Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013788
(1054 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039847.1| U5 small nuclear ribonucleoprotein 40 kDa pr... 602 e-172
Alignment gi|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus]. 154 2e-37
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 149 4e-36
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 125 5e-29
Alignment gi|NP_001178318.1| autophagy-related protein 16-1 [Bos taurus]. 119 6e-27
Alignment gi|XP_002686606.1| PREDICTED: ATG16 autophagy related 16-like 1... 119 6e-27
Alignment gi|XP_002686605.1| PREDICTED: ATG16 autophagy related 16-like 1... 119 6e-27
Alignment gi|XP_877095.3| PREDICTED: ATG16 autophagy related 16-like 1 (S... 119 6e-27
Alignment gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus]. 117 2e-26
Alignment gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru... 115 5e-26
>ref|NP_001039847.1| U5 small nuclear ribonucleoprotein 40 kDa protein [Bos taurus].
Length = 358
Score = 602 bits (1552), Expect = e-172
Identities = 295/340 (86%), Positives = 298/340 (87%)
Frame = +1
Query: 34 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213
MIEQQKRKGPELPLVPVKRQRHE RCSSLQAPI
Sbjct: 1 MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI 60
Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 181 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
NAMDNTVRVWDVRPFAPKERCV+IFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 241 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKNLLRCSWSPDGSK 300
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPDK 1053
IAAGSADRFVYVW+ TSRRILYKLPGHAGSINEVAFHPD+
Sbjct: 301 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 340
>ref|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus].
Length = 330
Score = 154 bits (388), Expect = 2e-37
Identities = 93/279 (33%), Positives = 146/279 (52%), Gaps = 3/279 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L GH V KF PNG LAS+ D++I++W Y D TLKGH+ + ++ +++D
Sbjct: 37 LEGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAY-DGKYEKTLKGHNLEISDVAWSSDS 95
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 579
S L SAS DKT+ +WD +G+ +K LKGH+++V C L+ +GS D +VK+W++
Sbjct: 96 SRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYV-FCCNFNPPSNLIISGSFDESVKIWEV 154
Query: 580 RKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK-LTYTMRGHADSVT 753
+ ++T ++ V AV FN + I+SG D ++WD + L + V+
Sbjct: 155 KTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQCLKALVDDDNPPVS 214
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
+DNT+++WD + RC+K + G H EK + S+S G K
Sbjct: 215 FVKFSPNGKYILIATLDNTLKLWDY----SRGRCLKTYTG--HKNEKYCVFASFSVTGGK 268
Query: 934 -IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
I +GS D VY+W ++ I+ KL GH + A HP
Sbjct: 269 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHP 307
Score = 77.4 bits (189), Expect = 2e-14
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 49/208 (23%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
L GH V+CC F+P + + S FD + +W V G C TL HS V +H+N
Sbjct: 121 LKGHSNYVFCCNFNPPSNLIISGSFDESVKIWEVKTGKC--LKTLSAHSDPVSAVHFNCS 178
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRL--------------------------------- 477
GS++ S S D +WD+ +G+ +K L
Sbjct: 179 GSLIVSGSYDGVCRIWDAASGQCLKALVDDDNPPVSFVKFSPNGKYILIATLDNTLKLWD 238
Query: 478 -------KGHTSFVNSCYP-----ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
K +T N Y + G + + +GS+D V +W+++ K +Q Q +T
Sbjct: 239 YSRGRCLKTYTGHKNEKYCVFASFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 298
Query: 619 QVLAVTFNDTSDQIISGGIDND--IKVW 696
V++ + T + I S + ND +K+W
Sbjct: 299 VVISAACHPTENIIASAALGNDKTVKLW 326
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 149 bits (376), Expect = 4e-36
Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 5/281 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156
Query: 574 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 748 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927
V+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270
Query: 928 SK-IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
K I +GS D VY+W ++ I+ KL GH + A HP
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 82.4 bits (202), Expect = 6e-16
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 49/208 (23%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRL--------------------------------- 477
GS++ S+S D +WD+ +G+ +K L
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 478 -------KGHTSFVNSCYP-----ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
K +T N Y + G + + +GS+D V +W+++ K +Q Q +T
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 619 QVLAVTFNDTSDQIISGGIDND--IKVW 696
V++ + T + I S ++ND IK+W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 63.9 bits (154), Expect = 2e-10
Identities = 36/147 (24%), Positives = 67/147 (45%)
Frame = +1
Query: 610 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789
+T V +V F+ + + S D IK+W K T+ GH ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 790 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969
+ D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 970 WEYTSRRILYKLPGHAGSINEVAFHPD 1050
W+ + + L LP H+ ++ V F+ D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRD 182
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 125 bits (315), Expect = 5e-29
Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 2/263 (0%)
Frame = +1
Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 441
+GS + +DR LW+ + TL+GH V + +N G + + S DKT +
Sbjct: 103 SGSCFITGSYDRTCKLWDTASG-EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 161
Query: 442 WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
W ETG+ +GHT+ + C LV TGS D T KLWDI+ + T ++
Sbjct: 162 WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSA 220
Query: 619 QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 798
++++++FN + ++II+G D+ + VW+ + YT+ GH ++ +
Sbjct: 221 EIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGS 280
Query: 799 MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWEY 978
MD T ++WD A +CV G+ + +L + G IA SAD ++
Sbjct: 281 MDKTCKLWD----AVNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIFSA 332
Query: 979 TSRRILYKLPGHAGSINEVAFHP 1047
+R + KL GH G I++++F+P
Sbjct: 333 ATRECVTKLEGHEGEISKISFNP 355
Score = 125 bits (314), Expect = 6e-29
Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 3/278 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393
L GH VY F+ P G +A+ FD+ LW+V G C Y T +GH+ ++ L +N
Sbjct: 130 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 187
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
+++ + S D T +WD ++GE V L GH++ + S G +++ TGS D TV +W
Sbjct: 188 QSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRII-TGSFDHTVTVW 246
Query: 574 DIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750
+ + T + ++ + FN I++G +D K+WD K T+ GH D +
Sbjct: 247 EADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEI 306
Query: 751 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930
+ D T R++ A CV +G+ E + + S++P G+
Sbjct: 307 LDSCFDYTGKLIATASADGTARIFS----AATRECVTKLEGH----EGEISKISFNPQGN 358
Query: 931 KIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFH 1044
++ GS+D+ +W+ + + L L GH I AF+
Sbjct: 359 RLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFN 396
Score = 113 bits (282), Expect = 3e-25
Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%)
Frame = +1
Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
GH E+ C F+P + +A+ D LW++ + TL GHS ++ L +NT G+
Sbjct: 175 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSG-EEVFTLTGHSAEIISLSFNTSGNR 233
Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD-IR 582
+ + S D TV VW+++TG +V L GH + ++S L+ TGS D T KLWD +
Sbjct: 234 IITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAV-FNWDCSLILTGSMDKTCKLWDAVN 292
Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
K + ++L F+ T I + D +++ + + GH ++
Sbjct: 293 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKIS 352
Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
+ D T R+WD A +C+++ +G+ + C+++ G I
Sbjct: 353 FNPQGNRLLTGSSDKTARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGDIIIT 404
Query: 943 GSADRFVYVW 972
GS D +W
Sbjct: 405 GSKDNTCRIW 414
Score = 98.6 bits (244), Expect = 8e-21
Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 2/206 (0%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390
+ L+GH E+ F+ +G+ + + FD + +W Y TL GH + +N
Sbjct: 212 VFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVY-TLIGHCAEISSAVFN 270
Query: 391 TDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDGTVK 567
D S++ + S DKT +WD+ G+ V L GH ++SC+ +L+ T S DGT +
Sbjct: 271 WDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYT--GKLIATASADGTAR 328
Query: 568 LWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
++ + + + + ++ ++FN +++++G D ++WD + + + GH D
Sbjct: 329 IFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTD 388
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVW 822
+ + DNT R+W
Sbjct: 389 EIFSCAFNYKGDIIITGSKDNTCRIW 414
Score = 84.0 bits (206), Expect = 2e-16
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 2/172 (1%)
Frame = +1
Query: 541 TGSDDGTVKLWDIRKKAAIQTFQNTYQVL-AVTFNDT-SDQIISGGIDNDIKVWDLRQNK 714
TGS D T KLWD + T + V+ A+ FN+ D+I +G D K+W + K
Sbjct: 109 TGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGK 168
Query: 715 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894
+T RGH + +MD T ++WD++ ++F H+ E
Sbjct: 169 CYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGE------EVFTLTGHSAE- 221
Query: 895 NLLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
++ S++ G++I GS D V VWE + R +Y L GH I+ F+ D
Sbjct: 222 -IISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWD 272
>ref|NP_001178318.1| autophagy-related protein 16-1 [Bos taurus].
Length = 607
Score = 119 bits (297), Expect = 6e-27
Identities = 82/282 (29%), Positives = 132/282 (46%), Gaps = 5/282 (1%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 317 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 376
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 377 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435
Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 436 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 489
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 490 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 545
Query: 925 GSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
GS +AAG+A+ +Y+W S ++ L H+ SIN VA+ P
Sbjct: 546 GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 587
>ref|XP_002686606.1| PREDICTED: ATG16 autophagy related 16-like 1 (S. cerevisiae) isoform
2 [Bos taurus].
Length = 607
Score = 119 bits (297), Expect = 6e-27
Identities = 82/282 (29%), Positives = 132/282 (46%), Gaps = 5/282 (1%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 317 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 376
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 377 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435
Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 436 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 489
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 490 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 545
Query: 925 GSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
GS +AAG+A+ +Y+W S ++ L H+ SIN VA+ P
Sbjct: 546 GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 587
>ref|XP_002686605.1| PREDICTED: ATG16 autophagy related 16-like 1 (S. cerevisiae) isoform
1 [Bos taurus].
Length = 588
Score = 119 bits (297), Expect = 6e-27
Identities = 82/282 (29%), Positives = 132/282 (46%), Gaps = 5/282 (1%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 298 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 357
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 358 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 416
Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 417 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 470
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 471 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 526
Query: 925 GSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
GS +AAG+A+ +Y+W S ++ L H+ SIN VA+ P
Sbjct: 527 GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 568
>ref|XP_877095.3| PREDICTED: ATG16 autophagy related 16-like 1 (S. cerevisiae) isoform
5 [Bos taurus].
