Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013772
(2439 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853206.1| PREDICTED: similar to CSE1 chromosome segregati... 994 0.0
Alignment gi|XP_867035.1| PREDICTED: similar to CSE1 chromosome segregati... 959 0.0
Alignment gi|XP_542501.2| PREDICTED: similar to Importin-7 (Imp7) (Ran-bi... 62 3e-09
Alignment gi|XP_860615.1| PREDICTED: similar to Ran binding protein 11 is... 52 2e-06
Alignment gi|XP_535251.2| PREDICTED: similar to Ran binding protein 11 is... 52 2e-06
Alignment gi|XP_865221.1| PREDICTED: similar to importin 8 isoform 4 [Can... 51 5e-06
Alignment gi|XP_852181.1| PREDICTED: similar to importin 8 isoform 1 [Can... 51 5e-06
Alignment gi|XP_865169.1| PREDICTED: similar to importin 8 isoform 2 [Can... 51 5e-06
Alignment gi|XP_537126.2| PREDICTED: similar to importin 9 [Canis familia... 50 8e-06
>ref|XP_853206.1| PREDICTED: similar to CSE1 chromosome segregation 1-like protein
isoform a isoform 2 [Canis familiaris].
Length = 872
Score = 994 bits (2571), Expect(2) = 0.0
Identities = 509/562 (90%), Positives = 512/562 (91%)
Frame = +3
Query: 654 ALPLTNLFKATIELCSTHANDAXXXXXXXXXXXXXXXXXXXXNFQDLPEFFEDNMETWMN 833
ALPLTNLFKATIELCSTHANDA NFQDLPEFFEDNMETWMN
Sbjct: 82 ALPLTNLFKATIELCSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMN 141
Query: 834 NFHTLLTLDNKLLQTDDXXXXXXXXXXKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL 1013
NFHTLLTLDNKLLQTDD KSQICDNAALYAQKYDEEFQ YLPRFVTAIWNL
Sbjct: 142 NFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQLYLPRFVTAIWNL 201
Query: 1014 LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMXXXXXXXX 1193
LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNM
Sbjct: 202 LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEE 261
Query: 1194 XXXXNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP 1373
NSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP
Sbjct: 262 AFEDNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP 321
Query: 1374 SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL 1553
SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL
Sbjct: 322 SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL 381
Query: 1554 KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL 1733
KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL
Sbjct: 382 KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL 441
Query: 1734 FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ 1913
FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLI+QLTQ
Sbjct: 442 FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLISQLTQ 501
Query: 1914 KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI 2093
KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI
Sbjct: 502 KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI 561
Query: 2094 PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLSPAFLERGSXIHS 2273
PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRL AFLERGS +
Sbjct: 562 PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLLQAFLERGSNTIA 621
Query: 2274 SAAADKIPGFVXVFQKLIASKA 2339
SAAADKIPG + VFQKLIASKA
Sbjct: 622 SAAADKIPGLLGVFQKLIASKA 643
Score = 154 bits (389), Expect(2) = 0.0
Identities = 74/75 (98%), Positives = 74/75 (98%)
Frame = +1
Query: 412 MLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKR 591
MLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKR
Sbjct: 1 MLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKR 60
Query: 592 YHHEFKSNELWTEIK 636
Y HEFKSNELWTEIK
Sbjct: 61 YRHEFKSNELWTEIK 75
Score = 55.1 bits (131), Expect = 3e-07
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +1
Query: 2353 FYLSNSIIEHMPPESVDQYRKQNLILLFQ 2439
FYL NSIIEHMPPESVDQYRKQ ILLFQ
Sbjct: 649 FYLLNSIIEHMPPESVDQYRKQIFILLFQ 677
>ref|XP_867035.1| PREDICTED: similar to CSE1 chromosome segregation 1-like protein
isoform a isoform 5 [Canis familiaris].
Length = 754
Score = 959 bits (2478), Expect(2) = 0.0
Identities = 487/520 (93%), Positives = 490/520 (94%)
Frame = +3
Query: 780 NFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTDDXXXXXXXXXXKSQICDNAALYAQKY 959
NFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTDD KSQICDNAALYAQKY
Sbjct: 6 NFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKY 65
Query: 960 DEEFQRYLPRFVTAIWNLLVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTS 1139
DEEFQ YLPRFVTAIWNLLVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTS
Sbjct: 66 DEEFQLYLPRFVTAIWNLLVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTS 125
Query: 1140 ICEKVIVPNMXXXXXXXXXXXXNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVT 1319
ICEKVIVPNM NSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVT
Sbjct: 126 ICEKVIVPNMEFRAADEEAFEDNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVT 185
Query: 1320 GIFSGYVNSMLQEYAKNPSVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFV 1499
GIFSGYVNSMLQEYAKNPSVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFV
Sbjct: 186 GIFSGYVNSMLQEYAKNPSVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFV 245
Query: 1500 NHILPDLKSANVNEFPVLKADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYA 1679
NHILPDLKSANVNEFPVLKADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYA
Sbjct: 246 NHILPDLKSANVNEFPVLKADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYA 305
Query: 1680 AHALERLFTMRGPNNATLFTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSL 1859
AHALERLFTMRGPNNATLFTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSL
Sbjct: 306 AHALERLFTMRGPNNATLFTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSL 365
Query: 1860 LQEAIIPYIPTLITQLTQKLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEE 2039
LQEAIIPYIPTLI+QLTQKLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEE
Sbjct: 366 LQEAIIPYIPTLISQLTQKLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEE 425
Query: 2040 ALFLVFTEILQNDVQEFIPYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIP 2219
ALFLVFTEILQNDVQEFIPYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIP
Sbjct: 426 ALFLVFTEILQNDVQEFIPYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIP 485
Query: 2220 ALVRLSPAFLERGSXIHSSAAADKIPGFVXVFQKLIASKA 2339
ALVRL AFLERGS +SAAADKIPG + VFQKLIASKA
Sbjct: 486 ALVRLLQAFLERGSNTIASAAADKIPGLLGVFQKLIASKA 525
Score = 55.1 bits (131), Expect(2) = 0.0
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +1
Query: 2353 FYLSNSIIEHMPPESVDQYRKQNLILLFQ 2439
FYL NSIIEHMPPESVDQYRKQ ILLFQ
Sbjct: 531 FYLLNSIIEHMPPESVDQYRKQIFILLFQ 559
>ref|XP_542501.2| PREDICTED: similar to Importin-7 (Imp7) (Ran-binding protein 7)
(RanBP7) isoform 1 [Canis familiaris].
Length = 1038
Score = 62.0 bits (149), Expect = 3e-09
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +1
Query: 142 TLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQ-DNVIKVCASVTFKN 318
T+ E L+ T+DP +R AE+ L + N+ Q D ++ + KN
Sbjct: 5 TIIEALRGTMDP--ALREAAERQLNEAHKSLNFVSTLLQITMSEQLDLPVRQAGVIYLKN 62
Query: 319 YIKRNWRIVEDEPNKIC-----EADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDF 483
I + W E P I E DR I+ NIV ++ SPE I+ QL+ I I + D+
Sbjct: 63 MITQYWPDRETAPGDISPYTIPEEDRHCIRENIVEAIIHSPELIRVQLTTCIHHIIKHDY 122
Query: 484 PQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
P +W ++ ++ QS + G+L + L K Y ++
Sbjct: 123 PSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNYEYK 162
>ref|XP_860615.1| PREDICTED: similar to Ran binding protein 11 isoform 2 [Canis
familiaris].
