Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013775
(1168 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852849.1| PREDICTED: similar to UMP-CMP kinase (Cytidylat... 342 5e-94
Alignment gi|NP_001124519.1| adenylate kinase isoenzyme 1 [Canis lupus fa... 159 5e-39
Alignment gi|XP_854522.1| PREDICTED: similar to adenylate kinase 5 isofor... 124 1e-28
Alignment gi|XP_547325.2| PREDICTED: similar to adenylate kinase 5 isofor... 123 3e-28
Alignment gi|XP_864020.1| PREDICTED: similar to adenylate kinase 2 isofor... 89 8e-18
Alignment gi|XP_535321.2| PREDICTED: similar to Adenylate kinase isoenzym... 89 8e-18
Alignment gi|XP_546674.2| PREDICTED: similar to Adenylate kinase isoenzym... 79 6e-15
Alignment gi|XP_537864.2| PREDICTED: similar to adenylate kinase 3 [Canis... 77 3e-14
Alignment gi|XP_853049.1| PREDICTED: similar to adenylate kinase 3 [Canis... 75 2e-13
Alignment gi|XP_851083.1| PREDICTED: similar to adenylate kinase 3 [Canis... 70 5e-12
>ref|XP_852849.1| PREDICTED: similar to UMP-CMP kinase (Cytidylate kinase)
(Deoxycytidylate kinase) (Cytidine monophosphate kinase)
(Uridine monophosphate/cytidine monophosphate kinase)
(UMP/CMP kinase) (UMP/CMPK) (Uridine monophosphate
kinase) [Canis familiaris].
Length = 196
Score = 342 bits (876), Expect = 5e-94
Identities = 169/171 (98%), Positives = 170/171 (99%)
Frame = +3
Query: 321 KYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQ 500
KYGYTHLSAGELLRDERKNP SQYGELIEKYIKDGKIVPVEITISLL+REMDQTMAANAQ
Sbjct: 26 KYGYTHLSAGELLRDERKNPASQYGELIEKYIKDGKIVPVEITISLLKREMDQTMAANAQ 85
Query: 501 KNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNR 680
KNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNR
Sbjct: 86 KNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNR 145
Query: 681 ESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG 833
ESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG
Sbjct: 146 ESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG 196
>ref|NP_001124519.1| adenylate kinase isoenzyme 1 [Canis lupus familiaris].
Length = 210
Score = 159 bits (402), Expect = 5e-39
Identities = 80/196 (40%), Positives = 130/196 (66%), Gaps = 1/196 (0%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
+L + K++FV+GGPG+GKGTQC +IV+KYGYTHLS G+LLR E + ++ G+++ + ++
Sbjct: 20 KLKKTKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSAR-GKMLSEIME 78
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNK-FLIDGFPRNQDNLQGWNKTMDGKADVSFV 596
G++VP+E + +LR M A +K FLIDG+PR + + + + + +
Sbjct: 79 KGQLVPLETVLDMLR----DAMVAKVDTSKGFLIDGYPREVQQGEEFERRI---GQPTLL 131
Query: 597 LFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDA 776
L+ D E +R L+RG++SGR DDN E+++KR++TY ++T+P+I YE+ G V+K++A
Sbjct: 132 LYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNA 191
Query: 777 SKSVDEVFDEVVKIFD 824
SVD VF +V D
Sbjct: 192 EGSVDNVFSQVCTHLD 207
>ref|XP_854522.1| PREDICTED: similar to adenylate kinase 5 isoform 1 [Canis
familiaris].
Length = 298
Score = 124 bits (312), Expect = 1e-28
Identities = 63/202 (31%), Positives = 109/202 (53%)
Frame = +3
Query: 219 PLFLCPHRLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGE 398
P+ H L P ++FV+GGPG GKGTQC + KYG+ H+ G+LLR E + +Q G
Sbjct: 101 PVAALTHILKSPLIIFVMGGPGCGKGTQCKNMATKYGFRHVGLGQLLRQEARR-STQRGR 159
Query: 399 LIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGK 578
I + G +VP I + L+ TM ++ + FLIDGFPR + + + +
Sbjct: 160 KIYDIMLQGLLVPTGIILDLI----SSTMLSHPESRGFLIDGFPRGLKQAKEFERLVGRA 215
Query: 579 ADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGK 758
D+ V+ FDC+ + + R L RG+ R+DD ++ +R++TY +P++ Y++
Sbjct: 216 PDI--VIVFDCSMDTMVRRVLHRGRVEHRADDCESAIRQRLETYYMLCEPVLTFYQQKNL 273
Query: 759 VKKIDASKSVDEVFDEVVKIFD 824
+ I A ++ + +F + + +
Sbjct: 274 LCNILAEEAPENIFAKCCSVVE 295
>ref|XP_547325.2| PREDICTED: similar to adenylate kinase 5 isoform 1 [Canis
familiaris].
Length = 561
Score = 123 bits (309), Expect = 3e-28
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 1/195 (0%)
Frame = +3
Query: 249 RPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDE-RKNPDSQYGELIEKYIKDG 425
RPK++ V+GGPG+GKGTQ +I E+YG+ ++S GELLR + ++ LI K I G
Sbjct: 131 RPKIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTG 190
Query: 426 KIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFF 605
++ P E TI+ E+ Q + + +IDGFPR+ + D V+F
Sbjct: 191 ELAPQETTIT----EIKQKLMQIPDEEGIVIDGFPRDVAQALSFE---DQICTPDLVVFL 243
Query: 606 DCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKS 785
C N+ ER L+R + GR DDN ++ ++R+ + Q+ P++ ++E G + DA +
Sbjct: 244 ACANQRLKERLLKRAEQQGRPDDNLKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRD 303
Query: 786 VDEVFDEVVKIFDKE 830
DEVF ++ D +
Sbjct: 304 EDEVFYDISMAVDSK 318
Score = 121 bits (304), Expect = 1e-27
Identities = 68/194 (35%), Positives = 115/194 (59%)
Frame = +3
Query: 243 LMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKD 422
L + K++F++GGPG+GKGTQC ++VEKYG+THLS GELLR+E + +S+ +LI +
Sbjct: 373 LRKCKIIFMIGGPGSGKGTQCEKLVEKYGFTHLSTGELLRNELSS-ESERSKLIRDIMDR 431
Query: 423 GKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 602
G VP I + LL+ M A+ + FLIDG+P+ + + + + D V+
Sbjct: 432 GDPVPSGIILELLKEAMG---ASLSDTKGFLIDGYPQEVKQGEEFGRRI---GDPHLVIC 485
Query: 603 FDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASK 782
DC+ + R L+R + S +D ++ KR++TY +++ P+I YE ++ K++A
Sbjct: 486 MDCSADTMTNRLLQRSQGSPSVEDT-TTIAKRLETYYRASIPVIAYYETKTQLHKVNAEG 544
Query: 783 SVDEVFDEVVKIFD 824
+ +EVF ++ D
Sbjct: 545 TPEEVFLQLCTAID 558
>ref|XP_864020.1| PREDICTED: similar to adenylate kinase 2 isoform b isoform 2 [Canis
familiaris].
Length = 234
Score = 89.0 bits (219), Expect = 8e-18
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PGAGKGTQ ++ E + HL+ G++LR S+ G+ ++ + GK+V E+
Sbjct: 22 LLGPPGAGKGTQAPKLAENFCVCHLATGDMLR-AMVASGSELGKKLKATMDAGKLVSDEM 80
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEI 623
+ L+ + ++ KN FL+DGFPR + + M+ K + V+ F + +
Sbjct: 81 VVELIEKNLETPQC----KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 136
Query: 624 CIERCLER------GKS---------------------SGRSDDNRESLEKRIQTYLQST 722
I R R G+S RSDDN ++L+ R++ Y T
Sbjct: 137 LIRRITGRLIHPLSGRSYHEEFNPPKEPMKDDITGEPLVRRSDDNEKALKIRLEAYHTQT 196
Query: 723 KPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDK 827
P++D Y + G IDA+++ D VF ++ F K
Sbjct: 197 TPLVDYYRKRGIHSVIDATQTPDVVFASILAAFSK 231
>ref|XP_535321.2| PREDICTED: similar to Adenylate kinase isoenzyme 2, mitochondrial
(ATP-AMP transphosphorylase) isoform 1 [Canis
familiaris].
Length = 241
Score = 89.0 bits (219), Expect = 8e-18
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PGAGKGTQ ++ E + HL+ G++LR S+ G+ ++ + GK+V E+
Sbjct: 22 LLGPPGAGKGTQAPKLAENFCVCHLATGDMLR-AMVASGSELGKKLKATMDAGKLVSDEM 80
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEI 623
+ L+ + ++ KN FL+DGFPR + + M+ K + V+ F + +
Sbjct: 81 VVELIEKNLETPQC----KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 136
Query: 624 CIERCLER------GKS---------------------SGRSDDNRESLEKRIQTYLQST 722
I R R G+S RSDDN ++L+ R++ Y T
Sbjct: 137 LIRRITGRLIHPLSGRSYHEEFNPPKEPMKDDITGEPLVRRSDDNEKALKIRLEAYHTQT 196
Query: 723 KPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDK 827
P++D Y + G IDA+++ D VF ++ F K
Sbjct: 197 TPLVDYYRKRGIHSVIDATQTPDVVFASILAAFSK 231
>ref|XP_546674.2| PREDICTED: similar to Adenylate kinase isoenzyme 4, mitochondrial
(ATP-AMP transphosphorylase) [Canis familiaris].
Length = 223
Score = 79.3 bits (194), Expect = 6e-15
Identities = 53/213 (24%), Positives = 101/213 (47%), Gaps = 25/213 (11%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PG+GKGT C RI + +G HLS+G LR E +++ G++ ++YI+ G +VP +
Sbjct: 10 ILGPPGSGKGTVCQRIAQSFGLQHLSSGHFLR-ENIRANTEVGDMAKQYIEKGLLVPDHV 68
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 626
L+ E++ N + +L+DGFPR + +K + ++ + F+ +
Sbjct: 69 ITRLMMSELE-----NRRLQHWLLDGFPRTLVQAEALDKICELDLVITLNIPFETLKDRL 123
Query: 627 IERCLERGKSSGR-------------------------SDDNRESLEKRIQTYLQSTKPI 731
R + SGR DD E++ R++ Y KP+
Sbjct: 124 SRRWIH--PPSGRVYNLDFNPPHVHGIDDITGEPLVQQEDDKPEAVAARLRQYKDVAKPV 181
Query: 732 IDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKE 830
I+LY+ G + + +++ ++++ V +F +
Sbjct: 182 IELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 213
>ref|XP_537864.2| PREDICTED: similar to adenylate kinase 3 [Canis familiaris].
