVII 1389
RIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVII
Sbjct: 361 RIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVII 420
Query: 1390 IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGT 1569
IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGT
Sbjct: 421 IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGT 480
Query: 1570 VGFSGAELENLVNQAALKAAVDGKEMVTMKELEFFKDKVLMGPERKVWKLNTK 1728
VGFSGAELENLVNQAALKAAVDGKEMVTMKELEF KDK+LMGPER+ +++ K
Sbjct: 481 VGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNK 533
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 1724 QNKTITAYHES 1756
+NKTITAYHES
Sbjct: 533 KNKTITAYHES 543
>ref|NP_001039676.1| AFG3-like protein 2 [Bos taurus].
Length = 805
Score = 251 bits (640), Expect = 2e-66
Identities = 133/264 (50%), Positives = 177/264 (67%), Gaps = 6/264 (2%)
Frame = +1
Query: 958 NVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAG 1137
+V F+ V G EEAK E+ E V FLKNP+++ LG K+PKG +L GPPGTGKTLLA+A AG
Sbjct: 305 DVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAG 364
Query: 1138 EADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHP 1317
EA+VPF SGSEF EMFVGVG +R+R+LF A+ NAPC++FIDE+D+VG KR
Sbjct: 365 EANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGG 424
Query: 1318 YSRQ--TINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGR 1491
S Q T+NQLL EMDGF V+I+ TN P+ LD AL+RPGRFD Q+ + PD+KGR
Sbjct: 425 QSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGR 484
Query: 1492 TEILKWYLNKIKFDQSVDPEIIARG----TVGFSGAELENLVNQAALKAAVDGKEMVTMK 1659
I K +L +K D +++ E +AR T GFSGA++ N+ N+AAL AA + + K
Sbjct: 485 ASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQK 544
Query: 1660 ELEFFKDKVLMGPERKVWKLNTKQ 1731
E ++V+ G E+K L ++
Sbjct: 545 HFEQAIERVIGGLEKKTQVLQPEE 568
>ref|XP_002694913.1| PREDICTED: AFG3(ATPase family gene 3)-like 1-like [Bos taurus].
Length = 845
Score = 244 bits (622), Expect = 2e-64
Identities = 135/317 (42%), Positives = 195/317 (61%), Gaps = 11/317 (3%)
Frame = +1
Query: 790 AQALTQKTNDSLRRTRLIVFILLVVGIYGLLKNPF---LSVRFRTTTGLDSAVDPVQMKN 960
A T +++ + R+ + +L+ + +Y + + P R G+ + + +
Sbjct: 213 AVVYTTESDGTFLRSLVPTLLLIGIFLYAMRRGPMGAGRGGRGGRLFGIGETIAKIIKDD 272
Query: 961 --VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVA 1134
V F V G EEAK E+ E V FLKNP+++ LG K+PKG LL GPPGTGKTLLA+A A
Sbjct: 273 IGVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGALLTGPPGTGKTLLAKATA 332
Query: 1135 GEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMH 1314
GEA VPF +GSEF EMFVGVG +R+R++F A+ NAPC++F+DE+D++G KR
Sbjct: 333 GEAGVPFITVNGSEFLEMFVGVGPARVRDMFALARKNAPCILFVDEIDAIGRKRGRGHFG 392
Query: 1315 PYSRQ--TINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
S Q T+NQLL EMDGF V+++ TN P+ LD AL+RPGRFD Q+ + PD+KG
Sbjct: 393 GQSEQENTLNQLLVEMDGFNSTTNVVVLAGTNRPDVLDPALMRPGRFDRQIYIGPPDIKG 452
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARG----TVGFSGAELENLVNQAALKAAVDGKEMVTM 1656
R+ I + +L +K D+S+ + +AR T GF+GA++ N+ N+AAL AA V
Sbjct: 453 RSSIFRVHLRPLKLDESLSKDALARKLAALTPGFTGADISNVCNEAALIAARHLNPSVGE 512
Query: 1657 KELEFFKDKVLMGPERK 1707
K E ++V+ G E+K
Sbjct: 513 KHFEQAIERVIGGLEKK 529
>ref|XP_612083.4| PREDICTED: AFG3(ATPase family gene 3)-like 1-like [Bos taurus].
Length = 845
Score = 244 bits (622), Expect = 2e-64
Identities = 135/317 (42%), Positives = 195/317 (61%), Gaps = 11/317 (3%)
Frame = +1
Query: 790 AQALTQKTNDSLRRTRLIVFILLVVGIYGLLKNPF---LSVRFRTTTGLDSAVDPVQMKN 960
A T +++ + R+ + +L+ + +Y + + P R G+ + + +
Sbjct: 213 AVVYTTESDGTFLRSLVPTLLLIGIFLYAMRRGPMGAGRGGRGGRLFGIGETIAKIIKDD 272
Query: 961 --VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVA 1134
V F V G EEAK E+ E V FLKNP+++ LG K+PKG LL GPPGTGKTLLA+A A
Sbjct: 273 IGVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGALLTGPPGTGKTLLAKATA 332
Query: 1135 GEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMH 1314
GEA VPF +GSEF EMFVGVG +R+R++F A+ NAPC++F+DE+D++G KR
Sbjct: 333 GEAGVPFITVNGSEFLEMFVGVGPARVRDMFALARKNAPCILFVDEIDAIGRKRGRGHFG 392
Query: 1315 PYSRQ--TINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
S Q T+NQLL EMDGF V+++ TN P+ LD AL+RPGRFD Q+ + PD+KG
Sbjct: 393 GQSEQENTLNQLLVEMDGFNSTTNVVVLAGTNRPDVLDPALMRPGRFDRQIYIGPPDIKG 452
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARG----TVGFSGAELENLVNQAALKAAVDGKEMVTM 1656
R+ I + +L +K D+S+ + +AR T GF+GA++ N+ N+AAL AA V
Sbjct: 453 RSSIFRVHLRPLKLDESLSKDALARKLAALTPGFTGADISNVCNEAALIAARHLNPSVGE 512
Query: 1657 KELEFFKDKVLMGPERK 1707
K E ++V+ G E+K
Sbjct: 513 KHFEQAIERVIGGLEKK 529
>ref|NP_001095492.1| paraplegin [Bos taurus].
Length = 779
Score = 229 bits (585), Expect = 4e-60
Identities = 121/262 (46%), Positives = 175/262 (66%), Gaps = 5/262 (1%)
Frame = +1
Query: 937 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTL 1116
VD K V+F+ V G+ EAK E++E V++LK+P++F LG K+PKG LL+GPPG GKTL
Sbjct: 298 VDGKMGKGVSFKDVAGMHEAKLEVKEFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTL 357
Query: 1117 LARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKR 1296
LA+AVA EA VPF +G EF E+ G+GA+R+R+LF+EA+A APC+++IDE+D+VG KR
Sbjct: 358 LAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKR 417
Query: 1297 ---IESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTV 1467
+ + QT+NQLL EMDG + VI++ ATN + LDNAL+RPGR D V +
Sbjct: 418 STAVSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAATNRADILDNALLRPGRLDRHVFI 477
Query: 1468 PRPDVKGRTEILKWYLNKIKFDQ--SVDPEIIARGTVGFSGAELENLVNQAALKAAVDGK 1641
P ++ R EI + +L +K + S + +A T GFSGA++ N+ N+AAL AA +G
Sbjct: 478 DLPTLQERKEIFEQHLKSLKLTRASSFYSQRLAELTPGFSGADIANICNEAALHAAREGH 537
Query: 1642 EMVTMKELEFFKDKVLMGPERK 1707
V L++ ++V+ G +K
Sbjct: 538 TAVHTSNLDYAVERVVAGTAKK 559
>ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus].
Length = 406
Score = 182 bits (461), Expect = 1e-45
Identities = 105/280 (37%), Positives = 168/280 (60%), Gaps = 16/280 (5%)
Frame = +1
Query: 925 LDSAVDPV-------QMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGI 1080
L + VDP+ ++ + T+E + G+++ +E++EV+E +K+P+ F LG PKG+
Sbjct: 127 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGV 186
Query: 1081 LLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVI 1260
LL GPPGTGKTLLARAVA D F SGSE + F+G GA +R LF A+ +AP +I
Sbjct: 187 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 246
Query: 1261 FIDELDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALI 1434
F+DE+DS+G R+E S ++T+ +LL ++DGF+ + + +I ATN + LD+AL+
Sbjct: 247 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 306
Query: 1435 RPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQA 1614
RPGR D ++ P P+ + R +ILK + K+ + ++ IA G SGAE++ + +A
Sbjct: 307 RPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366
Query: 1615 ALKAAVDGKEMVTMKELEFFKDKVLMGPE------RKVWK 1716
+ A + + VT ++ E KV+ +K+WK
Sbjct: 367 GMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
>ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus].