Length = 284
Score = 52.4 bits (124), Expect = 2e-06
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 1/162 (0%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQN-YPXXXXXXXEKSQDNVIK 291
M+L+ A+ L + L + D + +PAE+ L+ E Y + D ++
Sbjct: 1 MDLNSASTVVL-QVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVR 59
Query: 292 VCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIG 471
A + FKN I R WR V P+ + E ++ ++A ++ QI Q++ I+ +
Sbjct: 60 WLAVLYFKNGIDRYWRRVA--PHALSEEEKSTLRAGLITNFNEPVNQIATQIAVLIAKVA 117
Query: 472 REDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYH 597
R D P++WP+L+ ++ + + LR +L YH
Sbjct: 118 RLDCPRQWPELIPTLIESVK------VQDDLRQHRALLTFYH 153
>ref|XP_535251.2| PREDICTED: similar to Ran binding protein 11 isoform 1 [Canis
familiaris].
Length = 975
Score = 52.4 bits (124), Expect = 2e-06
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 1/162 (0%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQN-YPXXXXXXXEKSQDNVIK 291
M+L+ A+ L + L + D + +PAE+ L+ E Y + D ++
Sbjct: 1 MDLNSASTVVL-QVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVR 59
Query: 292 VCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIG 471
A + FKN I R WR V P+ + E ++ ++A ++ QI Q++ I+ +
Sbjct: 60 WLAVLYFKNGIDRYWRRVA--PHALSEEEKSTLRAGLITNFNEPVNQIATQIAVLIAKVA 117
Query: 472 REDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYH 597
R D P++WP+L+ ++ + + LR +L YH
Sbjct: 118 RLDCPRQWPELIPTLIESVK------VQDDLRQHRALLTFYH 153
>ref|XP_865221.1| PREDICTED: similar to importin 8 isoform 4 [Canis familiaris].
Length = 775
Score = 51.2 bits (121), Expect = 5e-06
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Frame = +1
Query: 133 NLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNY------PXXXXXXXEKSQDNVIKV 294
+L + + LK T+DP +R AE L NQ+Y P + ++
Sbjct: 2 DLNLIIQALKGTIDPK--LRIAAENEL-----NQSYKIINFAPSLLRIIVSDHVEFPVRQ 54
Query: 295 CASVTFKNYIKRNWRIVEDEPNK------ICEADRVAIKANIVHLMLSSPEQIQKQLSDA 456
A++ KN + + W E P + I E DR I+ NIV ++ SP+ ++ QL+
Sbjct: 55 AAAIYLKNMVTQYWPDREPPPGEAVFPFNIHENDRQQIRDNIVEGIIRSPDLVRVQLTMC 114
Query: 457 ISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
+ I + DFP WP ++ ++ QS G L + L K Y ++
Sbjct: 115 LRAIIKYDFPGHWPAVVDKIDYYLQSQSSGSWLGSLLCLYQLVKTYEYK 163
>ref|XP_852181.1| PREDICTED: similar to importin 8 isoform 1 [Canis familiaris].
Length = 1037
Score = 51.2 bits (121), Expect = 5e-06
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Frame = +1
Query: 133 NLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNY------PXXXXXXXEKSQDNVIKV 294
+L + + LK T+DP +R AE L NQ+Y P + ++
Sbjct: 2 DLNLIIQALKGTIDPK--LRIAAENEL-----NQSYKIINFAPSLLRIIVSDHVEFPVRQ 54
Query: 295 CASVTFKNYIKRNWRIVEDEPNK------ICEADRVAIKANIVHLMLSSPEQIQKQLSDA 456
A++ KN + + W E P + I E DR I+ NIV ++ SP+ ++ QL+
Sbjct: 55 AAAIYLKNMVTQYWPDREPPPGEAVFPFNIHENDRQQIRDNIVEGIIRSPDLVRVQLTMC 114
Query: 457 ISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
+ I + DFP WP ++ ++ QS G L + L K Y ++
Sbjct: 115 LRAIIKYDFPGHWPAVVDKIDYYLQSQSSGSWLGSLLCLYQLVKTYEYK 163
>ref|XP_865169.1| PREDICTED: similar to importin 8 isoform 2 [Canis familiaris].
Length = 486
Score = 51.2 bits (121), Expect = 5e-06
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Frame = +1
Query: 133 NLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNY------PXXXXXXXEKSQDNVIKV 294
+L + + LK T+DP +R AE L NQ+Y P + ++
Sbjct: 2 DLNLIIQALKGTIDPK--LRIAAENEL-----NQSYKIINFAPSLLRIIVSDHVEFPVRQ 54
Query: 295 CASVTFKNYIKRNWRIVEDEPNK------ICEADRVAIKANIVHLMLSSPEQIQKQLSDA 456
A++ KN + + W E P + I E DR I+ NIV ++ SP+ ++ QL+
Sbjct: 55 AAAIYLKNMVTQYWPDREPPPGEAVFPFNIHENDRQQIRDNIVEGIIRSPDLVRVQLTMC 114
Query: 457 ISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
+ I + DFP WP ++ ++ QS G L + L K Y ++
Sbjct: 115 LRAIIKYDFPGHWPAVVDKIDYYLQSQSSGSWLGSLLCLYQLVKTYEYK 163
>ref|XP_537126.2| PREDICTED: similar to importin 9 [Canis familiaris].
Length = 990
Score = 50.4 bits (119), Expect = 8e-06
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +1
Query: 286 IKVCASVTFKNYIKRNWRIVEDE--PNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAI 459
I+ ASV K Y++ +W ++ P + E ++ I+ + + + S +++ ++ A+
Sbjct: 22 IRQLASVILKQYVETHWCAQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAV 81
Query: 460 SIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLR 567
S I D+P+ WP L ++ SGD + ++G +R
Sbjct: 82 SAIAHWDWPEAWPQLFNLLMEMLVSGDLNAVHGAMR 117
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,001,462
Number of extensions: 1769943
Number of successful extensions: 4299
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4296
Number of HSP's successfully gapped: 12
Length of query: 813
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 702
Effective length of database: 15,174,208
Effective search space: 10652294016
Effective search space used: 10652294016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013772
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013772
(2439 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014933.2| exportin-2 [Bos taurus]. 993 0.0
Alignment gi|NP_001179285.1| importin-7 [Bos taurus]. 62 2e-09
Alignment gi|XP_002693104.1| PREDICTED: importin 7-like [Bos taurus]. 62 2e-09
Alignment gi|NP_001193049.1| importin-8 [Bos taurus]. 52 2e-06
Alignment gi|NP_001179861.1| importin-11 [Bos taurus]. 52 2e-06
Alignment gi|XP_002696351.1| PREDICTED: importin 11 [Bos taurus]. 52 2e-06
Alignment gi|XP_002687764.1| PREDICTED: importin 7-like [Bos taurus]. 52 2e-06
>ref|NP_001014933.2| exportin-2 [Bos taurus].
