Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013768
(920 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029616.1| coiled-coil domain-containing protein 115 [B... 249 2e-66
Alignment gi|XP_002696395.1| PREDICTED: coiled-coil domain-containing pro... 243 2e-64
Alignment gi|XP_871617.1| PREDICTED: coiled-coil domain-containing protei... 243 2e-64
>ref|NP_001029616.1| coiled-coil domain-containing protein 115 [Bos taurus].
Length = 180
Score = 249 bits (636), Expect = 2e-66
Identities = 125/150 (83%), Positives = 136/150 (90%)
Frame = +2
Query: 134 KRAALNARVEEGWLSLSKARYAMGAKSVGPLQYASRMEPQVCVCTSEAQDGLQKFWLVRA 313
KR ALNARVEEGWLSLSKARYAMGAKSVGPLQYAS MEPQV V TSE+QDGLQKFW+VRA
Sbjct: 27 KRQALNARVEEGWLSLSKARYAMGAKSVGPLQYASHMEPQVRVGTSESQDGLQKFWMVRA 86
Query: 314 GARTPEEVGPRESALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGLQ 493
G +TPEEVG RE+ALR+RKG +T EP+ SPAPQ+PL WFGILVPHSLRQAQASFREGLQ
Sbjct: 87 GTQTPEEVGSREAALRRRKGLPRTPEPDSSPAPQNPLKWFGILVPHSLRQAQASFREGLQ 146
Query: 494 LAADMASLQIRIDWGRNQLRGLQEKLKQLE 583
LAADMASLQ RI WG++QL+ LQEKLKQLE
Sbjct: 147 LAADMASLQSRITWGQSQLQELQEKLKQLE 176
>ref|XP_002696395.1| PREDICTED: coiled-coil domain-containing protein 115-like [Bos
taurus].
Length = 221
Score = 243 bits (620), Expect = 2e-64
Identities = 122/146 (83%), Positives = 131/146 (89%)
Frame = +2
Query: 146 LNARVEEGWLSLSKARYAMGAKSVGPLQYASRMEPQVCVCTSEAQDGLQKFWLVRAGART 325
LNARVEEGWLSLSKARYAMGA SVGPLQYAS MEPQV V TSEAQDGLQKFW+VRAG +T
Sbjct: 72 LNARVEEGWLSLSKARYAMGANSVGPLQYASHMEPQVRVGTSEAQDGLQKFWMVRAGTQT 131
Query: 326 PEEVGPRESALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGLQLAAD 505
PEEVG RE+AL +RKG +T EP+ SPAPQ+PL WFGILVPHSLRQAQASFREGLQLAAD
Sbjct: 132 PEEVGSREAALHRRKGLPRTPEPDSSPAPQNPLKWFGILVPHSLRQAQASFREGLQLAAD 191
Query: 506 MASLQIRIDWGRNQLRGLQEKLKQLE 583
MASLQ RI WGR+QL+ LQEKLKQLE
Sbjct: 192 MASLQSRITWGRSQLQELQEKLKQLE 217
>ref|XP_871617.1| PREDICTED: coiled-coil domain-containing protein 115-like [Bos
taurus].
Length = 221
Score = 243 bits (620), Expect = 2e-64
Identities = 122/146 (83%), Positives = 131/146 (89%)
Frame = +2
Query: 146 LNARVEEGWLSLSKARYAMGAKSVGPLQYASRMEPQVCVCTSEAQDGLQKFWLVRAGART 325
LNARVEEGWLSLSKARYAMGA SVGPLQYAS MEPQV V TSEAQDGLQKFW+VRAG +T
Sbjct: 72 LNARVEEGWLSLSKARYAMGANSVGPLQYASHMEPQVRVGTSEAQDGLQKFWMVRAGTQT 131
Query: 326 PEEVGPRESALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGLQLAAD 505
PEEVG RE+AL +RKG +T EP+ SPAPQ+PL WFGILVPHSLRQAQASFREGLQLAAD
Sbjct: 132 PEEVGSREAALHRRKGLPRTPEPDSSPAPQNPLKWFGILVPHSLRQAQASFREGLQLAAD 191
Query: 506 MASLQIRIDWGRNQLRGLQEKLKQLE 583
MASLQ RI WGR+QL+ LQEKLKQLE
Sbjct: 192 MASLQSRITWGRSQLQELQEKLKQLE 217
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,390,619
Number of extensions: 879050
Number of successful extensions: 5955
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5839
Number of HSP's successfully gapped: 3
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013768
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013768
(920 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848318.1| PREDICTED: hypothetical protein XP_843225 [Cani... 271 5e-73
>ref|XP_848318.1| PREDICTED: hypothetical protein XP_843225 [Canis familiaris].
