Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013782
(920 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776546.1| neurofilament light polypeptide [Bos taurus]. 353 2e-97
Alignment gi|NP_001069426.1| alpha-internexin [Bos taurus]. 171 1e-42
Alignment gi|NP_776394.2| vimentin [Bos taurus]. 150 1e-36
Alignment gi|NP_001075044.1| desmin [Bos taurus]. 149 4e-36
Alignment gi|NP_001095848.1| peripherin [Bos taurus]. 144 1e-34
Alignment gi|NP_776490.2| glial fibrillary acidic protein [Bos taurus]. 132 4e-31
Alignment gi|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide... 132 4e-31
Alignment gi|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [B... 132 4e-31
Alignment gi|XP_001252037.1| PREDICTED: neurofilament triplet M protein [... 132 4e-31
Alignment gi|NP_001028782.1| keratin, type II cytoskeletal 8 [Bos taurus]. 101 1e-21
>ref|NP_776546.1| neurofilament light polypeptide [Bos taurus].
Length = 555
Score = 353 bits (905), Expect = 2e-97
Identities = 199/275 (72%), Positives = 202/275 (73%)
Frame = +2
Query: 95 MSSFSYEPYYSTSYKRRYVETPRVHISSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 274
MSSFSYEPYYSTSYKRRYVETPRVHISSV
Sbjct: 1 MSSFSYEPYYSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSS 60
Query: 275 XXXXXXXLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 454
LE+LDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA
Sbjct: 61 SGSLMPSLESLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 120
Query: 455 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 634
ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE
Sbjct: 121 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 180
Query: 635 EVLSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXX 814
EVLSREDAEGRLM IDSLMDEIAFLKKVH
Sbjct: 181 EVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQAQIQY 240
Query: 815 XXXSVEMDVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
SVEMDVSSKPDLSAALKDIRAQYEKLAA++MQ
Sbjct: 241 AQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQ 275
>ref|NP_001069426.1| alpha-internexin [Bos taurus].
Length = 499
Score = 171 bits (432), Expect = 1e-42
Identities = 97/209 (46%), Positives = 134/209 (64%), Gaps = 2/209 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+ LDLSQ AA +N+ K IRT EK QLQ LNDRFA FIE+VH+LE QN+ LEAEL LRQ+
Sbjct: 73 DGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQR 132
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
H+EPSR L+++E+RDLR E+A++ + ER+GL E ++ L+AR EEE RE A
Sbjct: 133 HAEPSRVGELFQRELRDLRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGA 192
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L ++SL+DE+AF+++VH + E+
Sbjct: 193 ERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEV 252
Query: 836 DVS-SKPDLSAALKDIRAQYEKLAAQDMQ 919
DV+ +KPDLS+AL++IRAQYE LAA+++Q
Sbjct: 253 DVAVAKPDLSSALREIRAQYESLAAKNLQ 281
>ref|NP_776394.2| vimentin [Bos taurus].
Length = 466
Score = 150 bits (380), Expect = 1e-36
Identities = 85/207 (41%), Positives = 125/207 (60%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+++D S AI+ + K+ RT EK +LQ+LNDRFA++I++V LEQQNK+L AEL L K
Sbjct: 82 DSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL--K 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
SR LYE+E+R+LR + TN+K ++ ER+ L E + L+ + +EE+L RE+A
Sbjct: 140 GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA 199
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L ++SL +EIAFLKK+H ++MD
Sbjct: 200 ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMD 259
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDMQ 919
V SKPDL+AAL+D+R QYE +AA+++Q
Sbjct: 260 V-SKPDLTAALRDVRQQYESVAAKNLQ 285
>ref|NP_001075044.1| desmin [Bos taurus].
Length = 470
Score = 149 bits (375), Expect = 4e-36
Identities = 88/206 (42%), Positives = 123/206 (59%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + RT EK +LQ+LNDRFA++IE+V LEQQN L AE V R K
Sbjct: 87 ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAE--VNRLK 144
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R +YE+E+R+LR E TN++ + ER+ L + L+ L+A+ +EE+ +E+A
Sbjct: 145 GREPTRVAEIYEEELRELRRQVEVLTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEA 204
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L I+SL +EIAFLKKVH VEMD
Sbjct: 205 ENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMD 264
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDM 916
+ SKPDL+AAL+DIRAQYE +AA+++
Sbjct: 265 M-SKPDLTAALRDIRAQYETIAAKNI 289
>ref|NP_001095848.1| peripherin [Bos taurus].
Length = 469
Score = 144 bits (362), Expect = 1e-34
Identities = 88/208 (42%), Positives = 119/208 (57%), Gaps = 1/208 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + R+ EK +LQ+LNDRFA+FIE+V LEQQN L EL R +
Sbjct: 75 ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELNQARGQ 134
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R L +QE+R+LR E E+ +Q ER+GL E L L+ R EEE REDA
Sbjct: 135 --EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDA 192
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXS-VEM 835
E L+ I+SLMDEI FLKK+H VE+
Sbjct: 193 EHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQLSVESQQVQHVEV 252
Query: 836 DVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
+ + KP+L+AAL+DIRAQYE +AA+++Q
Sbjct: 253 EATVKPELTAALRDIRAQYESIAAKNLQ 280
>ref|NP_776490.2| glial fibrillary acidic protein [Bos taurus].
Length = 428
Score = 132 bits (332), Expect = 4e-31
Identities = 78/204 (38%), Positives = 114/204 (55%)
Frame = +2
Query: 305 LDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHS 484
+D S A+++ K R E+A++ +LNDRFAS+IE+V LEQQNK L AEL LR K
Sbjct: 46 VDFSLAGALNSGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAK-- 103
Query: 485 EPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEG 664
EP++ +Y+ E+R+LRL + T L+ ER+ L + L L+ + ++E R +AE
Sbjct: 104 EPTKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQDLGTLRQKLQDETNQRLEAEN 163
Query: 665 RLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVS 844
L I+SL +EI FL+K+H VEMDV
Sbjct: 164 NLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLAQQQVHVEMDV- 222
Query: 845 SKPDLSAALKDIRAQYEKLAAQDM 916
+KPDL+AAL++IR QYE +A+ +M
Sbjct: 223 AKPDLTAALREIRTQYEAVASSNM 246
>ref|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
Length = 931
Score = 132 bits (332), Expect = 4e-31
Identities = 80/212 (37%), Positives = 112/212 (52%), Gaps = 7/212 (3%)
Frame = +2
Query: 302 NLDLSQVAAISN-------DLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAEL 460
+LD SQ +++ N D K R+ EK QLQ LNDRFA +IE+VH LEQQNK +EAE+
Sbjct: 74 SLDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEI 133
Query: 461 LVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEV 640
LRQK + ++ Y+QEIR+LR E +EK +Q + + LEE + L+ R+EEE
Sbjct: 134 QALRQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEA 193
Query: 641 LSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXX 820
R+D E + + SL DE+AFL+ H
Sbjct: 194 RLRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASH 253
Query: 821 XSVEMDVSSKPDLSAALKDIRAQYEKLAAQDM 916
+VE K D+S ALK+IR+Q E + Q+M
Sbjct: 254 ITVERKDYLKTDISTALKEIRSQLESHSDQNM 285
>ref|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
Length = 931
Score = 132 bits (332), Expect = 4e-31
Identities = 80/212 (37%), Positives = 112/212 (52%), Gaps = 7/212 (3%)
Frame = +2
Query: 302 NLDLSQVAAISN-------DLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAEL 460
+LD SQ +++ N D K R+ EK QLQ LNDRFA +IE+VH LEQQNK +EAE+
Sbjct: 74 SLDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEI 133
Query: 461 LVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEV 640
LRQK + ++ Y+QEIR+LR E +EK +Q + + LEE + L+ R+EEE
Sbjct: 134 QALRQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEA 193
Query: 641 LSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXX 820
R+D E + + SL DE+AFL+ H
Sbjct: 194 RLRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASH 253
Query: 821 XSVEMDVSSKPDLSAALKDIRAQYEKLAAQDM 916
+VE K D+S ALK+IR+Q E + Q+M
Sbjct: 254 ITVERKDYLKTDISTALKEIRSQLESHSDQNM 285
>ref|XP_001252037.1| PREDICTED: neurofilament triplet M protein [Bos taurus].