Length = 588
Score = 119 bits (297), Expect = 6e-27
Identities = 82/282 (29%), Positives = 132/282 (46%), Gaps = 5/282 (1%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 298 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 357
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 358 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 416
Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 417 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 470
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 471 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRAVFSPD 526
Query: 925 GSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
GS +AAG+A+ +Y+W S ++ L H+ SIN VA+ P
Sbjct: 527 GSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSP 568
>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
Length = 296
Score = 117 bits (292), Expect = 2e-26
Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 1/232 (0%)
Frame = +1
Query: 358 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537
H G V ++ DG L +AS D V W++++G + RL+GH V C + G +L
Sbjct: 20 HRGEVNSSAFSPDGQRLLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDG-RLF 78
Query: 538 CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 714
+ S D T++LWD +Q + + V V+F+ S Q+ SGG D + +W+++ +
Sbjct: 79 ASTSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQ 138
Query: 715 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894
+ GH DSV + D+T+R+WD+R P IF +
Sbjct: 139 VLRHFVGHRDSVQSSDFAPSSDCLATGSWDSTIRMWDLRAGTP-----GIFHQELEGHRG 193
Query: 895 NLLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
N+ +SP G +A+GS D+ +++W+ ++R +L +L GH + +AF PD
Sbjct: 194 NISCLCYSPSG-LLASGSWDKTIHIWKPSTRSLLIQLKGHITWVKSIAFSPD 244
Score = 96.3 bits (238), Expect = 4e-20
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 5/250 (2%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L GH+G V C+F P+G AS DR I LW+ D LKGH +V + ++ D
Sbjct: 59 LRGHKGPVRFCRFSPDGRLFASTSCDRTIRLWDA-TDAKCLQVLKGHQRSVETVSFSHDS 117
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 579
L S DK V +W+ ++G+ ++ GH V S A + TGS D T+++WD+
Sbjct: 118 KQLASGGWDKRVMLWEVQSGQVLRHFVGHRDSVQSSDFA-PSSDCLATGSWDSTIRMWDL 176
Query: 580 RKKAA---IQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750
R Q + ++ S + SG D I +W L ++GH V
Sbjct: 177 RAGTPGIFHQELEGHRGNISCLCYSPSGLLASGSWDKTIHIWKPSTRSLLIQLKGHITWV 236
Query: 751 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQG--NVHNFEKNLLRCSWSPD 924
+ V+VWD +C + +G NV + C++ PD
Sbjct: 237 KSIAFSPDGQQLASAGYSHMVKVWDCN----TGKCTETLKGVLNVAH------ACAFMPD 286
Query: 925 GSKIAAGSAD 954
G + +G+ D
Sbjct: 287 GKLLVSGAVD 296
Score = 94.4 bits (233), Expect = 2e-19
Identities = 71/278 (25%), Positives = 122/278 (43%), Gaps = 4/278 (1%)
Frame = +1
Query: 229 HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML 408
H GEV F P+G L +A D + W + L+GH G V ++ DG +
Sbjct: 20 HRGEVNSSAFSPDGQRLLTASEDGCVYGWETQSGRLLWR-LRGHKGPVRFCRFSPDGRLF 78
Query: 409 FSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKK 588
S S D+T+ +WD+ + ++ LKGH V + + QL +G D V LW+++
Sbjct: 79 ASTSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQL-ASGGWDKRVMLWEVQSG 137
Query: 589 AAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK---LTYTMRGHADSVTX 756
++ F + V + F +SD + +G D+ I++WDLR + GH +++
Sbjct: 138 QVLRHFVGHRDSVQSSDFAPSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNIS- 196
Query: 757 XXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKI 936
+ D T+ +W P R + I + K++ ++SPDG ++
Sbjct: 197 CLCYSPSGLLASGSWDKTIHIW-----KPSTRSLLIQLKGHITWVKSI---AFSPDGQQL 248
Query: 937 AAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
A+ V VW+ + + L G + AF PD
Sbjct: 249 ASAGYSHMVKVWDCNTGKCTETLKGVLNVAHACAFMPD 286
Score = 73.6 bits (179), Expect = 3e-13
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 5/180 (2%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390
+ +L GH+ V F + LAS G+D+ ++LW V GH +V +
Sbjct: 98 LQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSG-QVLRHFVGHRDSVQSSDFA 156
Query: 391 TDGSMLFSASTDKTVAVWDSETGER---VKRLKGHTSFVNS-CYPARRGPQLVCTGSDDG 558
L + S D T+ +WD G + L+GH ++ CY L+ +GS D
Sbjct: 157 PSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSP---SGLLASGSWDK 213
Query: 559 TVKLW-DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 735
T+ +W + IQ + V ++ F+ Q+ S G + +KVWD K T T++G
Sbjct: 214 TIHIWKPSTRSLLIQLKGHITWVKSIAFSPDGQQLASAGYSHMVKVWDCNTGKCTETLKG 273
>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
Length = 407
Score = 115 bits (289), Expect = 5e-26
Identities = 82/273 (30%), Positives = 120/273 (43%), Gaps = 1/273 (0%)
Frame = +1
Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
GH V F N LAS D +++W++ Y GH AV ++++ G +
Sbjct: 17 GHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYR-FAGHKDAVTCVNFSPSGHL 75
Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
L S S DKTV +W + HT+ V S + G V T SDD TVK+W R
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFV-TASDDKTVKVWSTHR 134
Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
+K Q+ V F+ I+S D +K+WD + ++ H VT
Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVD 194
Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
MDNTV+VWDVR R ++ +Q +H+ N L S+ P G+ +
Sbjct: 195 FHPSGTCIAAAGMDNTVKVWDVR----THRLLQHYQ--LHSAAVNAL--SFHPSGNYLVT 246
Query: 943 GSADRFVYVWEYTSRRILYKLPGHAGSINEVAF 1041
S+D + + + R+LY L GH G VAF
Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279
Score = 108 bits (269), Expect = 1e-23
Identities = 70/254 (27%), Positives = 123/254 (48%), Gaps = 3/254 (1%)
Frame = +1
Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396
+GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D
Sbjct: 58 AGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
G +AS DKTV VW + + + L H ++V C +L+ + SDD TVKLWD
Sbjct: 115 GQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173
Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
+ + ++ ++ V V F+ + I + G+DN +KVWD+R ++L + H+ +V
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN 233
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
+ D+T+++ D+ + R + +H + ++S G
Sbjct: 234 ALSFHPSGNYLVTASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285
Query: 934 IAAGSADRFVYVWE 975
A+G +D V VW+
Sbjct: 286 FASGGSDEQVMVWK 299
Score = 90.5 bits (223), Expect = 2e-18
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 4/236 (1%)
Frame = +1
Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
KGH AV + ++ + L S S D + VW + R R GH V +C
Sbjct: 16 KGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAV-TCVNFSPSGH 74
Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
L+ +GS D TV++W K F+ +T V +V F ++ D +KVW +
Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHR 134
Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888
K +++ H + V + D TV++WD K + VH++
Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KTSRECVHSY 183
Query: 889 EKN---LLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
++ + + P G+ IAA D V VW+ + R+L H+ ++N ++FHP
Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHP 239
Score = 75.9 bits (185), Expect = 6e-14
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381
LS H V C KF P+G + SA D+ + LW+ V+ C+ H G V +
Sbjct: 141 LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE-------HGGFVTYV 193
Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
++ G+ + +A D TV VWD T ++ + H++ VN+ G LV T S D T
Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLV-TASSDST 252
Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696
+K+ D+ + + T + V F+ T + SGG D + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,548,717
Number of extensions: 997335
Number of successful extensions: 5595
Number of sequences better than 1.0e-05: 169
Number of HSP's gapped: 3846
Number of HSP's successfully gapped: 438
Length of query: 351
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,273,310
Effective search space: 3539780880
Effective search space used: 3539780880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013788
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013788
(1054 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Can... 603 e-173
Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 139 3e-33
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiar... 129 4e-30
Alignment gi|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like... 118 1e-26
Alignment gi|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like... 118 1e-26
Alignment gi|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like... 118 1e-26
Alignment gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof... 117 2e-26
Alignment gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can... 110 3e-24
Alignment gi|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containi... 106 4e-23
Alignment gi|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containi... 106 4e-23
>ref|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Canis familiaris].
Length = 358
Score = 603 bits (1555), Expect = e-173
Identities = 296/340 (87%), Positives = 298/340 (87%)
Frame = +1
Query: 34 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213
MIEQQKRKGPELPLVPVKRQRHE RCSSLQAPI
Sbjct: 1 MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQTAPGALLQAGPPRCSSLQAPI 60
Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 181 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 241 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPDK 1053
IAAGSADRFVYVW+ TSRRILYKLPGHAGSINEVAFHPD+
Sbjct: 301 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 340
>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
Length = 334
Score = 139 bits (351), Expect = 3e-33
Identities = 89/281 (31%), Positives = 142/281 (50%), Gaps = 5/281 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156
Query: 574 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDI-KVWDLRQNKLTYTMRGHADS 747
D++ ++T ++ V AV FN I+S D K + + +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPP 216
Query: 748 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927
V+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270
Query: 928 SK-IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
K I +GS D VY+W ++ I+ KL GH + A HP
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 79.0 bits (193), Expect = 7e-15
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 49/208 (23%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182
Query: 397 GSMLFSAS-------------------------------------------TDKTVAVWD 447
GS++ S+S D T+ +WD
Sbjct: 183 GSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 448 SETGERVKRLKGHTSFVNSCYP--ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
G+ +K GH + + + G + + +GS+D V +W+++ K +Q Q +T
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 619 QVLAVTFNDTSDQIISGGIDND--IKVW 696
V++ + T + I S ++ND IK+W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 63.9 bits (154), Expect = 2e-10
Identities = 36/147 (24%), Positives = 67/147 (45%)
Frame = +1
Query: 610 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789
+T V +V F+ + + S D IK+W K T+ GH ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 790 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969
+ D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 970 WEYTSRRILYKLPGHAGSINEVAFHPD 1050
W+ + + L LP H+ ++ V F+ D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Score = 57.0 bits (136), Expect = 3e-08
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Frame = +1
Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN- 390
++L V KF PNG + +A D + LW+ Y T GH + N
Sbjct: 208 LILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-YSKGKCLKTYTGHKNEKYCIFANF 266
Query: 391 --TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFV--NSCYPARRGPQLVCTGS--D 552
T G + S S D V +W+ +T E V++L+GHT V +C+P ++ + + +
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE---NIIASAALEN 323
Query: 553 DGTVKLW 573
D T+KLW
Sbjct: 324 DKTIKLW 330
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris].
Length = 415
Score = 129 bits (325), Expect = 4e-30
Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 2/263 (0%)
Frame = +1
Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 441
+GS + +DR LW+ + TL+GH V + +N G + + S DKT +
Sbjct: 103 SGSCFITGSYDRTCKLWDTASG-EELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 161
Query: 442 WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
W ETG+ +GHT+ + C LV TGS D T KLWDI+ + T + ++
Sbjct: 162 WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSA 220
Query: 619 QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 798
++++++FN + D+I++G D+ + VW+ + YT+ GH ++ +
Sbjct: 221 EIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGS 280
Query: 799 MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWEY 978
MD T +WD A +CV G+ + +L + G IA SAD V+
Sbjct: 281 MDKTCMLWD----ASNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARVFSA 332
Query: 979 TSRRILYKLPGHAGSINEVAFHP 1047
+R+ L KL GH G I++++F+P
Sbjct: 333 ATRKCLTKLEGHEGEISKISFNP 355
Score = 125 bits (315), Expect = 5e-29
Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 3/278 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393
L GH VY F+ P G +A+ FD+ LW+V G C Y T +GH+ ++ L +N
Sbjct: 130 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 187
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
+++ + S D T +WD ++GE V L+GH++ + S G ++V TGS D TV +W
Sbjct: 188 QSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIV-TGSFDHTVAVW 246
Query: 574 DIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750
+ + T + ++ + FN I++G +D +WD K T+ GH D +
Sbjct: 247 EADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEI 306
Query: 751 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930
+ D T RV+ A +C+ +G+ E + + S++P G+
Sbjct: 307 LDSCFDYTGKLIATASADGTARVFS----AATRKCLTKLEGH----EGEISKISFNPQGN 358
Query: 931 KIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFH 1044
++ GSAD +W+ + + L L GH I AF+
Sbjct: 359 RLLTGSADETARIWDAQTGQCLQVLEGHTDEIFSCAFN 396
Score = 115 bits (287), Expect = 9e-26
Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 1/250 (0%)
Frame = +1
Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
GH E+ C F+P + +A+ D LW++ + TL+GHS ++ L +NT G
Sbjct: 175 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSG-EEVFTLRGHSAEIISLSFNTSGDR 233
Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 585
+ + S D TVAVW+++TG +V L GH + ++S L+ TGS D T LWD
Sbjct: 234 IVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSAL-FNWDCSLILTGSMDKTCMLWDASN 292
Query: 586 KAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
+ T + ++L F+ T I + D +V+ K + GH ++
Sbjct: 293 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKIS 352
Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
+ D T R+WD A +C+++ +G+ + C+++ G I
Sbjct: 353 FNPQGNRLLTGSADETARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGDIIIT 404
Query: 943 GSADRFVYVW 972
GS D +W
Sbjct: 405 GSKDNTCRIW 414
Score = 98.2 bits (243), Expect = 1e-20
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 2/206 (0%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390
+ L GH E+ F+ +G + + FD + +W Y TL GH + +N
Sbjct: 212 VFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVY-TLIGHCAEISSALFN 270
Query: 391 TDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDGTVK 567
D S++ + S DKT +WD+ G+ V L GH ++SC+ +L+ T S DGT +
Sbjct: 271 WDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYT--GKLIATASADGTAR 328
Query: 568 LWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
++ + + + + ++ ++FN +++++G D ++WD + + + GH D
Sbjct: 329 VFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVLEGHTD 388
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVW 822
+ + DNT R+W
Sbjct: 389 EIFSCAFNYKGDIIITGSKDNTCRIW 414
Score = 84.0 bits (206), Expect = 2e-16
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 12/227 (5%)
Frame = +1
Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP----------QLVCTGSDD 555
L +AS + V + +++++ HT ++ A P TGS D
Sbjct: 54 LITASRSEQVKLLIQRLQDKLRQHSNHTFYLFKVLRAHILPLTNVALNKSGSCFITGSYD 113
Query: 556 GTVKLWDIRKKAAIQTFQNTYQVL-AVTFNDT-SDQIISGGIDNDIKVWDLRQNKLTYTM 729
T KLWD + T + V+ A+ FN+ D+I +G D K+W + K +T
Sbjct: 114 RTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTF 173
Query: 730 RGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC 909
RGH + +MD T ++WD++ ++F H+ E ++
Sbjct: 174 RGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGE------EVFTLRGHSAE--IISL 225
Query: 910 SWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
S++ G +I GS D V VWE + R +Y L GH I+ F+ D
Sbjct: 226 SFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWD 272
>ref|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
3 [Canis familiaris].