Length = 971
Score = 993 bits (2568), Expect(2) = 0.0
Identities = 508/562 (90%), Positives = 512/562 (91%)
Frame = +3
Query: 654 ALPLTNLFKATIELCSTHANDAXXXXXXXXXXXXXXXXXXXXNFQDLPEFFEDNMETWMN 833
ALPLTNLFKATIELCSTHANDA NFQDLPEFFEDNMETWMN
Sbjct: 181 ALPLTNLFKATIELCSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMN 240
Query: 834 NFHTLLTLDNKLLQTDDXXXXXXXXXXKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL 1013
NFHTLLTLDNKLLQTDD KSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL
Sbjct: 241 NFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL 300
Query: 1014 LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMXXXXXXXX 1193
LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNM
Sbjct: 301 LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEE 360
Query: 1194 XXXXNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP 1373
NSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP
Sbjct: 361 AFEDNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP 420
Query: 1374 SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL 1553
SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL
Sbjct: 421 SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL 480
Query: 1554 KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL 1733
KADGIKYI IFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPN+ATL
Sbjct: 481 KADGIKYITIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNSATL 540
Query: 1734 FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ 1913
FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ
Sbjct: 541 FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ 600
Query: 1914 KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI 2093
KLLAVSKNPSKPHFNHYMFEAICLSIRITCK+NPAAVVNFEEALFLVFTEILQNDVQEFI
Sbjct: 601 KLLAVSKNPSKPHFNHYMFEAICLSIRITCKSNPAAVVNFEEALFLVFTEILQNDVQEFI 660
Query: 2094 PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLSPAFLERGSXIHS 2273
PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRL AFLERGS +
Sbjct: 661 PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLLQAFLERGSNTIA 720
Query: 2274 SAAADKIPGFVXVFQKLIASKA 2339
SAAADKIPG + VFQKLIASKA
Sbjct: 721 SAAADKIPGLLGVFQKLIASKA 742
Score = 334 bits (856), Expect(2) = 0.0
Identities = 165/174 (94%), Positives = 165/174 (94%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQDNVIKV 294
MELSDANLQTLTEYLKKTLDPDP IRRPAEKFLESVEGNQNYP EKSQDNVIKV
Sbjct: 1 MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNVIKV 60
Query: 295 CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR 474
CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR
Sbjct: 61 CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR 120
Query: 475 EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHEFKSNELWTEIK 636
EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRY HEFKSNELWTEIK
Sbjct: 121 EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYRHEFKSNELWTEIK 174
Score = 55.1 bits (131), Expect = 3e-07
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +1
Query: 2353 FYLSNSIIEHMPPESVDQYRKQNLILLFQ 2439
FYL NSIIEHMPPESVDQYRKQ ILLFQ
Sbjct: 748 FYLLNSIIEHMPPESVDQYRKQIFILLFQ 776
>ref|NP_001179285.1| importin-7 [Bos taurus].
Length = 1038
Score = 62.0 bits (149), Expect = 2e-09
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +1
Query: 142 TLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQ-DNVIKVCASVTFKN 318
T+ E L+ T+DP +R AE+ L + N+ Q D ++ + KN
Sbjct: 5 TIIEALRGTMDP--ALREAAERQLNEAHKSLNFVSTLLQITMSEQLDLPVRQAGVIYLKN 62
Query: 319 YIKRNWRIVEDEPNKIC-----EADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDF 483
I + W E P I E DR I+ NIV ++ SPE I+ QL+ I I + D+
Sbjct: 63 MITQYWPDRETAPGDISPYTIPEEDRHCIRENIVEAIIHSPELIRVQLTTCIHHIIKHDY 122
Query: 484 PQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
P +W ++ ++ QS + G+L + L K Y ++
Sbjct: 123 PSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNYEYK 162
>ref|XP_002693104.1| PREDICTED: importin 7-like [Bos taurus].
Length = 1038
Score = 62.0 bits (149), Expect = 2e-09
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +1
Query: 142 TLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQ-DNVIKVCASVTFKN 318
T+ E L+ T+DP +R AE+ L + N+ Q D ++ + KN
Sbjct: 5 TIIEALRGTMDP--ALREAAERQLNEAHKSLNFVSTLLQITMSEQLDLPVRQAGVIYLKN 62
Query: 319 YIKRNWRIVEDEPNKIC-----EADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDF 483
I + W E P I E DR I+ NIV ++ SPE I+ QL+ I I + D+
Sbjct: 63 MITQYWPDRETAPGDISPYTIPEEDRHCIRENIVEAIIHSPELIRVQLTTCIHHIIKHDY 122
Query: 484 PQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
P +W ++ ++ QS + G+L + L K Y ++
Sbjct: 123 PSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNYEYK 162
>ref|NP_001193049.1| importin-8 [Bos taurus].
Length = 1037
Score = 52.0 bits (123), Expect = 2e-06
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Frame = +1
Query: 133 NLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNY------PXXXXXXXEKSQDNVIKV 294
+L + + LK T+DP +R AE L NQ+Y P + + ++
Sbjct: 2 DLNRIIQALKGTIDPK--LRIAAENEL-----NQSYKIINFAPSLLRIIVSEHVEFPVRQ 54
Query: 295 CASVTFKNYIKRNWRIVEDEPNK------ICEADRVAIKANIVHLMLSSPEQIQKQLSDA 456
A++ KN + + W E P + I E DR I+ NIV ++ SP+ ++ QL+
Sbjct: 55 AAAIYLKNMVTQYWPDREPPPGEAIFPFNIHENDRQQIRDNIVEGIIRSPDLVRVQLTMC 114
Query: 457 ISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
+ I + DFP WP ++ ++ QS G L + L K Y ++
Sbjct: 115 LRAIIKYDFPGHWPAVVDKIDYYLQSQSSGSWLGSLLCLYQLVKTYEYK 163
>ref|NP_001179861.1| importin-11 [Bos taurus].
Length = 975
Score = 52.0 bits (123), Expect = 2e-06
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 1/162 (0%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQN-YPXXXXXXXEKSQDNVIK 291
M+L+ A+ L + L + D + +PAE+ L+ E Y + D ++
Sbjct: 1 MDLNSASTVVL-QVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVR 59
Query: 292 VCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIG 471
A + FKN I R WR V P+ + E ++ ++A ++ QI Q++ I+ +
Sbjct: 60 WLAVLYFKNGIDRYWRRVA--PHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVA 117
Query: 472 REDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYH 597
R D P++WP+L+ ++ + + LR +L YH
Sbjct: 118 RLDCPRQWPELIPTLIESVK------VQDDLRQHRALLTFYH 153
>ref|XP_002696351.1| PREDICTED: importin 11 [Bos taurus].
Length = 975
Score = 52.0 bits (123), Expect = 2e-06
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 1/162 (0%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQN-YPXXXXXXXEKSQDNVIK 291
M+L+ A+ L + L + D + +PAE+ L+ E Y + D ++
Sbjct: 1 MDLNSASTVVL-QVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVR 59
Query: 292 VCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIG 471
A + FKN I R WR V P+ + E ++ ++A ++ QI Q++ I+ +
Sbjct: 60 WLAVLYFKNGIDRYWRRVA--PHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVA 117
Query: 472 REDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYH 597
R D P++WP+L+ ++ + + LR +L YH
Sbjct: 118 RLDCPRQWPELIPTLIESVK------VQDDLRQHRALLTFYH 153
>ref|XP_002687764.1| PREDICTED: importin 7-like [Bos taurus].