Length = 258
Score = 77.0 bits (188), Expect = 3e-14
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 27/209 (12%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
RL+R +LG PG+GKGT +RI + + HLS+G+LLRD+ ++ G L + +I
Sbjct: 37 RLLR---AVILGAPGSGKGTVSSRITKHFALKHLSSGDLLRDDMLR-GTEIGVLAKTFID 92
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVL 599
GK++P E+ L E+ N + +L+DGFPR + +DG V+
Sbjct: 93 QGKLIPDEVMTRLTLHEL-----KNLTQYSWLLDGFPRTLPQAE----ALDGAYQTDTVI 143
Query: 600 FFDCNNEICIERCLER--GKSSG-------------------------RSDDNRESLEKR 698
+ E+ +R R +SG R DD E++ KR
Sbjct: 144 NLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKAVGIDDLTGEPLIQRDDDQPETVVKR 203
Query: 699 IQTYLQSTKPIIDLYEEMGKVKKIDASKS 785
++ Y T P+++ Y + G ++ +++
Sbjct: 204 LKAYEVQTHPVLEYYRKKGVLETFSGTET 232
>ref|XP_853049.1| PREDICTED: similar to adenylate kinase 3 [Canis familiaris].
Length = 2078
Score = 74.7 bits (182), Expect = 2e-13
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 27/209 (12%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
RL+R ++G PG+GKGT +RI + + HLS+G+LLRD ++ G L + +I
Sbjct: 6 RLLR---AVIMGAPGSGKGTVSSRITKHFALKHLSSGDLLRDNMLR-GTEIGVLAKTFID 61
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVL 599
GK++P + L E+ N + +L+DGFPR + +DG + V+
Sbjct: 62 QGKLIPDGVMTRLALHEL-----KNLTQYSWLLDGFPRTLPQAE----ALDGAYQIDTVI 112
Query: 600 FFDCNNEICIERCLER--GKSSG-------------------------RSDDNRESLEKR 698
+ E+ +R R +SG R DD E++ KR
Sbjct: 113 NLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKAVGIDDLTGEPLIQRDDDKPETVVKR 172
Query: 699 IQTYLQSTKPIIDLYEEMGKVKKIDASKS 785
++ Y T+P+++ Y + G ++ +++
Sbjct: 173 LKAYEVQTQPVLEYYRKKGVLETFSGTET 201
>ref|XP_851083.1| PREDICTED: similar to adenylate kinase 3 [Canis familiaris].
Length = 288
Score = 69.7 bits (169), Expect = 5e-12
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 27/209 (12%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
RL+R ++G PG+GKGT +RI + HLS+G+LLRD+ ++ G L + +I
Sbjct: 67 RLLR---AVIMGAPGSGKGTVSSRITRHFALKHLSSGDLLRDDMLR-GTEIGVLAKTFID 122
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVL 599
GK+ E+ L E+ N + +L+DGFPR + + G + +
Sbjct: 123 QGKLTQDEVMTRLALHEL-----KNLTQYSWLLDGFPRTLPQAE----ALHGAYQIDTAI 173
Query: 600 FFDCNNEICIERCLER--GKSSG-------------------------RSDDNRESLEKR 698
+ E+ +R R +SG R DD E++ KR
Sbjct: 174 NLNVPFEVIKQRLTARWIHPASGRVHNIEFNPPKAVGIDDLTGEPLIQRDDDQPETVVKR 233
Query: 699 IQTYLQSTKPIIDLYEEMGKVKKIDASKS 785
++ Y T+P+++ Y + G ++ +++
Sbjct: 234 LKAYEVQTQPVLEYYRKKGVLESFSGTET 262
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,235,245
Number of extensions: 739564
Number of successful extensions: 3097
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3072
Number of HSP's successfully gapped: 13
Length of query: 389
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 284
Effective length of database: 15,374,224
Effective search space: 4366279616
Effective search space used: 4366279616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013775
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013775
(1168 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039509.1| UMP-CMP kinase [Bos taurus]. 446 e-125
Alignment gi|NP_001013600.1| adenylate kinase isoenzyme 1 [Bos taurus]. 160 2e-39
Alignment gi|NP_001077226.1| adenylate kinase isoenzyme 5 [Bos taurus]. 131 1e-30
Alignment gi|NP_776314.1| adenylate kinase 2, mitochondrial [Bos taurus]. 87 3e-17
Alignment gi|NP_001071401.1| adenylate kinase isoenzyme 4, mitochondrial ... 80 3e-15
Alignment gi|XP_002688958.1| PREDICTED: adenylate kinase 1-like [Bos taur... 78 2e-14
Alignment gi|XP_001789260.1| PREDICTED: adenylate kinase 1-like [Bos taur... 76 5e-14
Alignment gi|NP_776662.1| GTP:AMP phosphotransferase, mitochondrial [Bos ... 75 8e-14
Alignment gi|XP_002695630.1| PREDICTED: adenylate kinase isoenzyme 4, mit... 75 1e-13
Alignment gi|XP_588793.1| PREDICTED: adenylate kinase isoenzyme 4, mitoch... 75 1e-13
>ref|NP_001039509.1| UMP-CMP kinase [Bos taurus].
Length = 228
Score = 446 bits (1146), Expect = e-125
Identities = 220/228 (96%), Positives = 224/228 (98%)
Frame = +3
Query: 150 MLSRCGCRLLHVLGLSFPLLTRRPLFLCPHRLMRPKVVFVLGGPGAGKGTQCARIVEKYG 329
ML+RCG RLLHVLGLSFPLLT RPLFL PHR M+P+VVFVLGGPGAGKGTQCARIVEKYG
Sbjct: 1 MLNRCGRRLLHVLGLSFPLLTGRPLFLFPHRFMKPQVVFVLGGPGAGKGTQCARIVEKYG 60
Query: 330 YTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNK 509
YTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNK
Sbjct: 61 YTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNK 120
Query: 510 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL 689
FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
Sbjct: 121 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL 180
Query: 690 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG 833
EKRIQTYLQSTKPIIDLYEEMGKV+KIDASKSVDEVFDEVVKIFDKEG
Sbjct: 181 EKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSVDEVFDEVVKIFDKEG 228
>ref|NP_001013600.1| adenylate kinase isoenzyme 1 [Bos taurus].
Length = 194
Score = 160 bits (405), Expect = 2e-39
Identities = 81/196 (41%), Positives = 131/196 (66%), Gaps = 1/196 (0%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
+L + K++FV+GGPG+GKGTQC +IV+KYGYTHLS G+LLR E + ++ G+++ + ++
Sbjct: 4 KLKKTKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSAR-GKMLSEIME 62
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNK-FLIDGFPRNQDNLQGWNKTMDGKADVSFV 596
G++VP+E + +LR M A +K FLIDG+PR + + + + A + +
Sbjct: 63 KGQLVPLETVLDMLR----DAMVAKVDTSKGFLIDGYPREVQQGEEFERRI---AQPTLL 115
Query: 597 LFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDA 776
L+ D E +R L+RG++SGR DDN E+++KR++TY ++T+P+I YE+ G V+K++A
Sbjct: 116 LYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNA 175
Query: 777 SKSVDEVFDEVVKIFD 824
SVD VF +V D
Sbjct: 176 EGSVDNVFSQVCTHLD 191
>ref|NP_001077226.1| adenylate kinase isoenzyme 5 [Bos taurus].
Length = 562
Score = 131 bits (329), Expect = 1e-30
Identities = 68/194 (35%), Positives = 120/194 (61%)
Frame = +3
Query: 243 LMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKD 422
L + K++F++GGPG+GKGTQC ++ EKYG+THLS ELL++E + +S +LI ++
Sbjct: 373 LKKCKIIFMIGGPGSGKGTQCGKLAEKYGFTHLSTDELLQNELSS-ESGRSKLIRDIMER 431
Query: 423 GKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 602
G++VP I + LL+ M +A+ + FLIDG+PR + + + + D V+
Sbjct: 432 GELVPSGIILELLKEAM---VASLSNTKGFLIDGYPREVKQGEEFGRRI---GDPHLVIC 485
Query: 603 FDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASK 782
DC+ + R L+R ++S ++DDN ++ KR++TY +++ P++ YE ++ KI+A
Sbjct: 486 MDCSADTMTNRLLQRSRNSPQADDNTTTIAKRLETYYRASIPVVAYYETKTQLHKINAEG 545
Query: 783 SVDEVFDEVVKIFD 824
+ +EVF ++ D
Sbjct: 546 TPEEVFLQLCTAID 559
Score = 123 bits (309), Expect = 3e-28
Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 1/195 (0%)
Frame = +3
Query: 249 RPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDS-QYGELIEKYIKDG 425
RPK++ V+GGPG+GKGTQ +I E+YG+ ++S GELLR + + S + LI K I G
Sbjct: 131 RPKIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTG 190
Query: 426 KIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFF 605
++ P E TI+ E+ Q + + +IDGFPR+ + D V+F
Sbjct: 191 ELAPQETTIT----EIKQKLMQMPDEVGIVIDGFPRDVAQALSFE---DQICTPDLVVFL 243
Query: 606 DCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKS 785
C N+ ER L+R + GR DDN ++ ++R+ + Q+ P++ ++E G + DA +
Sbjct: 244 ACTNQRLKERLLKRAEQQGRPDDNLKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRD 303
Query: 786 VDEVFDEVVKIFDKE 830
DEVF ++ D +
Sbjct: 304 EDEVFYDISMAVDSK 318
>ref|NP_776314.1| adenylate kinase 2, mitochondrial [Bos taurus].
Length = 234
Score = 87.0 bits (214), Expect = 3e-17
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 28/215 (13%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PGAGKGTQ ++ + + HL+ G++LR S+ G+ ++ + GK+V E+
Sbjct: 22 LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLR-AMVASGSELGKKLKATMDAGKLVSDEM 80
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEI 623
+ L+ + ++ KN FL+DGFPR + + M+ K + V+ F + +
Sbjct: 81 VLELIEKNLETPPC----KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 136
Query: 624 CIERCLER------GKS---------------------SGRSDDNRESLEKRIQTYLQST 722
I R R G+S RSDDN+++L+ R++ Y T
Sbjct: 137 LIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQT 196
Query: 723 KPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDK 827
P+++ Y + G IDAS++ D VF ++ F K
Sbjct: 197 TPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 231
>ref|NP_001071401.1| adenylate kinase isoenzyme 4, mitochondrial [Bos taurus].