Length = 806
Score = 179 bits (453), Expect = 9e-45
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Frame = +1
Query: 946 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLA 1122
V++ VT+E + G+E+ K+ELQE+V++ +++P KF G KG+L GPPG GKTLLA
Sbjct: 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528
Query: 1123 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVG---GK 1293
+A+A E F G E M+ G + +R +F +A+ APCV+F DELDS+ G
Sbjct: 529 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 588
Query: 1294 RIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPR 1473
I R INQ+L EMDG + V IIGATN P+ +D A++RPGR D + +P
Sbjct: 589 NIGDGGGAADR-VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1474 PDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVT 1653
PD K R ILK L K + VD E +A+ T GFSGA+L + +A A + E
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707
Query: 1654 MKELE 1668
+E E
Sbjct: 708 RRERE 712
Score = 173 bits (439), Expect = 4e-43
Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 1/238 (0%)
Frame = +1
Query: 952 MKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARA 1128
+ V ++ + G + +++E+VE L++P F +G K P+GILL GPPGTGKTL+ARA
Sbjct: 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257
Query: 1129 VAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESP 1308
VA E F+ +G E G S +R F EA+ NAP +IFIDELD++ KR E
Sbjct: 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKT 316
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
R+ ++QLL MDG K VI++ ATN P ++D AL R GRFD +V + PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R EIL+ + +K VD E +A T G GA+L L ++AAL+A +++ +++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>ref|NP_001015639.1| 26S protease regulatory subunit 7 [Bos taurus].
Length = 433
Score = 172 bits (437), Expect = 7e-43
Identities = 97/261 (37%), Positives = 157/261 (60%), Gaps = 6/261 (2%)
Frame = +1
Query: 925 LDSAVDPVQMK---NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVG 1092
+D V +Q++ +VT+ V G +E ++L+EVVE L +P++F LG + PKG+LL G
Sbjct: 157 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 216
Query: 1093 PPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDE 1272
PPGTGKTL ARAVA D F GSE + +VG GA +R LF A+ C+IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 1273 LDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGR 1446
+D++GG R + + ++T+ +L+ ++DGF P + ++ ATN P+ LD AL+RPGR
Sbjct: 277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 1447 FDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKA 1626
D ++ PD++GRT I K + + ++ + E++AR +GAE+ ++ +A + A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 1627 AVDGKEMVTMKELEFFKDKVL 1689
+++ T K+ +KV+
Sbjct: 397 IRARRKIATEKDFLEAVNKVI 417
>ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus].
Length = 389
Score = 166 bits (420), Expect = 6e-41
Identities = 93/238 (39%), Positives = 142/238 (59%), Gaps = 3/238 (1%)
Frame = +1
Query: 958 NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVA 1134
NV++ + G+ E +EL+EV+E L NP+ F +G PKG LL GPPGTGKTLLARAVA
Sbjct: 129 NVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 188
Query: 1135 GEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIE--SP 1308
+ D F S + ++G A IR +F A+ + PC+IF+DE+D++GG+R +
Sbjct: 189 SQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTS 248
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
++T+ +LL +MDGF V +I ATN P+ LD AL+RPGR D ++ + P+ +
Sbjct: 249 ADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQA 308
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R +ILK + I +D E I + + GF+GA+L N+ +A + A + V ++
Sbjct: 309 RLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQED 366
>ref|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taurus].
Length = 440
Score = 160 bits (405), Expect = 3e-39
Identities = 97/271 (35%), Positives = 155/271 (57%), Gaps = 6/271 (2%)
Frame = +1
Query: 868 IYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNP--- 1038
+ G+ K+ +L + T DS V +++ E + +++QE+VE + P
Sbjct: 151 LVGVNKDSYLILE-TLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNH 209
Query: 1039 -QKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRI 1215
+KF LG + PKG+L+ GPPGTGKTLLARA A + F +G + +MF+G GA +
Sbjct: 210 KEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLV 269
Query: 1216 RNLFREAKANAPCVIFIDELDSVGGKRIESPM--HPYSRQTINQLLAEMDGFKPNEGVII 1389
R+ F AK AP +IFIDELD++G KR +S ++T+ +LL ++DGF+PN V +
Sbjct: 270 RDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKV 329
Query: 1390 IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGT 1569
I ATN + LD AL+R GR D ++ P P+ + R I++ + K+ V+ E +AR T
Sbjct: 330 IAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCT 389
Query: 1570 VGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
F+GA+ + + +A + A G +T ++
Sbjct: 390 DDFNGAQCKAVCVEAGMIALRRGATELTHED 420
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,505,458
Number of extensions: 1421597
Number of successful extensions: 4887
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 4816
Number of HSP's successfully gapped: 56
Length of query: 585
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 477
Effective length of database: 14,107,870
Effective search space: 6729453990
Effective search space used: 6729453990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013767
(1756 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130808.1| PREDICTED: ATP-dependent zinc metalloproteas... 1018 0.0
Alignment gi|XP_003355759.1| PREDICTED: hypothetical protein LOC100627654... 186 3e-47
Alignment gi|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa]. 182 7e-46
Alignment gi|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus ... 177 1e-44
Alignment gi|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7... 172 4e-43
Alignment gi|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7... 172 4e-43
Alignment gi|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 1... 167 2e-41
Alignment gi|NP_001171382.1| spermatogenesis-associated protein 5-like pr... 164 2e-40
Alignment gi|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6... 160 2e-39
Alignment gi|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4... 159 5e-39
>ref|XP_003130808.1| PREDICTED: ATP-dependent zinc metalloprotease YME1L1-like [Sus
scrofa].
Length = 739
Score = 1018 bits (2631), Expect(2) = 0.0
Identities = 514/523 (98%), Positives = 519/523 (99%)
Frame = +1
Query: 160 QVTVPLSHLINAFHSPKNTSISVSASFSQNQHRDVVPEHEAPSSEPILNLRDLGLSELKI 339
QVTVPLSHLINAFHSPKNTSISVSASFSQNQHRDVVPEHEAPSSEPILNLRDLGLSELKI
Sbjct: 35 QVTVPLSHLINAFHSPKNTSISVSASFSQNQHRDVVPEHEAPSSEPILNLRDLGLSELKI 94
Query: 340 GQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYGSLDIFSTLRSSCLYRQHSRT 519
GQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYGSLDIFSTLRSSCLYRQHSRT
Sbjct: 95 GQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYGSLDIFSTLRSSCLYRQHSRT 154
Query: 520 LKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKGFLLRDRGSDI 699
LKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKGFLLRDRGSDI
Sbjct: 155 LKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKGFLLRDRGSDI 214
Query: 700 ESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVFILLVVGIYGL 879
ESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVFILLVVGIYGL
Sbjct: 215 ESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVFILLVVGIYGL 274
Query: 880 LKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLG 1059
LKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLG
Sbjct: 275 LKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLG 334
Query: 1060 GKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAK 1239
GKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAK
Sbjct: 335 GKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAK 394
Query: 1240 ANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEAL 1419
ANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEAL
Sbjct: 395 ANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEAL 454
Query: 1420 DNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELEN 1599
DNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELEN
Sbjct: 455 DNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELEN 514
Query: 1600 LVNQAALKAAVDGKEMVTMKELEFFKDKVLMGPERKVWKLNTK 1728
LVNQAALKAAVDGKEMVTMKELEF KDK+LMGPER+ +++ K
Sbjct: 515 LVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNK 557
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 1724 QNKTITAYHES 1756
+NKTITAYHES
Sbjct: 557 KNKTITAYHES 567
>ref|XP_003355759.1| PREDICTED: hypothetical protein LOC100627654 [Sus scrofa].
Length = 935
Score = 186 bits (473), Expect = 3e-47
Identities = 96/178 (53%), Positives = 130/178 (73%), Gaps = 4/178 (2%)
Frame = +1
Query: 937 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTL 1116
VD K V+F+ V G+ EAK E++E V++LK+P++F LG K+PKG LL+GPPG GKTL
Sbjct: 57 VDGKMGKGVSFKDVAGMHEAKLEVKEFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTL 116
Query: 1117 LARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKR 1296
LA+AVA EA VPF +GSEF E+ G+GA+R+R+LFREA+A APC+++IDE+D+VG KR
Sbjct: 117 LAKAVATEAQVPFLAMAGSEFVEVIGGLGAARVRSLFREARARAPCIVYIDEIDAVGKKR 176
Query: 1297 IESPMHPYS----RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQ 1458
S M +S QT+NQLL EMDG + VI++ +TN + LD AL+RPGR D +
Sbjct: 177 -ASTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDAALLRPGRLDRE 233
>ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].