Length = 1037
Score = 52.0 bits (123), Expect = 2e-06
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Frame = +1
Query: 133 NLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNY------PXXXXXXXEKSQDNVIKV 294
+L + + LK T+DP +R AE L NQ+Y P + + ++
Sbjct: 2 DLNRIIQALKGTIDPK--LRIAAENEL-----NQSYKIINFAPSLLRIIVSEHVEFPVRQ 54
Query: 295 CASVTFKNYIKRNWRIVEDEPNK------ICEADRVAIKANIVHLMLSSPEQIQKQLSDA 456
A++ KN + + W E P + I E DR I+ NIV ++ SP+ ++ QL+
Sbjct: 55 AAAIYLKNMVTQYWPDREPPPGEAIFPFNIHENDRQQIRDNIVEGIIRSPDLVRVQLTMC 114
Query: 457 ISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
+ I + DFP WP ++ ++ QS G L + L K Y ++
Sbjct: 115 LRAIIKYDFPGHWPAVVDKIDYYLQSQSSGSWLGSLLCLYQLVKTYEYK 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,698,628
Number of extensions: 1715642
Number of successful extensions: 4221
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4220
Number of HSP's successfully gapped: 9
Length of query: 813
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 702
Effective length of database: 14,008,606
Effective search space: 9834041412
Effective search space used: 9834041412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013772
(2439 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230144.1| exportin-2 [Sus scrofa]. 996 0.0
Alignment gi|XP_003360086.1| PREDICTED: exportin-2-like [Sus scrofa]. 221 2e-57
Alignment gi|XP_003134044.2| PREDICTED: importin-11-like [Sus scrofa]. 53 7e-07
Alignment gi|XP_003357166.1| PREDICTED: importin-7 [Sus scrofa]. 52 2e-06
Alignment gi|XP_003126448.2| PREDICTED: importin-8 isoform 1 [Sus scrofa]. 51 3e-06
Alignment gi|XP_003130653.2| PREDICTED: importin-9-like [Sus scrofa]. 50 8e-06
>ref|NP_001230144.1| exportin-2 [Sus scrofa].
Length = 971
Score = 996 bits (2575), Expect(2) = 0.0
Identities = 510/562 (90%), Positives = 512/562 (91%)
Frame = +3
Query: 654 ALPLTNLFKATIELCSTHANDAXXXXXXXXXXXXXXXXXXXXNFQDLPEFFEDNMETWMN 833
ALPLTNLFKATIELCSTHANDA NFQDLPEFFEDNMETWMN
Sbjct: 181 ALPLTNLFKATIELCSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMN 240
Query: 834 NFHTLLTLDNKLLQTDDXXXXXXXXXXKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL 1013
NFHTLLTLDNKLLQTDD KSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL
Sbjct: 241 NFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL 300
Query: 1014 LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMXXXXXXXX 1193
LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNM
Sbjct: 301 LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEE 360
Query: 1194 XXXXNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP 1373
NSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP
Sbjct: 361 AFEDNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP 420
Query: 1374 SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL 1553
SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL
Sbjct: 421 SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL 480
Query: 1554 KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL 1733
KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL
Sbjct: 481 KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL 540
Query: 1734 FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ 1913
FTAAEIAPFV ILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ
Sbjct: 541 FTAAEIAPFVGILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ 600
Query: 1914 KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI 2093
KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI
Sbjct: 601 KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI 660
Query: 2094 PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLSPAFLERGSXIHS 2273
PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRL AFLERGS +
Sbjct: 661 PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLLQAFLERGSNTIA 720
Query: 2274 SAAADKIPGFVXVFQKLIASKA 2339
SAAADKIPG + VFQKLIASKA
Sbjct: 721 SAAADKIPGLLGVFQKLIASKA 742
Score = 336 bits (861), Expect(2) = 0.0
Identities = 166/174 (95%), Positives = 166/174 (95%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQDNVIKV 294
MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYP EKSQDNVIKV
Sbjct: 1 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNVIKV 60
Query: 295 CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR 474
CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR
Sbjct: 61 CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR 120
Query: 475 EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHEFKSNELWTEIK 636
EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRY HEFKSNELWTEIK
Sbjct: 121 EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYRHEFKSNELWTEIK 174
Score = 55.1 bits (131), Expect = 2e-07
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +1
Query: 2353 FYLSNSIIEHMPPESVDQYRKQNLILLFQ 2439
FYL NSIIEHMPPESVDQYRKQ ILLFQ
Sbjct: 748 FYLLNSIIEHMPPESVDQYRKQIFILLFQ 776
>ref|XP_003360086.1| PREDICTED: exportin-2-like [Sus scrofa].
Length = 166
Score = 221 bits (562), Expect = 2e-57
Identities = 108/118 (91%), Positives = 108/118 (91%)
Frame = +3
Query: 816 METWMNNFHTLLTLDNKLLQTDDXXXXXXXXXXKSQICDNAALYAQKYDEEFQRYLPRFV 995
METWMNNFHTLLTLDNKLLQTDD KSQICDNAALYAQKYDEEFQRYLPRFV
Sbjct: 1 METWMNNFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFV 60
Query: 996 TAIWNLLVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNM 1169
TAIWNLLVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNM
Sbjct: 61 TAIWNLLVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNM 118
>ref|XP_003134044.2| PREDICTED: importin-11-like [Sus scrofa].
Length = 297
Score = 53.1 bits (126), Expect = 7e-07
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 1/162 (0%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQN-YPXXXXXXXEKSQDNVIK 291
M+L+ A+ L + L + D + +PAE+ L+ E Y S D ++
Sbjct: 1 MDLNSASTVVL-QVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHSLDINVR 59
Query: 292 VCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIG 471
A + FKN I R WR V P+ + E ++ ++A ++ QI Q++ I+ +
Sbjct: 60 WLAVLYFKNGIDRYWRRVA--PHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVA 117
Query: 472 REDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYH 597
R D P++WP+L+ ++ + + LR +L YH
Sbjct: 118 RLDCPRQWPELIPTLIESVK------VQDDLRQHRALLTFYH 153
>ref|XP_003357166.1| PREDICTED: importin-7 [Sus scrofa].
Length = 1124
Score = 51.6 bits (122), Expect = 2e-06
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Frame = +1
Query: 277 DNVIKVCASVTFKNYIKRNWRIVEDEPNKIC-----EADRVAIKANIVHLMLSSPEQIQK 441
D ++ + KN I + W E P I E DR I+ NIV ++ SPE I+
Sbjct: 135 DLPVRQAGVIYLKNMITQYWPDREAAPGDISPYTIPEEDRHCIRENIVEAIIHSPELIRV 194
Query: 442 QLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
QL+ I I + D+P +W ++ ++ QS + G+L + L K Y ++
Sbjct: 195 QLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNYEYK 248
>ref|XP_003126448.2| PREDICTED: importin-8 isoform 1 [Sus scrofa].