Length = 223
Score = 80.5 bits (197), Expect = 3e-15
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 27/215 (12%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PG+GKGT C RI + +G HLS+G LR+ K +++ G++ ++YI+ G +VP +
Sbjct: 10 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK-ANTEVGDMAKQYIEKGLLVPDHV 68
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 626
L+ E++ N + +L+DGFPR + +D D+ V+ + E
Sbjct: 69 ITRLMLLELE-----NRRGEHWLLDGFPRTLVQAE----ALDRLCDLDLVITLNIPFETL 119
Query: 627 IERCLER--GKSSGR-------------------------SDDNRESLEKRIQTYLQSTK 725
+R R SGR DD E++ R++ Y K
Sbjct: 120 KDRLSRRWIHPPSGRVYNLDFNPPHVHGMDDVTGEPLVQQEDDKPEAVAARLRQYKDVAK 179
Query: 726 PIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKE 830
P+I+LY+ G + + +++ ++++ V +F +
Sbjct: 180 PVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 213
>ref|XP_002688958.1| PREDICTED: adenylate kinase 1-like [Bos taurus].
Length = 199
Score = 77.8 bits (190), Expect = 2e-14
Identities = 49/195 (25%), Positives = 92/195 (47%)
Frame = +3
Query: 213 RRPLFLCPHRLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQY 392
RRP+ H + P +VFV+GG G GKGTQC + KYG+ H+ L + +Q+
Sbjct: 9 RRPVGHHRHPQL-PLIVFVMGGSGCGKGTQCKYMATKYGFCHVG----LLQQEAQWGTQW 63
Query: 393 GELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD 572
G I + G + P + + ++ M + + FLID FP+ + N +
Sbjct: 64 GRKIHDLMLQGDLPPQGVILDVI----SICMLSCPESQGFLIDSFPQELRQAKELNAQVG 119
Query: 573 GKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEM 752
++ ++ F C+ ++R +G++ R+DD ++ + ++TY +P++ Y+
Sbjct: 120 WAPNI--IITFACSMVTMMQRAPSQGQAERRADDCEAAVRQHLETYYTLYEPVLTFYQRK 177
Query: 753 GKVKKIDASKSVDEV 797
+ + S V V
Sbjct: 178 SLLPNLRDSAPVQSV 192
>ref|XP_001789260.1| PREDICTED: adenylate kinase 1-like [Bos taurus].
Length = 300
Score = 76.3 bits (186), Expect = 5e-14
Identities = 48/193 (24%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Frame = +3
Query: 213 RRPLFLCPHRLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQY 392
RRP+ H + P +VFV+GG G GKGTQC + KYG+ H+ L + +Q+
Sbjct: 9 RRPVGHHRHPQL-PLIVFVMGGSGCGKGTQCKYMATKYGFCHVG----LLQQEAQWGTQW 63
Query: 393 GELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD 572
G I + G + P + + ++ M + + FLID FP+ + N +
Sbjct: 64 GRKIHDLMLQGDLPPQGVILDVI----SICMLSCPESQGFLIDSFPQELRQAKELNAQVG 119
Query: 573 GKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEE- 749
++ ++ F C+ ++R +G++ R+DD ++ + ++TY +P++ Y+
Sbjct: 120 WAPNI--IITFACSMVTMMQRAPSQGQAERRADDCEAAVRQHLETYYTLYEPVLTFYQRK 177
Query: 750 --MGKVKKIDASK 782
+ + KI++ +
Sbjct: 178 SLLPNLSKIESER 190
>ref|NP_776662.1| GTP:AMP phosphotransferase, mitochondrial [Bos taurus].
Length = 227
Score = 75.5 bits (184), Expect = 8e-14
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
++G PG+GKGT +RI + + HLS+G+LLRD ++ G L + +I GK++P ++
Sbjct: 12 IMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLR-GTEIGVLAKTFIDQGKLIPDDV 70
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 626
L+ E+ N + +L+DGFPR + ++ ++ + F+ +
Sbjct: 71 MTRLVLHEL-----KNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRL 125
Query: 627 IERCLERG------------KSSG-----------RSDDNRESLEKRIQTYLQSTKPIID 737
R + G K+ G R DD E++ KR++ Y T+P+++
Sbjct: 126 TARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLE 185
Query: 738 LYEEMGKVKKIDASKS 785
Y + G ++ +++
Sbjct: 186 YYRKKGVLETFSGTET 201
>ref|XP_002695630.1| PREDICTED: adenylate kinase isoenzyme 4, mitochondrial-like [Bos
taurus].
Length = 223
Score = 74.7 bits (182), Expect = 1e-13
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 27/215 (12%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
VLG PG+GKGT C RI + + HLS+G LR+ K +++ G++ ++YI+ G +VP
Sbjct: 10 VLGPPGSGKGTVCQRIAQNFSLQHLSSGHFLRENIK-ANTEVGDMAKQYIEKGLLVPDHG 68
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 626
L+ E++ N + +L+DGFPR + +D D+ V+ + E
Sbjct: 69 ITRLMLLELE-----NRRGEHWLLDGFPRTLVQAE----ALDRLCDLDLVITLNIAFETL 119
Query: 627 IERCLER--GKSSGR-------------------------SDDNRESLEKRIQTYLQSTK 725
+R R SGR DD E++ R++ Y +
Sbjct: 120 KDRLSRRWIHPPSGRVYNLDFNPPHVHGMDDVTGEPLVQQEDDKPEAVAARLRQYKDVAR 179
Query: 726 PIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKE 830
P+I+LY+ G + + +++ ++++ V +F +
Sbjct: 180 PVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 213
>ref|XP_588793.1| PREDICTED: adenylate kinase isoenzyme 4, mitochondrial-like [Bos
taurus].
Length = 223
Score = 74.7 bits (182), Expect = 1e-13
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 27/215 (12%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
VLG PG+GKGT C RI + + HLS+G LR+ K +++ G++ ++YI+ G +VP
Sbjct: 10 VLGPPGSGKGTVCQRIAQNFSLQHLSSGHFLRENIK-ANTEVGDMAKQYIEKGLLVPDHG 68
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 626
L+ E++ N + +L+DGFPR + +D D+ V+ + E
Sbjct: 69 ITRLMLLELE-----NRRGEHWLLDGFPRTLVQAE----ALDRLCDLDLVITLNIAFETL 119
Query: 627 IERCLER--GKSSGR-------------------------SDDNRESLEKRIQTYLQSTK 725
+R R SGR DD E++ R++ Y +
Sbjct: 120 KDRLSRRWIHPPSGRVYNLDFNPPHVHGMDDVTGEPLVQQEDDKPEAVAARLRQYKDVAR 179
Query: 726 PIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKE 830
P+I+LY+ G + + +++ ++++ V +F +
Sbjct: 180 PVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 213
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,004,926
Number of extensions: 779691
Number of successful extensions: 2742
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2719
Number of HSP's successfully gapped: 13
Length of query: 389
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,240,222
Effective search space: 4058463270
Effective search space used: 4058463270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013775
(1168 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362177.1| PREDICTED: UMP-CMP kinase-like [Sus scrofa]. 355 2e-98
Alignment gi|XP_003128059.2| PREDICTED: UMP-CMP kinase-like [Sus scrofa]. 346 2e-95
Alignment gi|XP_003122225.2| PREDICTED: adenylate kinase isoenzyme 1 isof... 153 2e-37
Alignment gi|XP_003127969.2| PREDICTED: adenylate kinase isoenzyme 5 [Sus... 116 2e-26
Alignment gi|XP_003356474.1| PREDICTED: adenylate kinase isoenzyme 5-like... 107 1e-23
Alignment gi|XP_001924714.2| PREDICTED: GTP:AMP phosphotransferase, mitoc... 74 2e-13
Alignment gi|XP_003361623.1| PREDICTED: adenylate kinase 2, mitochondrial... 70 2e-12
Alignment gi|NP_001038062.1| adenylate kinase isoenzyme 4, mitochondrial ... 69 4e-12
Alignment gi|XP_003361624.1| PREDICTED: adenylate kinase 2, mitochondrial... 69 5e-12
Alignment gi|XP_003353744.1| PREDICTED: adenylate kinase 8 [Sus scrofa]. 54 2e-07
>ref|XP_003362177.1| PREDICTED: UMP-CMP kinase-like [Sus scrofa].
Length = 305
Score = 355 bits (912), Expect = 2e-98
Identities = 178/185 (96%), Positives = 179/185 (96%)
Frame = +3
Query: 279 PGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISL 458
PG K Q A IV+KYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISL
Sbjct: 121 PGIFKEEQEASIVDKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISL 180
Query: 459 LRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERC 638
LRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERC
Sbjct: 181 LRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERC 240
Query: 639 LERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKI 818
LERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKI
Sbjct: 241 LERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKI 300
Query: 819 FDKEG 833
FDKEG
Sbjct: 301 FDKEG 305
>ref|XP_003128059.2| PREDICTED: UMP-CMP kinase-like [Sus scrofa].
Length = 222
Score = 346 bits (887), Expect = 2e-95
Identities = 171/171 (100%), Positives = 171/171 (100%)
Frame = +3
Query: 321 KYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQ 500
KYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQ
Sbjct: 52 KYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQ 111
Query: 501 KNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNR 680
KNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNR
Sbjct: 112 KNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNR 171
Query: 681 ESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG 833
ESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG
Sbjct: 172 ESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG 222
>ref|XP_003122225.2| PREDICTED: adenylate kinase isoenzyme 1 isoform 1 [Sus scrofa].
Length = 199
Score = 153 bits (387), Expect = 2e-37
Identities = 81/201 (40%), Positives = 130/201 (64%), Gaps = 6/201 (2%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
+L + K++FV+GGPG+GKGTQC +IV+KYGYTHLS G+LLR E + S G+++ + ++
Sbjct: 4 KLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAE-VSSGSARGKMLSEIME 62
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNK-FLIDGFPRNQDNLQGWNKTMDGKADVSFV 596
G++VP+E + +LR M A +K FLIDG+PR + + + + + +
Sbjct: 63 KGQLVPLETVLDMLR----DAMVAKVDTSKGFLIDGYPREVKQGEEFERKI---GQPTLL 115
Query: 597 LFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDA 776
L+ D E +R L+RG++SGR DDN E+++KR++TY ++T+P+I YE+ G V+K+ A
Sbjct: 116 LYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVRA 175
Query: 777 SK-----SVDEVFDEVVKIFD 824
+ SVD+VF +V D
Sbjct: 176 QRVNAEGSVDDVFSQVCTHLD 196
>ref|XP_003127969.2| PREDICTED: adenylate kinase isoenzyme 5 [Sus scrofa].