Length = 931
Score = 132 bits (332), Expect = 4e-31
Identities = 80/212 (37%), Positives = 112/212 (52%), Gaps = 7/212 (3%)
Frame = +2
Query: 302 NLDLSQVAAISN-------DLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAEL 460
+LD SQ +++ N D K R+ EK QLQ LNDRFA +IE+VH LEQQNK +EAE+
Sbjct: 74 SLDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEI 133
Query: 461 LVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEV 640
LRQK + ++ Y+QEIR+LR E +EK +Q + + LEE + L+ R+EEE
Sbjct: 134 QALRQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEA 193
Query: 641 LSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXX 820
R+D E + + SL DE+AFL+ H
Sbjct: 194 RLRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASH 253
Query: 821 XSVEMDVSSKPDLSAALKDIRAQYEKLAAQDM 916
+VE K D+S ALK+IR+Q E + Q+M
Sbjct: 254 ITVERKDYLKTDISTALKEIRSQLESHSDQNM 285
>ref|NP_001028782.1| keratin, type II cytoskeletal 8 [Bos taurus].
Length = 478
Score = 101 bits (251), Expect = 1e-21
Identities = 55/192 (28%), Positives = 99/192 (51%)
Frame = +2
Query: 329 ISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRAL 508
+ +++++RTQEK Q++ LN++FASFI++V LEQQNKVLE + +L+Q+ + S +
Sbjct: 87 VDPNIQAVRTQEKEQIKTLNNKFASFIDKVRHLEQQNKVLETKWNLLQQQKTARSNIDNM 146
Query: 509 YEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMXXXXX 688
+E I +LR E EK L+ E ++ + + + +YE+E+ R D E +
Sbjct: 147 FESYINNLRRQLETLAQEKLKLEVELGNMQGLVEDFKTKYEDEIQKRTDMENEFVIIKKD 206
Query: 689 XXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVSSKPDLSAA 868
++ L DEI F ++++ + MD + DL
Sbjct: 207 VDEAYMNKVELESRLEGLTDEINFYRQLYEEEIREMQSQISDTSVVLSMDNNRNLDLDGI 266
Query: 869 LKDIRAQYEKLA 904
+ +++AQYE++A
Sbjct: 267 IAEVKAQYEEIA 278
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 18,990,838
Number of extensions: 366338
Number of successful extensions: 2824
Number of sequences better than 1.0e-05: 100
Number of HSP's gapped: 2690
Number of HSP's successfully gapped: 100
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013782
(920 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534572.1| PREDICTED: similar to neurofilament, light poly... 355 4e-98
Alignment gi|XP_858667.1| PREDICTED: similar to Neurofilament triplet L p... 284 7e-77
Alignment gi|XP_858626.1| PREDICTED: similar to neurofilament, light poly... 280 2e-75
Alignment gi|XP_543999.1| PREDICTED: similar to internexin neuronal inter... 171 1e-42
Alignment gi|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Cani... 150 1e-36
Alignment gi|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis... 150 1e-36
Alignment gi|XP_856309.1| PREDICTED: similar to Vimentin isoform 8 [Canis... 150 1e-36
Alignment gi|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis... 150 1e-36
Alignment gi|XP_856226.1| PREDICTED: similar to Vimentin isoform 6 [Canis... 150 1e-36
Alignment gi|XP_856182.1| PREDICTED: similar to Vimentin isoform 5 [Canis... 150 1e-36
>ref|XP_534572.1| PREDICTED: similar to neurofilament, light polypeptide isoform 1
[Canis familiaris].
Length = 544
Score = 355 bits (910), Expect = 4e-98
Identities = 200/275 (72%), Positives = 202/275 (73%)
Frame = +2
Query: 95 MSSFSYEPYYSTSYKRRYVETPRVHISSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 274
MSSFSYEPYYSTSYKRRYVETPRVHISSV
Sbjct: 1 MSSFSYEPYYSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSS 60
Query: 275 XXXXXXXLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 454
LENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA
Sbjct: 61 SGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 120
Query: 455 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 634
ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE
Sbjct: 121 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 180
Query: 635 EVLSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXX 814
EVLSREDAEGRLM IDSLMDEIAFLKKVH
Sbjct: 181 EVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQAQIQY 240
Query: 815 XXXSVEMDVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
SVEMDVSSKPDLSAALKDIRAQYEKLAA++MQ
Sbjct: 241 AQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQ 275
>ref|XP_858667.1| PREDICTED: similar to Neurofilament triplet L protein (68 kDa
neurofilament protein) (Neurofilament light polypeptide)
(NF-L) isoform 4 [Canis familiaris].
Length = 452
Score = 284 bits (727), Expect = 7e-77
Identities = 155/193 (80%), Positives = 155/193 (80%)
Frame = +2
Query: 95 MSSFSYEPYYSTSYKRRYVETPRVHISSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 274
MSSFSYEPYYSTSYKRRYVETPRVHISSV
Sbjct: 1 MSSFSYEPYYSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSS 60
Query: 275 XXXXXXXLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 454
LENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA
Sbjct: 61 SGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 120
Query: 455 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 634
ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE
Sbjct: 121 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 180
Query: 635 EVLSREDAEGRLM 673
EVLSREDAEGRLM
Sbjct: 181 EVLSREDAEGRLM 193
>ref|XP_858626.1| PREDICTED: similar to neurofilament, light polypeptide isoform 3
[Canis familiaris].
Length = 501
Score = 280 bits (715), Expect = 2e-75
Identities = 170/275 (61%), Positives = 174/275 (63%)
Frame = +2
Query: 95 MSSFSYEPYYSTSYKRRYVETPRVHISSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 274
MSSFSYEPYYSTSYKRRYVETPRVHISSV
Sbjct: 1 MSSFSYEPYYSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSS 60
Query: 275 XXXXXXXLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 454
LENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA
Sbjct: 61 SGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 120
Query: 455 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 634
ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQA
Sbjct: 121 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQA--------------------- 159
Query: 635 EVLSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXX 814
L+R + E R IDSLMDEIAFLKKVH
Sbjct: 160 -ALARAELEKR---------------------IDSLMDEIAFLKKVHEEEIAELQAQIQY 197
Query: 815 XXXSVEMDVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
SVEMDVSSKPDLSAALKDIRAQYEKLAA++MQ
Sbjct: 198 AQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQ 232
>ref|XP_543999.1| PREDICTED: similar to internexin neuronal intermediate filament
protein, alpha isoform 1 [Canis familiaris].