Length = 1037
Score = 51.2 bits (121), Expect = 3e-06
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Frame = +1
Query: 133 NLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNY------PXXXXXXXEKSQDNVIKV 294
+L + + LK T+DP +R AE L NQ+Y P + ++
Sbjct: 2 DLNRIIQALKGTIDPK--LRIAAENEL-----NQSYKIINFAPSLLRIIVSDHVEFPVRQ 54
Query: 295 CASVTFKNYIKRNWRIVEDEPNK------ICEADRVAIKANIVHLMLSSPEQIQKQLSDA 456
A++ KN + + W E P + I E DR I+ NIV ++ SP+ ++ QL+
Sbjct: 55 AAAIYLKNMVTQYWPDREPPPGEAIFPFNIHENDRQQIRDNIVEGIIRSPDLVRVQLTMC 114
Query: 457 ISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
+ I + DFP WP ++ ++ QS G L + L K Y ++
Sbjct: 115 LRAIIKYDFPGHWPAVVDKIDYYLQSQSSGSWLGSLLCLYQLVKTYEYK 163
>ref|XP_003130653.2| PREDICTED: importin-9-like [Sus scrofa].
Length = 998
Score = 49.7 bits (117), Expect = 8e-06
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +1
Query: 286 IKVCASVTFKNYIKRNWRIVEDE--PNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAI 459
I+ ASV K Y++ +W ++ P + E ++ I+ + + S +++ ++ A+
Sbjct: 31 IRQLASVILKQYVETHWCAQSEKFRPPETTERAKIVIRELLPSGLRESISKVRSSVAYAV 90
Query: 460 SIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLR 567
S I D+P+ WP L ++ SGD + ++G +R
Sbjct: 91 SAIAHWDWPEAWPQLFNLLMEMLVSGDLNAVHGAMR 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,075,652
Number of extensions: 1088388
Number of successful extensions: 2618
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2615
Number of HSP's successfully gapped: 8
Length of query: 813
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 706
Effective length of database: 8,679,953
Effective search space: 6128046818
Effective search space used: 6128046818
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013772
(2439 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076054.1| exportin-2 [Mus musculus]. 986 0.0
Alignment gi|NP_852658.2| importin-7 [Mus musculus]. 62 2e-09
Alignment gi|NP_722469.1| importin-9 [Mus musculus]. 57 5e-08
Alignment gi|NP_001074582.1| importin-8 [Mus musculus]. 55 2e-07
Alignment gi|NP_083941.2| importin-11 [Mus musculus]. 50 8e-06
>ref|NP_076054.1| exportin-2 [Mus musculus].
Length = 971
Score = 986 bits (2549), Expect(2) = 0.0
Identities = 504/562 (89%), Positives = 510/562 (90%)
Frame = +3
Query: 654 ALPLTNLFKATIELCSTHANDAXXXXXXXXXXXXXXXXXXXXNFQDLPEFFEDNMETWMN 833
ALPLTNLFKATIELCSTHANDA NFQDLPEFFEDNMETWMN
Sbjct: 181 ALPLTNLFKATIELCSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMN 240
Query: 834 NFHTLLTLDNKLLQTDDXXXXXXXXXXKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL 1013
NFHTLLTLDNKLLQTDD KSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL
Sbjct: 241 NFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL 300
Query: 1014 LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMXXXXXXXX 1193
LVTTG+EVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNM
Sbjct: 301 LVTTGREVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEE 360
Query: 1194 XXXXNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP 1373
NSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP
Sbjct: 361 AFEDNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP 420
Query: 1374 SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL 1553
SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKS NVNEFPVL
Sbjct: 421 SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSNNVNEFPVL 480
Query: 1554 KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL 1733
KADGIKYIMIFRNQVPKEHLLVSIPLLI+HL+AESIVVHTYAAHALERLFTMRG NN TL
Sbjct: 481 KADGIKYIMIFRNQVPKEHLLVSIPLLISHLEAESIVVHTYAAHALERLFTMRGSNNTTL 540
Query: 1734 FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ 1913
FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ
Sbjct: 541 FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ 600
Query: 1914 KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI 2093
KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI
Sbjct: 601 KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI 660
Query: 2094 PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLSPAFLERGSXIHS 2273
PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRL AFLERGS +
Sbjct: 661 PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLLQAFLERGSSTIA 720
Query: 2274 SAAADKIPGFVXVFQKLIASKA 2339
+AAADKIPG + VFQKLIASKA
Sbjct: 721 TAAADKIPGLLGVFQKLIASKA 742
Score = 334 bits (856), Expect(2) = 0.0
Identities = 165/174 (94%), Positives = 165/174 (94%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQDNVIKV 294
MELSDANLQTLTEYLKKTLDPDP IRRPAEKFLESVEGNQNYP EKSQDNVIKV
Sbjct: 1 MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNVIKV 60
Query: 295 CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR 474
CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR
Sbjct: 61 CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR 120
Query: 475 EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHEFKSNELWTEIK 636
EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRY HEFKSNELWTEIK
Sbjct: 121 EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYRHEFKSNELWTEIK 174
Score = 55.1 bits (131), Expect = 3e-07
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +1
Query: 2353 FYLSNSIIEHMPPESVDQYRKQNLILLFQ 2439
FYL NSIIEHMPPESVDQYRKQ ILLFQ
Sbjct: 748 FYLLNSIIEHMPPESVDQYRKQIFILLFQ 776
>ref|NP_852658.2| importin-7 [Mus musculus].
Length = 1038
Score = 62.0 bits (149), Expect = 2e-09
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +1
Query: 142 TLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQ-DNVIKVCASVTFKN 318
T+ E L+ T+DP +R AE+ L + N+ Q D ++ + KN
Sbjct: 5 TIIEALRGTMDP--ALREAAERQLNEAHKSLNFVSTLLQITMSEQLDLPVRQAGVIYLKN 62
Query: 319 YIKRNWRIVEDEPNKIC-----EADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDF 483
I + W E P I E DR I+ NIV ++ SPE I+ QL+ I I + D+
Sbjct: 63 MITQYWPDREATPGDIAPYTIPEEDRHCIRENIVEAIIHSPELIRVQLTTCIHHIIKHDY 122
Query: 484 PQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
P +W ++ ++ QS + G+L + L K Y ++
Sbjct: 123 PSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNYEYK 162
>ref|NP_722469.1| importin-9 [Mus musculus].
Length = 1040
Score = 57.4 bits (137), Expect = 5e-08
Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Frame = +1
Query: 103 GSMAMELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQDN 282
G +A L +A + TLT L P +R AE+ ++ +E + + Q
Sbjct: 15 GPVAQGLKEALVDTLTGILS----PVQEVRAAAEEQIKVLEVTEEFGVHLAELTVDPQGA 70
Query: 283 V-IKVCASVTFKNYIKRNWRIVEDE--PNKICEADRVAIKANIVHLMLSSPEQIQKQLSD 453
+ I+ ASV K Y++ +W ++ P + E ++ I+ + + + S +++ ++
Sbjct: 71 LAIRQLASVILKQYVETHWCAQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAY 130
Query: 454 AISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLR 567
A+S I D+P+ WP L ++ SGD + ++G +R
Sbjct: 131 AVSAIAHWDWPEAWPQLFNLLMEMLVSGDLNAVHGAMR 168
>ref|NP_001074582.1| importin-8 [Mus musculus].