Length = 406
Score = 182 bits (461), Expect = 7e-46
Identities = 105/280 (37%), Positives = 168/280 (60%), Gaps = 16/280 (5%)
Frame = +1
Query: 925 LDSAVDPV-------QMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGI 1080
L + VDP+ ++ + T+E + G+++ +E++EV+E +K+P+ F LG PKG+
Sbjct: 127 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGV 186
Query: 1081 LLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVI 1260
LL GPPGTGKTLLARAVA D F SGSE + F+G GA +R LF A+ +AP +I
Sbjct: 187 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 246
Query: 1261 FIDELDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALI 1434
F+DE+DS+G R+E S ++T+ +LL ++DGF+ + + +I ATN + LD+AL+
Sbjct: 247 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 306
Query: 1435 RPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQA 1614
RPGR D ++ P P+ + R +ILK + K+ + ++ IA G SGAE++ + +A
Sbjct: 307 RPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366
Query: 1615 ALKAAVDGKEMVTMKELEFFKDKVLMGPE------RKVWK 1716
+ A + + VT ++ E KV+ +K+WK
Sbjct: 367 GMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
>ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa].
Length = 806
Score = 177 bits (450), Expect = 1e-44
Identities = 101/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Frame = +1
Query: 946 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLA 1122
V++ VT+E + G+E+ K+ELQ++V++ +++P KF G KG+L GPPG GKTLLA
Sbjct: 469 VEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528
Query: 1123 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVG---GK 1293
+A+A E F G E M+ G + +R +F +A+ APCV+F DELDS+ G
Sbjct: 529 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 588
Query: 1294 RIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPR 1473
I R INQ+L EMDG + V IIGATN P+ +D A++RPGR D + +P
Sbjct: 589 NIGDGGGAADR-VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1474 PDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVT 1653
PD K R ILK L K + VD E +A+ T GFSGA+L + +A A + E
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707
Query: 1654 MKELE 1668
+E E
Sbjct: 708 RRERE 712
Score = 173 bits (439), Expect = 2e-43
Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 1/238 (0%)
Frame = +1
Query: 952 MKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARA 1128
+ V ++ + G + +++E+VE L++P F +G K P+GILL GPPGTGKTL+ARA
Sbjct: 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257
Query: 1129 VAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESP 1308
VA E F+ +G E G S +R F EA+ NAP +IFIDELD++ KR E
Sbjct: 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKT 316
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
R+ ++QLL MDG K VI++ ATN P ++D AL R GRFD +V + PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R EIL+ + +K VD E +A T G GA+L L ++AAL+A +++ +++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>ref|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 480
Score = 172 bits (437), Expect = 4e-43
Identities = 97/261 (37%), Positives = 157/261 (60%), Gaps = 6/261 (2%)
Frame = +1
Query: 925 LDSAVDPVQMK---NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVG 1092
+D V +Q++ +VT+ V G +E ++L+EVVE L +P++F LG + PKG+LL G
Sbjct: 204 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 263
Query: 1093 PPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDE 1272
PPGTGKTL ARAVA D F GSE + +VG GA +R LF A+ C+IF DE
Sbjct: 264 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 323
Query: 1273 LDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGR 1446
+D++GG R + + ++T+ +L+ ++DGF P + ++ ATN P+ LD AL+RPGR
Sbjct: 324 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 383
Query: 1447 FDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKA 1626
D ++ PD++GRT I K + + ++ + E++AR +GAE+ ++ +A + A
Sbjct: 384 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 443
Query: 1627 AVDGKEMVTMKELEFFKDKVL 1689
+++ T K+ +KV+
Sbjct: 444 IRARRKIATEKDFLEAVNKVI 464
>ref|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 433
Score = 172 bits (437), Expect = 4e-43
Identities = 97/261 (37%), Positives = 157/261 (60%), Gaps = 6/261 (2%)
Frame = +1
Query: 925 LDSAVDPVQMK---NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVG 1092
+D V +Q++ +VT+ V G +E ++L+EVVE L +P++F LG + PKG+LL G
Sbjct: 157 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 216
Query: 1093 PPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDE 1272
PPGTGKTL ARAVA D F GSE + +VG GA +R LF A+ C+IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 1273 LDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGR 1446
+D++GG R + + ++T+ +L+ ++DGF P + ++ ATN P+ LD AL+RPGR
Sbjct: 277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 1447 FDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKA 1626
D ++ PD++GRT I K + + ++ + E++AR +GAE+ ++ +A + A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 1627 AVDGKEMVTMKELEFFKDKVL 1689
+++ T K+ +KV+
Sbjct: 397 IRARRKIATEKDFLEAVNKVI 417
>ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa].
Length = 403
Score = 167 bits (422), Expect = 2e-41
Identities = 93/238 (39%), Positives = 142/238 (59%), Gaps = 3/238 (1%)
Frame = +1
Query: 958 NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVA 1134
NV++ + G+ E +EL+EV+E L NP+ F +G PKG LL GPPGTGKTLLARAVA
Sbjct: 143 NVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 202
Query: 1135 GEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIE--SP 1308
+ D F S + ++G A IR +F A+ + PC+IF+DE+D++GG+R +
Sbjct: 203 SQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTS 262
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
++T+ +LL +MDGF V +I ATN P+ LD AL+RPGR D ++ + P+ +
Sbjct: 263 ADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQA 322
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R +ILK + I +D E I + + GF+GA+L N+ +A + A + V ++
Sbjct: 323 RLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQED 380
>ref|NP_001171382.1| spermatogenesis-associated protein 5-like protein 1 [Sus scrofa].
Length = 755
Score = 164 bits (414), Expect = 2e-40
Identities = 104/286 (36%), Positives = 156/286 (54%), Gaps = 22/286 (7%)
Frame = +1
Query: 907 FRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGIL 1083
FR+ GL + +K +T+E + G+E+AK++L++ +E+ LK P++F +G PKG+L
Sbjct: 451 FRSVIGL------MDVKPITWEQIGGLEDAKRKLKQSIEWPLKFPREFVRMGLTQPKGVL 504
Query: 1084 LVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIF 1263
L GPPG KT L RA+A F SG++ FVG + +F++A+AN P V+F
Sbjct: 505 LYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKILSQVFQQARANTPAVVF 564
Query: 1264 IDELDSV-GGKRIESPMHPYSRQTINQLLAEMDG-----------------FKP--NEGV 1383
+DE+DS+ G + I + ++ LL E+DG F+ N V
Sbjct: 565 LDEIDSILGSRSISKTGCNVQERVLSVLLNELDGVGLKTIERRGSKSDQHEFQEVFNSNV 624
Query: 1384 IIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIAR 1563
+I+ ATN P+ LD+AL+RPGR D + +P PD KGR IL+ + V E +A
Sbjct: 625 MIVAATNRPDVLDDALLRPGRLDKIIYIPPPDEKGRLSILRVCTKNMPVGPDVSLENLAA 684
Query: 1564 GTVGFSGAELENLVNQAALKAAVD-GKEMVTMKELEFFKDKVLMGP 1698
T FSGA+L NL +AAL A + G E T+K+ F K + P
Sbjct: 685 ETCLFSGADLGNLCKEAALLALQENGLEATTVKQEHFLKSLKTVKP 730
Score = 138 bits (347), Expect = 1e-32
Identities = 89/243 (36%), Positives = 132/243 (54%), Gaps = 4/243 (1%)
Frame = +1
Query: 910 RTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILL 1086
RT GL S V P + + + G+ EA L+E++ L P+ F LG +P+G+LL
Sbjct: 181 RTHIGL-SGVPPSESEPPPEVPLGGLAEAADSLRELLRLPLLYPRSFASLGLAVPRGVLL 239
Query: 1087 VGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANA---PCV 1257
GPPG GKT L RAVA EA S G +R +F+ A+ A P +
Sbjct: 240 AGPPGVGKTQLVRAVAREAGAELLAVSAPALQGARPGETEENVRRVFQRAQELAGRRPTL 299
Query: 1258 IFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIR 1437
+F+DE+D++ +R P SR + Q+L +DG + V+++G+TN P+ALD AL R
Sbjct: 300 LFLDEVDALCPRRGGPHQAPESR-VVAQVLTLLDGISGDREVVVVGSTNRPDALDPALRR 358
Query: 1438 PGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAA 1617
PGRFD +V + P + R IL+ +K+ VD ++A TVG+ GA+L L +AA
Sbjct: 359 PGRFDREVVIGTPTLGQRKAILQVITSKMPISSQVDLSLLAEMTVGYVGADLTALCREAA 418
Query: 1618 LKA 1626
+ A
Sbjct: 419 MHA 421
>ref|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6A [Sus scrofa].