Length = 500
Score = 171 bits (432), Expect = 1e-42
Identities = 97/209 (46%), Positives = 134/209 (64%), Gaps = 2/209 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+ LDLSQ AA +N+ K IRT EK QLQ LNDRFA FIE+VH+LE QN+ LEAEL LRQ+
Sbjct: 73 DGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQR 132
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
H+EPSR L+++E+RDLR E+A++ + ER+GL E ++ L+AR EEE RE A
Sbjct: 133 HAEPSRVGELFQRELRDLRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGA 192
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L ++SL+DE+AF+++VH + E+
Sbjct: 193 ERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEV 252
Query: 836 DVS-SKPDLSAALKDIRAQYEKLAAQDMQ 919
DV+ +KPDLS+AL++IRAQYE LAA+++Q
Sbjct: 253 DVAVAKPDLSSALREIRAQYESLAAKNLQ 281
>ref|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Canis familiaris].
Length = 466
Score = 150 bits (380), Expect = 1e-36
Identities = 85/207 (41%), Positives = 125/207 (60%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+++D S AI+ + K+ RT EK +LQ+LNDRFA++I++V LEQQNK+L AEL L K
Sbjct: 82 DSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL--K 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
SR LYE+E+R+LR + TN+K ++ ER+ L E + L+ + +EE+L RE+A
Sbjct: 140 GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA 199
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L ++SL +EIAFLKK+H ++MD
Sbjct: 200 ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMD 259
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDMQ 919
V SKPDL+AAL+D+R QYE +AA+++Q
Sbjct: 260 V-SKPDLTAALRDVRQQYESVAAKNLQ 285
>ref|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis familiaris].
Length = 458
Score = 150 bits (380), Expect = 1e-36
Identities = 85/207 (41%), Positives = 125/207 (60%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+++D S AI+ + K+ RT EK +LQ+LNDRFA++I++V LEQQNK+L AEL L K
Sbjct: 82 DSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL--K 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
SR LYE+E+R+LR + TN+K ++ ER+ L E + L+ + +EE+L RE+A
Sbjct: 140 GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA 199
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L ++SL +EIAFLKK+H ++MD
Sbjct: 200 ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMD 259
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDMQ 919
V SKPDL+AAL+D+R QYE +AA+++Q
Sbjct: 260 V-SKPDLTAALRDVRQQYESVAAKNLQ 285
>ref|XP_856309.1| PREDICTED: similar to Vimentin isoform 8 [Canis familiaris].
Length = 424
Score = 150 bits (380), Expect = 1e-36
Identities = 85/207 (41%), Positives = 125/207 (60%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+++D S AI+ + K+ RT EK +LQ+LNDRFA++I++V LEQQNK+L AEL L K
Sbjct: 82 DSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL--K 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
SR LYE+E+R+LR + TN+K ++ ER+ L E + L+ + +EE+L RE+A
Sbjct: 140 GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA 199
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L ++SL +EIAFLKK+H ++MD
Sbjct: 200 ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMD 259
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDMQ 919
V SKPDL+AAL+D+R QYE +AA+++Q
Sbjct: 260 V-SKPDLTAALRDVRQQYESVAAKNLQ 285
>ref|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis familiaris].
Length = 433
Score = 150 bits (380), Expect = 1e-36
Identities = 85/207 (41%), Positives = 125/207 (60%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+++D S AI+ + K+ RT EK +LQ+LNDRFA++I++V LEQQNK+L AEL L K
Sbjct: 82 DSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL--K 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
SR LYE+E+R+LR + TN+K ++ ER+ L E + L+ + +EE+L RE+A
Sbjct: 140 GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA 199
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L ++SL +EIAFLKK+H ++MD
Sbjct: 200 ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMD 259
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDMQ 919
V SKPDL+AAL+D+R QYE +AA+++Q
Sbjct: 260 V-SKPDLTAALRDVRQQYESVAAKNLQ 285
>ref|XP_856226.1| PREDICTED: similar to Vimentin isoform 6 [Canis familiaris].
Length = 419
Score = 150 bits (380), Expect = 1e-36
Identities = 85/207 (41%), Positives = 125/207 (60%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+++D S AI+ + K+ RT EK +LQ+LNDRFA++I++V LEQQNK+L AEL L K
Sbjct: 82 DSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL--K 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
SR LYE+E+R+LR + TN+K ++ ER+ L E + L+ + +EE+L RE+A
Sbjct: 140 GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA 199
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L ++SL +EIAFLKK+H ++MD
Sbjct: 200 ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMD 259
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDMQ 919
V SKPDL+AAL+D+R QYE +AA+++Q
Sbjct: 260 V-SKPDLTAALRDVRQQYESVAAKNLQ 285
>ref|XP_856182.1| PREDICTED: similar to Vimentin isoform 5 [Canis familiaris].
Length = 379
Score = 150 bits (380), Expect = 1e-36
Identities = 85/207 (41%), Positives = 125/207 (60%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+++D S AI+ + K+ RT EK +LQ+LNDRFA++I++V LEQQNK+L AEL L K
Sbjct: 82 DSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL--K 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
SR LYE+E+R+LR + TN+K ++ ER+ L E + L+ + +EE+L RE+A
Sbjct: 140 GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA 199
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L ++SL +EIAFLKK+H ++MD
Sbjct: 200 ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMD 259
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDMQ 919
V SKPDL+AAL+D+R QYE +AA+++Q
Sbjct: 260 V-SKPDLTAALRDVRQQYESVAAKNLQ 285
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 19,858,607
Number of extensions: 378884
Number of successful extensions: 3315
Number of sequences better than 1.0e-05: 97
Number of HSP's gapped: 3090
Number of HSP's successfully gapped: 102
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013782
(920 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132861.1| PREDICTED: neurofilament light polypeptide-l... 355 3e-98
Alignment gi|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus sc... 169 2e-42
Alignment gi|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa]. 149 2e-36
Alignment gi|NP_001001535.1| desmin [Sus scrofa]. 149 3e-36
Alignment gi|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa]. 142 3e-34
Alignment gi|XP_003126153.1| PREDICTED: peripherin [Sus scrofa]. 142 3e-34
Alignment gi|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [... 132 3e-31
Alignment gi|XP_001925857.2| PREDICTED: neurofilament medium polypeptide-... 131 6e-31
Alignment gi|NP_001153087.1| keratin, type II cytoskeletal 8 [Sus scrofa]. 102 2e-22
Alignment gi|XP_001927253.2| PREDICTED: LOW QUALITY PROTEIN: keratin, typ... 101 7e-22
>ref|XP_003132861.1| PREDICTED: neurofilament light polypeptide-like isoform 2 [Sus
scrofa].