Length = 623
Score = 118 bits (295), Expect = 1e-26
Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 5/282 (1%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 333 IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 392
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 393 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 451
Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 452 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 505
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 506 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 561
Query: 925 GSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
G +AAGSA+ +Y+W S ++ L H SIN VA+ P
Sbjct: 562 GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSP 603
>ref|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
1 [Canis familiaris].
Length = 588
Score = 118 bits (295), Expect = 1e-26
Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 5/282 (1%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 298 IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 357
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 358 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 416
Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 417 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 470
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 471 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 526
Query: 925 GSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
G +AAGSA+ +Y+W S ++ L H SIN VA+ P
Sbjct: 527 GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSP 568
>ref|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform
2 [Canis familiaris].
Length = 607
Score = 118 bits (295), Expect = 1e-26
Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 5/282 (1%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+ H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +++
Sbjct: 317 IFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDS 376
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
GS L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 377 AGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435
Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 436 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-LLG 489
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
+T + D+ +++ D+R A ++ F + R +SPD
Sbjct: 490 KITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSAPGFKCGSDWTRVVFSPD 545
Query: 925 GSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
G +AAGSA+ +Y+W S ++ L H SIN VA+ P
Sbjct: 546 GGYVAAGSAEGSLYIWSVLSGKVEKVLSKQHGSSINAVAWSP 587
>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
familiaris].
Length = 406
Score = 117 bits (292), Expect = 2e-26
Identities = 82/273 (30%), Positives = 122/273 (44%), Gaps = 1/273 (0%)
Frame = +1
Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
GH + F N LAS D +++W++ Y GH AV ++++ G +
Sbjct: 17 GHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYR-FAGHKDAVTCVNFSPSGHL 75
Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
L S S DKTV +W + HT+ V S + G LV T SDD TVK+W R
Sbjct: 76 LASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLV-TASDDKTVKVWSTHR 134
Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
+K Q+ V F+ I+S D +K+WD + ++ H VT
Sbjct: 135 QKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVD 194
Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
+MDNTV+VWDVR R ++ +Q +H+ N L S+ P G+ +
Sbjct: 195 FHPSGTCIAAASMDNTVKVWDVR----THRLLQHYQ--LHSAAVNAL--SFHPSGNYLLT 246
Query: 943 GSADRFVYVWEYTSRRILYKLPGHAGSINEVAF 1041
S+D + + + R+LY L GH G VAF
Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279
Score = 107 bits (266), Expect = 2e-23
Identities = 70/254 (27%), Positives = 123/254 (48%), Gaps = 3/254 (1%)
Frame = +1
Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396
+GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D
Sbjct: 58 AGHKDAVTCVNFSPSGHLLASGSRDKTVRIWIPNVKGES---TVFRAHTATVRSVHFCSD 114
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
G L +AS DKTV VW + + + L H ++V C +L+ + SDD TVKLWD
Sbjct: 115 GQSLVTASDDKTVKVWSTHRQKFLFSLSQHINWVR-CARFSPDGRLIVSASDDKTVKLWD 173
Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
+ + ++ ++ V V F+ + I + +DN +KVWD+R ++L + H+ +V
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVN 233
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
+ D+T+++ D+ + R + +H + ++S G
Sbjct: 234 ALSFHPSGNYLLTASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285
Query: 934 IAAGSADRFVYVWE 975
A+G +D V VW+
Sbjct: 286 FASGGSDEQVMVWK 299
Score = 92.8 bits (229), Expect = 5e-19
Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 4/236 (1%)
Frame = +1
Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
KGH A+ + ++ + L S S D + VW + R R GH V +C
Sbjct: 16 KGHRDAITSVDFSLNTKQLASGSMDSCLMVWHMKPQSRAYRFAGHKDAV-TCVNFSPSGH 74
Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
L+ +GS D TV++W K F+ +T V +V F +++ D +KVW +
Sbjct: 75 LLASGSRDKTVRIWIPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHR 134
Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888
K +++ H + V + D TV++WD K + VH++
Sbjct: 135 QKFLFSLSQHINWVRCARFSPDGRLIVSASDDKTVKLWD-----------KTSRECVHSY 183
Query: 889 EKN---LLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
++ + + P G+ IAA S D V VW+ + R+L H+ ++N ++FHP
Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHP 239
Score = 75.1 bits (183), Expect = 1e-13
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381
LS H V C +F P+G + SA D+ + LW+ V+ C+ H G V +
Sbjct: 141 LSQHINWVRCARFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE-------HGGFVTYV 193
Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
++ G+ + +AS D TV VWD T ++ + H++ VN+ G L+ T S D T
Sbjct: 194 DFHPSGTCIAAASMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLL-TASSDST 252
Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696
+K+ D+ + + T + V F+ T + SGG D + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris].
Length = 833
Score = 110 bits (274), Expect = 3e-24
Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 1/273 (0%)
Frame = +1
Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
GH+ + F P+G LA+A +D ++LWN + + GH V + ++ G++
Sbjct: 371 GHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYV-GHKDVVTSVQFSPLGNL 429
Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
L SAS D+TV +W + + K HT+ V S + G Q + T S+D ++K+W++ R
Sbjct: 430 LASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADG-QFLATASEDKSIKVWNMYR 488
Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
++ +++T+ V F+ I+S D IK+WD +
Sbjct: 489 QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVD 548
Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
D+TV++WD+R + ++ +Q VH+ N + S+ P G+ I
Sbjct: 549 FNPNGTCIASAGSDHTVKIWDIR----VNKLLQHYQ--VHSGGVNCV--SFHPSGNYIIT 600
Query: 943 GSADRFVYVWEYTSRRILYKLPGHAGSINEVAF 1041
S+D + + + R++Y L GH G + V+F
Sbjct: 601 ASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSF 633
Score = 103 bits (258), Expect = 2e-22
Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 1/258 (0%)
Frame = +1
Query: 202 QAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMEL 381
QA GH+ V +F P G+ LASA DR + LW + + K H+ V +
Sbjct: 405 QARAFRYVGHKDVVTSVQFSPLGNLLASASRDRTVRLW-IPDKRGKSSEFKAHTAPVRSV 463
Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
++ DG L +AS DK++ VW+ + L HT +V C +L+ + S+D T
Sbjct: 464 DFSADGQFLATASEDKSIKVWNMYRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKT 522
Query: 562 VKLWDIRKKAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
+K+WD K + F ++ V FN I S G D+ +K+WD+R NKL + H
Sbjct: 523 IKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVH 582
Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
+ V + D T+++ D+ + R + QG+ + S+S
Sbjct: 583 SGGVNCVSFHPSGNYIITASSDGTLKILDLL----EGRLIYTLQGHT----GPVFTVSFS 634
Query: 919 PDGSKIAAGSADRFVYVW 972
G ++G AD V +W
Sbjct: 635 KGGELFSSGGADTQVLLW 652
Score = 97.1 bits (240), Expect = 3e-20
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 3/235 (1%)
Frame = +1
Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
KGH A+ + ++ G L +AS D + +W+ + R R GH V S + G
Sbjct: 370 KGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSPLG-N 428
Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
L+ + S D TV+LW K+ F+ +T V +V F+ + + D IKVW++ +
Sbjct: 429 LLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMYR 488
Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH-- 882
+ Y++ H V + D T+++WD ++CV F +V
Sbjct: 489 QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTT----NKQCVNNFSDSVGFA 544
Query: 883 NFEKNLLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
NF ++P+G+ IA+ +D V +W+ ++L H+G +N V+FHP
Sbjct: 545 NF------VDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHP 593
Score = 49.7 bits (117), Expect = 5e-06
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 3/146 (2%)
Frame = +1
Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 801
+ +V F+ + Q+ + D + +W+ + + GH D VT +
Sbjct: 376 ITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSPLGNLLASASR 435
Query: 802 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN---LLRCSWSPDGSKIAAGSADRFVYVW 972
D TVR+W P +R G F+ + + +S DG +A S D+ + VW
Sbjct: 436 DRTVRLW-----IPDKR------GKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVW 484
Query: 973 EYTSRRILYKLPGHAGSINEVAFHPD 1050
+R LY L H + F PD
Sbjct: 485 NMYRQRFLYSLYRHTHWVRCAKFSPD 510
>ref|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin
p80 subunit B1) (p80 katanin) isoform 2 [Canis
familiaris].
Length = 655
Score = 106 bits (264), Expect = 4e-23
Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%)
Frame = +1
Query: 448 SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 624
++T +++ + H S V+S + +L+ TG DD V LW I K I + +T V
Sbjct: 7 TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66
Query: 625 LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 804
+V N + I++G I+VWDL K+ T+ GH ++ + D
Sbjct: 67 ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126
Query: 805 NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWEYT 981
+++WD+R ++ CV ++G+ +RC +SPDG +A+ + D V +W+ T
Sbjct: 127 TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177
Query: 982 SRRILYKLPGHAGSINEVAFHPDK 1053
+ +++ + PGH G +N V FHP++
Sbjct: 178 AGKMMSEFPGHTGPVNVVEFHPNE 201
Score = 94.4 bits (233), Expect = 2e-19
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 2/239 (0%)
Frame = +1
Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 444
+G LA+ G D + LW++ + +L GH+ V + NT ++ + S ++ VW
Sbjct: 32 SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 445 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 621
D E + ++ L GH + + S G + V +GS D +KLWDIR+K + ++ Q
Sbjct: 91 DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149
Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 801
V + F+ + S D+ +K+WDL K+ GH V +
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209
Query: 802 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWE 975
D T+R WD+ F C++ G V + ++PDG + +G D VY WE
Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260
Score = 89.0 bits (219), Expect = 7e-18
Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 1/219 (0%)
Frame = +1
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
G +L + D V +W + L GHTS V S +L+ GS G++++WD
Sbjct: 33 GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91
Query: 577 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
+ ++T + + ++ F+ + + SG D +IK+WD+R+ + RGH+ +V
Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
A D+TV++WD+ + + F G H N++ + P+
Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
+A+GS+DR + W+ +++ + G G + V F+PD
Sbjct: 204 LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242
Score = 78.2 bits (191), Expect = 1e-14
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 393
L GH+ + FHP G +AS D I LW++ G Y +GHS AV L ++
Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
DG L SA+ D TV +WD G+ + GHT VN L+ +GS D T++ W
Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216
Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 681
D+ K + + V +V FN + SG D+
Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253
>ref|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin
p80 subunit B1) (p80 katanin) isoform 1 [Canis
familiaris].