Length = 319
Score = 116 bits (291), Expect = 2e-26
Identities = 62/176 (35%), Positives = 109/176 (61%)
Frame = +3
Query: 243 LMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKD 422
L + K++F++GGPG+GKGTQC ++ EKYG THLS +LLR+E + +S+ +LI ++
Sbjct: 108 LRKCKIIFMIGGPGSGKGTQCEKLGEKYGLTHLSTDKLLRNELSS-ESERSKLIRDVMER 166
Query: 423 GKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 602
G++VP I + LL+ M +A+ + FLIDG+PR + + + + D V+
Sbjct: 167 GELVPSGIILELLKEAM---VASLSNTKGFLIDGYPREVKQGEEFGRRI---GDPHLVIC 220
Query: 603 FDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKI 770
DC+ + R L+R +SS +D++ ++ KR++TY +++ P++ YE ++ KI
Sbjct: 221 MDCSADTMTNRLLQRRQSSPCADEDTTTIAKRLETYYRASIPVVAYYETKTQLHKI 276
>ref|XP_003356474.1| PREDICTED: adenylate kinase isoenzyme 5-like, partial [Sus scrofa].
Length = 297
Score = 107 bits (268), Expect = 1e-23
Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 1/172 (0%)
Frame = +3
Query: 249 RPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDE-RKNPDSQYGELIEKYIKDG 425
RPK++ V+GGPG+GKGTQ +I E+YG+ ++S GELLR + ++ LI K I G
Sbjct: 131 RPKIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTG 190
Query: 426 KIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFF 605
++ P E TI+ E+ Q + + +IDGFPR+ + D V+F
Sbjct: 191 ELAPQETTIT----EIKQKLMQMPDEVGIVIDGFPRDVAQALSFE---DQICTPDLVVFL 243
Query: 606 DCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKV 761
C N+ ER +R + GR DDN ++ ++R+ + Q+ P++ ++E G +
Sbjct: 244 ACANQRLKERLQKRAEQQGRPDDNLKATQRRLMNFKQNAAPLVKYFQEKGLI 295
>ref|XP_001924714.2| PREDICTED: GTP:AMP phosphotransferase, mitochondrial isoform 1 [Sus
scrofa].
Length = 227
Score = 73.9 bits (180), Expect = 2e-13
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
++G PG+GKGT +RI + + HLS+G+LLRD ++ G L + +I GK++P ++
Sbjct: 12 IMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLR-GTEIGVLAKTFIDQGKLIPDDV 70
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 626
L+ E+ N + +L+DGFPR + ++ ++ + F+ +
Sbjct: 71 MTRLVLHEL-----KNLTQYSWLLDGFPRTLLQAEALDRVYQLDTVINLNVPFEVIKQRL 125
Query: 627 IERCLERG------------KSSG-----------RSDDNRESLEKRIQTYLQSTKPIID 737
R + G K+ G R DD E++ KR++ Y T+P+++
Sbjct: 126 TARWIHPGSGRVYNIEFNPPKTVGIDDITGEPLVQREDDKPETVVKRLKAYEAQTEPVLE 185
Query: 738 LYEEMGKVKKIDASKS 785
Y + G ++ +++
Sbjct: 186 YYRKKGVLETFSGTET 201
>ref|XP_003361623.1| PREDICTED: adenylate kinase 2, mitochondrial-like isoform 1 [Sus
scrofa].
Length = 228
Score = 70.5 bits (171), Expect = 2e-12
Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Frame = +3
Query: 300 QCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQ 479
Q R+ E + HL+ G++LR + S+ G+ ++ + GK+V E+ + L+ + ++
Sbjct: 27 QAPRLAENFCVCHLATGDMLRAMVAS-GSELGKKLKATMDAGKLVSDEMVVELIEKNLET 85
Query: 480 TMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEICIERCLER--- 647
KN FL+DGFPR + + M+ K + V+ F + + I R R
Sbjct: 86 PPC----KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDALLIRRITGRLIH 141
Query: 648 ---GKS---------------------SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMG 755
G+S RSDDN ++L+ R++ Y T P+++ Y + G
Sbjct: 142 PKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLEAYHTQTTPLVEYYSKRG 201
Query: 756 KVKKIDASKSVDEVFDEVVKIFDK 827
IDAS++ D VF ++ F K
Sbjct: 202 IHSAIDASQTPDVVFASILAAFSK 225
>ref|NP_001038062.1| adenylate kinase isoenzyme 4, mitochondrial [Sus scrofa].
Length = 178
Score = 69.3 bits (168), Expect = 4e-12
Identities = 36/102 (35%), Positives = 59/102 (57%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PG+GKGT C RI + G HLS+G LR+ K +++ G++ ++YI+ G +VP +
Sbjct: 10 ILGPPGSGKGTVCQRIAQNLGLQHLSSGHFLRENIK-ANTEVGDMAKQYIEKGLLVPDHL 68
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD 572
L+ E++ N + +L+DGFPR + +K D
Sbjct: 69 ITRLMLSELE-----NRRGQHWLLDGFPRTLVQAEALDKICD 105
>ref|XP_003361624.1| PREDICTED: adenylate kinase 2, mitochondrial-like isoform 2 [Sus
scrofa].
Length = 227
Score = 68.9 bits (167), Expect = 5e-12
Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 22/198 (11%)
Frame = +3
Query: 300 QCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQ 479
Q R+ E + HL+ G++LR + S+ G+ ++ + GK+V E+ + L+ + ++
Sbjct: 27 QAPRLAENFCVCHLATGDMLRAMVAS-GSELGKKLKATMDAGKLVSDEMVVELIEKNLET 85
Query: 480 TMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEICIERCLERGKS 656
KN FL+DGFPR + + M+ K + V+ F + + I + G+S
Sbjct: 86 PPC----KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDALLIHP--KSGRS 139
Query: 657 ---------------------SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKID 773
RSDDN ++L+ R++ Y T P+++ Y + G ID
Sbjct: 140 YHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLEAYHTQTTPLVEYYSKRGIHSAID 199
Query: 774 ASKSVDEVFDEVVKIFDK 827
AS++ D VF ++ F K
Sbjct: 200 ASQTPDVVFASILAAFSK 217
>ref|XP_003353744.1| PREDICTED: adenylate kinase 8 [Sus scrofa].
Length = 498
Score = 53.5 bits (127), Expect = 2e-07
Identities = 31/94 (32%), Positives = 53/94 (56%)
Frame = +3
Query: 261 VFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPV 440
V +LG G+GK Q A + +KYG ++ G+LL+ E S+YG++I + + VP
Sbjct: 290 VLLLGPMGSGKSLQAALLAQKYGLVNVCCGQLLK-EAVADKSKYGKVILSFFEKEIAVPD 348
Query: 441 EITISLLRREMDQTMAANAQKNKFLIDGFPRNQD 542
I + +L R +DQ + + +++ GFPR+ D
Sbjct: 349 SIIMKVLGRRLDQ---QDCVERGWVLHGFPRDLD 379
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,259,350
Number of extensions: 599739
Number of successful extensions: 1811
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1794
Number of HSP's successfully gapped: 10
Length of query: 389
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 288
Effective length of database: 8,829,335
Effective search space: 2542848480
Effective search space used: 2542848480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013775
(1168 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079923.3| UMP-CMP kinase [Mus musculus]. 402 e-112
Alignment gi|NP_001185721.1| adenylate kinase isoenzyme 1 isoform 2 [Mus ... 158 7e-39
Alignment gi|NP_001185720.1| adenylate kinase isoenzyme 1 isoform 2 [Mus ... 158 7e-39
Alignment gi|NP_001185719.1| adenylate kinase isoenzyme 1 isoform 2 [Mus ... 158 7e-39
Alignment gi|NP_067490.1| adenylate kinase isoenzyme 1 isoform 1 [Mus mus... 158 7e-39
Alignment gi|NP_001074746.1| adenylate kinase isoenzyme 5 [Mus musculus]. 132 5e-31
Alignment gi|NP_001029138.1| adenylate kinase 2, mitochondrial isoform a ... 89 9e-18
Alignment gi|NP_058591.2| adenylate kinase 2, mitochondrial isoform b [Mu... 89 9e-18
Alignment gi|NP_033777.1| adenylate kinase isoenzyme 4, mitochondrial [Mu... 87 2e-17
Alignment gi|NP_001171076.1| adenylate kinase isoenzyme 4, mitochondrial ... 87 2e-17
>ref|NP_079923.3| UMP-CMP kinase [Mus musculus].
Length = 227
Score = 402 bits (1034), Expect = e-112
Identities = 207/228 (90%), Positives = 211/228 (92%)
Frame = +3
Query: 150 MLSRCGCRLLHVLGLSFPLLTRRPLFLCPHRLMRPKVVFVLGGPGAGKGTQCARIVEKYG 329
MLS C L HVL S P LTR L L P LM+P VVFVLGGPGAGKGTQCARIVEKYG
Sbjct: 1 MLSSCRRLLPHVLVPSCPPLTRT-LRLFPLHLMKPLVVFVLGGPGAGKGTQCARIVEKYG 59
Query: 330 YTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNK 509
YTHLSAGELLRDERKNPDSQYGELIEKYIK+GKIVPVEITISLL+REMDQTMAANAQKNK
Sbjct: 60 YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNK 119
Query: 510 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL 689
FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
Sbjct: 120 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL 179
Query: 690 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG 833
EKRIQTYL+STKPIIDLYEEMGKVKKIDASKSVDEVF EVVKIFDKEG
Sbjct: 180 EKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVDEVFGEVVKIFDKEG 227
>ref|NP_001185721.1| adenylate kinase isoenzyme 1 isoform 2 [Mus musculus].
Length = 194
Score = 158 bits (400), Expect = 7e-39
Identities = 79/195 (40%), Positives = 127/195 (65%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
+L + K++FV+GGPG+GKGTQC +IV+KYGYTHLS G+LLR E + S+ G+ + ++
Sbjct: 4 KLKKAKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSS-GSERGKKLSAIME 62
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVL 599
G++VP++ + +LR D +A N FLIDG+PR + + + + + +L
Sbjct: 63 KGELVPLDTVLDMLR---DAMLAKVDSSNGFLIDGYPREVKQGEEFEQKI---GQPTLLL 116
Query: 600 FFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDAS 779
+ D E +R L+RG++SGR DDN E+++KR++TY +T+P+I Y++ G V+K++A
Sbjct: 117 YVDAGAETMTQRLLKRGETSGRVDDNEETIKKRLETYYNATEPVISFYDKRGIVRKVNAE 176
Query: 780 KSVDEVFDEVVKIFD 824
+VD VF EV D
Sbjct: 177 GTVDTVFSEVCTYLD 191
>ref|NP_001185720.1| adenylate kinase isoenzyme 1 isoform 2 [Mus musculus].