Length = 1010
Score = 55.5 bits (132), Expect = 2e-07
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Frame = +1
Query: 133 NLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNY------PXXXXXXXEKSQDNVIKV 294
+L + + LK T+DP +R AE E NQ+Y P + ++
Sbjct: 2 DLNRIIQALKGTIDPK--LRIAAE-----TELNQSYKIINFAPSLLRIIVSDHVEFPVRQ 54
Query: 295 CASVTFKNYIKRNWRIVEDEPNKIC------EADRVAIKANIVHLMLSSPEQIQKQLSDA 456
A++ KN + + W E P ++ E DR I+ NIV ++ SP+ ++ QL+
Sbjct: 55 AAAIYLKNMVTQYWPDREPPPGEVIFPFNIHENDRQQIRDNIVEGIIRSPDLVRVQLTMC 114
Query: 457 ISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
+ +I R DFP WP ++ ++ QS + G L + L K Y ++
Sbjct: 115 LRVIIRHDFPGHWPAVVDKIDYYLQSPNSGSWLGSLLCLYQLVKTYEYK 163
>ref|NP_083941.2| importin-11 [Mus musculus].
Length = 975
Score = 50.1 bits (118), Expect = 8e-06
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 1/162 (0%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQN-YPXXXXXXXEKSQDNVIK 291
M+L+ A+ L + L + D + +PAE+ L+ E Y + D ++
Sbjct: 1 MDLNSASSVVL-QVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVR 59
Query: 292 VCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIG 471
A + FK+ I R WR V P+ + E ++ ++A ++ QI Q++ I+ +
Sbjct: 60 WLAVLYFKHGIDRYWRRVA--PHALSEEEKSTLRAGLITNFNEPINQIATQIAVLIAKVA 117
Query: 472 REDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYH 597
R D P++WP+L+ +V + + LR +L YH
Sbjct: 118 RLDCPRQWPELIPTLVESVK------VQDDLRQHRALLTFYH 153
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 67,962,788
Number of extensions: 1532612
Number of successful extensions: 3771
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3766
Number of HSP's successfully gapped: 7
Length of query: 813
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 703
Effective length of database: 12,313,599
Effective search space: 8656460097
Effective search space used: 8656460097
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013772
(2439 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001307.2| exportin-2 [Homo sapiens]. 999 0.0
Alignment gi|NP_006382.1| importin-7 [Homo sapiens]. 62 2e-09
Alignment gi|NP_060555.2| importin-9 [Homo sapiens]. 57 6e-08
Alignment gi|NP_006381.2| importin-8 isoform 1 [Homo sapiens]. 52 2e-06
Alignment gi|NP_001128251.1| importin-11 isoform 1 [Homo sapiens]. 52 3e-06
Alignment gi|NP_057422.3| importin-11 isoform 2 [Homo sapiens]. 51 6e-06
>ref|NP_001307.2| exportin-2 [Homo sapiens].
Length = 971
Score = 999 bits (2582), Expect(2) = 0.0
Identities = 511/562 (90%), Positives = 513/562 (91%)
Frame = +3
Query: 654 ALPLTNLFKATIELCSTHANDAXXXXXXXXXXXXXXXXXXXXNFQDLPEFFEDNMETWMN 833
ALPLTNLFKATIELCSTHANDA NFQDLPEFFEDNMETWMN
Sbjct: 181 ALPLTNLFKATIELCSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMN 240
Query: 834 NFHTLLTLDNKLLQTDDXXXXXXXXXXKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL 1013
NFHTLLTLDNKLLQTDD KSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL
Sbjct: 241 NFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNL 300
Query: 1014 LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMXXXXXXXX 1193
LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNM
Sbjct: 301 LVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEE 360
Query: 1194 XXXXNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP 1373
NSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP
Sbjct: 361 AFEDNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP 420
Query: 1374 SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL 1553
SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL
Sbjct: 421 SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVL 480
Query: 1554 KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL 1733
KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL
Sbjct: 481 KADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATL 540
Query: 1734 FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ 1913
FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ
Sbjct: 541 FTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQ 600
Query: 1914 KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI 2093
KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI
Sbjct: 601 KLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFI 660
Query: 2094 PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLSPAFLERGSXIHS 2273
PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRL AFLERGS +
Sbjct: 661 PYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLLQAFLERGSNTIA 720
Query: 2274 SAAADKIPGFVXVFQKLIASKA 2339
SAAADKIPG + VFQKLIASKA
Sbjct: 721 SAAADKIPGLLGVFQKLIASKA 742
Score = 334 bits (856), Expect(2) = 0.0
Identities = 165/174 (94%), Positives = 165/174 (94%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQDNVIKV 294
MELSDANLQTLTEYLKKTLDPDP IRRPAEKFLESVEGNQNYP EKSQDNVIKV
Sbjct: 1 MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNVIKV 60
Query: 295 CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR 474
CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR
Sbjct: 61 CASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGR 120
Query: 475 EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHEFKSNELWTEIK 636
EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRY HEFKSNELWTEIK
Sbjct: 121 EDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYRHEFKSNELWTEIK 174
Score = 55.1 bits (131), Expect = 3e-07
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +1
Query: 2353 FYLSNSIIEHMPPESVDQYRKQNLILLFQ 2439
FYL NSIIEHMPPESVDQYRKQ ILLFQ
Sbjct: 748 FYLLNSIIEHMPPESVDQYRKQIFILLFQ 776
>ref|NP_006382.1| importin-7 [Homo sapiens].
Length = 1038
Score = 62.0 bits (149), Expect = 2e-09
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +1
Query: 142 TLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQ-DNVIKVCASVTFKN 318
T+ E L+ T+DP +R AE+ L + N+ Q D ++ + KN
Sbjct: 5 TIIEALRGTMDP--ALREAAERQLNEAHKSLNFVSTLLQITMSEQLDLPVRQAGVIYLKN 62
Query: 319 YIKRNWRIVEDEPNKIC-----EADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDF 483
I + W E P I E DR I+ NIV ++ SPE I+ QL+ I I + D+
Sbjct: 63 MITQYWPDRETAPGDISPYTIPEEDRHCIRENIVEAIIHSPELIRVQLTTCIHHIIKHDY 122
Query: 484 PQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
P +W ++ ++ QS + G+L + L K Y ++
Sbjct: 123 PSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNYEYK 162
>ref|NP_060555.2| importin-9 [Homo sapiens].
Length = 1041
Score = 57.4 bits (137), Expect = 6e-08
Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Frame = +1
Query: 103 GSMAMELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNYPXXXXXXXEKSQDN 282
G +A L +A + TLT L P +R AE+ ++ +E + + Q
Sbjct: 15 GPVAQGLKEALVDTLTGILS----PVQEVRAAAEEQIKVLEVTEEFGVHLAELTVDPQGA 70
Query: 283 V-IKVCASVTFKNYIKRNWRIVEDE--PNKICEADRVAIKANIVHLMLSSPEQIQKQLSD 453
+ I+ ASV K Y++ +W ++ P + E ++ I+ + + + S +++ ++
Sbjct: 71 LAIRQLASVILKQYVETHWCAQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAY 130
Query: 454 AISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLR 567
A+S I D+P+ WP L ++ SGD + ++G +R
Sbjct: 131 AVSAIAHWDWPEAWPQLFNLLMEMLVSGDLNAVHGAMR 168
>ref|NP_006381.2| importin-8 isoform 1 [Homo sapiens].