Length = 655
Score = 106 bits (264), Expect = 4e-23
Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%)
Frame = +1
Query: 448 SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 624
++T +++ + H S V+S + +L+ TG DD V LW I K I + +T V
Sbjct: 7 TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66
Query: 625 LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 804
+V N + I++G I+VWDL K+ T+ GH ++ + D
Sbjct: 67 ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126
Query: 805 NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWEYT 981
+++WD+R ++ CV ++G+ +RC +SPDG +A+ + D V +W+ T
Sbjct: 127 TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177
Query: 982 SRRILYKLPGHAGSINEVAFHPDK 1053
+ +++ + PGH G +N V FHP++
Sbjct: 178 AGKMMSEFPGHTGPVNVVEFHPNE 201
Score = 94.4 bits (233), Expect = 2e-19
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 2/239 (0%)
Frame = +1
Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 444
+G LA+ G D + LW++ + +L GH+ V + NT ++ + S ++ VW
Sbjct: 32 SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 445 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 621
D E + ++ L GH + + S G + V +GS D +KLWDIR+K + ++ Q
Sbjct: 91 DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149
Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 801
V + F+ + S D+ +K+WDL K+ GH V +
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209
Query: 802 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWE 975
D T+R WD+ F C++ G V + ++PDG + +G D VY WE
Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260
Score = 89.0 bits (219), Expect = 7e-18
Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 1/219 (0%)
Frame = +1
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
G +L + D V +W + L GHTS V S +L+ GS G++++WD
Sbjct: 33 GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91
Query: 577 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
+ ++T + + ++ F+ + + SG D +IK+WD+R+ + RGH+ +V
Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
A D+TV++WD+ + + F G H N++ + P+
Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
+A+GS+DR + W+ +++ + G G + V F+PD
Sbjct: 204 LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242
Score = 78.2 bits (191), Expect = 1e-14
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 393
L GH+ + FHP G +AS D I LW++ G Y +GHS AV L ++
Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
DG L SA+ D TV +WD G+ + GHT VN L+ +GS D T++ W
Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216
Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 681
D+ K + + V +V FN + SG D+
Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,042,180
Number of extensions: 1019300
Number of successful extensions: 6412
Number of sequences better than 1.0e-05: 217
Number of HSP's gapped: 4325
Number of HSP's successfully gapped: 558
Length of query: 351
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 247
Effective length of database: 15,407,560
Effective search space: 3805667320
Effective search space used: 3805667320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013788
(1054 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356314.1| PREDICTED: u5 small nuclear ribonucleoprotei... 603 e-173
Alignment gi|XP_003127814.2| PREDICTED: u5 small nuclear ribonucleoprotei... 305 2e-83
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 149 3e-36
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 147 1e-35
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 118 6e-27
Alignment gi|NP_001177202.1| autophagy-related protein 16-1 isoform 2 [Su... 115 3e-26
Alignment gi|NP_001177201.1| autophagy-related protein 16-1 isoform 1 [Su... 115 3e-26
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 113 2e-25
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 113 2e-25
Alignment gi|XP_003129670.1| PREDICTED: autophagy-related protein 16-2 [S... 107 1e-23
>ref|XP_003356314.1| PREDICTED: u5 small nuclear ribonucleoprotein 40 kDa protein-like
[Sus scrofa].
Length = 358
Score = 603 bits (1555), Expect = e-173
Identities = 296/340 (87%), Positives = 298/340 (87%)
Frame = +1
Query: 34 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213
MIEQQKRKGPELPLVPVKRQRHE RCSSLQAPI
Sbjct: 1 MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI 60
Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 181 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 241 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPDK 1053
IAAGSADRFVYVW+ TSRRILYKLPGHAGSINEVAFHPD+
Sbjct: 301 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 340
>ref|XP_003127814.2| PREDICTED: u5 small nuclear ribonucleoprotein 40 kDa protein-like
[Sus scrofa].
Length = 186
Score = 305 bits (782), Expect = 2e-83
Identities = 150/178 (84%), Positives = 150/178 (84%)
Frame = +1
Query: 34 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213
MIEQQKRKGPELPLVPVKRQRHE RCSSLQAPI
Sbjct: 1 MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI 60
Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK
Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 178
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 149 bits (376), Expect = 3e-36
Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 5/281 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156
Query: 574 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 748 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927
V+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270
Query: 928 SK-IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
K I +GS D VY+W ++ I+ KL GH + A HP
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 82.4 bits (202), Expect = 4e-16
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 49/208 (23%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRL--------------------------------- 477
GS++ S+S D +WD+ +G+ +K L
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 478 -------KGHTSFVNSCYP-----ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
K +T N Y + G + + +GS+D V +W+++ K +Q Q +T
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 619 QVLAVTFNDTSDQIISGGIDND--IKVW 696
V++ + T + I S ++ND IK+W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 63.9 bits (154), Expect = 1e-10
Identities = 36/147 (24%), Positives = 67/147 (45%)
Frame = +1
Query: 610 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789
+T V +V F+ + + S D IK+W K T+ GH ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 790 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969
+ D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 970 WEYTSRRILYKLPGHAGSINEVAFHPD 1050
W+ + + L LP H+ ++ V F+ D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRD 182
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 147 bits (371), Expect = 1e-35
Identities = 89/279 (31%), Positives = 142/279 (50%), Gaps = 3/279 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L GH V KF PNG LAS+ D++I++W Y D LKGHS + ++ +++D
Sbjct: 37 LVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAY-DGKYEKALKGHSLEISDVAWSSDS 95
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 579
L SAS DKT+ +WD G+ +K LKGH+++V C L+ +GS D +VK+W++
Sbjct: 96 GRLVSASDDKTLKIWDVRVGKCLKTLKGHSNYV-FCCNFNPPSNLIISGSFDESVKIWEV 154
Query: 580 RKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-SVT 753
+ ++T ++ V AV FN I+SG D ++WD + T+ + ++
Sbjct: 155 KTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIWDAASGQCLKTLVDDDNPPIS 214
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS-PDGS 930
+DNT+++WD + RC+K + G H EK + ++S G
Sbjct: 215 FVKFSPNGKYILIATLDNTLKLWDY----SRGRCLKTYTG--HKNEKYCIFANFSVTSGK 268
Query: 931 KIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
I +GS D VY+W ++ I+ KL GH + A HP
Sbjct: 269 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHP 307
Score = 74.3 bits (181), Expect = 1e-13
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 49/208 (23%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
L GH V+CC F+P + + S FD + +W V G C TL HS V +H+N
Sbjct: 121 LKGHSNYVFCCNFNPPSNLIISGSFDESVKIWEVKTGRC--LKTLSAHSDPVSAVHFNCK 178
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRL--------------------------------- 477
GS++ S S D +WD+ +G+ +K L
Sbjct: 179 GSLIVSGSYDGVCRIWDAASGQCLKTLVDDDNPPISFVKFSPNGKYILIATLDNTLKLWD 238
Query: 478 -------KGHTSFVNSCYP-----ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
K +T N Y + + + +GS+D V +W+++ K +Q Q +T
Sbjct: 239 YSRGRCLKTYTGHKNEKYCIFANFSVTSGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 298
Query: 619 QVLAVTFNDTSDQIISGGIDND--IKVW 696
V++ + T + I S + ND +K+W
Sbjct: 299 VVISAACHPTENIIASAALGNDKTVKLW 326
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 118 bits (295), Expect = 6e-27
Identities = 82/273 (30%), Positives = 121/273 (44%), Gaps = 1/273 (0%)
Frame = +1
Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
GH V C F N LAS D +++W++ Y GH AV ++++ G +
Sbjct: 17 GHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYR-FTGHKDAVTCVNFSPSGHL 75
Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
L S S DKTV +W + HT+ V S + G V T SDD T+K+W R
Sbjct: 76 LASGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFV-TASDDKTIKVWSTHR 134
Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
+K Q+ V F+ I+S D +K+WD + ++ H VT
Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVD 194
Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
MDNTV+VWDVR R ++ +Q +H+ N L S+ P G+ +
Sbjct: 195 FHPSGTCVAAAGMDNTVKVWDVR----THRLLQHYQ--LHSAAVNAL--SFHPSGNYLVT 246
Query: 943 GSADRFVYVWEYTSRRILYKLPGHAGSINEVAF 1041
S+D + + + R+LY L GH G VAF
Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279
Score = 107 bits (266), Expect = 1e-23
Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 3/254 (1%)
Frame = +1
Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396
+GH+ V C F P+G LAS D+ + +W N+ G+ + H+ V +H+ +D
Sbjct: 58 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNIKGES---TVFRAHTATVRSVHFCSD 114
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
G +AS DKT+ VW + + + L H ++V C +L+ + SDD TVKLWD
Sbjct: 115 GQSFVTASDDKTIKVWSTHRQKFLFSLSQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173
Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
+ + ++ ++ V V F+ + + + G+DN +KVWD+R ++L + H+ +V
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVN 233
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
+ D+T+++ D+ + R + +H + ++S G
Sbjct: 234 ALSFHPSGNYLVTASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285
Query: 934 IAAGSADRFVYVWE 975
A+G +D V VW+
Sbjct: 286 FASGGSDEQVMVWK 299
Score = 88.2 bits (217), Expect = 7e-18
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 4/236 (1%)
Frame = +1
Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
KGH AV + ++ + L S S D + VW + R R GH V +C
Sbjct: 16 KGHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAV-TCVNFSPSGH 74
Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
L+ +GS D TV++W K F+ +T V +V F ++ D IKVW +
Sbjct: 75 LLASGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTIKVWSTHR 134
Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888
K +++ H + V + D TV++WD K + VH++
Sbjct: 135 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KTSRECVHSY 183
Query: 889 EKN---LLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
++ + + P G+ +AA D V VW+ + R+L H+ ++N ++FHP
Sbjct: 184 CEHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHP 239
Score = 75.9 bits (185), Expect = 4e-14
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381
LS H V C KF P+G + SA D+ + LW+ V+ C+ H G V +
Sbjct: 141 LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCE-------HGGFVTYV 193
Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
++ G+ + +A D TV VWD T ++ + H++ VN+ G LV T S D T
Sbjct: 194 DFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLV-TASSDST 252
Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTY 723
+K+ D+ + + T + V F+ T + SGG D + VW + + Y
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDVIDY 307
>ref|NP_001177202.1| autophagy-related protein 16-1 isoform 2 [Sus scrofa].
Length = 588
Score = 115 bits (289), Expect = 3e-26
Identities = 83/284 (29%), Positives = 131/284 (46%), Gaps = 5/284 (1%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387
+ + H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +
Sbjct: 296 VCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEF 355
Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
++ GS L +AS D +W + L GH+ V S ++V +GS D T+K
Sbjct: 356 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 414
Query: 568 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
WD+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 415 HWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 468
Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
+T + D+ +++ D+R A ++ F + R +S
Sbjct: 469 LGKITALDFNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSVPGFKCGSDWTRVVFS 524
Query: 919 PDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGS-INEVAFHP 1047
PDGS +AAGSA+ +YVW S ++ L H S IN VA+ P
Sbjct: 525 PDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKHHSSPINAVAWSP 568
>ref|NP_001177201.1| autophagy-related protein 16-1 isoform 1 [Sus scrofa].