Length = 194
Score = 158 bits (400), Expect = 7e-39
Identities = 79/195 (40%), Positives = 127/195 (65%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
+L + K++FV+GGPG+GKGTQC +IV+KYGYTHLS G+LLR E + S+ G+ + ++
Sbjct: 4 KLKKAKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSS-GSERGKKLSAIME 62
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVL 599
G++VP++ + +LR D +A N FLIDG+PR + + + + + +L
Sbjct: 63 KGELVPLDTVLDMLR---DAMLAKVDSSNGFLIDGYPREVKQGEEFEQKI---GQPTLLL 116
Query: 600 FFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDAS 779
+ D E +R L+RG++SGR DDN E+++KR++TY +T+P+I Y++ G V+K++A
Sbjct: 117 YVDAGAETMTQRLLKRGETSGRVDDNEETIKKRLETYYNATEPVISFYDKRGIVRKVNAE 176
Query: 780 KSVDEVFDEVVKIFD 824
+VD VF EV D
Sbjct: 177 GTVDTVFSEVCTYLD 191
>ref|NP_001185719.1| adenylate kinase isoenzyme 1 isoform 2 [Mus musculus].
Length = 194
Score = 158 bits (400), Expect = 7e-39
Identities = 79/195 (40%), Positives = 127/195 (65%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
+L + K++FV+GGPG+GKGTQC +IV+KYGYTHLS G+LLR E + S+ G+ + ++
Sbjct: 4 KLKKAKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSS-GSERGKKLSAIME 62
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVL 599
G++VP++ + +LR D +A N FLIDG+PR + + + + + +L
Sbjct: 63 KGELVPLDTVLDMLR---DAMLAKVDSSNGFLIDGYPREVKQGEEFEQKI---GQPTLLL 116
Query: 600 FFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDAS 779
+ D E +R L+RG++SGR DDN E+++KR++TY +T+P+I Y++ G V+K++A
Sbjct: 117 YVDAGAETMTQRLLKRGETSGRVDDNEETIKKRLETYYNATEPVISFYDKRGIVRKVNAE 176
Query: 780 KSVDEVFDEVVKIFD 824
+VD VF EV D
Sbjct: 177 GTVDTVFSEVCTYLD 191
>ref|NP_067490.1| adenylate kinase isoenzyme 1 isoform 1 [Mus musculus].
Length = 210
Score = 158 bits (400), Expect = 7e-39
Identities = 79/195 (40%), Positives = 127/195 (65%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
+L + K++FV+GGPG+GKGTQC +IV+KYGYTHLS G+LLR E + S+ G+ + ++
Sbjct: 20 KLKKAKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSS-GSERGKKLSAIME 78
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVL 599
G++VP++ + +LR D +A N FLIDG+PR + + + + + +L
Sbjct: 79 KGELVPLDTVLDMLR---DAMLAKVDSSNGFLIDGYPREVKQGEEFEQKI---GQPTLLL 132
Query: 600 FFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDAS 779
+ D E +R L+RG++SGR DDN E+++KR++TY +T+P+I Y++ G V+K++A
Sbjct: 133 YVDAGAETMTQRLLKRGETSGRVDDNEETIKKRLETYYNATEPVISFYDKRGIVRKVNAE 192
Query: 780 KSVDEVFDEVVKIFD 824
+VD VF EV D
Sbjct: 193 GTVDTVFSEVCTYLD 207
>ref|NP_001074746.1| adenylate kinase isoenzyme 5 [Mus musculus].
Length = 562
Score = 132 bits (332), Expect = 5e-31
Identities = 67/194 (34%), Positives = 118/194 (60%)
Frame = +3
Query: 243 LMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKD 422
L + K++F++GGPG+GKGTQC ++ EKYG+THLS GELLR E + +S+ +LI ++
Sbjct: 373 LRKCKIIFLMGGPGSGKGTQCEKLAEKYGFTHLSTGELLRQELTS-ESERSKLIRDIMER 431
Query: 423 GKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 602
G +VP + + LL+ M +A+ FLIDG+PR + + + + D V+
Sbjct: 432 GDLVPSGVVLELLKEAM---VASLGNTKGFLIDGYPREVKQGEEFGRRI---GDPHLVIC 485
Query: 603 FDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASK 782
DC+ + R L+R +SS R +D +S+ KR++ Y +++ P++ YE +++K++A
Sbjct: 486 MDCSADTMTNRLLQRSQSSQRGEDGAKSIAKRLEAYHRASIPVVTYYERKTQLRKVNAEG 545
Query: 783 SVDEVFDEVVKIFD 824
+ ++VF ++ D
Sbjct: 546 TPEQVFLQLCTAID 559
Score = 119 bits (297), Expect = 6e-27
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 1/195 (0%)
Frame = +3
Query: 249 RPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDS-QYGELIEKYIKDG 425
RPK++ V+GGPG+GKGTQ +I E+YG+ ++S GELLR + + S + LI K I +G
Sbjct: 131 RPKIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSASSNRKWSLIAKIITNG 190
Query: 426 KIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFF 605
++ P E TI+ E+ Q + + +IDGFPR+ + D V+F
Sbjct: 191 ELAPQETTIT----EIKQKLMQIPDEEGIVIDGFPRDVAQALSFE---DQICTPDLVVFL 243
Query: 606 DCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKS 785
C N+ ER +R + GR DDN ++ ++R+ + Q+ P++ ++E G + DA +
Sbjct: 244 ACANQRLKERLQKRAEQQGRPDDNLKATQRRLVNFKQNAAPLVKYFQEKGLIVTFDADRD 303
Query: 786 VDEVFDEVVKIFDKE 830
D VF ++ D +
Sbjct: 304 EDAVFHDISVAVDSK 318
>ref|NP_001029138.1| adenylate kinase 2, mitochondrial isoform a [Mus musculus].
Length = 239
Score = 88.6 bits (218), Expect = 9e-18
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PGAGKGTQ ++ E + HL+ G++LR S+ G+ ++ + GK+V E+
Sbjct: 20 LLGPPGAGKGTQAPKLAENFCVCHLATGDMLR-AMVASGSELGKKLKATMDAGKLVSDEM 78
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEI 623
+ L+ + ++ KN FL+DGFPR + + M+ K + V+ F + +
Sbjct: 79 VVELIEKNLETPSC----KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIQDSL 134
Query: 624 CIERCLER------GKS---------------------SGRSDDNRESLEKRIQTYLQST 722
I R R G+S RSDDN ++L+ R++ Y T
Sbjct: 135 LIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKTRLEAYHTQT 194
Query: 723 KPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDK 827
P+++ Y + G IDAS++ D VF ++ F K
Sbjct: 195 TPLVEYYRKRGIHCAIDASQTPDIVFASILAAFSK 229
>ref|NP_058591.2| adenylate kinase 2, mitochondrial isoform b [Mus musculus].
Length = 232
Score = 88.6 bits (218), Expect = 9e-18
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PGAGKGTQ ++ E + HL+ G++LR S+ G+ ++ + GK+V E+
Sbjct: 20 LLGPPGAGKGTQAPKLAENFCVCHLATGDMLR-AMVASGSELGKKLKATMDAGKLVSDEM 78
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEI 623
+ L+ + ++ KN FL+DGFPR + + M+ K + V+ F + +
Sbjct: 79 VVELIEKNLETPSC----KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIQDSL 134
Query: 624 CIERCLER------GKS---------------------SGRSDDNRESLEKRIQTYLQST 722
I R R G+S RSDDN ++L+ R++ Y T
Sbjct: 135 LIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKTRLEAYHTQT 194
Query: 723 KPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDK 827
P+++ Y + G IDAS++ D VF ++ F K
Sbjct: 195 TPLVEYYRKRGIHCAIDASQTPDIVFASILAAFSK 229
>ref|NP_033777.1| adenylate kinase isoenzyme 4, mitochondrial [Mus musculus].
Length = 223
Score = 87.4 bits (215), Expect = 2e-17
Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 27/215 (12%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PG+GKGT C RI + +G HLS+G LLR+ K ++ G++ ++Y++ G +VP +
Sbjct: 10 ILGPPGSGKGTVCERIAQNFGLQHLSSGHLLRENLKT-GTEVGDVAKQYLEKGLLVPDHV 68
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 626
L+ E++ A + +L+DGFPR + +DG DV V+ + E
Sbjct: 69 ITRLMMSELETRSAQH-----WLLDGFPRTLVQAE----ALDGICDVDLVISLNIPFETL 119
Query: 627 IERCLER--GKSSGR-------------------------SDDNRESLEKRIQTYLQSTK 725
+R R SSGR DD E++ R++ Y + K
Sbjct: 120 KDRLSRRWIHPSSGRVYNLDFNPPQVQGIDDITGEPLVQQEDDKPEAVAARLRRYKDAAK 179
Query: 726 PIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKE 830
P+I+LY+ G + + +++ + ++ V +F +
Sbjct: 180 PVIELYKSRGVLHQFSGTET-NRIWPYVYTLFSNK 213
>ref|NP_001171076.1| adenylate kinase isoenzyme 4, mitochondrial [Mus musculus].