Length = 544
Score = 355 bits (910), Expect = 3e-98
Identities = 200/275 (72%), Positives = 202/275 (73%)
Frame = +2
Query: 95 MSSFSYEPYYSTSYKRRYVETPRVHISSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 274
MSSFSYEPYYSTSYKRRYVETPRVHISSV
Sbjct: 1 MSSFSYEPYYSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSS 60
Query: 275 XXXXXXXLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 454
LENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA
Sbjct: 61 SGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 120
Query: 455 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 634
ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE
Sbjct: 121 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 180
Query: 635 EVLSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXX 814
EVLSREDAEGRLM IDSLMDEIAFLKKVH
Sbjct: 181 EVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQAQIQY 240
Query: 815 XXXSVEMDVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
SVEMDVSSKPDLSAALKDIRAQYEKLAA++MQ
Sbjct: 241 AQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQ 275
>ref|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus scrofa].
Length = 477
Score = 169 bits (428), Expect = 2e-42
Identities = 96/209 (45%), Positives = 134/209 (64%), Gaps = 2/209 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+ LDLSQ AA +N+ K IRT EK QLQ LNDRFA FIE+VH+LE QN+ LEAEL LRQ+
Sbjct: 73 DGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQR 132
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
H+EPSR L+++E+R+LR E+A++ + ER+GL E ++ L+AR EEE RE A
Sbjct: 133 HAEPSRVGELFQRELRELRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGA 192
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L ++SL+DE+AF+++VH + E+
Sbjct: 193 ERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEV 252
Query: 836 DVS-SKPDLSAALKDIRAQYEKLAAQDMQ 919
DV+ +KPDLS+AL++IRAQYE LAA+++Q
Sbjct: 253 DVAVAKPDLSSALREIRAQYESLAAKNLQ 281
>ref|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa].
Length = 466
Score = 149 bits (376), Expect = 2e-36
Identities = 85/205 (41%), Positives = 122/205 (59%)
Frame = +2
Query: 305 LDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHS 484
+D S AI+ + K+ RT EK +LQ+LNDRFA++I++V LEQQNK+L AEL L K
Sbjct: 84 VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL--KGQ 141
Query: 485 EPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEG 664
SR LYE+E+R+LR + TN+K ++ ER+ L E + L+ + +EE L RE+AE
Sbjct: 142 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAES 201
Query: 665 RLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVS 844
L ++SL +EIAFLKK+H ++MDV
Sbjct: 202 TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDV- 260
Query: 845 SKPDLSAALKDIRAQYEKLAAQDMQ 919
SKPDL+AAL+D+R QYE +AA+++Q
Sbjct: 261 SKPDLTAALRDVRQQYESVAAKNLQ 285
>ref|NP_001001535.1| desmin [Sus scrofa].
Length = 471
Score = 149 bits (375), Expect = 3e-36
Identities = 88/206 (42%), Positives = 123/206 (59%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + RT EK +LQ+LNDRFA++IE+V LEQQN L AE V R K
Sbjct: 88 ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAE--VNRLK 145
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R +YE+E+R+LR E TN++ + ER+ L + L+ L+A+ +EE+ +E+A
Sbjct: 146 GREPTRVAEIYEEELRELRRQVEVLTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEA 205
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L I+SL +EIAFLKKVH VEMD
Sbjct: 206 ENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMD 265
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDM 916
+ SKPDL+AAL+DIRAQYE +AA+++
Sbjct: 266 M-SKPDLTAALRDIRAQYETIAAKNI 290
>ref|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa].
Length = 469
Score = 142 bits (358), Expect = 3e-34
Identities = 87/208 (41%), Positives = 118/208 (56%), Gaps = 1/208 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + R+ EK +LQ+LNDRFA+FIE+V LEQQN L EL R +
Sbjct: 75 ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 134
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R L +QE+R+LR E E+ +Q ER+GL E L L+ R EEE REDA
Sbjct: 135 --EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDA 192
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L+ I+SLMDEI FLKK+H E+
Sbjct: 193 EHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQQFEV 252
Query: 836 DVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
+ + KP+L+AAL+DIRAQYE +AA+++Q
Sbjct: 253 EATVKPELTAALRDIRAQYESIAAKNLQ 280
>ref|XP_003126153.1| PREDICTED: peripherin [Sus scrofa].
Length = 469
Score = 142 bits (358), Expect = 3e-34
Identities = 87/208 (41%), Positives = 118/208 (56%), Gaps = 1/208 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + R+ EK +LQ+LNDRFA+FIE+V LEQQN L EL R +
Sbjct: 75 ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 134
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R L +QE+R+LR E E+ +Q ER+GL E L L+ R EEE REDA
Sbjct: 135 --EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDA 192
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L+ I+SLMDEI FLKK+H E+
Sbjct: 193 EHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQQFEV 252
Query: 836 DVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
+ + KP+L+AAL+DIRAQYE +AA+++Q
Sbjct: 253 EATVKPELTAALRDIRAQYESIAAKNLQ 280
>ref|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [Sus scrofa].
Length = 428
Score = 132 bits (331), Expect = 3e-31
Identities = 79/205 (38%), Positives = 113/205 (55%)
Frame = +2
Query: 305 LDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHS 484
+D S A++ K R E+A++ +LNDRFAS+IE+V LEQQNK L AEL LR K
Sbjct: 46 VDFSLAGALNTGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAK-- 103
Query: 485 EPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEG 664
EP++ +Y+ E+R+LRL + T L+ ER+ L + L L+ + ++E R +AE
Sbjct: 104 EPTKLADVYQAELRELRLRLDQLTANGARLEVERDNLAQDLGTLRQKLQDETNLRLEAEN 163
Query: 665 RLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVS 844
L I+SL +EI FL+K+H VEMDV
Sbjct: 164 NLATYRQEADEATLARLDLERKIESLEEEIRFLRKIHDEEVRELQEQLAQQQVHVEMDV- 222
Query: 845 SKPDLSAALKDIRAQYEKLAAQDMQ 919
+KPDL+AAL++IR QYE +A +MQ
Sbjct: 223 TKPDLTAALREIRTQYEAVATSNMQ 247
>ref|XP_001925857.2| PREDICTED: neurofilament medium polypeptide-like isoform 1 [Sus
scrofa].
Length = 412
Score = 131 bits (329), Expect = 6e-31
Identities = 80/212 (37%), Positives = 113/212 (53%), Gaps = 7/212 (3%)
Frame = +2
Query: 302 NLDLSQVAAISN-------DLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAEL 460
+LD SQ +++ N D K R+ EK QLQ LNDRFA +IE+VH LEQQNK +EAE+
Sbjct: 74 SLDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEI 133
Query: 461 LVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEV 640
LRQK + ++ Y+QEIR+LR E +EK +Q + + LEE + L+ R+EEE
Sbjct: 134 QALRQKQASHAQLGDAYDQEIRELRATLELVNHEKAQVQLDSDHLEEDIHRLKERFEEEA 193
Query: 641 LSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXX 820
R+D E + + SL DE+AFL+ H
Sbjct: 194 RLRDDTEAAIRALRKDIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASH 253
Query: 821 XSVEMDVSSKPDLSAALKDIRAQYEKLAAQDM 916
+VE K D+S+ALK+IR+Q E + Q+M
Sbjct: 254 ITVERKDYLKTDISSALKEIRSQLECHSDQNM 285
>ref|NP_001153087.1| keratin, type II cytoskeletal 8 [Sus scrofa].