Length = 607
Score = 115 bits (289), Expect = 3e-26
Identities = 83/284 (29%), Positives = 131/284 (46%), Gaps = 5/284 (1%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387
+ + H+GEV +F P LA+ G DR + LW V+GD C+ +L G + + + +
Sbjct: 315 VCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEF 374
Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
++ GS L +AS D +W + L GH+ V S ++V +GS D T+K
Sbjct: 375 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 433
Query: 568 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
WD+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 434 HWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 487
Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
+T + D+ +++ D+R A ++ F + R +S
Sbjct: 488 LGKITALDFNPERTELLSCSRDDLLKIIDLRINAVRQ----TFSVPGFKCGSDWTRVVFS 543
Query: 919 PDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGS-INEVAFHP 1047
PDGS +AAGSA+ +YVW S ++ L H S IN VA+ P
Sbjct: 544 PDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKHHSSPINAVAWSP 587
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 113 bits (283), Expect = 2e-25
Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 1/232 (0%)
Frame = +1
Query: 358 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537
H G V ++ DG L +AS D V W++++G + +L GHT V C + G +L
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDG-RLF 78
Query: 538 CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 714
+ S D T++LWD+ K +Q + + V V+F+ S Q+ SGG D + +W+++ +
Sbjct: 79 ASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQ 138
Query: 715 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894
+ + GH DS+ + D+T+R+WD+R IF +
Sbjct: 139 VLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTG-----AIFHQELEGHRG 193
Query: 895 NLLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
N+ +S G +A+GS D+ +++W+ ++R +L +L GH + +AF PD
Sbjct: 194 NISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD 244
Score = 98.6 bits (244), Expect = 5e-21
Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 3/249 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L GH G V C+F P+G AS D I LW+V + LKGH +V + ++ D
Sbjct: 59 LGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWDV-AKVECLQVLKGHQRSVETVSFSPDS 117
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 579
L S DK V +W+ ++G+ ++ L GH + S A + TGS D T+++WD+
Sbjct: 118 KQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFA-PSSDCLATGSWDSTIRMWDL 176
Query: 580 RKKAAI---QTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750
R Q + ++ + SG D I +W L ++GH V
Sbjct: 177 RGGTGAIFHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWV 236
Query: 751 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930
+TV+VWD RC +G + C+++PDG
Sbjct: 237 KSIAFSPDGLQLASAGYSHTVKVWDCN----TGRCTDTLKGVLDVAHS----CAFTPDGK 288
Query: 931 KIAAGSADR 957
+ +G+AD+
Sbjct: 289 LLVSGTADQ 297
Score = 86.7 bits (213), Expect = 2e-17
Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 5/279 (1%)
Frame = +1
Query: 229 HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML 408
H GEV F P+G L +A D + W + L GH+G V ++ DG +
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWK-LGGHTGPVKFCRFSPDGRLF 78
Query: 409 FSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKK 588
S S+D T+ +WD E ++ LKGH V + + QL +G D V LW+++
Sbjct: 79 ASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQL-ASGGWDKRVMLWEVQSG 137
Query: 589 AAIQ-TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK---LTYTMRGHADSVTX 756
++ + + + F +SD + +G D+ I++WDLR + GH +++
Sbjct: 138 QVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNIS- 196
Query: 757 XXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKI-FQGNVHNFEKNLLRCSWSPDGSK 933
+ D T+ +W P R + + +G+V + K++ ++SPDG +
Sbjct: 197 CLCFSAFGLLASGSWDKTIHIW-----KPSTRSLLVQLKGHV-TWVKSI---AFSPDGLQ 247
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
+A+ V VW+ + R L G + AF PD
Sbjct: 248 LASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPD 286
Score = 76.6 bits (187), Expect = 2e-14
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 5/183 (2%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390
+ +L GH+ V F P+ LAS G+D+ ++LW V L GH ++ +
Sbjct: 98 LQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSG-QVLRHLVGHRDSIQSSDFA 156
Query: 391 TDGSMLFSASTDKTVAVWDSETGERV---KRLKGHTSFVNS-CYPARRGPQLVCTGSDDG 558
L + S D T+ +WD G + L+GH ++ C+ A L+ +GS D
Sbjct: 157 PSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAF---GLLASGSWDK 213
Query: 559 TVKLW-DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 735
T+ +W + +Q + V ++ F+ Q+ S G + +KVWD + T T++G
Sbjct: 214 TIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKG 273
Query: 736 HAD 744
D
Sbjct: 274 VLD 276
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 113 bits (283), Expect = 2e-25
Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 1/232 (0%)
Frame = +1
Query: 358 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537
H G V ++ DG L +AS D V W++++G + +L GHT V C + G +L
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDG-RLF 78
Query: 538 CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 714
+ S D T++LWD+ K +Q + + V V+F+ S Q+ SGG D + +W+++ +
Sbjct: 79 ASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQ 138
Query: 715 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894
+ + GH DS+ + D+T+R+WD+R IF +
Sbjct: 139 VLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTG-----AIFHQELEGHRG 193
Query: 895 NLLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
N+ +S G +A+GS D+ +++W+ ++R +L +L GH + +AF PD
Sbjct: 194 NISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD 244
Score = 98.6 bits (244), Expect = 5e-21
Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 3/249 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L GH G V C+F P+G AS D I LW+V + LKGH +V + ++ D
Sbjct: 59 LGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWDV-AKVECLQVLKGHQRSVETVSFSPDS 117
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 579
L S DK V +W+ ++G+ ++ L GH + S A + TGS D T+++WD+
Sbjct: 118 KQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFA-PSSDCLATGSWDSTIRMWDL 176
Query: 580 RKKAAI---QTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750
R Q + ++ + SG D I +W L ++GH V
Sbjct: 177 RGGTGAIFHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWV 236
Query: 751 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930
+TV+VWD RC +G + C+++PDG
Sbjct: 237 KSIAFSPDGLQLASAGYSHTVKVWDCN----TGRCTDTLKGVLDVAHS----CAFTPDGK 288
Query: 931 KIAAGSADR 957
+ +G+AD+
Sbjct: 289 LLVSGTADQ 297
Score = 86.7 bits (213), Expect = 2e-17
Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 5/279 (1%)
Frame = +1
Query: 229 HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSML 408
H GEV F P+G L +A D + W + L GH+G V ++ DG +
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWK-LGGHTGPVKFCRFSPDGRLF 78
Query: 409 FSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKK 588
S S+D T+ +WD E ++ LKGH V + + QL +G D V LW+++
Sbjct: 79 ASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQL-ASGGWDKRVMLWEVQSG 137
Query: 589 AAIQ-TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNK---LTYTMRGHADSVTX 756
++ + + + F +SD + +G D+ I++WDLR + GH +++
Sbjct: 138 QVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNIS- 196
Query: 757 XXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKI-FQGNVHNFEKNLLRCSWSPDGSK 933
+ D T+ +W P R + + +G+V + K++ ++SPDG +
Sbjct: 197 CLCFSAFGLLASGSWDKTIHIW-----KPSTRSLLVQLKGHV-TWVKSI---AFSPDGLQ 247
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
+A+ V VW+ + R L G + AF PD
Sbjct: 248 LASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPD 286
Score = 76.6 bits (187), Expect = 2e-14
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 5/183 (2%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN 390
+ +L GH+ V F P+ LAS G+D+ ++LW V L GH ++ +
Sbjct: 98 LQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSG-QVLRHLVGHRDSIQSSDFA 156
Query: 391 TDGSMLFSASTDKTVAVWDSETGERV---KRLKGHTSFVNS-CYPARRGPQLVCTGSDDG 558
L + S D T+ +WD G + L+GH ++ C+ A L+ +GS D
Sbjct: 157 PSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAF---GLLASGSWDK 213
Query: 559 TVKLW-DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 735
T+ +W + +Q + V ++ F+ Q+ S G + +KVWD + T T++G
Sbjct: 214 TIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKG 273
Query: 736 HAD 744
D
Sbjct: 274 VLD 276
>ref|XP_003129670.1| PREDICTED: autophagy-related protein 16-2 [Sus scrofa].
Length = 621
Score = 107 bits (267), Expect = 1e-23
Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 2/277 (0%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+L H EV F PN S LA+ G DRLILLWNV G TL+G G++ + ++
Sbjct: 333 VLEAHLSEVNAVHFGPNSSVLATGGADRLILLWNVVGGRLKAKQTLEGAGGSITSVDFDP 392
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
GS + +A+ +K +W + + L GHT V + Q V TGS D TVK W
Sbjct: 393 SGSQVLAATYNKAAQLWKVGEAQSKETLSGHTDKVTAAKFKLTRHQAV-TGSRDRTVKEW 451
Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
D+ + +T V D IISG D I+ WD R + T + VT
Sbjct: 452 DLGRAYCSRTISVVSYCNDVVCGD--HIIISGHNDQKIRFWDSRGPRCTQVIPVQG-RVT 508
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
+ D+T++V D+R ++F+ + + + +SPD S
Sbjct: 509 SLSLSHDQLHLLSCSRDDTLKVIDLR----VSNIRQVFRADGFKCGSDWTKAVFSPDRSY 564
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPG-HAGSINEVAF 1041
AGS D +Y+W+ + ++ L G H ++N VA+
Sbjct: 565 ALAGSWDGALYIWDVDTGKLESSLRGPHCAAVNAVAW 601
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,405,667
Number of extensions: 639255
Number of successful extensions: 3885
Number of sequences better than 1.0e-05: 127
Number of HSP's gapped: 2710
Number of HSP's successfully gapped: 317
Length of query: 351
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,854,232
Effective search space: 2222412232
Effective search space used: 2222412232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013788
(1054 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 600 e-172
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 161 9e-40
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 149 4e-36
Alignment gi|NP_001192321.1| autophagy-related protein 16-1 isoform 3 [Mu... 117 1e-26
Alignment gi|NP_001192320.1| autophagy-related protein 16-1 isoform 1 [Mu... 117 1e-26
Alignment gi|NP_084122.2| autophagy-related protein 16-1 isoform 2 [Mus m... 117 1e-26
Alignment gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus]. 117 1e-26
Alignment gi|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus]. 114 1e-25
Alignment gi|NP_083963.1| WD repeat-containing protein 38 [Mus musculus]. 114 2e-25
Alignment gi|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus mus... 106 3e-23
>ref|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Mus musculus].
Length = 358
Score = 600 bits (1547), Expect = e-172
Identities = 293/340 (86%), Positives = 297/340 (87%)
Frame = +1
Query: 34 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213
MIEQQKRKGPELPLVPVKR RHE RCSSLQAPI
Sbjct: 1 MIEQQKRKGPELPLVPVKRPRHELLLGAAGAGPGAGPQQATPGALLQAGPPRCSSLQAPI 60
Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 61 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 120
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 121 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 180
Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
DIRKKAA+QTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 181 DIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 240
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 241 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 300
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPDK 1053
IAAGSADRFVYVW+ TSRR+LYKLPGHAGSINEVAFHPD+
Sbjct: 301 IAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDE 340
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 161 bits (407), Expect = 9e-40
Identities = 95/284 (33%), Positives = 148/284 (52%), Gaps = 4/284 (1%)
Frame = +1
Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYN 390
+ L+GH + KF PNG LAS+ D LI++W Y G+C TL GHS + ++ ++
Sbjct: 33 LTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKK--TLYGHSLEISDVAWS 90
Query: 391 TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKL 570
+D S L SAS DKT+ VWD +G+ +K LKGH+ FV C L+ +GS D +VK+
Sbjct: 91 SDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFV-FCCDFNPPSNLIVSGSFDESVKI 149
Query: 571 WDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD- 744
W+++ ++T ++ + AV FN I+SG D ++WD + T+ +
Sbjct: 150 WEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNP 209
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
V+ +DNT+++WD + RC+K + G H EK L S+S
Sbjct: 210 PVSFVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTG--HKNEKYCLFASFSVT 263
Query: 925 GSK-IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPDK 1053
G K + +GS D VY+W ++ I+ +L GH + A HP K
Sbjct: 264 GRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTK 307
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 149 bits (376), Expect = 4e-36
Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 5/281 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156
Query: 574 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 748 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927
V+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270
Query: 928 SK-IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
K I +GS D VY+W ++ I+ KL GH + A HP
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 82.4 bits (202), Expect = 5e-16
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 49/208 (23%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRL--------------------------------- 477
GS++ S+S D +WD+ +G+ +K L
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 478 -------KGHTSFVNSCYP-----ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
K +T N Y + G + + +GS+D V +W+++ K +Q Q +T
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 619 QVLAVTFNDTSDQIISGGIDND--IKVW 696
V++ + T + I S ++ND IK+W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 63.9 bits (154), Expect = 2e-10
Identities = 36/147 (24%), Positives = 67/147 (45%)
Frame = +1
Query: 610 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789
+T V +V F+ + + S D IK+W K T+ GH ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 790 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969
+ D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 970 WEYTSRRILYKLPGHAGSINEVAFHPD 1050
W+ + + L LP H+ ++ V F+ D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRD 182
>ref|NP_001192321.1| autophagy-related protein 16-1 isoform 3 [Mus musculus].