Length = 180
Score = 271 bits (694), Expect = 5e-73
Identities = 134/150 (89%), Positives = 142/150 (94%)
Frame = +2
Query: 134 KRAALNARVEEGWLSLSKARYAMGAKSVGPLQYASRMEPQVCVCTSEAQDGLQKFWLVRA 313
KRAALNARVEEGWLSLSKARYAMGAKSVGPLQYAS MEPQVCV TSEAQDGLQKFW++RA
Sbjct: 27 KRAALNARVEEGWLSLSKARYAMGAKSVGPLQYASHMEPQVCVYTSEAQDGLQKFWVMRA 86
Query: 314 GARTPEEVGPRESALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGLQ 493
A+TPEE+GPRE+ALR+RKG TKT EPE SPAP+DPLNWFGILVPHSLR AQASFREGLQ
Sbjct: 87 SAQTPEELGPREAALRRRKGLTKTPEPESSPAPRDPLNWFGILVPHSLRHAQASFREGLQ 146
Query: 494 LAADMASLQIRIDWGRNQLRGLQEKLKQLE 583
LAADMASLQIRIDWGR+QLRGLQEKLK LE
Sbjct: 147 LAADMASLQIRIDWGRSQLRGLQEKLKHLE 176
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,789,375
Number of extensions: 903194
Number of successful extensions: 5825
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5686
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013768
(920 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133352.2| PREDICTED: coiled-coil domain-containing pro... 183 1e-48
>ref|XP_003133352.2| PREDICTED: coiled-coil domain-containing protein 115-like [Sus
scrofa].
Length = 169
Score = 183 bits (464), Expect(2) = 1e-48
Identities = 90/91 (98%), Positives = 90/91 (98%)
Frame = +2
Query: 311 AGARTPEEVGPRESALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGL 490
AGARTPEEVGPRESALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGL
Sbjct: 75 AGARTPEEVGPRESALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGL 134
Query: 491 QLAADMASLQIRIDWGRNQLRGLQEKLKQLE 583
QLAADMASLQIRIDWGRNQLRGL EKLKQLE
Sbjct: 135 QLAADMASLQIRIDWGRNQLRGLLEKLKQLE 165
Score = 28.1 bits (61), Expect(2) = 1e-48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 238 PHGAAGLRLHQ 270
PHGAAGLRLHQ
Sbjct: 55 PHGAAGLRLHQ 65
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,561,445
Number of extensions: 568134
Number of successful extensions: 3937
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3841
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013768
(920 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081435.1| coiled-coil domain-containing protein 115 [Mus ... 241 6e-64
>ref|NP_081435.1| coiled-coil domain-containing protein 115 [Mus musculus].
Length = 180
Score = 241 bits (615), Expect = 6e-64
Identities = 119/150 (79%), Positives = 136/150 (90%)
Frame = +2
Query: 134 KRAALNARVEEGWLSLSKARYAMGAKSVGPLQYASRMEPQVCVCTSEAQDGLQKFWLVRA 313
KRAALNARVEEGWLSL+KARYAMGAKSVGPLQYASRMEPQVCV SEAQDG Q F +++A
Sbjct: 27 KRAALNARVEEGWLSLAKARYAMGAKSVGPLQYASRMEPQVCVRASEAQDGPQTFRVIKA 86
Query: 314 GARTPEEVGPRESALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGLQ 493
A+TPEEVGP E++LR+RKGPTKT E + PQDPLNWFGILVPHSLRQAQASFR+GLQ
Sbjct: 87 DAQTPEEVGPSEASLRRRKGPTKTKELGSAVVPQDPLNWFGILVPHSLRQAQASFRDGLQ 146
Query: 494 LAADMASLQIRIDWGRNQLRGLQEKLKQLE 583
LAAD+ASLQ RI+WG++QLRGLQ+KLK+L+
Sbjct: 147 LAADIASLQTRINWGQSQLRGLQKKLKELD 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,724,552
Number of extensions: 730829
Number of successful extensions: 4676
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4554
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013768
(920 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115733.2| coiled-coil domain-containing protein 115 [Homo... 257 1e-68
>ref|NP_115733.2| coiled-coil domain-containing protein 115 [Homo sapiens].