Length = 489
Score = 102 bits (255), Expect = 2e-22
Identities = 57/192 (29%), Positives = 99/192 (51%)
Frame = +2
Query: 329 ISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRAL 508
+ +++++RTQEK Q++ LN++FASFI++V LEQQNKVLE + +L+Q+ + S +
Sbjct: 88 VDPNIQAVRTQEKEQIKTLNNKFASFIDKVRHLEQQNKVLETKWNLLQQQKTARSNIDNM 147
Query: 509 YEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMXXXXX 688
+E I +LR E EK L+ E ++ + + + +YEEE+ R D E +
Sbjct: 148 FESYINNLRRQLETLAQEKLKLEVELGNMQGLVEDFKNKYEEEIQKRTDMENEFVIIKKD 207
Query: 689 XXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVSSKPDLSAA 868
++ L DEI F ++++ + MD S DL
Sbjct: 208 VDEAYMNKVELESRLEGLTDEINFYRQLYEEEIREMQSQISDTSVVLSMDNSRSLDLDGI 267
Query: 869 LKDIRAQYEKLA 904
+ +++AQYE++A
Sbjct: 268 IAEVKAQYEEIA 279
>ref|XP_001927253.2| PREDICTED: LOW QUALITY PROTEIN: keratin, type II cytoskeletal 4
[Sus scrofa].
Length = 611
Score = 101 bits (251), Expect = 7e-22
Identities = 61/193 (31%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Frame = +2
Query: 329 ISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPS--RFR 502
I +++ +RTQE+ Q++ LND+FASFI++V LEQQNKVLE + +L+Q+ + S
Sbjct: 211 IDPEIQKVRTQEREQIKILNDKFASFIDKVRFLEQQNKVLETKWNLLQQQKTTTSSKNLD 270
Query: 503 ALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMXXX 682
+E I LR + TN+K LQ E + +++++ + +A+YEEE+ R AE +
Sbjct: 271 PFFEAYISALRKQLDTLTNDKGYLQSELKIMQDSVEDFKAKYEEEINKRTAAENDFVVLK 330
Query: 683 XXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVSSKPDLS 862
+D L DEI FL+ ++ + MD + DL
Sbjct: 331 KDVDAAYMNKVELEAKVDGLNDEINFLRILYAAELSQMQTHVSDTSVVLSMDNNRDLDLD 390
Query: 863 AALKDIRAQYEKL 901
+ + ++RAQYE++
Sbjct: 391 SIIAEVRAQYEEI 403
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 12,237,821
Number of extensions: 235586
Number of successful extensions: 1633
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 1546
Number of HSP's successfully gapped: 55
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013782
(920 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035040.1| neurofilament light polypeptide [Mus musculus]. 350 7e-97
Alignment gi|NP_666212.3| alpha-internexin [Mus musculus]. 168 6e-42
Alignment gi|NP_034173.1| desmin [Mus musculus]. 150 1e-36
Alignment gi|NP_035831.2| vimentin [Mus musculus]. 149 3e-36
Alignment gi|NP_001157061.1| peripherin isoform 3 [Mus musculus]. 144 1e-34
Alignment gi|NP_001157060.1| peripherin isoform 2 [Mus musculus]. 144 1e-34
Alignment gi|NP_038667.2| peripherin isoform 1 [Mus musculus]. 144 1e-34
Alignment gi|NP_032717.2| neurofilament medium polypeptide [Mus musculus]. 132 5e-31
Alignment gi|NP_001124492.1| glial fibrillary acidic protein isoform 1 [M... 127 9e-30
Alignment gi|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus ... 127 9e-30
>ref|NP_035040.1| neurofilament light polypeptide [Mus musculus].
Length = 543
Score = 350 bits (899), Expect = 7e-97
Identities = 197/275 (71%), Positives = 201/275 (73%)
Frame = +2
Query: 95 MSSFSYEPYYSTSYKRRYVETPRVHISSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 274
MSSF Y+PY+STSYKRRYVETPRVHISSV
Sbjct: 1 MSSFGYDPYFSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSS 60
Query: 275 XXXXXXXLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 454
LENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA
Sbjct: 61 SGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 120
Query: 455 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 634
ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE
Sbjct: 121 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 180
Query: 635 EVLSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXX 814
EVLSREDAEGRLM IDSLMDEIAFLKKVH
Sbjct: 181 EVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQAQIQY 240
Query: 815 XXXSVEMDVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
SVEMDVSSKPDLSAALKDIRAQYEKLAA++MQ
Sbjct: 241 AQISVEMDVSSKPDLSAALKDIRAQYEKLAAKNMQ 275
>ref|NP_666212.3| alpha-internexin [Mus musculus].
Length = 501
Score = 168 bits (425), Expect = 6e-42
Identities = 95/209 (45%), Positives = 134/209 (64%), Gaps = 2/209 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+ LDLSQ AA +N+ K IRT EK QLQ LNDRFA FIE+VH+LE QN+ LEAEL LRQ+
Sbjct: 73 DGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQR 132
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
H+EPSR L+++E+R+LR E+A++ + ER+GL E ++ L+AR EEE RE A
Sbjct: 133 HAEPSRVGELFQRELRELRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGA 192
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L ++SL+DE+AF+++VH + E+
Sbjct: 193 ERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEV 252
Query: 836 DVS-SKPDLSAALKDIRAQYEKLAAQDMQ 919
DV+ +KPDL++AL++IRAQYE LAA+++Q
Sbjct: 253 DVAVAKPDLTSALREIRAQYESLAAKNLQ 281
>ref|NP_034173.1| desmin [Mus musculus].
Length = 469
Score = 150 bits (379), Expect = 1e-36
Identities = 90/206 (43%), Positives = 123/206 (59%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + RT EK +LQ+LNDRFA++IE+V LEQQN L AE V R K
Sbjct: 86 ELLDFSLADAVNQEFLATRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAE--VNRLK 143
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R LYE+E+R+LR E TN++ + ER+ L + L+ L+A+ +EE+ RE+A
Sbjct: 144 GREPTRVAELYEEEMRELRRQVEVLTNQRARVDVERDNLIDDLQRLKAKLQEEIQLREEA 203
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L I+SL +EIAFLKKVH VEMD
Sbjct: 204 ENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMD 263
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDM 916
+ SKPDL+AAL+DIRAQYE +AA+++
Sbjct: 264 M-SKPDLTAALRDIRAQYETIAAKNI 288
>ref|NP_035831.2| vimentin [Mus musculus].