Length = 1037
Score = 52.4 bits (124), Expect = 2e-06
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Frame = +1
Query: 133 NLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQNY------PXXXXXXXEKSQDNVIKV 294
+L + + LK T+DP +R AE L NQ+Y P + ++
Sbjct: 2 DLNRIIQALKGTIDPK--LRIAAENEL-----NQSYKIINFAPSLLRIIVSDHVEFPVRQ 54
Query: 295 CASVTFKNYIKRNWRIVEDEPNK------ICEADRVAIKANIVHLMLSSPEQIQKQLSDA 456
A++ KN + + W E P + I E DR I+ NIV ++ SP+ ++ QL+
Sbjct: 55 AAAIYLKNMVTQYWPDREPPPGEAIFPFNIHENDRQQIRDNIVEGIIRSPDLVRVQLTMC 114
Query: 457 ISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYHHE 603
+ I + DFP WP ++ ++ QS G L + L K Y ++
Sbjct: 115 LRAIIKHDFPGHWPGVVDKIDYYLQSQSSASWLGSLLCLYQLVKTYEYK 163
>ref|NP_001128251.1| importin-11 isoform 1 [Homo sapiens].
Length = 1015
Score = 51.6 bits (122), Expect = 3e-06
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 109 MAMELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQN-YPXXXXXXXEKSQDNV 285
++M+L+ A+ L + L + D + +PAE+ L+ E Y + D
Sbjct: 39 VSMDLNSASTVVL-QVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDIN 97
Query: 286 IKVCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISI 465
++ A + FK+ I R WR V P+ + E ++ ++A ++ QI Q++ I+
Sbjct: 98 VRWLAVLYFKHGIDRYWRRVA--PHALSEEEKTTLRAGLITNFNEPINQIATQIAVLIAK 155
Query: 466 IGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYH 597
+ R D P++WP+L+ ++ + + LR +L YH
Sbjct: 156 VARLDCPRQWPELIPTLIESVK------VQDDLRQHRALLTFYH 193
>ref|NP_057422.3| importin-11 isoform 2 [Homo sapiens].
Length = 975
Score = 50.8 bits (120), Expect = 6e-06
Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 1/162 (0%)
Frame = +1
Query: 115 MELSDANLQTLTEYLKKTLDPDPTIRRPAEKFLESVEGNQN-YPXXXXXXXEKSQDNVIK 291
M+L+ A+ L + L + D + +PAE+ L+ E Y + D ++
Sbjct: 1 MDLNSASTVVL-QVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVR 59
Query: 292 VCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIG 471
A + FK+ I R WR V P+ + E ++ ++A ++ QI Q++ I+ +
Sbjct: 60 WLAVLYFKHGIDRYWRRVA--PHALSEEEKTTLRAGLITNFNEPINQIATQIAVLIAKVA 117
Query: 472 REDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYH 597
R D P++WP+L+ ++ + + LR +L YH
Sbjct: 118 RLDCPRQWPELIPTLIESVK------VQDDLRQHRALLTFYH 153
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 79,002,642
Number of extensions: 1771695
Number of successful extensions: 4390
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4386
Number of HSP's successfully gapped: 8
Length of query: 813
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 702
Effective length of database: 14,638,160
Effective search space: 10275988320
Effective search space used: 10275988320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013772
(2439 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 333 3e-88
>Sscrofa_Chr17
|| Length = 69701581
Score = 333 bits (168), Expect = 3e-88
Identities = 205/213 (96%), Gaps = 4/213 (1%)
Strand = Plus / Plus
Query: 2084 agaatttattccgtatgtctttcaagtgatgtctttgcttctggaaacacacaaaaatga 2143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57250534 agaatttattccgtatgtctttcaagtgatgtctttgcttctggaaacacacaaaaatga 57250593
Query: 2144 catcccatcttcctatatggccttatttcctcatctccttcagccagtgctttgggaaag 2203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57250594 catcccatcttcctatatggccttatttcctcatctccttcagccagtgctttgggaaag 57250653
Query: 2204 aacaggaaatattcctgctctagtgaggctttctcc-agcattcttagaacgaggttcan 2262
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 57250654 aacaggaaatattcctgctctagtgaggc-ttctccaagcattcttagaacgaggttcaa 57250712
Query: 2263 nnatacatagc-agtgctgcagctgacaaaatc 2294
| | ||||| |||||||||||||||||||||
Sbjct: 57250713 ataca-atagcaagtgctgcagctgacaaaatc 57250744
Score = 333 bits (168), Expect = 3e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 882 gatgaagaagaagcaggcttattggaactcttaaaatcccagatttgtgataatgccgca 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57290424 gatgaagaagaagcaggcttattggaactcttaaaatcccagatttgtgataatgccgca 57290365
Query: 942 ctctatgcacaaaaatatgatgaagagtttcaacggtacctgcctcgttttgtcacagcc 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57290364 ctctatgcacaaaaatatgatgaagagtttcaacggtacctgcctcgttttgtcacagcc 57290305
Query: 1002 atctggaatttactagttacaacaggtcaagaggttaaatatgacttg 1049
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57290304 atctggaatttactagttacaacaggtcaagaggttaaatatgacttg 57290257
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 1933 agaacccaagcaaacctcactttaatcactatatgtttgaagcaatatgtttatccataa 1992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57250246 agaacccaagcaaacctcactttaatcactatatgtttgaagcaatatgtttatccataa 57250305
Query: 1993 gaataacttgcaaggctaaccctgctgctgttgtaaatttcgaggaggctttgtttctgg 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57250306 gaataacttgcaaggctaaccctgctgctgttgtaaatttcgaggaggctttgtttctgg 57250365
Query: 2053 tgtttactgaaattttacaaaatgatgtacaag 2085
|||||||||||||||||||||||||||||||||
Sbjct: 57250366 tgtttactgaaattttacaaaatgatgtacaag 57250398
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 197 cagctgagaagtttcttgaatctgtagaaggaaatcagaattatccactattgctgttaa 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57109041 cagctgagaagtttcttgaatctgtagaaggaaatcagaattatccactattgctgttaa 57109100
Query: 257 cattactggagaagtcccaggataatgttatcaaagtgtgtgcttcagtaacattcaaga 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57109101 cattactggagaagtcccaggataatgttatcaaagtgtgtgcttcagtaacattcaaga 57109160
Query: 317 actatattaaaaggaactggagaattgt 344
||||||||||||||||||||||||||||
Sbjct: 57109161 actatattaaaaggaactggagaattgt 57109188
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 197 cagctgagaagtttcttgaatctgtagaaggaaatcagaattatccactattgctgttaa 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57301938 cagctgagaagtttcttgaatctgtagaaggaaatcagaattatccactattgctgttaa 57301879
Query: 257 cattactggagaagtcccaggataatgttatcaaagtgtgtgcttcagtaacattcaaga 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57301878 cattactggagaagtcccaggataatgttatcaaagtgtgtgcttcagtaacattcaaga 57301819
Query: 317 actatattaaaaggaactggagaattgt 344
||||||||||||||||||||||||||||
Sbjct: 57301818 actatattaaaaggaactggagaattgt 57301791
Score = 285 bits (144), Expect = 6e-74
Identities = 147/148 (99%)
Strand = Plus / Minus
Query: 443 agttaagtgatgccattagcattattggcagagaagatttccctcagaaatggcctgact 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57298942 agttaagtgatgccattagcattattggcagagaagatttccctcagaaatggcctgact 57298883
Query: 503 tgttgacagaaatggtgaatcgctttcagagtggagatttccatgttattaacggagtcc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57298882 tgttgacagaaatggtgaatcgctttcagagtggagatttccatgttattaacggagtcc 57298823