Length = 439
Score = 160 bits (405), Expect = 2e-39
Identities = 97/271 (35%), Positives = 155/271 (57%), Gaps = 6/271 (2%)
Frame = +1
Query: 868 IYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNP--- 1038
+ G+ K+ +L + T DS V +++ E + +++QE+VE + P
Sbjct: 150 LVGVNKDSYLILE-TLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNH 208
Query: 1039 -QKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRI 1215
+KF LG + PKG+L+ GPPGTGKTLLARA A + F +G + +MF+G GA +
Sbjct: 209 KEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLV 268
Query: 1216 RNLFREAKANAPCVIFIDELDSVGGKRIESPM--HPYSRQTINQLLAEMDGFKPNEGVII 1389
R+ F AK AP +IFIDELD++G KR +S ++T+ +LL ++DGF+PN V +
Sbjct: 269 RDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKV 328
Query: 1390 IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGT 1569
I ATN + LD AL+R GR D ++ P P+ + R I++ + K+ V+ E +AR T
Sbjct: 329 IAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCT 388
Query: 1570 VGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
F+GA+ + + +A + A G +T ++
Sbjct: 389 DDFNGAQCKAVCVEAGMIALRRGATELTHED 419
>ref|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Sus scrofa].
Length = 367
Score = 159 bits (402), Expect = 5e-39
Identities = 90/245 (36%), Positives = 144/245 (58%), Gaps = 3/245 (1%)
Frame = +1
Query: 964 TFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 1140
T+ + G++ QE++E VE L +P+ + +G K PKG++L GPPGTGKTLLA+AVA +
Sbjct: 110 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 169
Query: 1141 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM--H 1314
F GSE + ++G G +R LFR A+ +AP ++FIDE+D++G KR +S
Sbjct: 170 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 229
Query: 1315 PYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 1494
++T+ +LL ++DGF V +I ATN E LD ALIRPGR D ++ P PD K +
Sbjct: 230 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 289
Query: 1495 EILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFF 1674
I + + +++ V + + SGA+++ + +A L A + + VT ++ +
Sbjct: 290 RIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 349
Query: 1675 KDKVL 1689
K+ VL
Sbjct: 350 KENVL 354
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,498,987
Number of extensions: 904084
Number of successful extensions: 3076
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 3023
Number of HSP's successfully gapped: 39
Length of query: 585
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 481
Effective length of database: 8,754,644
Effective search space: 4210983764
Effective search space used: 4210983764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013767
(1756 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038799.1| ATP-dependent zinc metalloprotease YME1L1 [Mus ... 968 0.0
Alignment gi|NP_081406.1| AFG3-like protein 2 [Mus musculus]. 249 5e-66
Alignment gi|NP_473411.2| AFG3-like protein 1 [Mus musculus]. 246 4e-65
Alignment gi|NP_694816.3| paraplegin [Mus musculus]. 229 7e-60
Alignment gi|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus]. 182 9e-46
Alignment gi|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus ... 179 8e-45
Alignment gi|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus]. 172 6e-43
Alignment gi|NP_080235.2| 26S protease regulatory subunit 10B [Mus muscul... 167 3e-41
Alignment gi|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculu... 160 3e-39
Alignment gi|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus]. 159 7e-39
>ref|NP_038799.1| ATP-dependent zinc metalloprotease YME1L1 [Mus musculus].
Length = 715
Score = 968 bits (2503), Expect(2) = 0.0
Identities = 485/533 (90%), Positives = 511/533 (95%)
Frame = +1
Query: 130 MFSLSSTVQPQVTVPLSHLINAFHSPKNTSISVSASFSQNQHRDVVPEHEAPSSEPILNL 309
MFSLSSTVQPQVT+PLSHLINAFHSPKN S+SV+ SQ QHRD VPEHEAPSSEP+LNL
Sbjct: 1 MFSLSSTVQPQVTIPLSHLINAFHSPKNISVSVNTPVSQKQHRDTVPEHEAPSSEPVLNL 60
Query: 310 RDLGLSELKIGQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYGSLDIFSTLRS 489
RDLGLSELKIGQID++V++LLPGF K K VSS WHTSH+SAQSFFENKYG LD+FSTLRS
Sbjct: 61 RDLGLSELKIGQIDKMVENLLPGFYKDKRVSSCWHTSHISAQSFFENKYGHLDMFSTLRS 120
Query: 490 SCLYRQHSRTLKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKG 669
S LYRQH +TL+ ICSDLQY+PVF+QSRGFKTLKSRTRRLQSTSERL E Q+ APSFVKG
Sbjct: 121 SSLYRQHPKTLRSICSDLQYFPVFIQSRGFKTLKSRTRRLQSTSERLVEAQNIAPSFVKG 180
Query: 670 FLLRDRGSDIESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVF 849
FLLRDRG+D+ESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLI+F
Sbjct: 181 FLLRDRGTDLESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLILF 240
Query: 850 ILLVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFL 1029
+LL+ GIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFL
Sbjct: 241 VLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFL 300
Query: 1030 KNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGAS 1209
KNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGAS
Sbjct: 301 KNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGAS 360
Query: 1210 RIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVII 1389
RIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVII
Sbjct: 361 RIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVII 420
Query: 1390 IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGT 1569
IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFD+SVDPEIIARGT
Sbjct: 421 IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGT 480
Query: 1570 VGFSGAELENLVNQAALKAAVDGKEMVTMKELEFFKDKVLMGPERKVWKLNTK 1728
VGFSGAELENLVNQAALKAAVDGKEMVTMKELEF KDK+LMGPER+ +++ K
Sbjct: 481 VGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNK 533
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 1724 QNKTITAYHES 1756
+NKTITAYHES
Sbjct: 533 KNKTITAYHES 543
>ref|NP_081406.1| AFG3-like protein 2 [Mus musculus].
Length = 802
Score = 249 bits (636), Expect = 5e-66
Identities = 132/264 (50%), Positives = 177/264 (67%), Gaps = 6/264 (2%)
Frame = +1
Query: 958 NVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAG 1137
+V F+ V G EEAK E+ E V FLKNP+++ LG K+PKG +L GPPGTGKTLLA+A AG
Sbjct: 303 DVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAG 362
Query: 1138 EADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHP 1317
EA+VPF SGSEF EMFVGVG +R+R+LF A+ NAPC++FIDE+D+VG KR
Sbjct: 363 EANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGG 422
Query: 1318 YSRQ--TINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGR 1491
S Q T+NQLL EMDGF V+I+ TN P+ LD AL+RPGRFD Q+ + PD+KGR
Sbjct: 423 QSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGR 482
Query: 1492 TEILKWYLNKIKFDQSVDPEIIARG----TVGFSGAELENLVNQAALKAAVDGKEMVTMK 1659
I K +L +K D +++ + +AR T GFSGA++ N+ N+AAL AA + + K
Sbjct: 483 ASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINEK 542
Query: 1660 ELEFFKDKVLMGPERKVWKLNTKQ 1731
E ++V+ G E+K L ++
Sbjct: 543 HFEQAIERVIGGLEKKTQVLQPEE 566
>ref|NP_473411.2| AFG3-like protein 1 [Mus musculus].