Length = 466
Score = 149 bits (376), Expect = 3e-36
Identities = 84/207 (40%), Positives = 125/207 (60%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+++D S AI+ + K+ RT EK +LQ+LNDRFA++I++V LEQQNK+L AEL L K
Sbjct: 82 DSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL--K 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
SR LYE+E+R+LR + TN+K ++ ER+ L E + L+ + +EE+L RE+A
Sbjct: 140 GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA 199
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L ++SL +EIAFLKK+H +++D
Sbjct: 200 ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVD 259
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDMQ 919
V SKPDL+AAL+D+R QYE +AA+++Q
Sbjct: 260 V-SKPDLTAALRDVRQQYESVAAKNLQ 285
>ref|NP_001157061.1| peripherin isoform 3 [Mus musculus].
Length = 475
Score = 144 bits (363), Expect = 1e-34
Identities = 88/208 (42%), Positives = 119/208 (57%), Gaps = 1/208 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + R+ EK +LQ+LNDRFA+FIE+V LEQQN L EL R +
Sbjct: 80 ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R L +QE+R+LR E E+ +Q ER+GL E L L+ R EEE REDA
Sbjct: 140 --EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDA 197
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L+ I+SLMDEI FLKK+H VE+
Sbjct: 198 EHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEV 257
Query: 836 DVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
+ + KP+L+AAL+DIRAQYE +AA+++Q
Sbjct: 258 EATVKPELTAALRDIRAQYENIAAKNLQ 285
>ref|NP_001157060.1| peripherin isoform 2 [Mus musculus].
Length = 506
Score = 144 bits (363), Expect = 1e-34
Identities = 88/208 (42%), Positives = 119/208 (57%), Gaps = 1/208 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + R+ EK +LQ+LNDRFA+FIE+V LEQQN L EL R +
Sbjct: 80 ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R L +QE+R+LR E E+ +Q ER+GL E L L+ R EEE REDA
Sbjct: 140 --EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDA 197
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L+ I+SLMDEI FLKK+H VE+
Sbjct: 198 EHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEV 257
Query: 836 DVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
+ + KP+L+AAL+DIRAQYE +AA+++Q
Sbjct: 258 EATVKPELTAALRDIRAQYENIAAKNLQ 285
>ref|NP_038667.2| peripherin isoform 1 [Mus musculus].
Length = 507
Score = 144 bits (363), Expect = 1e-34
Identities = 88/208 (42%), Positives = 119/208 (57%), Gaps = 1/208 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + R+ EK +LQ+LNDRFA+FIE+V LEQQN L EL R +
Sbjct: 80 ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R L +QE+R+LR E E+ +Q ER+GL E L L+ R EEE REDA
Sbjct: 140 --EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDA 197
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L+ I+SLMDEI FLKK+H VE+
Sbjct: 198 EHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEV 257
Query: 836 DVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
+ + KP+L+AAL+DIRAQYE +AA+++Q
Sbjct: 258 EATVKPELTAALRDIRAQYENIAAKNLQ 285
>ref|NP_032717.2| neurofilament medium polypeptide [Mus musculus].
Length = 848
Score = 132 bits (331), Expect = 5e-31
Identities = 80/210 (38%), Positives = 112/210 (53%), Gaps = 5/210 (2%)
Frame = +2
Query: 302 NLDLSQVAAISN-----DLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLV 466
+LD SQ +++ N D K R+ EK QLQ LNDRFA +IE+VH LEQQNK +EAE+
Sbjct: 74 SLDFSQSSSLLNGGSGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQA 133
Query: 467 LRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLS 646
LRQK + ++ Y+QEIR+LR E +EK +Q + + LEE + L+ R+EEE
Sbjct: 134 LRQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEARL 193
Query: 647 REDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXS 826
R+D E + + SL DE+AFL+ H +
Sbjct: 194 RDDTEAAIRALRKDIEESSMVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHIT 253
Query: 827 VEMDVSSKPDLSAALKDIRAQYEKLAAQDM 916
VE K D+S ALK+IR+Q E + Q+M
Sbjct: 254 VERKDYLKTDISTALKEIRSQLECHSDQNM 283
>ref|NP_001124492.1| glial fibrillary acidic protein isoform 1 [Mus musculus].
Length = 428
Score = 127 bits (320), Expect = 9e-30
Identities = 76/205 (37%), Positives = 112/205 (54%)
Frame = +2
Query: 305 LDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHS 484
+D S A++ K R E+A++ +LNDRFAS+IE+V LEQQNK L AEL LR K
Sbjct: 47 VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAK-- 104
Query: 485 EPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEG 664
EP++ +Y+ E+R+LRL + T L+ ER+ + L L+ + ++E R +AE
Sbjct: 105 EPTKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAEN 164
Query: 665 RLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVS 844
L ++SL +EI FL+K++ VEMDV
Sbjct: 165 NLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDV- 223
Query: 845 SKPDLSAALKDIRAQYEKLAAQDMQ 919
+KPDL+AAL++IR QYE +A +MQ
Sbjct: 224 AKPDLTAALREIRTQYEAVATSNMQ 248
>ref|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus musculus].
Length = 430
Score = 127 bits (320), Expect = 9e-30
Identities = 76/205 (37%), Positives = 112/205 (54%)
Frame = +2
Query: 305 LDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHS 484
+D S A++ K R E+A++ +LNDRFAS+IE+V LEQQNK L AEL LR K
Sbjct: 47 VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAK-- 104
Query: 485 EPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEG 664
EP++ +Y+ E+R+LRL + T L+ ER+ + L L+ + ++E R +AE
Sbjct: 105 EPTKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAEN 164
Query: 665 RLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVS 844
L ++SL +EI FL+K++ VEMDV
Sbjct: 165 NLAAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDV- 223
Query: 845 SKPDLSAALKDIRAQYEKLAAQDMQ 919
+KPDL+AAL++IR QYE +A +MQ
Sbjct: 224 AKPDLTAALREIRTQYEAVATSNMQ 248
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 16,330,828
Number of extensions: 301248
Number of successful extensions: 2798
Number of sequences better than 1.0e-05: 79
Number of HSP's gapped: 2604
Number of HSP's successfully gapped: 79
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013782
(920 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006149.2| neurofilament light polypeptide [Homo sapiens]. 346 1e-95
Alignment gi|NP_116116.1| alpha-internexin [Homo sapiens]. 170 2e-42
Alignment gi|NP_001918.3| desmin [Homo sapiens]. 149 3e-36
Alignment gi|NP_003371.2| vimentin [Homo sapiens]. 149 3e-36
Alignment gi|NP_006253.2| peripherin [Homo sapiens]. 144 1e-34
Alignment gi|NP_005373.2| neurofilament medium polypeptide isoform 1 [Hom... 132 4e-31
Alignment gi|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo... 130 2e-30
Alignment gi|NP_001229305.1| glial fibrillary acidic protein isoform 3 [H... 130 2e-30
Alignment gi|NP_001124491.1| glial fibrillary acidic protein isoform 2 [H... 130 2e-30
Alignment gi|NP_002263.3| keratin, type II cytoskeletal 4 [Homo sapiens]. 100 2e-21
>ref|NP_006149.2| neurofilament light polypeptide [Homo sapiens].