Length = 588
Score = 117 bits (294), Expect = 1e-26
Identities = 83/282 (29%), Positives = 131/282 (46%), Gaps = 5/282 (1%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+ H+GEV +F P LA+ G DR + LW +GD C+ +L G + + + +++
Sbjct: 298 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDS 357
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
G+ L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 358 AGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 416
Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 417 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVVREME-LLG 470
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
+T + D+ ++V D+R A K+ F + R +SPD
Sbjct: 471 KITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQ----TFSAPGFKCGSDWTRVVFSPD 526
Query: 925 GSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
GS +AAGSA+ +YVW + ++ L H+ SIN VA+ P
Sbjct: 527 GSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAP 568
>ref|NP_001192320.1| autophagy-related protein 16-1 isoform 1 [Mus musculus].
Length = 623
Score = 117 bits (294), Expect = 1e-26
Identities = 83/282 (29%), Positives = 131/282 (46%), Gaps = 5/282 (1%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+ H+GEV +F P LA+ G DR + LW +GD C+ +L G + + + +++
Sbjct: 333 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDS 392
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
G+ L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 393 AGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 451
Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 452 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVVREME-LLG 505
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
+T + D+ ++V D+R A K+ F + R +SPD
Sbjct: 506 KITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQ----TFSAPGFKCGSDWTRVVFSPD 561
Query: 925 GSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
GS +AAGSA+ +YVW + ++ L H+ SIN VA+ P
Sbjct: 562 GSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAP 603
>ref|NP_084122.2| autophagy-related protein 16-1 isoform 2 [Mus musculus].
Length = 607
Score = 117 bits (294), Expect = 1e-26
Identities = 83/282 (29%), Positives = 131/282 (46%), Gaps = 5/282 (1%)
Frame = +1
Query: 217 LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHYNT 393
+ H+GEV +F P LA+ G DR + LW +GD C+ +L G + + + +++
Sbjct: 317 VFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDS 376
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
G+ L +AS D +W + L GH+ V S ++V +GS D T+KLW
Sbjct: 377 AGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLKLW 435
Query: 574 DIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
D+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 436 DLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVVREME-LLG 489
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
+T + D+ ++V D+R A K+ F + R +SPD
Sbjct: 490 KITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQ----TFSAPGFKCGSDWTRVVFSPD 545
Query: 925 GSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
GS +AAGSA+ +YVW + ++ L H+ SIN VA+ P
Sbjct: 546 GSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAP 587
>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
Length = 405
Score = 117 bits (294), Expect = 1e-26
Identities = 82/273 (30%), Positives = 121/273 (44%), Gaps = 1/273 (0%)
Frame = +1
Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
GH V C F N LAS D +++W++ Y GH AV ++++ G +
Sbjct: 17 GHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYR-FTGHKDAVTCVNFSPSGHL 75
Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI-R 582
L S S DKTV +W + HT+ V S + G LV T SDD TVK+W R
Sbjct: 76 LASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLV-TASDDKTVKVWSTHR 134
Query: 583 KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
++ Q+ V F+ I+S D +K+WD + ++ H VT
Sbjct: 135 QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVD 194
Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
MDNTV+VWD R R ++ +Q +H+ N L S+ P G+ +
Sbjct: 195 FHPSGTCIAAAGMDNTVKVWDAR----THRLLQHYQ--LHSAAVNAL--SFHPSGNYLIT 246
Query: 943 GSADRFVYVWEYTSRRILYKLPGHAGSINEVAF 1041
S+D + + + R+LY L GH G VAF
Sbjct: 247 ASSDSTLKILDLMEGRLLYTLHGHQGPATTVAF 279
Score = 108 bits (270), Expect = 7e-24
Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 3/254 (1%)
Frame = +1
Query: 223 SGHEGEVYCCKFHPNGSTLASAGFDRLILLW--NVYGDCDNYATLKGHSGAVMELHYNTD 396
+GH+ V C F P+G LAS D+ + +W NV G+ + H+ V +H+ +D
Sbjct: 58 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGES---TVFRAHTATVRSVHFCSD 114
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
G L +AS DKTV VW + + L H ++V C +L+ + SDD TVKLWD
Sbjct: 115 GQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVR-CAKFSPDGRLIVSASDDKTVKLWD 173
Query: 577 IRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
+ I ++ ++ V V F+ + I + G+DN +KVWD R ++L + H+ +V
Sbjct: 174 KTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVN 233
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
+ D+T+++ D+ + R + +H + ++S G
Sbjct: 234 ALSFHPSGNYLITASSDSTLKILDLM----EGRLLY----TLHGHQGPATTVAFSRTGEY 285
Query: 934 IAAGSADRFVYVWE 975
A+G +D V VW+
Sbjct: 286 FASGGSDEQVMVWK 299
Score = 89.4 bits (220), Expect = 4e-18
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 4/236 (1%)
Frame = +1
Query: 352 KGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ 531
KGH AV + ++ + L S S D T+ +W + R R GH V +C
Sbjct: 16 KGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAV-TCVNFSPSGH 74
Query: 532 LVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ 708
L+ +GS D TV++W K F+ +T V +V F +++ D +KVW +
Sbjct: 75 LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHR 134
Query: 709 NKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNF 888
+ +++ H + V + D TV++WD K + +H++
Sbjct: 135 QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWD-----------KTSRECIHSY 183
Query: 889 EKN---LLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
++ + + P G+ IAA D V VW+ + R+L H+ ++N ++FHP
Sbjct: 184 CEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHP 239
Score = 75.1 bits (183), Expect = 9e-14
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWN------VYGDCDNYATLKGHSGAVMEL 381
L+ H V C KF P+G + SA D+ + LW+ ++ C+ H G V +
Sbjct: 141 LTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCE-------HGGFVTYV 193
Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGT 561
++ G+ + +A D TV VWD+ T ++ + H++ VN+ G L+ T S D T
Sbjct: 194 DFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLI-TASSDST 252
Query: 562 VKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVW 696
+K+ D+ + + T + V F+ T + SGG D + VW
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVW 298
Score = 68.6 bits (166), Expect = 8e-12
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 2/195 (1%)
Frame = +1
Query: 469 KRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFND 645
+ KGH V +C + + +GS D T+ +W ++ ++ F V V F+
Sbjct: 13 RHFKGHRDAV-TCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSP 71
Query: 646 TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWD 825
+ + SG D +++W + R H +V + D TV+VW
Sbjct: 72 SGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWS 131
Query: 826 VRPFAPKERCVKIFQGNVHNFEKNLLRCS-WSPDGSKIAAGSADRFVYVWEYTSRRILYK 1002
++R + ++ N +RC+ +SPDG I + S D+ V +W+ TSR ++
Sbjct: 132 TH----RQRFLFSLTQHI-----NWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHS 182
Query: 1003 LPGHAGSINEVAFHP 1047
H G + V FHP
Sbjct: 183 YCEHGGFVTYVDFHP 197
>ref|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus].
Length = 476
Score = 114 bits (286), Expect = 1e-25
Identities = 78/289 (26%), Positives = 135/289 (46%), Gaps = 3/289 (1%)
Frame = +1
Query: 193 SSLQAPIMLLS--GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSG 366
S L+ PI+ S GH+ + F PN +A+A +D ++LW++ Y + GH
Sbjct: 3 SGLEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYV-GHKD 61
Query: 367 AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTG 546
V L ++ G++L SAS D+TV +W + + K HT+ V S + G QL+ T
Sbjct: 62 VVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADG-QLLVTA 120
Query: 547 SDDGTVKLWDI-RKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTY 723
S+D ++K+W + R++ +++T+ V F+ I+S D IK+WD +
Sbjct: 121 SEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVN 180
Query: 724 TMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLL 903
D+ V++WD+R + ++ +Q VH+ N L
Sbjct: 181 NFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIR----MNKLLQHYQ--VHSCGVNCL 234
Query: 904 RCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
S+ P G+ + S+D V + + R++Y L GH G + V+F D
Sbjct: 235 --SFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKD 281
Score = 109 bits (272), Expect = 4e-24
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 1/250 (0%)
Frame = +1
Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
GH+ V +F P G+ LASA DR + LW V + K H+ V + ++ DG +
Sbjct: 58 GHKDVVTSLQFSPQGNLLASASRDRTVRLW-VLDRKGKSSEFKAHTAPVRSVDFSADGQL 116
Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 585
L +AS DK++ VW + L HT +V C +L+ + S+D T+K+WD
Sbjct: 117 LVTASEDKSIKVWSMFRQRFLYSLYRHTHWVR-CAKFSPDGRLIVSCSEDKTIKIWDTTN 175
Query: 586 KAAIQTFQNTYQVLA-VTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
K + F ++ V FN I S G D+ +K+WD+R NKL + H+ V
Sbjct: 176 KQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLS 235
Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
+ D TV++ D+ + R + QG+ + S+S DG + +
Sbjct: 236 FHPLGNSLVTASSDGTVKMLDLI----EGRLIYTLQGHTGP----VFTVSFSKDGELLTS 287
Query: 943 GSADRFVYVW 972
G AD V +W
Sbjct: 288 GGADAQVLIW 297
>ref|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].
Length = 303
Score = 114 bits (284), Expect = 2e-25
Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 1/233 (0%)
Frame = +1
Query: 358 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 537
H G V ++ DG L +AS D V VW +++G + RL GH V SC + G +L+
Sbjct: 25 HHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDG-RLI 83
Query: 538 CTGSDDGTVKLWDIRKKAAIQTFQNTYQ-VLAVTFNDTSDQIISGGIDNDIKVWDLRQNK 714
+ S D +++LWD+ + + + + V V+F+ S Q+ SGG D VW+++ +
Sbjct: 84 ASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGR 143
Query: 715 LTYTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 894
+ + GH DS+ + D+TV +WD+R P + N+
Sbjct: 144 RVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTP-----VVSYHNLEGHTG 198
Query: 895 NLLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPDK 1053
N+ +S G +A+GS D+ + VW+ T+ + +L GH +N +AF PD+
Sbjct: 199 NISCLCYSASG-LLASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDE 250
Score = 102 bits (255), Expect = 4e-22
Identities = 73/249 (29%), Positives = 111/249 (44%), Gaps = 5/249 (2%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
L+GH G V C F P+G +AS+ D I LW+V C + LKGH +V + ++ D
Sbjct: 64 LAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLH--VLKGHQRSVETVSFSPD 121
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
L S DK VW+ ++G RV L GH + S + L TGS D TV +WD
Sbjct: 122 SKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSL-ATGSWDSTVHIWD 180
Query: 577 IRKKAAIQTFQN----TYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 744
+R + ++ N T + + ++ S + SG D I VW N L ++GH
Sbjct: 181 LRASTPVVSYHNLEGHTGNISCLCYS-ASGLLASGSWDKTICVWKPTTNNLPLQLKGHTI 239
Query: 745 SVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD 924
V TV+VWD +C++ +G + C ++PD
Sbjct: 240 WVNSLAFSPDELKLASAGYSRTVKVWD----CLTGKCLETLKGMLDVAH----ACIFTPD 291
Query: 925 GSKIAAGSA 951
G + +G+A
Sbjct: 292 GKLLVSGAA 300
Score = 93.2 bits (230), Expect = 3e-19
Identities = 75/296 (25%), Positives = 129/296 (43%), Gaps = 11/296 (3%)
Frame = +1
Query: 196 SLQAPIMLLSG-------HEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLK 354
+++AP L G H GEV C F P+G TL +A D + +W + L
Sbjct: 7 NIRAPTRLAVGRVRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLW-RLA 65
Query: 355 GHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQL 534
GH G V ++ DG ++ S+S+D ++ +WD + + LKGH V + + QL
Sbjct: 66 GHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQL 125
Query: 535 VCTGSDDGTVKLWDIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQN 711
G D + +W+++ + + + + F+ TSD + +G D+ + +WDLR +
Sbjct: 126 ASGGWDKRAI-VWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRAS 184
Query: 712 KLT---YTMRGHADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVH 882
+ + GH +++ + D T+ VW P + + Q H
Sbjct: 185 TPVVSYHNLEGHTGNIS-CLCYSASGLLASGSWDKTICVW-----KPTTNNLPL-QLKGH 237
Query: 883 NFEKNLLRCSWSPDGSKIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
N L ++SPD K+A+ R V VW+ + + L L G + F PD
Sbjct: 238 TIWVNSL--AFSPDELKLASAGYSRTVKVWDCLTGKCLETLKGMLDVAHACIFTPD 291
>ref|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus musculus].