Length = 789
Score = 246 bits (628), Expect = 4e-65
Identities = 138/325 (42%), Positives = 201/325 (61%), Gaps = 11/325 (3%)
Frame = +1
Query: 790 AQALTQKTNDSLRRTRLIVFILLVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQ--MKN- 960
A T +++ S R+ + +L+ + +Y + + P + R GL S + +KN
Sbjct: 235 AVVYTTESDGSFLRSLVPTLVLVSILLYAMRRGPMGTGRGGRGGGLFSVGETTAKILKNN 294
Query: 961 --VTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVA 1134
V F V G EEAK E+ E V FLKNP+++ LG K+PKG +L GPPGTGKTLLA+A A
Sbjct: 295 IDVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATA 354
Query: 1135 GEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMH 1314
GEA+VPF +GSEF EMFVGVG +R+R++F A+ +APC++FIDE+D++G KR +
Sbjct: 355 GEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLG 414
Query: 1315 PYSRQ--TINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
S Q T+NQ+L EMDGF + V+++ TN P+ LD AL RPGRFD Q+ + PD+KG
Sbjct: 415 GQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKG 474
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARG----TVGFSGAELENLVNQAALKAAVDGKEMVTM 1656
R+ I K +L +K D S+ + ++R T GF+GA++ N+ N+AAL AA V
Sbjct: 475 RSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQE 534
Query: 1657 KELEFFKDKVLMGPERKVWKLNTKQ 1731
+ E ++V+ G E+K L +
Sbjct: 535 RHFEQAIERVIGGLEKKTQVLQPSE 559
>ref|NP_694816.3| paraplegin [Mus musculus].
Length = 781
Score = 229 bits (583), Expect = 7e-60
Identities = 127/277 (45%), Positives = 183/277 (66%), Gaps = 6/277 (2%)
Frame = +1
Query: 937 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTL 1116
VD K V+F+ V G+ EAK E++E V++LK+P++F LG K+PKG LL+GPPG GKTL
Sbjct: 298 VDGKTGKGVSFQDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTL 357
Query: 1117 LARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKR 1296
LA+AVA EA VPF +G EF E+ G+GA+R+R+LF+EA+A APC+++IDE+D+VG KR
Sbjct: 358 LAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKR 417
Query: 1297 IESPMHPYS----RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 1464
S M +S QT+NQLL EMDG + VI++ +TN + LDNAL+RPGR D V
Sbjct: 418 STS-MSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVF 476
Query: 1465 VPRPDVKGRTEILKWYLNKIKFDQ--SVDPEIIARGTVGFSGAELENLVNQAALKAAVDG 1638
+ P ++ R EI + +L +K Q S + +A T GFSGA++ N+ N+AAL AA +G
Sbjct: 477 IDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREG 536
Query: 1639 KEMVTMKELEFFKDKVLMGPERKVWKLNTKQNDHSVS 1749
V E+ ++V+ G +K K+ +K+ V+
Sbjct: 537 HTSVHTFNFEYAVERVIAGTAKKS-KILSKEEQRVVA 572
>ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].
Length = 406
Score = 182 bits (461), Expect = 9e-46
Identities = 105/280 (37%), Positives = 168/280 (60%), Gaps = 16/280 (5%)
Frame = +1
Query: 925 LDSAVDPV-------QMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGI 1080
L + VDP+ ++ + T+E + G+++ +E++EV+E +K+P+ F LG PKG+
Sbjct: 127 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGV 186
Query: 1081 LLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVI 1260
LL GPPGTGKTLLARAVA D F SGSE + F+G GA +R LF A+ +AP +I
Sbjct: 187 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 246
Query: 1261 FIDELDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALI 1434
F+DE+DS+G R+E S ++T+ +LL ++DGF+ + + +I ATN + LD+AL+
Sbjct: 247 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 306
Query: 1435 RPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQA 1614
RPGR D ++ P P+ + R +ILK + K+ + ++ IA G SGAE++ + +A
Sbjct: 307 RPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366
Query: 1615 ALKAAVDGKEMVTMKELEFFKDKVLMGPE------RKVWK 1716
+ A + + VT ++ E KV+ +K+WK
Sbjct: 367 GMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
>ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus].
Length = 806
Score = 179 bits (453), Expect = 8e-45
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Frame = +1
Query: 946 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLA 1122
V++ VT+E + G+E+ K+ELQE+V++ +++P KF G KG+L GPPG GKTLLA
Sbjct: 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528
Query: 1123 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVG---GK 1293
+A+A E F G E M+ G + +R +F +A+ APCV+F DELDS+ G
Sbjct: 529 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 588
Query: 1294 RIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPR 1473
I R INQ+L EMDG + V IIGATN P+ +D A++RPGR D + +P
Sbjct: 589 NIGDGGGAADR-VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1474 PDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVT 1653
PD K R ILK L K + VD E +A+ T GFSGA+L + +A A + E
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707
Query: 1654 MKELE 1668
+E E
Sbjct: 708 RRERE 712
Score = 173 bits (439), Expect = 3e-43
Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 1/238 (0%)
Frame = +1
Query: 952 MKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARA 1128
+ V ++ + G + +++E+VE L++P F +G K P+GILL GPPGTGKTL+ARA
Sbjct: 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257
Query: 1129 VAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESP 1308
VA E F+ +G E G S +R F EA+ NAP +IFIDELD++ KR E
Sbjct: 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKT 316
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
R+ ++QLL MDG K VI++ ATN P ++D AL R GRFD +V + PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R EIL+ + +K VD E +A T G GA+L L ++AAL+A +++ +++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>ref|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].
Length = 475
Score = 172 bits (437), Expect = 6e-43
Identities = 97/261 (37%), Positives = 157/261 (60%), Gaps = 6/261 (2%)
Frame = +1
Query: 925 LDSAVDPVQMK---NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVG 1092
+D V +Q++ +VT+ V G +E ++L+EVVE L +P++F LG + PKG+LL G
Sbjct: 199 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 258
Query: 1093 PPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDE 1272
PPGTGKTL ARAVA D F GSE + +VG GA +R LF A+ C+IF DE
Sbjct: 259 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 318
Query: 1273 LDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGR 1446
+D++GG R + + ++T+ +L+ ++DGF P + ++ ATN P+ LD AL+RPGR
Sbjct: 319 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 378
Query: 1447 FDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKA 1626
D ++ PD++GRT I K + + ++ + E++AR +GAE+ ++ +A + A
Sbjct: 379 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 438
Query: 1627 AVDGKEMVTMKELEFFKDKVL 1689
+++ T K+ +KV+
Sbjct: 439 IRARRKIATEKDFLEAVNKVI 459
>ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus].
Length = 389
Score = 167 bits (422), Expect = 3e-41
Identities = 93/238 (39%), Positives = 142/238 (59%), Gaps = 3/238 (1%)
Frame = +1
Query: 958 NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVA 1134
NV++ + G+ E +EL+EV+E L NP+ F +G PKG LL GPPGTGKTLLARAVA
Sbjct: 129 NVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 188
Query: 1135 GEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIE--SP 1308
+ D F S + ++G A IR +F A+ + PC+IF+DE+D++GG+R +
Sbjct: 189 SQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTS 248
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
++T+ +LL +MDGF V +I ATN P+ LD AL+RPGR D ++ + P+ +
Sbjct: 249 ADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQA 308
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R +ILK + I +D E I + + GF+GA+L N+ +A + A + V ++
Sbjct: 309 RLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQED 366
>ref|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculus].
Length = 442
Score = 160 bits (405), Expect = 3e-39
Identities = 97/271 (35%), Positives = 155/271 (57%), Gaps = 6/271 (2%)
Frame = +1
Query: 868 IYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNP--- 1038
+ G+ K+ +L + T DS V +++ E + +++QE+VE + P
Sbjct: 153 LVGVNKDSYLILE-TLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNH 211
Query: 1039 -QKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRI 1215
+KF LG + PKG+L+ GPPGTGKTLLARA A + F +G + +MF+G GA +
Sbjct: 212 KEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLV 271
Query: 1216 RNLFREAKANAPCVIFIDELDSVGGKRIESPM--HPYSRQTINQLLAEMDGFKPNEGVII 1389
R+ F AK AP +IFIDELD++G KR +S ++T+ +LL ++DGF+PN V +
Sbjct: 272 RDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKV 331
Query: 1390 IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGT 1569
I ATN + LD AL+R GR D ++ P P+ + R I++ + K+ V+ E +AR T
Sbjct: 332 IAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCT 391
Query: 1570 VGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
F+GA+ + + +A + A G +T ++
Sbjct: 392 DDFNGAQCKAVCVEAGMIALRRGATELTHED 422
>ref|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].