Length = 223
Score = 87.4 bits (215), Expect = 2e-17
Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 27/215 (12%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PG+GKGT C RI + +G HLS+G LLR+ K ++ G++ ++Y++ G +VP +
Sbjct: 10 ILGPPGSGKGTVCERIAQNFGLQHLSSGHLLRENLKT-GTEVGDVAKQYLEKGLLVPDHV 68
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 626
L+ E++ A + +L+DGFPR + +DG DV V+ + E
Sbjct: 69 ITRLMMSELETRSAQH-----WLLDGFPRTLVQAE----ALDGICDVDLVISLNIPFETL 119
Query: 627 IERCLER--GKSSGR-------------------------SDDNRESLEKRIQTYLQSTK 725
+R R SSGR DD E++ R++ Y + K
Sbjct: 120 KDRLSRRWIHPSSGRVYNLDFNPPQVQGIDDITGEPLVQQEDDKPEAVAARLRRYKDAAK 179
Query: 726 PIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKE 830
P+I+LY+ G + + +++ + ++ V +F +
Sbjct: 180 PVIELYKSRGVLHQFSGTET-NRIWPYVYTLFSNK 213
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,714,752
Number of extensions: 611478
Number of successful extensions: 2557
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2531
Number of HSP's successfully gapped: 15
Length of query: 389
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 286
Effective length of database: 12,523,851
Effective search space: 3581821386
Effective search space used: 3581821386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013775
(1168 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057392.1| UMP-CMP kinase isoform a [Homo sapiens]. 430 e-120
Alignment gi|NP_001129612.1| UMP-CMP kinase isoform b [Homo sapiens]. 313 3e-85
Alignment gi|NP_000467.1| adenylate kinase isoenzyme 1 [Homo sapiens]. 158 8e-39
Alignment gi|NP_777283.1| adenylate kinase isoenzyme 5 isoform 1 [Homo sa... 132 6e-31
Alignment gi|NP_036225.2| adenylate kinase isoenzyme 5 isoform 2 [Homo sa... 132 6e-31
Alignment gi|NP_001616.1| adenylate kinase 2, mitochondrial isoform a [Ho... 92 7e-19
Alignment gi|NP_037543.1| adenylate kinase 2, mitochondrial isoform b [Ho... 92 7e-19
Alignment gi|NP_001186128.1| adenylate kinase 2, mitochondrial isoform c ... 91 2e-18
Alignment gi|XP_003119578.1| PREDICTED: adenylate kinase isoenzyme 4, mit... 81 2e-15
Alignment gi|NP_001005353.1| adenylate kinase isoenzyme 4, mitochondrial ... 81 2e-15
>ref|NP_057392.1| UMP-CMP kinase isoform a [Homo sapiens].
Length = 228
Score = 430 bits (1105), Expect = e-120
Identities = 214/228 (93%), Positives = 219/228 (96%)
Frame = +3
Query: 150 MLSRCGCRLLHVLGLSFPLLTRRPLFLCPHRLMRPKVVFVLGGPGAGKGTQCARIVEKYG 329
MLSRC LLHVLGLSF L TRRP+ LC RLM+P VVFVLGGPGAGKGTQCARIVEKYG
Sbjct: 1 MLSRCRSGLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKYG 60
Query: 330 YTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNK 509
YTHLSAGELLRDERKNPDSQYGELIEKYIK+GKIVPVEITISLL+REMDQTMAANAQKNK
Sbjct: 61 YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNK 120
Query: 510 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL 689
FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
Sbjct: 121 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL 180
Query: 690 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG 833
EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVV+IFDKEG
Sbjct: 181 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG 228
>ref|NP_001129612.1| UMP-CMP kinase isoform b [Homo sapiens].
Length = 179
Score = 313 bits (801), Expect = 3e-85
Identities = 167/228 (73%), Positives = 170/228 (74%)
Frame = +3
Query: 150 MLSRCGCRLLHVLGLSFPLLTRRPLFLCPHRLMRPKVVFVLGGPGAGKGTQCARIVEKYG 329
MLSRC LLHVLGLSF L TRRP+ LC RLM+P VVFVLGGPGAGKGTQCARIVE
Sbjct: 1 MLSRCRSGLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVE--- 57
Query: 330 YTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNK 509
EMDQTMAANAQKNK
Sbjct: 58 ----------------------------------------------EMDQTMAANAQKNK 71
Query: 510 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL 689
FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL
Sbjct: 72 FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESL 131
Query: 690 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKEG 833
EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVV+IFDKEG
Sbjct: 132 EKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKEG 179
>ref|NP_000467.1| adenylate kinase isoenzyme 1 [Homo sapiens].
Length = 194
Score = 158 bits (400), Expect = 8e-39
Identities = 80/196 (40%), Positives = 129/196 (65%), Gaps = 1/196 (0%)
Frame = +3
Query: 240 RLMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK 419
+L + K++FV+GGPG+GKGTQC +IV+KYGYTHLS G+LLR E + ++ G+ + + ++
Sbjct: 4 KLKKTKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSAR-GKKLSEIME 62
Query: 420 DGKIVPVEITISLLRREMDQTMAANAQKNK-FLIDGFPRNQDNLQGWNKTMDGKADVSFV 596
G++VP+E + +LR M A +K FLIDG+PR + + + + + +
Sbjct: 63 KGQLVPLETVLDMLR----DAMVAKVNTSKGFLIDGYPREVQQGEEFERRI---GQPTLL 115
Query: 597 LFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDA 776
L+ D E +R L+RG++SGR DDN E+++KR++TY ++T+P+I YE+ G V+K++A
Sbjct: 116 LYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNA 175
Query: 777 SKSVDEVFDEVVKIFD 824
SVD VF +V D
Sbjct: 176 EGSVDSVFSQVCTHLD 191
>ref|NP_777283.1| adenylate kinase isoenzyme 5 isoform 1 [Homo sapiens].
Length = 562
Score = 132 bits (332), Expect = 6e-31
Identities = 70/194 (36%), Positives = 118/194 (60%)
Frame = +3
Query: 243 LMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKD 422
L + K++F++GGPG+GKGTQC ++VEKYG+THLS GELLR+E + +S+ +LI ++
Sbjct: 373 LRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELAS-ESERSKLIRDIMER 431
Query: 423 GKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 602
G +VP I + LL+ M +A+ FLIDG+PR + + + + D V+
Sbjct: 432 GDLVPSGIVLELLKEAM---VASLGDTRGFLIDGYPREVKQGEEFGRRI---GDPQLVIC 485
Query: 603 FDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASK 782
DC+ + R L+R +SS DD +++ KR++ Y +++ P+I YE ++ KI+A
Sbjct: 486 MDCSADTMTNRLLQRSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEG 545
Query: 783 SVDEVFDEVVKIFD 824
+ ++VF ++ D
Sbjct: 546 TPEDVFLQLCTAID 559
Score = 123 bits (308), Expect = 4e-28
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 1/195 (0%)
Frame = +3
Query: 249 RPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDE-RKNPDSQYGELIEKYIKDG 425
RPK++ V+GGPG+GKGTQ +I E+YG+ ++S GELLR + ++ LI K I G
Sbjct: 131 RPKIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTG 190
Query: 426 KIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFF 605
++ P E TI+ E+ Q + + +IDGFPR+ + D V+F
Sbjct: 191 ELAPQETTIT----EIKQKLMQIPDEEGIVIDGFPRDVAQALSFE---DQICTPDLVVFL 243
Query: 606 DCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKS 785
C N+ ER L+R + GR DDN ++ ++R+ + Q+ P++ ++E G + DA +
Sbjct: 244 ACANQRLKERLLKRAEQQGRPDDNVKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRD 303
Query: 786 VDEVFDEVVKIFDKE 830
DEVF ++ D +
Sbjct: 304 EDEVFYDISMAVDNK 318
>ref|NP_036225.2| adenylate kinase isoenzyme 5 isoform 2 [Homo sapiens].
Length = 536
Score = 132 bits (332), Expect = 6e-31
Identities = 70/194 (36%), Positives = 118/194 (60%)
Frame = +3
Query: 243 LMRPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKD 422
L + K++F++GGPG+GKGTQC ++VEKYG+THLS GELLR+E + +S+ +LI ++
Sbjct: 347 LRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELAS-ESERSKLIRDIMER 405
Query: 423 GKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 602
G +VP I + LL+ M +A+ FLIDG+PR + + + + D V+
Sbjct: 406 GDLVPSGIVLELLKEAM---VASLGDTRGFLIDGYPREVKQGEEFGRRI---GDPQLVIC 459
Query: 603 FDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASK 782
DC+ + R L+R +SS DD +++ KR++ Y +++ P+I YE ++ KI+A
Sbjct: 460 MDCSADTMTNRLLQRSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEG 519
Query: 783 SVDEVFDEVVKIFD 824
+ ++VF ++ D
Sbjct: 520 TPEDVFLQLCTAID 533
Score = 123 bits (308), Expect = 4e-28
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 1/195 (0%)
Frame = +3
Query: 249 RPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDE-RKNPDSQYGELIEKYIKDG 425
RPK++ V+GGPG+GKGTQ +I E+YG+ ++S GELLR + ++ LI K I G
Sbjct: 105 RPKIILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKKIHSTSSNRKWSLIAKIITTG 164
Query: 426 KIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFF 605
++ P E TI+ E+ Q + + +IDGFPR+ + D V+F
Sbjct: 165 ELAPQETTIT----EIKQKLMQIPDEEGIVIDGFPRDVAQALSFE---DQICTPDLVVFL 217
Query: 606 DCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKS 785
C N+ ER L+R + GR DDN ++ ++R+ + Q+ P++ ++E G + DA +
Sbjct: 218 ACANQRLKERLLKRAEQQGRPDDNVKATQRRLMNFKQNAAPLVKYFQEKGLIMTFDADRD 277
Query: 786 VDEVFDEVVKIFDKE 830
DEVF ++ D +
Sbjct: 278 EDEVFYDISMAVDNK 292
>ref|NP_001616.1| adenylate kinase 2, mitochondrial isoform a [Homo sapiens].
Length = 239
Score = 92.4 bits (228), Expect = 7e-19
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 28/215 (13%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PGAGKGTQ R+ E + HL+ G++LR S+ G+ ++ + GK+V E+
Sbjct: 20 LLGPPGAGKGTQAPRLAENFCVCHLATGDMLR-AMVASGSELGKKLKATMDAGKLVSDEM 78
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEI 623
+ L+ + ++ + KN FL+DGFPR + + M+ K + V+ F + +
Sbjct: 79 VVELIEKNLETPLC----KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 134
Query: 624 CIERCLER------GKS---------------------SGRSDDNRESLEKRIQTYLQST 722
I R R G+S RSDDN ++L+ R+Q Y T
Sbjct: 135 LIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQT 194
Query: 723 KPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDK 827
P+I+ Y + G IDAS++ D VF ++ F K
Sbjct: 195 TPLIEYYRKRGIHSAIDASQTPDVVFASILAAFSK 229
>ref|NP_037543.1| adenylate kinase 2, mitochondrial isoform b [Homo sapiens].