Length = 658
Score = 106 bits (264), Expect = 3e-23
Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%)
Frame = +1
Query: 448 SETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTYQV 624
++T +++ + H S V+S + +L+ TG DD V LW I K I + +T V
Sbjct: 7 TKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPV 66
Query: 625 LAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMD 804
+V N + I++G I+VWDL K+ T+ GH ++ + D
Sbjct: 67 ESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126
Query: 805 NTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRC-SWSPDGSKIAAGSADRFVYVWEYT 981
+++WD+R ++ CV ++G+ +RC +SPDG +A+ + D V +W+ T
Sbjct: 127 TNIKLWDIR----RKGCVFRYRGH-----SQAVRCLRFSPDGKWLASAADDHTVKLWDLT 177
Query: 982 SRRILYKLPGHAGSINEVAFHPDK 1053
+ +++ + PGH G +N V FHP++
Sbjct: 178 AGKMMSEFPGHTGPVNVVEFHPNE 201
Score = 94.4 bits (233), Expect = 1e-19
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 2/239 (0%)
Frame = +1
Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVW 444
+G LA+ G D + LW++ + +L GH+ V + NT ++ + S ++ VW
Sbjct: 32 SGRLLATGGDDCRVNLWSI-NKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 445 DSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQ- 621
D E + ++ L GH + + S G + V +GS D +KLWDIR+K + ++ Q
Sbjct: 91 DLEAAKILRTLMGHKANICSLDFHPYG-EFVASGSQDTNIKLWDIRRKGCVFRYRGHSQA 149
Query: 622 VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAM 801
V + F+ + S D+ +K+WDL K+ GH V +
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209
Query: 802 DNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRF-VYVWE 975
D T+R WD+ F C++ G V + ++PDG + +G D VY WE
Sbjct: 210 DRTIRFWDLEKFQVVS-CIEGEPGPVRS-------VLFNPDGCCLYSGCQDSLRVYGWE 260
Score = 89.0 bits (219), Expect = 6e-18
Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 1/219 (0%)
Frame = +1
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 576
G +L + D V +W + L GHTS V S +L+ GS G++++WD
Sbjct: 33 GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR-LNTPEELIVAGSQSGSIRVWD 91
Query: 577 IRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
+ ++T + + ++ F+ + + SG D +IK+WD+R+ + RGH+ +V
Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
A D+TV++WD+ + + F G H N++ + P+
Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTA----GKMMSEFPG--HTGPVNVVE--FHPNEYL 203
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPD 1050
+A+GS+DR + W+ +++ + G G + V F+PD
Sbjct: 204 LASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPD 242
Score = 78.2 bits (191), Expect = 1e-14
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY--GDCDNYATLKGHSGAVMELHYNT 393
L GH+ + FHP G +AS D I LW++ G Y +GHS AV L ++
Sbjct: 101 LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY---RGHSQAVRCLRFSP 157
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
DG L SA+ D TV +WD G+ + GHT VN L+ +GS D T++ W
Sbjct: 158 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVN-VVEFHPNEYLLASGSSDRTIRFW 216
Query: 574 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDN 681
D+ K + + V +V FN + SG D+
Sbjct: 217 DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDS 253
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,599,305
Number of extensions: 864911
Number of successful extensions: 5042
Number of sequences better than 1.0e-05: 159
Number of HSP's gapped: 3474
Number of HSP's successfully gapped: 399
Length of query: 351
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 249
Effective length of database: 12,553,887
Effective search space: 3125917863
Effective search space used: 3125917863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013788
(1054 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004805.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 599 e-171
Alignment gi|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens]. 153 2e-37
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 149 4e-36
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 149 4e-36
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 126 3e-29
Alignment gi|NP_001177196.1| autophagy-related protein 16-1 isoform 5 [Ho... 119 5e-27
Alignment gi|NP_001177195.1| autophagy-related protein 16-1 isoform 4 [Ho... 119 5e-27
Alignment gi|NP_110430.5| autophagy-related protein 16-1 isoform 1 [Homo ... 119 5e-27
Alignment gi|NP_060444.3| autophagy-related protein 16-1 isoform 2 [Homo ... 119 5e-27
Alignment gi|NP_942593.2| autophagy-related protein 16-1 isoform 3 [Homo ... 119 5e-27
>ref|NP_004805.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Homo sapiens].
Length = 357
Score = 599 bits (1544), Expect = e-171
Identities = 296/340 (87%), Positives = 298/340 (87%)
Frame = +1
Query: 34 MIEQQKRKGPELPLVPVKRQRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSSLQAPI 213
MIEQQKRKGPELPLVPVKRQRHE RCSSLQAPI
Sbjct: 1 MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPP-RCSSLQAPI 59
Query: 214 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 393
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Sbjct: 60 MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT 119
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Sbjct: 120 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 179
Query: 574 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 753
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Sbjct: 180 DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT 239
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
NAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
Sbjct: 240 GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 299
Query: 934 IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHPDK 1053
IAAGSADRFVYVW+ TSRRILYKLPGHAGSINEVAFHPD+
Sbjct: 300 IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE 339
>ref|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens].
Length = 330
Score = 153 bits (387), Expect = 2e-37
Identities = 94/279 (33%), Positives = 146/279 (52%), Gaps = 3/279 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L GH V KF PNG LAS+ DRLI++W Y D TL GH+ + ++ +++D
Sbjct: 37 LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAY-DGKYEKTLYGHNLEISDVAWSSDS 95
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDI 579
S L SAS DKT+ +WD +G+ +K LKGH+++V C L+ +GS D TVK+W++
Sbjct: 96 SRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYV-FCCNFNPPSNLIISGSFDETVKIWEV 154
Query: 580 RKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-SVT 753
+ ++T ++ V AV FN + I+SG D ++WD + T+ + V+
Sbjct: 155 KTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVS 214
Query: 754 XXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK 933
+DNT+++WD + RC+K + G H EK + ++S G K
Sbjct: 215 FVKFSPNGKYILTATLDNTLKLWDY----SRGRCLKTYTG--HKNEKYCIFANFSVTGGK 268
Query: 934 -IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
I +GS D VY+W ++ I+ KL GH + A HP
Sbjct: 269 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHP 307
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 149 bits (376), Expect = 4e-36
Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 5/281 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156
Query: 574 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 748 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927
V+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270
Query: 928 SK-IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
K I +GS D VY+W ++ I+ KL GH + A HP
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 82.4 bits (202), Expect = 6e-16
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 49/208 (23%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRL--------------------------------- 477
GS++ S+S D +WD+ +G+ +K L
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 478 -------KGHTSFVNSCYP-----ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
K +T N Y + G + + +GS+D V +W+++ K +Q Q +T
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 619 QVLAVTFNDTSDQIISGGIDND--IKVW 696
V++ + T + I S ++ND IK+W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 63.9 bits (154), Expect = 2e-10
Identities = 36/147 (24%), Positives = 67/147 (45%)
Frame = +1
Query: 610 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789
+T V +V F+ + + S D IK+W K T+ GH ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 790 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969
+ D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 970 WEYTSRRILYKLPGHAGSINEVAFHPD 1050
W+ + + L LP H+ ++ V F+ D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRD 182
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 149 bits (376), Expect = 4e-36
Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 5/281 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 399
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 99
Query: 400 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 573
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 156
Query: 574 DIRKKAAIQTF-QNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD-S 747
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 748 VTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 927
V+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTG--HKNEKYCIFANFSVTG 270
Query: 928 SK-IAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFHP 1047
K I +GS D VY+W ++ I+ KL GH + A HP
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Score = 82.4 bits (202), Expect = 6e-16
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 49/208 (23%)
Frame = +1
Query: 220 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 396
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 182
Query: 397 GSMLFSASTDKTVAVWDSETGERVKRL--------------------------------- 477
GS++ S+S D +WD+ +G+ +K L
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 478 -------KGHTSFVNSCYP-----ARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
K +T N Y + G + + +GS+D V +W+++ K +Q Q +T
Sbjct: 243 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 619 QVLAVTFNDTSDQIISGGIDND--IKVW 696
V++ + T + I S ++ND IK+W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330
Score = 63.9 bits (154), Expect = 2e-10
Identities = 36/147 (24%), Positives = 67/147 (45%)
Frame = +1
Query: 610 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXX 789
+T V +V F+ + + S D IK+W K T+ GH ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 790 XNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 969
+ D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 104 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 970 WEYTSRRILYKLPGHAGSINEVAFHPD 1050
W+ + + L LP H+ ++ V F+ D
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRD 182
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 126 bits (317), Expect = 3e-29
Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 3/278 (1%)
Frame = +1
Query: 220 LSGHEGEVYCCKFH-PNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNT 393
L GH VY F+ P G +A+ FD+ LW+V G C Y T +GH+ ++ L +N
Sbjct: 130 LEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKC--YHTFRGHTAEIVCLSFNP 187
Query: 394 DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW 573
+++ + S D T +WD + GE V L+GH++ + S G +++ TGS D TV +W
Sbjct: 188 QSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRII-TGSFDHTVVVW 246
Query: 574 DIRKKAAIQ-TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV 750
D + + ++ + +FN I++G +D K+WD K T+ GH D +
Sbjct: 247 DADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEI 306
Query: 751 TXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGS 930
+ D T R++ A +C+ +G+ E + + S++P G+
Sbjct: 307 LDSCFDYTGKLIATASADGTARIFS----AATRKCIAKLEGH----EGEISKISFNPQGN 358
Query: 931 KIAAGSADRFVYVWEYTSRRILYKLPGHAGSINEVAFH 1044
+ GS+D+ +W+ + + L L GH I AF+
Sbjct: 359 HLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFN 396
Score = 126 bits (316), Expect = 4e-29
Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 2/263 (0%)
Frame = +1
Query: 265 NGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD-GSMLFSASTDKTVAV 441
+GS + +DR LW+ + TL+GH V + +N G + + S DKT +
Sbjct: 103 SGSCFITGSYDRTCKLWDTASG-EELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKL 161
Query: 442 WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQ-NTY 618
W ETG+ +GHT+ + C LV TGS D T KLWDI+ + T + ++
Sbjct: 162 WSVETGKCYHTFRGHTAEI-VCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSA 220
Query: 619 QVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNA 798
++++++FN + D+II+G D+ + VWD + + GH ++ +
Sbjct: 221 EIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGS 280
Query: 799 MDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWEY 978
MD T ++WD A +CV G+ + +L + G IA SAD ++
Sbjct: 281 MDKTCKLWD----ATNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIFSA 332
Query: 979 TSRRILYKLPGHAGSINEVAFHP 1047
+R+ + KL GH G I++++F+P
Sbjct: 333 ATRKCIAKLEGHEGEISKISFNP 355
Score = 118 bits (296), Expect = 8e-27
Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 1/250 (0%)
Frame = +1
Query: 226 GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSM 405
GH E+ C F+P + +A+ D LW++ + Y TL+GHS ++ L +NT G
Sbjct: 175 GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVY-TLRGHSAEIISLSFNTSGDR 233
Query: 406 LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK 585
+ + S D TV VWD++TG +V L GH + ++S L+ TGS D T KLWD
Sbjct: 234 IITGSFDHTVVVWDADTGRKVNILIGHCAEISSA-SFNWDCSLILTGSMDKTCKLWDATN 292
Query: 586 KAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXX 762
+ T + ++L F+ T I + D +++ K + GH ++
Sbjct: 293 GKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKIS 352
Query: 763 XXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA 942
+ D T R+WD A +C+++ +G+ + C+++ G+ +
Sbjct: 353 FNPQGNHLLTGSSDKTARIWD----AQTGQCLQVLEGHT----DEIFSCAFNYKGNIVIT 404
Query: 943 GSADRFVYVW 972
GS D +W
Sbjct: 405 GSKDNTCRIW 414
Score = 95.9 bits (237), Expect = 6e-20
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 5/209 (2%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCD---NYATLKGHSGAVMEL 381
+ L GH E+ F+ +G + + FD +++W D D L GH +
Sbjct: 212 VYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVW----DADTGRKVNILIGHCAEISSA 267
Query: 382 HYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGH-TSFVNSCYPARRGPQLVCTGSDDG 558
+N D S++ + S DKT +WD+ G+ V L GH ++SC+ +L+ T S DG
Sbjct: 268 SFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYT--GKLIATASADG 325
Query: 559 TVKLWDIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRG 735
T +++ + I + + ++ ++FN + +++G D ++WD + + + G
Sbjct: 326 TARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEG 385
Query: 736 HADSVTXXXXXXXXXXXXXNAMDNTVRVW 822
H D + + DNT R+W
Sbjct: 386 HTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
Score = 79.0 bits (193), Expect = 7e-15
Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 22/261 (8%)
Frame = +1
Query: 334 DNYATLKGHSGAVMELHYNTDGSML----------FSASTDKTVAVWDSETGERVKRLKG 483
+ + LK S +++L +TD S L +AS + V + E++ +
Sbjct: 20 EKHGELKTKSIDLLDLGPSTDVSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSN 79
Query: 484 HTSFVNSCYPARRGP----------QLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVL-A 630
HT ++ A P TGS D T KLWD + T + V+ A
Sbjct: 80 HTFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYA 139
Query: 631 VTFNDT-SDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTXXXXXXXXXXXXXNAMDN 807
+ FN+ D+I +G D K+W + K +T RGH + +MD
Sbjct: 140 IAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDT 199
Query: 808 TVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWEYTSR 987
T ++WD+ + +++ H+ E ++ S++ G +I GS D V VW+ +
Sbjct: 200 TAKLWDI------QNGEEVYTLRGHSAE--IISLSFNTSGDRIITGSFDHTVVVWDADTG 251
Query: 988 RILYKLPGHAGSINEVAFHPD 1050
R + L GH I+ +F+ D
Sbjct: 252 RKVNILIGHCAEISSASFNWD 272
>ref|NP_001177196.1| autophagy-related protein 16-1 isoform 5 [Homo sapiens].