Length = 543
Score = 346 bits (888), Expect = 1e-95
Identities = 197/275 (71%), Positives = 201/275 (73%)
Frame = +2
Query: 95 MSSFSYEPYYSTSYKRRYVETPRVHISSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 274
MSSFSYEPYYSTSYKRRYVETPRVHISSV
Sbjct: 1 MSSFSYEPYYSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSS 60
Query: 275 XXXXXXXLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 454
LENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA
Sbjct: 61 SGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEA 120
Query: 455 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 634
ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE
Sbjct: 121 ELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEE 180
Query: 635 EVLSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXX 814
EVLSREDAEGRLM IDSLMDEI+FLKKVH
Sbjct: 181 EVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEISFLKKVHEEEIAELQAQIQY 240
Query: 815 XXXSVEMDVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
SVEMDV +KPDLSAALKDIRAQYEKLAA++MQ
Sbjct: 241 AQISVEMDV-TKPDLSAALKDIRAQYEKLAAKNMQ 274
>ref|NP_116116.1| alpha-internexin [Homo sapiens].
Length = 499
Score = 170 bits (430), Expect = 2e-42
Identities = 96/209 (45%), Positives = 134/209 (64%), Gaps = 2/209 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+ LDLSQ AA +N+ K IRT EK QLQ LNDRFA FIE+VH+LE QN+ LEAEL LRQ+
Sbjct: 73 DGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQR 132
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
H+EPSR L+++E+RDLR E+A++ + ER+GL E ++ L+AR EEE RE A
Sbjct: 133 HAEPSRVGELFQRELRDLRAQLEEASSARSQALLERDGLAEEVQRLRARCEEESRGREGA 192
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L ++SL+DE+AF+++VH + E+
Sbjct: 193 ERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEV 252
Query: 836 DVS-SKPDLSAALKDIRAQYEKLAAQDMQ 919
DV+ +KPDL++AL++IRAQYE LAA+++Q
Sbjct: 253 DVTVAKPDLTSALREIRAQYESLAAKNLQ 281
>ref|NP_001918.3| desmin [Homo sapiens].
Length = 470
Score = 149 bits (377), Expect = 3e-36
Identities = 89/206 (43%), Positives = 123/206 (59%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + RT EK +LQ+LNDRFA++IE+V LEQQN L AE V R K
Sbjct: 87 ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAE--VNRLK 144
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R LYE+E+R+LR E TN++ + ER+ L + L+ L+A+ +EE+ +E+A
Sbjct: 145 GREPTRVAELYEEELRELRRQVEVLTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEA 204
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L I+SL +EIAFLKKVH VEMD
Sbjct: 205 ENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMD 264
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDM 916
+ SKPDL+AAL+DIRAQYE +AA+++
Sbjct: 265 M-SKPDLTAALRDIRAQYETIAAKNI 289
>ref|NP_003371.2| vimentin [Homo sapiens].
Length = 466
Score = 149 bits (376), Expect = 3e-36
Identities = 84/207 (40%), Positives = 125/207 (60%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
+++D S AI+ + K+ RT EK +LQ+LNDRFA++I++V LEQQNK+L AEL L K
Sbjct: 82 DSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQL--K 139
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
SR LYE+E+R+LR + TN+K ++ ER+ L E + L+ + +EE+L RE+A
Sbjct: 140 GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEA 199
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMD 838
E L ++SL +EIAFLKK+H +++D
Sbjct: 200 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVD 259
Query: 839 VSSKPDLSAALKDIRAQYEKLAAQDMQ 919
V SKPDL+AAL+D+R QYE +AA+++Q
Sbjct: 260 V-SKPDLTAALRDVRQQYESVAAKNLQ 285
>ref|NP_006253.2| peripherin [Homo sapiens].
Length = 470
Score = 144 bits (363), Expect = 1e-34
Identities = 88/208 (42%), Positives = 119/208 (57%), Gaps = 1/208 (0%)
Frame = +2
Query: 299 ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 478
E LD S A++ + + R+ EK +LQ+LNDRFA+FIE+V LEQQN L EL R +
Sbjct: 76 ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 135
Query: 479 HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 658
EP+R L +QE+R+LR E E+ +Q ER+GL E L L+ R EEE REDA
Sbjct: 136 --EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDA 193
Query: 659 EGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVH-XXXXXXXXXXXXXXXXSVEM 835
E L+ I+SLMDEI FLKK+H VE+
Sbjct: 194 EHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEV 253
Query: 836 DVSSKPDLSAALKDIRAQYEKLAAQDMQ 919
+ + KP+L+AAL+DIRAQYE +AA+++Q
Sbjct: 254 EATVKPELTAALRDIRAQYESIAAKNLQ 281
>ref|NP_005373.2| neurofilament medium polypeptide isoform 1 [Homo sapiens].
Length = 916
Score = 132 bits (332), Expect = 4e-31
Identities = 80/212 (37%), Positives = 112/212 (52%), Gaps = 7/212 (3%)
Frame = +2
Query: 302 NLDLSQVAAISN-------DLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAEL 460
+LD SQ +++ N D K R+ EK QLQ LNDRFA +IE+VH LEQQNK +EAE+
Sbjct: 74 SLDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEI 133
Query: 461 LVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEV 640
LRQK + ++ Y+QEIR+LR E +EK +Q + + LEE + L+ R+EEE
Sbjct: 134 QALRQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEA 193
Query: 641 LSREDAEGRLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXX 820
R+D E + + SL DE+AFL+ H
Sbjct: 194 RLRDDTEAAIRALRKDIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASH 253
Query: 821 XSVEMDVSSKPDLSAALKDIRAQYEKLAAQDM 916
+VE K D+S ALK+IR+Q E + Q+M
Sbjct: 254 ITVERKDYLKTDISTALKEIRSQLESHSDQNM 285
>ref|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo sapiens].
Length = 432
Score = 130 bits (326), Expect = 2e-30
Identities = 77/204 (37%), Positives = 113/204 (55%)
Frame = +2
Query: 305 LDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHS 484
+D S A++ K R E+A++ +LNDRFAS+IE+V LEQQNK L AEL LR K
Sbjct: 50 VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAK-- 107
Query: 485 EPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEG 664
EP++ +Y+ E+R+LRL + T L+ ER+ L + L ++ + ++E R +AE
Sbjct: 108 EPTKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAEN 167
Query: 665 RLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVS 844
L I+SL +EI FL+K+H VE+DV
Sbjct: 168 NLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDV- 226
Query: 845 SKPDLSAALKDIRAQYEKLAAQDM 916
+KPDL+AALK+IR QYE +A+ +M
Sbjct: 227 AKPDLTAALKEIRTQYEAMASSNM 250
>ref|NP_001229305.1| glial fibrillary acidic protein isoform 3 [Homo sapiens].
Length = 438
Score = 130 bits (326), Expect = 2e-30
Identities = 77/204 (37%), Positives = 113/204 (55%)
Frame = +2
Query: 305 LDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHS 484
+D S A++ K R E+A++ +LNDRFAS+IE+V LEQQNK L AEL LR K
Sbjct: 50 VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAK-- 107
Query: 485 EPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEG 664
EP++ +Y+ E+R+LRL + T L+ ER+ L + L ++ + ++E R +AE
Sbjct: 108 EPTKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAEN 167
Query: 665 RLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVS 844
L I+SL +EI FL+K+H VE+DV
Sbjct: 168 NLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDV- 226
Query: 845 SKPDLSAALKDIRAQYEKLAAQDM 916
+KPDL+AALK+IR QYE +A+ +M
Sbjct: 227 AKPDLTAALKEIRTQYEAMASSNM 250
>ref|NP_001124491.1| glial fibrillary acidic protein isoform 2 [Homo sapiens].