Length = 232
Score = 92.4 bits (228), Expect = 7e-19
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 28/215 (13%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PGAGKGTQ R+ E + HL+ G++LR S+ G+ ++ + GK+V E+
Sbjct: 20 LLGPPGAGKGTQAPRLAENFCVCHLATGDMLR-AMVASGSELGKKLKATMDAGKLVSDEM 78
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEI 623
+ L+ + ++ + KN FL+DGFPR + + M+ K + V+ F + +
Sbjct: 79 VVELIEKNLETPLC----KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 134
Query: 624 CIERCLER------GKS---------------------SGRSDDNRESLEKRIQTYLQST 722
I R R G+S RSDDN ++L+ R+Q Y T
Sbjct: 135 LIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQT 194
Query: 723 KPIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDK 827
P+I+ Y + G IDAS++ D VF ++ F K
Sbjct: 195 TPLIEYYRKRGIHSAIDASQTPDVVFASILAAFSK 229
>ref|NP_001186128.1| adenylate kinase 2, mitochondrial isoform c [Homo sapiens].
Length = 224
Score = 90.9 bits (224), Expect = 2e-18
Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 22/209 (10%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PGAGKGTQ R+ E + HL+ G++LR S+ G+ ++ + GK+V E+
Sbjct: 20 LLGPPGAGKGTQAPRLAENFCVCHLATGDMLR-AMVASGSELGKKLKATMDAGKLVSDEM 78
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD-GKADVSFVLFFDCNNEI 623
+ L+ + ++ + KN FL+DGFPR + + M+ K + V+ F + +
Sbjct: 79 VVELIEKNLETPLC----KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 134
Query: 624 CIERCLERGKS---------------------SGRSDDNRESLEKRIQTYLQSTKPIIDL 740
I + G+S RSDDN ++L+ R+Q Y T P+I+
Sbjct: 135 LIHP--KSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEY 192
Query: 741 YEEMGKVKKIDASKSVDEVFDEVVKIFDK 827
Y + G IDAS++ D VF ++ F K
Sbjct: 193 YRKRGIHSAIDASQTPDVVFASILAAFSK 221
>ref|XP_003119578.1| PREDICTED: adenylate kinase isoenzyme 4, mitochondrial-like [Homo
sapiens].
Length = 223
Score = 80.9 bits (198), Expect = 2e-15
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PG+GKGT C RI + +G HLS+G LR+ K ++ GE+ ++YI+ +VP +
Sbjct: 10 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK-ASTEVGEMAKQYIEKSLLVPDHV 68
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 626
L+ E++ N + +L+DGFPR G + +D +V V+ + E
Sbjct: 69 ITRLMMSELE-----NRRGQHWLLDGFPRT----LGQAEALDKICEVDLVISLNIPFETL 119
Query: 627 IERCLER--GKSSGR-------------------------SDDNRESLEKRIQTYLQSTK 725
+R R SGR DD E++ R++ Y K
Sbjct: 120 KDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAK 179
Query: 726 PIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKE 830
P+I+LY+ G + + +++ ++++ V +F +
Sbjct: 180 PVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 213
>ref|NP_001005353.1| adenylate kinase isoenzyme 4, mitochondrial isoform 5 [Homo
sapiens].
Length = 223
Score = 80.9 bits (198), Expect = 2e-15
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Frame = +3
Query: 267 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEI 446
+LG PG+GKGT C RI + +G HLS+G LR+ K ++ GE+ ++YI+ +VP +
Sbjct: 10 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK-ASTEVGEMAKQYIEKSLLVPDHV 68
Query: 447 TISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEIC 626
L+ E++ N + +L+DGFPR G + +D +V V+ + E
Sbjct: 69 ITRLMMSELE-----NRRGQHWLLDGFPRT----LGQAEALDKICEVDLVISLNIPFETL 119
Query: 627 IERCLER--GKSSGR-------------------------SDDNRESLEKRIQTYLQSTK 725
+R R SGR DD E++ R++ Y K
Sbjct: 120 KDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAK 179
Query: 726 PIIDLYEEMGKVKKIDASKSVDEVFDEVVKIFDKE 830
P+I+LY+ G + + +++ ++++ V +F +
Sbjct: 180 PVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 213
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,458,972
Number of extensions: 713991
Number of successful extensions: 2918
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2867
Number of HSP's successfully gapped: 19
Length of query: 389
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,868,908
Effective search space: 4237638780
Effective search space used: 4237638780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013775
(1168 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 579 e-162
Sscrofa_Chr06 507 e-141
gb|GL896394.2| Sus scrofa unplaced genomic scaffold ChrUScaf4278 400 e-109
gb|JH118874.1| Sus scrofa unplaced genomic scaffold ChrUScaf3074 165 7e-38
Sscrofa_Chr01 165 7e-38
>Sscrofa_Chr14
|| Length = 153851969
Score = 579 bits (292), Expect = e-162
Identities = 408/445 (91%), Gaps = 5/445 (1%)
Strand = Plus / Minus
Query: 498 cagaagaataaattcttaattgatgggtttccaagaaatcaagacaaccttcaaggttgg 557
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 146131081 cagaagaataaattcctaattgatgggtttccaagaaatcaagacaaccttcaaggctgg 146131022
Query: 558 aacaagaccatggatgggaaagctgatgtatctttcgttttgttttttgactgtaataat 617
||||||| |||||||| ||| ||| ||||||||||| || ||||||||||||||||||||
Sbjct: 146131021 aacaagatcatggatgagaaggctaatgtatctttctttctgttttttgactgtaataat 146130962
Query: 618 gagatctgtattgaacgatgtcttgagaggggaaagagtagtggtaggagtgatgacaac 677
|||||||||||||| | |||||||||||||||||||||||| || ||||||| ||||||
Sbjct: 146130961 gagatctgtattgacccatgtcttgagaggggaaagagtagcagtgggagtgacgacaac 146130902
Query: 678 agagagagcttggaaaagagaattcaaacctatcttcagtcaacaaagccaattattgac 737
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 146130901 aaagagagcttggaaaagagaattcaaacctatcttcagtcaacaaagccaattactgac 146130842
Query: 738 ttatatgaagaaatggggaaagtcaagaaaatagatgcttctaaatctgttgatgaagtt 797
|| |||||||| |||||| ||||||||||||| | ||||||| |||||||||| | |
Sbjct: 146130841 ttctatgaagacatgggggaagtcaagaaaatgggtgcttctcaatctgttgaag----t 146130786
Query: 798 tttgatgaagttgtgaagatttttgacaaagaaggctaactctatatctgaaagcatcct 857
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 146130785 tttgatgaagttgtgaagatttttgacaaagaaggctaactctgtatctgaaggcatcct 146130726
Query: 858 cgaaatcatgcttgaatattgctttgatagctgctatcacaatccctttttaaggcaatt 917
| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct: 146130725 tgcaatcatgcttgaatattgctttgatagctgctatcacaat-ccttttgaaggcactt 146130667
Query: 918 ttaatctttcgtaattacatctcaa 942
| ||||||| ||||||| |||||||
Sbjct: 146130666 tcaatcttttgtaattatatctcaa 146130642
Score = 404 bits (204), Expect = e-110
Identities = 358/408 (87%), Gaps = 6/408 (1%)
Strand = Plus / Minus
Query: 112 gctgtcagctccctcggcgtgccaccaagccgaggtgcatgctgagccgctgcggctgcc 171
||||||||||||||| || || |||||||||||||||||||||||| |||| |||||||
Sbjct: 146131750 gctgtcagctccctcagcatgagaccaagccgaggtgcatgctgagctgctgtggctgcc 146131691
Query: 172 ggctgctgcacgtcctaggccttagcttcccgctcctgacccgccggccgcttttcctct 231
|||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct: 146131690 ggctgctgcacgtcctaggccttagcttcctgctcctgacccgctggccacttttcctct 146131631
Query: 232 gtccgcaccgcctcatgaggccgaaggtcgtgttcgtcctcggaggtcccggcgccggca 291
| || |||||||||| ||||||||||| | |||||||| || |||||| || ||| ||
Sbjct: 146131630 gcccacaccgcctcacaaggccgaaggttggattcgtcctgggcggtcccagcaccgaca 146131571
Query: 292 aggggacccagtgcgcccgtatcgtcgagaaatatggctacacacacctttctgccggag 351
|||||||||||| | || | ||| ||||||||||||||| |||||||||||||| |||
Sbjct: 146131570 aggggacccagt-cacctgcatcatcgagaaatatggctctgcacacctttctgcccgag 146131512
Query: 352 aacttcttcgtgatgaaaggaagaaccccgattcacagtatggcgaactgattgaaaagt 411
|| ||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||
Sbjct: 146131511 aatgtcttcatgatgaaaggaagaacccagattcacagtgtggcaaactgattgaaaagt 146131452
Query: 412 acattaaagatggaaagatcgtgccagttgagataa-----ccatcagtttgttaaggag 466
| | ||||||| | ||| |||||||||||||| | |||||||||||||||||||
Sbjct: 146131451 gcgtgtaagatgggaggattgtgccagttgagatcagatcaccatcagtttgttaaggag 146131392
Query: 467 ggaaatggatcagacaatggcggccaatgctcagaagaataaattctt 514
||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 146131391 ggaaatggatcagacaatggcggccaaggctcagaagaataaattctt 146131344
Score = 111 bits (56), Expect = 9e-22
Identities = 126/144 (87%), Gaps = 4/144 (2%)
Strand = Plus / Minus
Query: 1029 cacaggagtagatagtgaattcaagtctaacttcatcgtagctatggtgctcac-taacc 1087
||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 146130571 cacaggagtagatcgtgaattcaagtctaacttcatcgtagctgtggtgctcacaaaaca 146130512
Query: 1088 aagacgactattagctagttctttgtttttattcaaaaag-ata-tccttttctagtttg 1145
|||| ||||| | |||||||| || |||||||||||||| ||| || || ||||||||
Sbjct: 146130511 aagaagactagttactagttctctgattttattcaaaaagaatagcccgttcctagtttg 146130452
Query: 1146 ggccttc-gggagcataacttttt 1168
|||||| ||||||||||||||||
Sbjct: 146130451 tgccttctgggagcataacttttt 146130428
>Sscrofa_Chr06
|| Length = 157765593
Score = 507 bits (256), Expect = e-141
Identities = 259/260 (99%)
Strand = Plus / Minus
Query: 61 tcagcccgcccccttctccgcgccccgccccgcgtctacgcctgccgggctgctgtcagc 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151748224 tcagcccgcccccttttccgcgccccgccccgcgtctacgcctgccgggctgctgtcagc 151748165
Query: 121 tccctcggcgtgccaccaagccgaggtgcatgctgagccgctgcggctgccggctgctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151748164 tccctcggcgtgccaccaagccgaggtgcatgctgagccgctgcggctgccggctgctgc 151748105
Query: 181 acgtcctaggccttagcttcccgctcctgacccgccggccgcttttcctctgtccgcacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151748104 acgtcctaggccttagcttcccgctcctgacccgccggccgcttttcctctgtccgcacc 151748045