Length = 491
Score = 119 bits (298), Expect = 5e-27
Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 5/284 (1%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387
+ + H+GEV +F P LA+ G DR + LW V+G+ C+ +L G + + + +
Sbjct: 199 LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 258
Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
++ GS L +AS D +W + L GH+ V S ++V +GS D T+K
Sbjct: 259 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 317
Query: 568 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
LWD+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 318 LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 371
Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
+T + D+ ++V D+R A K+ F + R +S
Sbjct: 372 LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 427
Query: 919 PDGSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
PDGS +AAGSA+ +Y+W + ++ L H+ SIN VA+ P
Sbjct: 428 PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSP 471
>ref|NP_001177195.1| autophagy-related protein 16-1 isoform 4 [Homo sapiens].
Length = 523
Score = 119 bits (298), Expect = 5e-27
Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 5/284 (1%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387
+ + H+GEV +F P LA+ G DR + LW V+G+ C+ +L G + + + +
Sbjct: 231 LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 290
Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
++ GS L +AS D +W + L GH+ V S ++V +GS D T+K
Sbjct: 291 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 349
Query: 568 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
LWD+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 350 LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 403
Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
+T + D+ ++V D+R A K+ F + R +S
Sbjct: 404 LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 459
Query: 919 PDGSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
PDGS +AAGSA+ +Y+W + ++ L H+ SIN VA+ P
Sbjct: 460 PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSP 503
>ref|NP_110430.5| autophagy-related protein 16-1 isoform 1 [Homo sapiens].
Length = 607
Score = 119 bits (298), Expect = 5e-27
Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 5/284 (1%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387
+ + H+GEV +F P LA+ G DR + LW V+G+ C+ +L G + + + +
Sbjct: 315 LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 374
Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
++ GS L +AS D +W + L GH+ V S ++V +GS D T+K
Sbjct: 375 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 433
Query: 568 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
LWD+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 434 LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 487
Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
+T + D+ ++V D+R A K+ F + R +S
Sbjct: 488 LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 543
Query: 919 PDGSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
PDGS +AAGSA+ +Y+W + ++ L H+ SIN VA+ P
Sbjct: 544 PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSP 587
>ref|NP_060444.3| autophagy-related protein 16-1 isoform 2 [Homo sapiens].
Length = 588
Score = 119 bits (298), Expect = 5e-27
Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 5/284 (1%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387
+ + H+GEV +F P LA+ G DR + LW V+G+ C+ +L G + + + +
Sbjct: 296 LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 355
Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
++ GS L +AS D +W + L GH+ V S ++V +GS D T+K
Sbjct: 356 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 414
Query: 568 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
LWD+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 415 LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 468
Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
+T + D+ ++V D+R A K+ F + R +S
Sbjct: 469 LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 524
Query: 919 PDGSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
PDGS +AAGSA+ +Y+W + ++ L H+ SIN VA+ P
Sbjct: 525 PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSP 568
>ref|NP_942593.2| autophagy-related protein 16-1 isoform 3 [Homo sapiens].
Length = 444
Score = 119 bits (298), Expect = 5e-27
Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 5/284 (1%)
Frame = +1
Query: 211 IMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGD-CDNYATLKGHSGAVMELHY 387
+ + H+GEV +F P LA+ G DR + LW V+G+ C+ +L G + + + +
Sbjct: 152 LCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEF 211
Query: 388 NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVK 567
++ GS L +AS D +W + L GH+ V S ++V +GS D T+K
Sbjct: 212 DSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIV-SGSHDRTLK 270
Query: 568 LWDIRKKAAIQTFQNTYQVLAVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGH 738
LWD+R K I+T + ND T ++SG D I+ WD+R + M
Sbjct: 271 LWDLRSKVCIKTV-----FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREME-L 324
Query: 739 ADSVTXXXXXXXXXXXXXNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWS 918
+T + D+ ++V D+R A K+ F + R +S
Sbjct: 325 LGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ----TFSAPGFKCGSDWTRVVFS 380
Query: 919 PDGSKIAAGSADRFVYVWEYTSRRILYKL-PGHAGSINEVAFHP 1047
PDGS +AAGSA+ +Y+W + ++ L H+ SIN VA+ P
Sbjct: 381 PDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSP 424
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,498,068
Number of extensions: 1013237
Number of successful extensions: 6029
Number of sequences better than 1.0e-05: 196
Number of HSP's gapped: 4084
Number of HSP's successfully gapped: 494
Length of query: 351
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,901,872
Effective search space: 3695664256
Effective search space used: 3695664256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013788
(1054 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 353 1e-94
Sscrofa_Chr08 88 1e-14
>Sscrofa_Chr06
|| Length = 157765593
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 1 gtcagtggcggcctgaggagagcggttgccgccatgatagaacagcagaagcgcaagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81586244 gtcagtggcggcctgaggagagcggttgccgccatgatagaacagcagaagcgcaagggc 81586185
Query: 61 ccagagttgcctctggtcccagtcaagcggcagcggcatgaattgcttttgggagcggcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81586184 ccagagttgcctctggtcccagtcaagcggcagcggcatgaattgcttttgggagcggcg 81586125
Query: 121 gggtcgggcccgggagccgggcagcagcaggcggcgccgggagctttgctgcaagcgg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81586124 gggtcgggcccgggagccgggcagcagcaggcggcgccgggagctttgctgcaagcgg 81586067
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 400 agtatgctcttctcagcttccacagataaaactgtggcagtgtgggatagcgaaacaggc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81578718 agtatgctcttctcagcttccacagataaaactgtggcagtgtgggatagcgaaacaggc 81578659
Query: 460 gaaagggttaaaagactgaagggacatacttcctttgtgaattcctgttatccggccagg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81578658 gaaagggttaaaagactgaagggacatacttcctttgtgaattcctgttatccggccagg 81578599
Query: 520 agaggcccccagcttgtctgcactggcagtgatgatggtacagttaag 567
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81578598 agaggcccccagcttgtctgcactggcagtgatgatggtacagttaag 81578551
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 177 ggggcctccaagatgttcctcccttcaagccccaatcatgcttctctcaggacatgaagg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81583338 ggggcctccaagatgttcctcccttcaagccccaatcatgcttctctcaggacatgaagg 81583279
Query: 237 ggaagtgtattgctgcaagtttcaccccaatggatccaccttagcatctgcaggatttga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81583278 ggaagtgtattgctgcaagtttcaccccaatggatccaccttagcatctgcaggatttga 81583219
Query: 297 ccgactgatat 307
|||||||||||
Sbjct: 81583218 ccgactgatat 81583208
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 566 agctttgggacatccgtaagaaagcagccatccagacatttcagaatacctaccaggtgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81570146 agctttgggacatccgtaagaaagcagccatccagacatttcagaatacctaccaggtgt 81570087
Query: 626 tagctgtgaccttcaatgacacaagtgatcaaattatttctggtggaatagacaatgata 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81570086 tagctgtgaccttcaatgacacaagtgatcaaattatttctggtggaatagacaatgata 81570027
Query: 686 tcaaggt 692
|||||||
Sbjct: 81570026 tcaaggt 81570020
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 689 aggtctgggacctgcgccaaaacaagctgacctacacaatgaggggccatgcagattccg 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81556754 aggtctgggacctgcgccaaaacaagctgacctacacaatgaggggccatgcagattccg 81556695
Query: 749 tgacgggcctgagtttaagttctgaaggctcatatctcttatccaatgcaatggacaata 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81556694 tgacgggcctgagtttaagttctgaaggctcatatctcttatccaatgcaatggacaata 81556635
Query: 809 cag 811
|||
Sbjct: 81556634 cag 81556632
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 308 tgttgtggaatgtctatggcgactgtgataactatgctacgttgaagggacacagtggag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81580900 tgttgtggaatgtctatggcgactgtgataactatgctacgttgaagggacacagtggag 81580841
Query: 368 cagtgatggaactgcattataacacagatggcag 401
||||||||||||||||||||||||||||||||||
Sbjct: 81580840 cagtgatggaactgcattataacacagatggcag 81580807
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 809 cagtgcgggtctgggatgtccggccattcgctcccaaagagaggtgtgtgaagatatttc 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81553724 cagtgcgggtctgggatgtccggccattcgctcccaaagagaggtgtgtgaagatatttc 81553665
Query: 869 aaggaaatgtgcacaactttgaaaag 894
||||||||||||||||||||||||||
Sbjct: 81553664 aaggaaatgtgcacaactttgaaaag 81553639
Score = 161 bits (81), Expect = 9e-37
Identities = 93/97 (95%)
Strand = Plus / Minus
Query: 954 caggtttgtgtatgtgtgggaatacacaagcaggaggattttgtataaactacccggcca 1013
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 81547008 caggtttgtgtatgtgtgggataccacaagcaggaggattttgtataaactacccggcca 81546949
Query: 1014 tgctggctccatcaatgaagtggcttttcaccctgac 1050
||||||||||||||||||||||||||| |||||||||
Sbjct: 81546948 tgctggctccatcaatgaagtggctttccaccctgac 81546912
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 893 agaatcttctgagatgttcttggtcacctgatggaagcaagatagcagctgggtcagctg 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81551132 agaatcttctgagatgttcttggtcacctgatggaagcaagatagcagctgggtcagctg 81551073
Query: 953 acaggt 958
||||||
Sbjct: 81551072 acaggt 81551067
>Sscrofa_Chr08
|| Length = 148491826
Score = 87.7 bits (44), Expect = 1e-14
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 879 gcacaactttgaaaagaatcttctgagatgttcttggtcacctgatggaagcaagatagc 938
||||| |||| ||||||||||||||||||| ||||| ||| | |||||||||||||||||
Sbjct: 43892249 gcacacctttcaaaagaatcttctgagatggtcttgatcatccgatggaagcaagatagc 43892190
Query: 939 agctgggtcagc 950
|||||| |||||
Sbjct: 43892189 agctggttcagc 43892178
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,441,840
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 10
Length of query: 1054
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1033
Effective length of database: 2,808,413,156
Effective search space: 2901090790148
Effective search space used: 2901090790148
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)