Length = 440
Score = 159 bits (402), Expect = 7e-39
Identities = 90/245 (36%), Positives = 144/245 (58%), Gaps = 3/245 (1%)
Frame = +1
Query: 964 TFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGE 1140
T+ + G++ QE++E VE L +P+ + +G K PKG++L GPPGTGKTLLA+AVA +
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 1141 ADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPM--H 1314
F GSE + ++G G +R LFR A+ +AP ++FIDE+D++G KR +S
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 1315 PYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRT 1494
++T+ +LL ++DGF V +I ATN E LD ALIRPGR D ++ P PD K +
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 1495 EILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFF 1674
I + + +++ V + + SGA+++ + +A L A + + VT ++ +
Sbjct: 363 RIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 422
Query: 1675 KDKVL 1689
K+ VL
Sbjct: 423 KENVL 427
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,610,006
Number of extensions: 1251306
Number of successful extensions: 4378
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 4308
Number of HSP's successfully gapped: 43
Length of query: 585
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 478
Effective length of database: 12,403,707
Effective search space: 5928971946
Effective search space used: 5928971946
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013767
(1756 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055078.1| ATP-dependent zinc metalloprotease YME1L1 isofo... 999 0.0
Alignment gi|NP_647473.1| ATP-dependent zinc metalloprotease YME1L1 isofo... 959 0.0
Alignment gi|NP_006787.2| AFG3-like protein 2 [Homo sapiens]. 250 3e-66
Alignment gi|NP_003110.1| paraplegin isoform 1 [Homo sapiens]. 228 2e-59
Alignment gi|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 ... 182 1e-45
Alignment gi|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Ho... 182 1e-45
Alignment gi|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo... 179 9e-45
Alignment gi|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Ho... 172 7e-43
Alignment gi|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapie... 167 4e-41
Alignment gi|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapien... 160 3e-39
>ref|NP_055078.1| ATP-dependent zinc metalloprotease YME1L1 isoform 3 [Homo sapiens].
Length = 716
Score = 999 bits (2584), Expect(2) = 0.0
Identities = 501/534 (93%), Positives = 521/534 (97%), Gaps = 1/534 (0%)
Frame = +1
Query: 130 MFSLSSTVQPQVTVPLSHLINAFHSPKNTSISVSA-SFSQNQHRDVVPEHEAPSSEPILN 306
MFSLSSTVQPQVTVPLSHLINAFH+PKNTS+S+S S SQNQHRDVVPEHEAPSSEP LN
Sbjct: 1 MFSLSSTVQPQVTVPLSHLINAFHTPKNTSVSLSGVSVSQNQHRDVVPEHEAPSSEPSLN 60
Query: 307 LRDLGLSELKIGQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYGSLDIFSTLR 486
LRDLGLSELKIGQIDQLV++LLPGFCKGKN+SSHWHTSHVSAQSFFENKYG+LDIFSTLR
Sbjct: 61 LRDLGLSELKIGQIDQLVENLLPGFCKGKNISSHWHTSHVSAQSFFENKYGNLDIFSTLR 120
Query: 487 SSCLYRQHSRTLKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVK 666
SSCLYR HSR L+ ICSDLQYWPVF+QSRGFKTLKSRTRRLQSTSERLAETQ+ APSFVK
Sbjct: 121 SSCLYRHHSRALQSICSDLQYWPVFIQSRGFKTLKSRTRRLQSTSERLAETQNIAPSFVK 180
Query: 667 GFLLRDRGSDIESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIV 846
GFLLRDRGSD+ESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLI+
Sbjct: 181 GFLLRDRGSDVESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIL 240
Query: 847 FILLVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEF 1026
F+LL+ GIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEF
Sbjct: 241 FVLLLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEF 300
Query: 1027 LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGA 1206
LKNPQKFT+LGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGA
Sbjct: 301 LKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGA 360
Query: 1207 SRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVI 1386
SRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVI
Sbjct: 361 SRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVI 420
Query: 1387 IIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARG 1566
IIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARG
Sbjct: 421 IIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARG 480
Query: 1567 TVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFFKDKVLMGPERKVWKLNTK 1728
TVGFSGAELENLVNQAALKAAVDGKEMVTMKELEF KDK+LMGPER+ +++ K
Sbjct: 481 TVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNK 534
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 1724 QNKTITAYHES 1756
+NKTITAYHES
Sbjct: 534 KNKTITAYHES 544
>ref|NP_647473.1| ATP-dependent zinc metalloprotease YME1L1 isoform 1 [Homo sapiens].
Length = 773
Score = 959 bits (2480), Expect(2) = 0.0
Identities = 496/591 (83%), Positives = 519/591 (87%), Gaps = 58/591 (9%)
Frame = +1
Query: 130 MFSLSSTVQPQVTVPLSHLINAFHSPKNTSISVS-ASFSQNQHRDVVPEHEAPSSEPI-- 300
MFSLSSTVQPQVTVPLSHLINAFH+PKNTS+S+S S SQNQHRDVVPEHEAPSSE +
Sbjct: 1 MFSLSSTVQPQVTVPLSHLINAFHTPKNTSVSLSGVSVSQNQHRDVVPEHEAPSSECMFS 60
Query: 301 -----LNLRDLG------------------------------------------------ 321
LN+ +G
Sbjct: 61 DFLTKLNIVSIGKGKIFEGYRSMFMEPAKRMKKSLDTTDNWHIRPEPFSLSIPPSLNLRD 120
Query: 322 --LSELKIGQIDQLVDSLLPGFCKGKNVSSHWHTSHVSAQSFFENKYGSLDIFSTLRSSC 495
LSELKIGQIDQLV++LLPGFCKGKN+SSHWHTSHVSAQSFFENKYG+LDIFSTLRSSC
Sbjct: 121 LGLSELKIGQIDQLVENLLPGFCKGKNISSHWHTSHVSAQSFFENKYGNLDIFSTLRSSC 180
Query: 496 LYRQHSRTLKRICSDLQYWPVFVQSRGFKTLKSRTRRLQSTSERLAETQHTAPSFVKGFL 675
LYR HSR L+ ICSDLQYWPVF+QSRGFKTLKSRTRRLQSTSERLAETQ+ APSFVKGFL
Sbjct: 181 LYRHHSRALQSICSDLQYWPVFIQSRGFKTLKSRTRRLQSTSERLAETQNIAPSFVKGFL 240
Query: 676 LRDRGSDIESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLIVFIL 855
LRDRGSD+ESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLI+F+L
Sbjct: 241 LRDRGSDVESLDKLMKTKNIPEAHQDAFKTGFAEGFLKAQALTQKTNDSLRRTRLILFVL 300
Query: 856 LVVGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKN 1035
L+ GIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKN
Sbjct: 301 LLFGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKN 360
Query: 1036 PQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRI 1215
PQKFT+LGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRI
Sbjct: 361 PQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRI 420
Query: 1216 RNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIG 1395
RNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIG
Sbjct: 421 RNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIG 480
Query: 1396 ATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVG 1575
ATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVG
Sbjct: 481 ATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVG 540
Query: 1576 FSGAELENLVNQAALKAAVDGKEMVTMKELEFFKDKVLMGPERKVWKLNTK 1728
FSGAELENLVNQAALKAAVDGKEMVTMKELEF KDK+LMGPER+ +++ K
Sbjct: 541 FSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNK 591
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 1724 QNKTITAYHES 1756
+NKTITAYHES
Sbjct: 591 KNKTITAYHES 601
>ref|NP_006787.2| AFG3-like protein 2 [Homo sapiens].
Length = 797
Score = 250 bits (638), Expect = 3e-66
Identities = 132/264 (50%), Positives = 177/264 (67%), Gaps = 6/264 (2%)
Frame = +1
Query: 958 NVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAG 1137
+V F+ V G EEAK E+ E V FLKNP+++ LG K+PKG +L GPPGTGKTLLA+A AG
Sbjct: 304 DVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAG 363
Query: 1138 EADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHP 1317
EA+VPF SGSEF EMFVGVG +R+R+LF A+ NAPC++FIDE+D+VG KR
Sbjct: 364 EANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGG 423
Query: 1318 YSRQ--TINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGR 1491
S Q T+NQLL EMDGF V+I+ TN P+ LD AL+RPGRFD Q+ + PD+KGR
Sbjct: 424 QSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGR 483
Query: 1492 TEILKWYLNKIKFDQSVDPEIIARG----TVGFSGAELENLVNQAALKAAVDGKEMVTMK 1659
I K +L +K D +++ + +AR T GFSGA++ N+ N+AAL AA + + K
Sbjct: 484 ASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQK 543
Query: 1660 ELEFFKDKVLMGPERKVWKLNTKQ 1731
E ++V+ G E+K L ++
Sbjct: 544 HFEQAIERVIGGLEKKTQVLQPEE 567
>ref|NP_003110.1| paraplegin isoform 1 [Homo sapiens].