Query: 241 gcctcatgaggccgaaggtcgtgttcgtcctcggaggtcccggcgccggcaaggggaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151748044 gcctcatgaggccgaaggtcgtgttcgtcctcggaggtcccggcgccggcaaggggaccc 151747985
Query: 301 agtgcgcccgtatcgtcgag 320
||||||||||||||||||||
Sbjct: 151747984 agtgcgcccgtatcgtcgag 151747965
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 795 gtttttgatgaagttgtgaagatttttgacaaagaaggctaactctatatctgaaagcat 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151714403 gtttttgatgaagttgtgaagatttttgacaaagaaggctaactctatatctgaaagcat 151714344
Query: 855 cctcgaaatcatgcttgaatattgctttgatagctgctatcacaatccctttttaaggca 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151714343 cctcgaaatcatgcttgaatattgctttgatagctgctatcacaatccctttttaaggca 151714284
Query: 915 attttaatctttcgtaattacatctcaattaacggctggaaagtatgtagtaagacaaat 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151714283 attttaatctttcgtaattacatctcaattaacggctggaaagtatgtagtaagacaaat 151714224
Query: 975 taaattttttatcgtcaagggt 996
||||||||||||||||||||||
Sbjct: 151714223 taaattttttatcgtcaagggt 151714202
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 467 ggaaatggatcagacaatggcggccaatgctcagaagaataaattcttaattgatgggtt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151718437 ggaaatggatcagacaatggcggccaatgctcagaagaataaattcttaattgatgggtt 151718378
Query: 527 tccaagaaatcaagacaaccttcaaggttggaacaagaccatggatgggaaagctgatgt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151718377 tccaagaaatcaagacaaccttcaaggttggaacaagaccatggatgggaaagctgatgt 151718318
Query: 587 atctttcgttttgttttttgactgtaataatgag 620
||||||||||||||||||||||||||||||||||
Sbjct: 151718317 atctttcgttttgttttttgactgtaataatgag 151718284
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 319 agaaatatggctacacacacctttctgccggagaacttcttcgtgatgaaaggaagaacc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151722960 agaaatatggctacacacacctttctgccggagaacttcttcgtgatgaaaggaagaacc 151722901
Query: 379 ccgattcacagtatggcgaactgattgaaaagtacattaaagatggaaagatcgtgccag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151722900 ccgattcacagtatggcgaactgattgaaaagtacattaaagatggaaagatcgtgccag 151722841
Query: 439 ttgagataaccatcagtttgttaaggaggg 468
||||||||||||||||||||||||||||||
Sbjct: 151722840 ttgagataaccatcagtttgttaaggaggg 151722811
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 696 agaattcaaacctatcttcagtcaacaaagccaattattgacttatatgaagaaatgggg 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151716161 agaattcaaacctatcttcagtcaacaaagccaattattgacttatatgaagaaatgggg 151716102
Query: 756 aaagtcaagaaaatagatgcttctaaatctgttgatgaagt 796
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 151716101 aaagtcaagaaaatagatgcttctaaatctgttgatgaagt 151716061
Score = 190 bits (96), Expect = 1e-45
Identities = 136/144 (94%), Gaps = 4/144 (2%)
Strand = Plus / Minus
Query: 1029 cacaggagtagatagtgaattcaagtctaacttcatcgtagctatggtgctcact-aacc 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 151714169 cacaggagtagatagtgaattcaagtctaacttcatcgtagctatggtgctcactaaaca 151714110
Query: 1088 aagacgactattagctagttctttgtttttattcaaaaag-atatccttttc-tagtttg 1145
|||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct: 151714109 aagacgactattagctagttctttgtttttattcaaaaagaatatccctttcatagtttg 151714050
Query: 1146 ggccttc-gggagcataacttttt 1168
|||||| | ||||||||||||||
Sbjct: 151714049 tgccttctgtgagcataacttttt 151714026
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 619 agatctgtattgaacgatgtcttgagaggggaaagagtagtggtaggagtgatgacaaca 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151716472 agatctgtattgaacgatgtcttgagaggggaaagagtagtggtaggagtgatgacaaca 151716413
Query: 679 gagagagcttggaaaagag 697
|||||||||||||||||||
Sbjct: 151716412 gagagagcttggaaaagag 151716394
>gb|GL896394.2| Sus scrofa unplaced genomic scaffold ChrUScaf4278
Length = 101685
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 795 gtttttgatgaagttgtgaagatttttgacaaagaaggctaactctatatctgaaagcat 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41419 gtttttgatgaagttgtgaagatttttgacaaagaaggctaactctatatctgaaagcat 41360
Query: 855 cctcgaaatcatgcttgaatattgctttgatagctgctatcacaatccctttttaaggca 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41359 cctcgaaatcatgcttgaatattgctttgatagctgctatcacaatccctttttaaggca 41300
Query: 915 attttaatctttcgtaattacatctcaattaacggctggaaagtatgtagtaagacaaat 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41299 attttaatctttcgtaattacatctcaattaacggctggaaagtatgtagtaagacaaat 41240
Query: 975 taaattttttatcgtcaagggt 996
||||||||||||||||||||||
Sbjct: 41239 taaattttttatcgtcaagggt 41218
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 467 ggaaatggatcagacaatggcggccaatgctcagaagaataaattcttaattgatgggtt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45194 ggaaatggatcagacaatggcggccaatgctcagaagaataaattcttaattgatgggtt 45135
Query: 527 tccaagaaatcaagacaaccttcaaggttggaacaagaccatggatgggaaagctgatgt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45134 tccaagaaatcaagacaaccttcaaggttggaacaagaccatggatgggaaagctgatgt 45075
Query: 587 atctttcgttttgttttttgactgtaataatgag 620
||||||||||||||||||||||||||||||||||
Sbjct: 45074 atctttcgttttgttttttgactgtaataatgag 45041
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 319 agaaatatggctacacacacctttctgccggagaacttcttcgtgatgaaaggaagaacc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49745 agaaatatggctacacacacctttctgccggagaacttcttcgtgatgaaaggaagaacc 49686
Query: 379 ccgattcacagtatggcgaactgattgaaaagtacattaaagatggaaagatcgtgccag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49685 ccgattcacagtatggcgaactgattgaaaagtacattaaagatggaaagatcgtgccag 49626
Query: 439 ttgagataaccatcagtttgttaaggaggg 468
||||||||||||||||||||||||||||||
Sbjct: 49625 ttgagataaccatcagtttgttaaggaggg 49596
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 696 agaattcaaacctatcttcagtcaacaaagccaattattgacttatatgaagaaatgggg 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43059 agaattcaaacctatcttcagtcaacaaagccaattattgacttatatgaagaaatgggg 43000
Query: 756 aaagtcaagaaaatagatgcttctaaatctgttgatgaagt 796
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 42999 aaagtcaagaaaatagatgcttctaaatctgttgatgaagt 42959
Score = 190 bits (96), Expect = 1e-45
Identities = 136/144 (94%), Gaps = 4/144 (2%)
Strand = Plus / Minus
Query: 1029 cacaggagtagatagtgaattcaagtctaacttcatcgtagctatggtgctcact-aacc 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 41185 cacaggagtagatagtgaattcaagtctaacttcatcgtagctatggtgctcactaaaca 41126
Query: 1088 aagacgactattagctagttctttgtttttattcaaaaag-atatccttttc-tagtttg 1145
|||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct: 41125 aagacgactattagctagttctttgtttttattcaaaaagaatatccctttcatagtttg 41066
Query: 1146 ggccttc-gggagcataacttttt 1168
|||||| | ||||||||||||||
Sbjct: 41065 tgccttctgtgagcataacttttt 41042
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 619 agatctgtattgaacgatgtcttgagaggggaaagagtagtggtaggagtgatgacaaca 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43370 agatctgtattgaacgatgtcttgagaggggaaagagtagtggtaggagtgatgacaaca 43311
Query: 679 gagagagcttggaaaagag 697
|||||||||||||||||||
Sbjct: 43310 gagagagcttggaaaagag 43292
>gb|JH118874.1| Sus scrofa unplaced genomic scaffold ChrUScaf3074
Length = 33805
Score = 165 bits (83), Expect = 7e-38
Identities = 147/167 (88%), Gaps = 1/167 (0%)
Strand = Plus / Plus
Query: 814 agatttttgacaaagaaggctaactctatatctgaaagcatcctcgaaatcatgcttgaa 873
|||||||||||||||||| ||||||||| | || |||||||||| |||||||||||||||
Sbjct: 24157 agatttttgacaaagaagtctaactctaaagctaaaagcatccttgaaatcatgcttgaa 24216
Query: 874 tattgctttgatagctgctatcacaatccctttttaaggcaattttaatctttcgtaatt 933
||||||||||||||||||| |||||||||| ||||||| |||||| | |||||| || ||
Sbjct: 24217 tattgctttgatagctgctgtcacaatccc-ttttaagacaatttcactctttcatagtt 24275
Query: 934 acatctcaattaacggctggaaagtatgtagtaagacaaattaaatt 980
||||| |||| | |||| |||||| |||||||||||||||||||
Sbjct: 24276 gtgtctcagttaatgactgggaagtatatagtaagacaaattaaatt 24322
>Sscrofa_Chr01
|| Length = 315321322
Score = 165 bits (83), Expect = 7e-38
Identities = 147/167 (88%), Gaps = 1/167 (0%)
Strand = Plus / Plus
Query: 814 agatttttgacaaagaaggctaactctatatctgaaagcatcctcgaaatcatgcttgaa 873
|||||||||||||||||| ||||||||| | || |||||||||| |||||||||||||||
Sbjct: 190797429 agatttttgacaaagaagtctaactctaaagctaaaagcatccttgaaatcatgcttgaa 190797488
Query: 874 tattgctttgatagctgctatcacaatccctttttaaggcaattttaatctttcgtaatt 933
||||||||||||||||||| |||||||||| ||||||| |||||| | |||||| || ||
Sbjct: 190797489 tattgctttgatagctgctgtcacaatccc-ttttaagacaatttcactctttcatagtt 190797547
Query: 934 acatctcaattaacggctggaaagtatgtagtaagacaaattaaatt 980
||||| |||| | |||| |||||| |||||||||||||||||||
Sbjct: 190797548 gtgtctcagttaatgactgggaagtatatagtaagacaaattaaatt 190797594
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,212,756
Number of extensions: 244
Number of successful extensions: 244
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 18
Length of query: 1168
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1147
Effective length of database: 2,808,413,156
Effective search space: 3221249889932
Effective search space used: 3221249889932
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)