Query: 563 tccgtacagcacactccttgtttaaaag 590
|||||||||||||||| |||||||||||
Sbjct: 57298822 tccgtacagcacactctttgtttaaaag 57298795
Score = 272 bits (137), Expect = 8e-70
Identities = 140/141 (99%)
Strand = Plus / Plus
Query: 1592 tcaggtaccaaaagagcatcttttagtttctattcctctgttgattaatcatcttcaagc 1651
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 57244558 tcaggtaccaaaagagcatcttttagtctctattcctctgttgattaatcatcttcaagc 57244617
Query: 1652 tgaaagtattgttgttcatacttacgctgcacatgctcttgagagactgtttactatgag 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57244618 tgaaagtattgttgttcatacttacgctgcacatgctcttgagagactgtttactatgag 57244677
Query: 1712 agggcctaacaacgccactct 1732
|||||||||||||||||||||
Sbjct: 57244678 agggcctaacaacgccactct 57244698
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 1049 gttggtaagtaatgcaattcagtttctggcttcggtttgtgagagacctcactataagaa 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57290147 gttggtaagtaatgcaattcagtttctggcttcggtttgtgagagacctcactataagaa 57290088
Query: 1109 tctatttgaggaccagaacacgctgacaagtatctgtgaaaaggttattgtgcctaacat 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57290087 tctatttgaggaccagaacacgctgacaagtatctgtgaaaaggttattgtgcctaacat 57290028
Query: 1169 ggaatttagag 1179
|||||||||||
Sbjct: 57290027 ggaatttagag 57290017
Score = 222 bits (112), Expect = 7e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 678 aaggctactattgaactctgcagcacccatgcaaatgatgcctctgccctgaggattctt 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57295590 aaggctactattgaactctgcagcacccatgcaaatgatgcctctgccctgaggattctt 57295531
Query: 738 ttttcttccctgattctgatatcaaaactgttttacagtttaaactttcagg 789
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57295530 ttttcttccctgattctgatatcaaaactgttttacagtttaaactttcagg 57295479
Score = 206 bits (104), Expect = 4e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1733 ctttacagctgcagaaatcgcaccgtttgttgagattctgctaacaaaccttttcaaagc 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57246222 ctttacagctgcagaaatcgcaccgtttgttgagattctgctaacaaaccttttcaaagc 57246281
Query: 1793 tctcacacttcctggctcttcagaaaatgaatatattatgaaag 1836
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57246282 tctcacacttcctggctcttcagaaaatgaatatattatgaaag 57246325
Score = 200 bits (101), Expect = 3e-48
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 ttttgccggggtttgaatgtgaggtggagcggcagtaggagtgggtagtgctggctgccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57095203 ttttgccggggtttgaatgtgaggtggagcggcagtaggagtgggtagtgctggctgccg 57095262
Query: 61 tccgcggctgagagtcccttctccgttcccgtatccccacgaggt 105
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 57095263 tccgcggctgagattcccttctccgttcccgtatccccacgaggt 57095307
Score = 198 bits (100), Expect = 1e-47
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1835 agctatcatgagaagtttttcccttctacaagaagccataatcccctacatccctactct 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57247830 agctatcatgagaagtttttcccttctacaagaagccataatcccctacatccctactct 57247889
Query: 1895 catcacacagcttacacagaagctattagctgttagtaag 1934
||||||||||||||||||||||||||||||||||||||||
Sbjct: 57247890 catcacacagcttacacagaagctattagctgttagtaag 57247929
Score = 196 bits (99), Expect = 4e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 784 ttcaggatctccctgaattttttgaagataatatggaaacttggatgaataattttcata 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57292639 ttcaggatctccctgaattttttgaagataatatggaaacttggatgaataattttcata 57292580
Query: 844 ccctcttgacattagataataagcttctacaaactgacg 882
|||||||||||||||||||||||||||||||||||||||
Sbjct: 57292579 ccctcttgacattagataataagcttctacaaactgacg 57292541
Score = 194 bits (98), Expect = 2e-46
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 102 aggttctatggcaatggagctcagcgatgcaaatttgcaaacactaacagaatatttaaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57105851 aggttctatggcaatggagctcagcgatgcaaatttgcaaacactaacagaatatttaaa 57105910
Query: 162 gaaaacccttgatcctgatcctacaatcagacgtccag 199
||||||||||||||||||||||||||||||||||||||
Sbjct: 57105911 gaaaacccttgatcctgatcctacaatcagacgtccag 57105948
Score = 178 bits (90), Expect = 9e-42
Identities = 99/102 (97%)
Strand = Plus / Minus
Query: 343 gttgaagacgaaccgaacaaaatttgtgaagctgatcgagtggccattaaagccaacatc 402
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 57299121 gttgaagatgaaccgaacaaaatttgtgaagctgaccgagtggccattaaagccaacatt 57299062
Query: 403 gtgcacttgatgcttagcagcccggagcaaattcagaagcag 444
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57299061 gtgcacttgatgcttagcagcccggagcaaattcagaagcag 57299020
Score = 163 bits (82), Expect = 6e-37
Identities = 92/94 (97%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 589 agataccaccatgaatttaagtcaaacgagttatggactgaaattaaacttgttttggat 648
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57298480 agataccgccatgaatttaagtcaaacgagttatggactgaaattaaacttgttttggat 57298421
Query: 649 gcc-ttgctttgcctttgactaatctgtttaagg 681
||| ||||||||||||||||||||||||||||||
Sbjct: 57298420 gcctttgctttgcctttgactaatctgtttaagg 57298387
Score = 131 bits (66), Expect = 2e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1533 gtgaatgaatttcctgtccttaaagctgatggtatcaaatacattatgatttttaggaat 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57235568 gtgaatgaatttcctgtccttaaagctgatggtatcaaatacattatgatttttaggaat 57235627
Query: 1593 caggta 1598
||||||
Sbjct: 57235628 caggta 57235633
Score = 111 bits (56), Expect = 2e-21
Identities = 89/98 (90%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 2295 cctgggtttgtangtgtctttcagaagctgattgcatccaaag-caatgaccaccnagg- 2352
|||||||| || |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 57251145 cctgggttgttaggtgtctttcagaagctgattgcatccaaagccaatgaccaccaaggt 57251204
Query: 2353 ttttatctttctaacagtataatagagcacatgcctcc 2390
||||||||| ||||||||||||||||||||||||||
Sbjct: 57251205 ttttatcttctaaacagtataatagagcacatgcctcc 57251242
Score = 73.8 bits (37), Expect = 4e-10
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 2391 tgagtcagttgaccagtacaggaagcaaaatctcattctgctattccaa 2439
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 57251342 tgagtcagttgaccagtacaggaagcaaatcttcattctgctattccaa 57251390
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 81,870,083
Number of extensions: 491
Number of successful extensions: 491
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 19
Length of query: 2439
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2417
Effective length of database: 2,808,408,574
Effective search space: 6787923523358
Effective search space used: 6787923523358
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)