Length = 795
Score = 228 bits (580), Expect = 2e-59
Identities = 123/263 (46%), Positives = 175/263 (66%), Gaps = 6/263 (2%)
Frame = +1
Query: 937 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTL 1116
VD K V+F+ V G+ EAK E++E V++LK+P++F LG K+PKG LL+GPPG GKTL
Sbjct: 298 VDGKMGKGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTL 357
Query: 1117 LARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKR 1296
LA+AVA EA VPF +G EF E+ G+GA+R+R+LF+EA+A APC+++IDE+D+VG KR
Sbjct: 358 LAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKR 417
Query: 1297 IESPMHPYS----RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVT 1464
+ M +S QT+NQLL EMDG + VI++ +TN + LD AL+RPGR D V
Sbjct: 418 -STTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVF 476
Query: 1465 VPRPDVKGRTEILKWYLNKIKFDQSVD--PEIIARGTVGFSGAELENLVNQAALKAAVDG 1638
+ P ++ R EI + +L +K QS + +A T GFSGA++ N+ N+AAL AA +G
Sbjct: 477 IDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG 536
Query: 1639 KEMVTMKELEFFKDKVLMGPERK 1707
V E+ ++VL G +K
Sbjct: 537 HTSVHTLNFEYAVERVLAGTAKK 559
>ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens].
Length = 398
Score = 182 bits (461), Expect = 1e-45
Identities = 105/280 (37%), Positives = 168/280 (60%), Gaps = 16/280 (5%)
Frame = +1
Query: 925 LDSAVDPV-------QMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGI 1080
L + VDP+ ++ + T+E + G+++ +E++EV+E +K+P+ F LG PKG+
Sbjct: 119 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGV 178
Query: 1081 LLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVI 1260
LL GPPGTGKTLLARAVA D F SGSE + F+G GA +R LF A+ +AP +I
Sbjct: 179 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 238
Query: 1261 FIDELDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALI 1434
F+DE+DS+G R+E S ++T+ +LL ++DGF+ + + +I ATN + LD+AL+
Sbjct: 239 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 298
Query: 1435 RPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQA 1614
RPGR D ++ P P+ + R +ILK + K+ + ++ IA G SGAE++ + +A
Sbjct: 299 RPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 358
Query: 1615 ALKAAVDGKEMVTMKELEFFKDKVLMGPE------RKVWK 1716
+ A + + VT ++ E KV+ +K+WK
Sbjct: 359 GMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 398
>ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens].
Length = 406
Score = 182 bits (461), Expect = 1e-45
Identities = 105/280 (37%), Positives = 168/280 (60%), Gaps = 16/280 (5%)
Frame = +1
Query: 925 LDSAVDPV-------QMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGI 1080
L + VDP+ ++ + T+E + G+++ +E++EV+E +K+P+ F LG PKG+
Sbjct: 127 LPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGV 186
Query: 1081 LLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVI 1260
LL GPPGTGKTLLARAVA D F SGSE + F+G GA +R LF A+ +AP +I
Sbjct: 187 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 246
Query: 1261 FIDELDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALI 1434
F+DE+DS+G R+E S ++T+ +LL ++DGF+ + + +I ATN + LD+AL+
Sbjct: 247 FMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 306
Query: 1435 RPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQA 1614
RPGR D ++ P P+ + R +ILK + K+ + ++ IA G SGAE++ + +A
Sbjct: 307 RPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 366
Query: 1615 ALKAAVDGKEMVTMKELEFFKDKVLMGPE------RKVWK 1716
+ A + + VT ++ E KV+ +K+WK
Sbjct: 367 GMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 406
>ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens].
Length = 806
Score = 179 bits (453), Expect = 9e-45
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Frame = +1
Query: 946 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLA 1122
V++ VT+E + G+E+ K+ELQE+V++ +++P KF G KG+L GPPG GKTLLA
Sbjct: 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528
Query: 1123 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVG---GK 1293
+A+A E F G E M+ G + +R +F +A+ APCV+F DELDS+ G
Sbjct: 529 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG 588
Query: 1294 RIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPR 1473
I R INQ+L EMDG + V IIGATN P+ +D A++RPGR D + +P
Sbjct: 589 NIGDGGGAADR-VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1474 PDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVT 1653
PD K R ILK L K + VD E +A+ T GFSGA+L + +A A + E
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707
Query: 1654 MKELE 1668
+E E
Sbjct: 708 RRERE 712
Score = 173 bits (439), Expect = 4e-43
Identities = 97/238 (40%), Positives = 141/238 (59%), Gaps = 1/238 (0%)
Frame = +1
Query: 952 MKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARA 1128
+ V ++ + G + +++E+VE L++P F +G K P+GILL GPPGTGKTL+ARA
Sbjct: 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257
Query: 1129 VAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESP 1308
VA E F+ +G E G S +R F EA+ NAP +IFIDELD++ KR E
Sbjct: 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKT 316
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
R+ ++QLL MDG K VI++ ATN P ++D AL R GRFD +V + PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R EIL+ + +K VD E +A T G GA+L L ++AAL+A +++ +++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>ref|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Homo sapiens].
Length = 433
Score = 172 bits (437), Expect = 7e-43
Identities = 97/261 (37%), Positives = 157/261 (60%), Gaps = 6/261 (2%)
Frame = +1
Query: 925 LDSAVDPVQMK---NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVG 1092
+D V +Q++ +VT+ V G +E ++L+EVVE L +P++F LG + PKG+LL G
Sbjct: 157 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 216
Query: 1093 PPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDE 1272
PPGTGKTL ARAVA D F GSE + +VG GA +R LF A+ C+IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 1273 LDSVGGKRIESPMHPYS--RQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGR 1446
+D++GG R + + ++T+ +L+ ++DGF P + ++ ATN P+ LD AL+RPGR
Sbjct: 277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 1447 FDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKA 1626
D ++ PD++GRT I K + + ++ + E++AR +GAE+ ++ +A + A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 1627 AVDGKEMVTMKELEFFKDKVL 1689
+++ T K+ +KV+
Sbjct: 397 IRARRKIATEKDFLEAVNKVI 417
>ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens].
Length = 403
Score = 167 bits (422), Expect = 4e-41
Identities = 93/238 (39%), Positives = 142/238 (59%), Gaps = 3/238 (1%)
Frame = +1
Query: 958 NVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVA 1134
NV++ + G+ E +EL+EV+E L NP+ F +G PKG LL GPPGTGKTLLARAVA
Sbjct: 143 NVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVA 202
Query: 1135 GEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIE--SP 1308
+ D F S + ++G A IR +F A+ + PC+IF+DE+D++GG+R +
Sbjct: 203 SQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTS 262
Query: 1309 MHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKG 1488
++T+ +LL +MDGF V +I ATN P+ LD AL+RPGR D ++ + P+ +
Sbjct: 263 ADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQA 322
Query: 1489 RTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
R +ILK + I +D E I + + GF+GA+L N+ +A + A + V ++
Sbjct: 323 RLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQED 380
>ref|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapiens].