Length = 180
Score = 257 bits (656), Expect = 1e-68
Identities = 127/150 (84%), Positives = 136/150 (90%)
Frame = +2
Query: 134 KRAALNARVEEGWLSLSKARYAMGAKSVGPLQYASRMEPQVCVCTSEAQDGLQKFWLVRA 313
KR LNARVEEGWLSL+KARYAMGAKSVGPLQYAS MEPQVC+ SEAQ+GLQKF +VRA
Sbjct: 27 KRTVLNARVEEGWLSLAKARYAMGAKSVGPLQYASHMEPQVCLHASEAQEGLQKFKVVRA 86
Query: 314 GARTPEEVGPRESALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGLQ 493
G PEEVGPRE+ LR+RKGPTKT EPE S APQDPLNWFGILVPHSLRQAQASFR+GLQ
Sbjct: 87 GVHAPEEVGPREAGLRRRKGPTKTPEPESSEAPQDPLNWFGILVPHSLRQAQASFRDGLQ 146
Query: 494 LAADMASLQIRIDWGRNQLRGLQEKLKQLE 583
LAAD+ASLQ RIDWGR+QLRGLQEKLKQLE
Sbjct: 147 LAADIASLQNRIDWGRSQLRGLQEKLKQLE 176
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,100,313
Number of extensions: 885614
Number of successful extensions: 5710
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5600
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013768
(920 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 864 0.0
gb|GL893609.2| Sus scrofa unplaced genomic scaffold ChrUScaf1494 841 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 864 bits (436), Expect = 0.0
Identities = 436/436 (100%)
Strand = Plus / Plus
Query: 485 ggtctgcagctggctgcagacatggccagccttcagattcgaatcgactggggtcgaaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35899796 ggtctgcagctggctgcagacatggccagccttcagattcgaatcgactggggtcgaaac 35899855
Query: 545 cagctacgggggctccaggagaaactcaagcagctggagcctggggctgcctgacctgcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35899856 cagctacgggggctccaggagaaactcaagcagctggagcctggggctgcctgacctgcc 35899915
Query: 605 accacaacggcagggcagtgagcatagctgttccttaatgtggctgccttatctcaggcc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35899916 accacaacggcagggcagtgagcatagctgttccttaatgtggctgccttatctcaggcc 35899975
Query: 665 ttcttccttcacagatcccccacccccacctccccagttagttccacctcattatttctc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35899976 ttcttccttcacagatcccccacccccacctccccagttagttccacctcattatttctc 35900035
Query: 725 tggtcctcatgtttccaactttgttaggagggaaaatttgaagaggcaagctgattaatg 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35900036 tggtcctcatgtttccaactttgttaggagggaaaatttgaagaggcaagctgattaatg 35900095
Query: 785 ttgaaaggcacttccctgaaactatctttagacttgttttctcctaggttagttcacatc 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35900096 ttgaaaggcacttccctgaaactatctttagacttgttttctcctaggttagttcacatc 35900155
Query: 845 actcaacaactgtaacaacatcgtgagtaactcagctggagttcttcattataggatgag 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35900156 actcaacaactgtaacaacatcgtgagtaactcagctggagttcttcattataggatgag 35900215
Query: 905 atactgcacagctagt 920
||||||||||||||||
Sbjct: 35900216 atactgcacagctagt 35900231
Score = 313 bits (158), Expect = 9e-83
Identities = 164/166 (98%)
Strand = Plus / Plus
Query: 2 gggcgctgatcggtcgacctggaagaagccggctcccaactgtgtgaggaacccatggcg 61
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35896873 gggcgctgattgggcgacctggaagaagccggctcccaactgtgtgaggaacccatggcg 35896932
Query: 62 gcagcgaaccttcgagcggagctggattcgctgctcctgcagctgctcggggacctggag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35896933 gcagcgaaccttcgagcggagctggattcgctgctcctgcagctgctcggggacctggag 35896992
Query: 122 gaactggagaccaagcgcgcggcgctgaacgcccgggtggaagagg 167
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35896993 gaactggagaccaagcgcgcggcgctgaacgcccgggtggaagagg 35897038
Score = 264 bits (133), Expect = 8e-68
Identities = 136/137 (99%)
Strand = Plus / Plus
Query: 351 cagctctgcgtaagcgcaagggtcccaccaagacggcagagccagaaccttccccagctc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35898020 cagctctgcgtaagcgcaagggtcccaccaagacggcagagccagaaccttccccagctc 35898079
Query: 411 cccaggaccctctgaactggtttggaatcctcgttcctcacagtctgcggcaggctcaag 470
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 35898080 cccaggaccctctgaactggtttggaatccttgttcctcacagtctgcggcaggctcaag 35898139
Query: 471 ccagcttccgggagggt 487
|||||||||||||||||
Sbjct: 35898140 ccagcttccgggagggt 35898156