Length = 431
Score = 130 bits (326), Expect = 2e-30
Identities = 77/204 (37%), Positives = 113/204 (55%)
Frame = +2
Query: 305 LDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHS 484
+D S A++ K R E+A++ +LNDRFAS+IE+V LEQQNK L AEL LR K
Sbjct: 50 VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAK-- 107
Query: 485 EPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEG 664
EP++ +Y+ E+R+LRL + T L+ ER+ L + L ++ + ++E R +AE
Sbjct: 108 EPTKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAEN 167
Query: 665 RLMXXXXXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVS 844
L I+SL +EI FL+K+H VE+DV
Sbjct: 168 NLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDV- 226
Query: 845 SKPDLSAALKDIRAQYEKLAAQDM 916
+KPDL+AALK+IR QYE +A+ +M
Sbjct: 227 AKPDLTAALKEIRTQYEAMASSNM 250
>ref|NP_002263.3| keratin, type II cytoskeletal 4 [Homo sapiens].
Length = 520
Score = 100 bits (249), Expect = 2e-21
Identities = 60/194 (30%), Positives = 103/194 (53%), Gaps = 2/194 (1%)
Frame = +2
Query: 329 ISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPS--RFR 502
I +++ +RT+E+ Q++ LN++FASFI++V LEQQNKVLE + +L+Q+ + S
Sbjct: 126 IDPEIQKVRTEEREQIKLLNNKFASFIDKVQFLEQQNKVLETKWNLLQQQTTTTSSKNLE 185
Query: 503 ALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMXXX 682
L+E + LR + N+K LQ E + +++++ + + +YEEE+ R AE +
Sbjct: 186 PLFETYLSVLRKQLDTLGNDKGRLQSELKTMQDSVEDFKTKYEEEINKRTAAENDFVVLK 245
Query: 683 XXXXXXXXXXXXXXXXIDSLMDEIAFLKKVHXXXXXXXXXXXXXXXXSVEMDVSSKPDLS 862
+DSL DEI FLK ++ + MD + DL
Sbjct: 246 KDVDAAYLNKVELEAKVDSLNDEINFLKVLYDAELSQMQTHVSDTSVVLSMDNNRNLDLD 305
Query: 863 AALKDIRAQYEKLA 904
+ + ++RAQYE++A
Sbjct: 306 SIIAEVRAQYEEIA 319
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 19,393,966
Number of extensions: 364951
Number of successful extensions: 2887
Number of sequences better than 1.0e-05: 75
Number of HSP's gapped: 2743
Number of HSP's successfully gapped: 75
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013782
(920 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1667 0.0
Sscrofa_Chr05 58 9e-06
>Sscrofa_Chr14
|| Length = 153851969
Score = 1667 bits (841), Expect = 0.0
Identities = 841/841 (100%)
Strand = Plus / Plus
Query: 67 gccgggcagaggggcaccgaccgccaccatgagttccttcagctacgagccgtactactc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10087558 gccgggcagaggggcaccgaccgccaccatgagttccttcagctacgagccgtactactc 10087617
Query: 127 gacctcctacaaacgccgctatgtggagacgccccgggtgcacatctccagcgtgcgcag 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10087618 gacctcctacaaacgccgctatgtggagacgccccgggtgcacatctccagcgtgcgcag 10087677
Query: 187 cggctacagcaccgcgcgctctgcttactccagctactccgcgcccgtctcctcctcgct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10087678 cggctacagcaccgcgcgctctgcttactccagctactccgcgcccgtctcctcctcgct 10087737
Query: 247 gtccgtgcgccgcagctactcctccagctccggctccttgatgcccagtctcgagaacct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10087738 gtccgtgcgccgcagctactcctccagctccggctccttgatgcccagtctcgagaacct 10087797
Query: 307 cgacctgagccaggtagccgccatcagcaacgacctcaagtcgatccgcacacaggagaa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10087798 cgacctgagccaggtagccgccatcagcaacgacctcaagtcgatccgcacacaggagaa 10087857
Query: 367 ggcgcagctgcaggacctcaacgaccgctttgccagcttcatcgagcgcgtgcacgagtt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10087858 ggcgcagctgcaggacctcaacgaccgctttgccagcttcatcgagcgcgtgcacgagtt 10087917
Query: 427 ggagcagcagaacaaggtcctggaagccgagctgctggtgctgcgccagaagcactccga 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10087918 ggagcagcagaacaaggtcctggaagccgagctgctggtgctgcgccagaagcactccga 10087977
Query: 487 gccgtcccgcttccgggcgctgtacgagcaggagatccgtgacctgcgcctggcggcgga 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10087978 gccgtcccgcttccgggcgctgtacgagcaggagatccgtgacctgcgcctggcggcgga 10088037
Query: 547 agacgccaccaacgagaagcaggcgctccagggcgagcgcgaggggctggaggagactct 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10088038 agacgccaccaacgagaagcaggcgctccagggcgagcgcgaggggctggaggagactct 10088097
Query: 607 gcgcaacctgcaagcgcgctacgaagaggaggtgctgagccgcgaggacgccgagggccg 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10088098 gcgcaacctgcaagcgcgctacgaagaggaggtgctgagccgcgaggacgccgagggccg 10088157
Query: 667 gctgatggaagcgcgcaaaggggccgacgaggcggctctcgcccgcgccgagctcgaaaa 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10088158 gctgatggaagcgcgcaaaggggccgacgaggcggctctcgcccgcgccgagctcgaaaa 10088217
Query: 727 gcgcattgacagtctgatggacgaaatcgcctttctgaagaaagtgcacgaagaggagat 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10088218 gcgcattgacagtctgatggacgaaatcgcctttctgaagaaagtgcacgaagaggagat 10088277
Query: 787 cgccgagctgcaggctcagatccagtacgcgcagatctccgtggagatggatgtgtcctc 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10088278 cgccgagctgcaggctcagatccagtacgcgcagatctccgtggagatggatgtgtcctc 10088337
Query: 847 caagcccgacctctccgccgcgctcaaggacatccgcgcccagtatgagaagctggccgc 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10088338 caagcccgacctctccgccgcgctcaaggacatccgcgcccagtatgagaagctggccgc 10088397
Query: 907 c 907
|
Sbjct: 10088398 c 10088398
>Sscrofa_Chr05
|| Length = 111506441
Score = 58.0 bits (29), Expect = 9e-06
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 372 agctgcaggacctcaacgaccgctttgccagcttcatcgag 412
|||||||||| |||||||||||||| |||| ||||||||||
Sbjct: 15692071 agctgcaggagctcaacgaccgcttcgccaacttcatcgag 15692111
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,161,029
Number of extensions: 77
Number of successful extensions: 77
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 920
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 899
Effective length of database: 2,808,413,156
Effective search space: 2524763427244
Effective search space used: 2524763427244
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)