Length = 439
Score = 160 bits (405), Expect = 3e-39
Identities = 97/271 (35%), Positives = 155/271 (57%), Gaps = 6/271 (2%)
Frame = +1
Query: 868 IYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNP--- 1038
+ G+ K+ +L + T DS V +++ E + +++QE+VE + P
Sbjct: 150 LVGVNKDSYLILE-TLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNH 208
Query: 1039 -QKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRI 1215
+KF LG + PKG+L+ GPPGTGKTLLARA A + F +G + +MF+G GA +
Sbjct: 209 KEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLV 268
Query: 1216 RNLFREAKANAPCVIFIDELDSVGGKRIESPM--HPYSRQTINQLLAEMDGFKPNEGVII 1389
R+ F AK AP +IFIDELD++G KR +S ++T+ +LL ++DGF+PN V +
Sbjct: 269 RDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKV 328
Query: 1390 IGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGT 1569
I ATN + LD AL+R GR D ++ P P+ + R I++ + K+ V+ E +AR T
Sbjct: 329 IAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCT 388
Query: 1570 VGFSGAELENLVNQAALKAAVDGKEMVTMKE 1662
F+GA+ + + +A + A G +T ++
Sbjct: 389 DDFNGAQCKAVCVEAGMIALRRGATELTHED 419
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,150,643
Number of extensions: 1459994
Number of successful extensions: 5070
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 4986
Number of HSP's successfully gapped: 59
Length of query: 585
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 477
Effective length of database: 14,737,052
Effective search space: 7029573804
Effective search space used: 7029573804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013767
(1756 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 331 8e-88
>Sscrofa_Chr10
|| Length = 79102373
Score = 331 bits (167), Expect = 8e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 293 agcctatacttaacttaagagaccttggattatctgaattaaaaattggacagattgatc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54031494 agcctatacttaacttaagagaccttggattatctgaattaaaaattggacagattgatc 54031553
Query: 353 aactggtagacagtctacttcctggattttgtaaaggcaagaatgtttcttcccattggc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54031554 aactggtagacagtctacttcctggattttgtaaaggcaagaatgtttcttcccattggc 54031613
Query: 413 atacatctcatgtttctgcacagtccttctttgaaaataaatatggt 459
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54031614 atacatctcatgtttctgcacagtccttctttgaaaataaatatggt 54031660
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 1074 aggaattcttttagttggaccaccagggacaggaaagacacttcttgcccgagctgtggc 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54051647 aggaattcttttagttggaccaccagggacaggaaagacacttcttgcccgagctgtggc 54051706
Query: 1134 cggagaagctgatgttcctttttattatgcttcgggatcagaatttgatgagatgtttgt 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54051707 cggagaagctgatgttcctttttattatgcttcgggatcagaatttgatgagatgtttgt 54051766
Query: 1194 gggtgtgggagccagccgtataagaaatctttttag 1229
||||||||||||||||||||||||||||||||||||
Sbjct: 54051767 gggtgtgggagccagccgtataagaaatctttttag 54051802
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 665 aggggtttcttttgcgggacagaggatcagacattgagagtttagacaaactcatgaaaa 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54044012 aggggtttcttttgcgggacagaggatcagacattgagagtttagacaaactcatgaaaa 54044071
Query: 725 ccaaaaacatacctgaagctcatcaagatgcttttaaaactggttttgcagagggttttc 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54044072 ccaaaaacatacctgaagctcatcaagatgcttttaaaactggttttgcagagggttttc 54044131
Query: 785 tgaaagctcaggcactaacacaaaaaaccaatg 817
|||||||||||||||||||||||||||||||||
Sbjct: 54044132 tgaaagctcaggcactaacacaaaaaaccaatg 54044164
Score = 295 bits (149), Expect = 4e-77
Identities = 155/157 (98%)
Strand = Plus / Plus
Query: 1538 ctgttgacccagaaatcatagctcgaggtactgttggcttttctggagcagagttggaaa 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54056902 ctgttgacccagaaatcatagctcgaggtactgttggcttttctggagcagagttggaaa 54056961
Query: 1598 atcttgtgaaccaagctgcattgaaggcagctgttgatggaaaagaaatggttaccatga 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54056962 atcttgtgaaccaagctgcattgaaggcagctgttgatggaaaagaaatggttaccatga 54057021
Query: 1658 aggaactagagtttttcaaagataaagtcctaatggg 1694
||||||||||||||| |||||||||| ||||||||||
Sbjct: 54057022 aggaactagagttttccaaagataaaatcctaatggg 54057058
Score = 266 bits (134), Expect = 4e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 161 aggttactgttcctctgagtcatctaatcaatgccttccattcaccaaaaaatacgtcta 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54023858 aggttactgttcctctgagtcatctaatcaatgccttccattcaccaaaaaatacgtcta 54023917
Query: 221 tttctgtcagtgcatcgttttctcaaaaccaacatcgagatgtagttcctgagcatgagg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54023918 tttctgtcagtgcatcgttttctcaaaaccaacatcgagatgtagttcctgagcatgagg 54023977
Query: 281 ctcccagcagtgag 294
||||||||||||||
Sbjct: 54023978 ctcccagcagtgag 54023991
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1229 gagaagcaaaagcaaatgccccatgtgttatatttattgatgaactagattctgttggtg 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54052939 gagaagcaaaagcaaatgccccatgtgttatatttattgatgaactagattctgttggtg 54052998
Query: 1289 ggaagcgaattgaatcgccaatgcatccatattcacggcagactataaatcaacttcttg 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54052999 ggaagcgaattgaatcgccaatgcatccatattcacggcagactataaatcaacttcttg 54053058
Query: 1349 ctgaaatggatgg 1361
|||||||||||||
Sbjct: 54053059 ctgaaatggatgg 54053071
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 554 cagtttttgtacagtctcggggttttaaaactttgaaatcaaggacacgacgtctgcagt 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54041509 cagtttttgtacagtctcggggttttaaaactttgaaatcaaggacacgacgtctgcagt 54041568
Query: 614 ccacctctgaaagattagcagaaacacagcatacagcaccatcattcgtaaagg 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54041569 ccacctctgaaagattagcagaaacacagcatacagcaccatcattcgtaaagg 54041622
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1425 cgctttaatacgtcctggtcgttttgacatgcaggttacagttccaaggccagatgtaaa 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54055539 cgctttaatacgtcctggtcgttttgacatgcaggttacagttccaaggccagatgtaaa 54055598
Query: 1485 aggtcgaacagaaatcttgaagtggtatctcaataaaataaagtttgatcagt 1537
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54055599 aggtcgaacagaaatcttgaagtggtatctcaataaaataaagtttgatcagt 54055651
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 457 ggttccttagatatatttagtactttacgttcctcttgcttgtacagacaacattcaaga 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54034317 ggttccttagatatatttagtactttacgttcctcttgcttgtacagacaacattcaaga 54034376
Query: 517 actcttaaaagaatttgttcagatcttcagtactggccag 556
||||||||||||||||||||||||||||||||||||||||
Sbjct: 54034377 actcttaaaagaatttgttcagatcttcagtactggccag 54034416
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 985 gtggaggaagctaaacaagaattacaagaagttgttgaattcttgaagaatccacaaaaa 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54048970 gtggaggaagctaaacaagaattacaagaagttgttgaattcttgaagaatccacaaaaa 54049029
Query: 1045 tttactgttcttggaggtaaacttcctaaagg 1076
||||||||||||||||||||||||||||||||
Sbjct: 54049030 tttactgttcttggaggtaaacttcctaaagg 54049061
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 901 gtccgcttccggacaacaacagggcttgattctgccgtagatcctgtgcagatgaaaaat 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54046150 gtccgcttccggacaacaacagggcttgattctgccgtagatcctgtgcagatgaaaaat 54046209
Query: 961 gttacctttgaacatgttaaaggagt 986
||||||||||||||||||||||||||
Sbjct: 54046210 gttacctttgaacatgttaaaggagt 54046235
Score = 168 bits (85), Expect = 7e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 817 gattctctaagaagaactcgtctgattgtctttattctgctggttgttggcatttatgga 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54044567 gattctctaagaagaactcgtctgattgtctttattctgctggttgttggcatttatgga 54044626
Query: 877 ctcttaaaaaacccttttttatctg 901
|||||||||||||||||||||||||
Sbjct: 54044627 ctcttaaaaaacccttttttatctg 54044651
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1361 gttttaaacccaatgaaggagttatcatcataggagccacaaacttcccagaggcattag 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54054020 gttttaaacccaatgaaggagttatcatcataggagccacaaacttcccagaggcattag 54054079
Query: 1421 ataa 1424
||||
Sbjct: 54054080 ataa 54054083
Score = 127 bits (64), Expect = 2e-26
Identities = 91/100 (91%)
Strand = Plus / Minus
Query: 1438 cctggtcgttttgacatgcaggttacagttccaaggccagatgtaaaaggtcgaacagaa 1497
||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 77580675 cctggtcattttgacatgcaggttacagttctaaggccagatgtaaaaggttaaacagaa 77580616
Query: 1498 atcttgaagtggtatctcaataaaataaagtttgatcagt 1537
|||||||| |||||| | || ||||||||||| |||||||
Sbjct: 77580615 atcttgaaatggtatttaaagaaaataaagttggatcagt 77580576
Score = 83.8 bits (42), Expect = 3e-13
Identities = 62/66 (93%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 1693 ggacctgaacgaa-aagtgtggaaattgaatacaaaa-caaaacgatcacagcgtatcat 1750
||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 54057933 ggacctgaacgaagaagtgtggaaattgataacaaaaacaaaacgatcacagcgtatcat 54057992
Query: 1751 gaatct 1756
||||||
Sbjct: 54057993 gaatct 54057998
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 64,328,613
Number of extensions: 390
Number of successful extensions: 390
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 15
Length of query: 1756
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1734
Effective length of database: 2,808,408,574
Effective search space: 4869780467316
Effective search space used: 4869780467316
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)