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 165 agggctggctctcgctttccaaagctcgctacgctatgggtgccaagtcggtagggccct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35897107 agggctggctctcgctttccaaagctcgctacgctatgggtgccaagtcggtagggccct 35897166
Query: 225 tgcagtatgcctcccgcatggagccgcaggtctgcgtctgcaccag 270
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35897167 tgcagtatgcctcccgcatggagccgcaggtctgcgtctgcaccag 35897212
Score = 168 bits (85), Expect = 3e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 269 agcgaggcccaggatggactccagaagttctggttggtgagagccggcgccaggactcca 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35897298 agcgaggcccaggatggactccagaagttctggttggtgagagccggcgccaggactcca 35897357
Query: 329 gaggaggtggggcctcgcgagtcag 353
|||||||||||||||||||||||||
Sbjct: 35897358 gaggaggtggggcctcgcgagtcag 35897382
>gb|GL893609.2| Sus scrofa unplaced genomic scaffold ChrUScaf1494
Length = 92479
Score = 841 bits (424), Expect = 0.0
Identities = 433/436 (99%)
Strand = Plus / Plus
Query: 485 ggtctgcagctggctgcagacatggccagccttcagattcgaatcgactggggtcgaaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22055 ggtctgcagctggctgcagacatggccagccttcagattcgaatcgactggggtcgaaac 22114
Query: 545 cagctacgggggctccaggagaaactcaagcagctggagcctggggctgcctgacctgcc 604
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22115 cagctacgggggctcctggagaaactcaagcagctggagcctggggctgcctgacctgcc 22174
Query: 605 accacaacggcagggcagtgagcatagctgttccttaatgtggctgccttatctcaggcc 664
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 22175 accacaacggcagggcagtgagcatagctgttccttaacctggctgccttatctcaggcc 22234
Query: 665 ttcttccttcacagatcccccacccccacctccccagttagttccacctcattatttctc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22235 ttcttccttcacagatcccccacccccacctccccagttagttccacctcattatttctc 22294
Query: 725 tggtcctcatgtttccaactttgttaggagggaaaatttgaagaggcaagctgattaatg 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22295 tggtcctcatgtttccaactttgttaggagggaaaatttgaagaggcaagctgattaatg 22354
Query: 785 ttgaaaggcacttccctgaaactatctttagacttgttttctcctaggttagttcacatc 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22355 ttgaaaggcacttccctgaaactatctttagacttgttttctcctaggttagttcacatc 22414
Query: 845 actcaacaactgtaacaacatcgtgagtaactcagctggagttcttcattataggatgag 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22415 actcaacaactgtaacaacatcgtgagtaactcagctggagttcttcattataggatgag 22474
Query: 905 atactgcacagctagt 920
||||||||||||||||
Sbjct: 22475 atactgcacagctagt 22490
Score = 264 bits (133), Expect = 8e-68
Identities = 136/137 (99%)
Strand = Plus / Plus
Query: 351 cagctctgcgtaagcgcaagggtcccaccaagacggcagagccagaaccttccccagctc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20279 cagctctgcgtaagcgcaagggtcccaccaagacggcagagccagaaccttccccagctc 20338
Query: 411 cccaggaccctctgaactggtttggaatcctcgttcctcacagtctgcggcaggctcaag 470
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 20339 cccaggaccctctgaactggtttggaatccttgttcctcacagtctgcggcaggctcaag 20398
Query: 471 ccagcttccgggagggt 487
|||||||||||||||||
Sbjct: 20399 ccagcttccgggagggt 20415
Score = 95.6 bits (48), Expect = 4e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 306 tgagagccggcgccaggactccagaggaggtggggcctcgcgagtcag 353
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19594 tgagagccggcgccaggactccagaggaggtggggcctcgcgagtcag 19641
Score = 60.0 bits (30), Expect = 2e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 241 catggagccgcaggtctgcgtctgcaccag 270
||||||||||||||||||||||||||||||
Sbjct: 19412 catggagccgcaggtctgcgtctgcaccag 19441
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,877,346
Number of extensions: 340
Number of successful extensions: 340
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 9
Length of query: 920
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 899
Effective length of database: 2,808,413,156
Effective search space: 2524763427244
Effective search space used: 2524763427244
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)