Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013789
(1050 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850539.1| PREDICTED: similar to activating signal cointeg... 568 e-162
Alignment gi|XP_861711.1| PREDICTED: similar to activating signal cointeg... 558 e-159
>ref|XP_850539.1| PREDICTED: similar to activating signal cointegrator 1 complex
subunit 1 isoform 1 [Canis familiaris].
Length = 358
Score = 568 bits (1463), Expect = e-162
Identities = 281/295 (95%), Positives = 290/295 (98%), Gaps = 1/295 (0%)
Frame = +1
Query: 169 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 348
MEVLRPQL+RIGGR+YRKNPIQEQTYQHEEED+D+YQG +ECAE+PC+AYEVVQT QGFR
Sbjct: 1 MEVLRPQLVRIGGRIYRKNPIQEQTYQHEEEDEDFYQGFVECAEDPCDAYEVVQTQQGFR 60
Query: 349 CTVKAPSLLY-KHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTR 525
CTVKAPSLLY +HIVGKRGDTRKKLEVETKTSI+IPKPGQEGEIVITGQHRSGVISARTR
Sbjct: 61 CTVKAPSLLYSEHIVGKRGDTRKKLEVETKTSISIPKPGQEGEIVITGQHRSGVISARTR 120
Query: 526 IDVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLH 705
IDVLLLTFRRKQPFTHFLAFFLNE EVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLH
Sbjct: 121 IDVLLLTFRRKQPFTHFLAFFLNEAEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLH 180
Query: 706 LTIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYA 885
LTIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYA
Sbjct: 181 LTIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYA 240
Query: 886 KVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPMAEGR 1050
KVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDP AEGR
Sbjct: 241 KVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGR 295
>ref|XP_861711.1| PREDICTED: similar to activating signal cointegrator 1 complex
subunit 1 isoform 2 [Canis familiaris].
Length = 387
Score = 558 bits (1438), Expect = e-159
Identities = 282/324 (87%), Positives = 290/324 (89%), Gaps = 30/324 (9%)
Frame = +1
Query: 169 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 348
MEVLRPQL+RIGGR+YRKNPIQEQTYQHEEED+D+YQG +ECAE+PC+AYEVVQT QGFR
Sbjct: 1 MEVLRPQLVRIGGRIYRKNPIQEQTYQHEEEDEDFYQGFVECAEDPCDAYEVVQTQQGFR 60
Query: 349 CTVKAPSLLY------------------------------KHIVGKRGDTRKKLEVETKT 438
CTVKAPSLLY KHIVGKRGDTRKKLEVETKT
Sbjct: 61 CTVKAPSLLYSDGLIYSNTSNDYGLQKITLDCQIYSKWPRKHIVGKRGDTRKKLEVETKT 120
Query: 439 SITIPKPGQEGEIVITGQHRSGVISARTRIDVLLLTFRRKQPFTHFLAFFLNEVEVQERF 618
SI+IPKPGQEGEIVITGQHRSGVISARTRIDVLLLTFRRKQPFTHFLAFFLNE EVQERF
Sbjct: 121 SISIPKPGQEGEIVITGQHRSGVISARTRIDVLLLTFRRKQPFTHFLAFFLNEAEVQERF 180
Query: 619 LKFQEEVLEKCSMDHGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEMLQQCKEEFIDD 798
LKFQEEVLEKCSMDHGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEMLQQCKEEFIDD
Sbjct: 181 LKFQEEVLEKCSMDHGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEMLQQCKEEFIDD 240
Query: 799 ISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKE 978
ISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKE
Sbjct: 241 ISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKE 300
Query: 979 WNSVKLHATVMNTLFRKDPMAEGR 1050
WNSVKLHATVMNTLFRKDP AEGR
Sbjct: 301 WNSVKLHATVMNTLFRKDPNAEGR 324
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,233,400
Number of extensions: 1086534
Number of successful extensions: 3620
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3614
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013789
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013789
(1050 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069509.1| activating signal cointegrator 1 complex sub... 579 e-165
>ref|NP_001069509.1| activating signal cointegrator 1 complex subunit 1 [Bos taurus].
Length = 357
Score = 579 bits (1492), Expect = e-165
Identities = 284/294 (96%), Positives = 291/294 (98%)
Frame = +1
Query: 169 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 348
MEVLRPQL++IGGRVYRKNPIQEQTYQHEEEDDDYYQGL+ECAEEPCE YEVVQTPQGFR
Sbjct: 1 MEVLRPQLIKIGGRVYRKNPIQEQTYQHEEEDDDYYQGLVECAEEPCETYEVVQTPQGFR 60
Query: 349 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 528
CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSI+IPKPGQEGEIVITGQHRSGV+SARTRI
Sbjct: 61 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSISIPKPGQEGEIVITGQHRSGVVSARTRI 120
Query: 529 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 708
DVLLLTFRRKQPFTHFLAFFLNE EVQERFLKFQEEVLEKCSMDHGVDS+IFQNPKKLHL
Sbjct: 121 DVLLLTFRRKQPFTHFLAFFLNEAEVQERFLKFQEEVLEKCSMDHGVDSSIFQNPKKLHL 180
Query: 709 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 888
TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEM+GIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMSGIEYMNDDPGMVDVLYAK 240
Query: 889 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPMAEGR 1050
VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDP AEGR
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGR 294
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,400,328
Number of extensions: 1050675
Number of successful extensions: 3250
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3246
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013789
(1050 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359276.1| PREDICTED: activating signal cointegrator 1 ... 588 e-168
Alignment gi|XP_003361337.1| PREDICTED: a-kinase anchor protein 7 isoform... 50 3e-06
>ref|XP_003359276.1| PREDICTED: activating signal cointegrator 1 complex subunit 1-like
[Sus scrofa].
Length = 357
Score = 588 bits (1516), Expect = e-168
Identities = 292/294 (99%), Positives = 292/294 (99%)
Frame = +1
Query: 169 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 348
MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYY GLMECAEEPCEAYEVVQTPQGFR
Sbjct: 1 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYHGLMECAEEPCEAYEVVQTPQGFR 60
Query: 349 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 528
CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI
Sbjct: 61 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 120
Query: 529 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 708
DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL
Sbjct: 121 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 180
Query: 709 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 888
TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 240
Query: 889 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPMAEGR 1050
VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDP AEGR
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGR 294
>ref|XP_003361337.1| PREDICTED: a-kinase anchor protein 7 isoform gamma-like, partial [Sus
scrofa].
Length = 206
Score = 49.7 bits (117), Expect = 3e-06
Identities = 32/103 (31%), Positives = 51/103 (49%)
Frame = +1
Query: 703 HLTIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLY 882
H+T+ ++ LL+E E+ + L + K FI++I GKPL + G++ + G V
Sbjct: 30 HITLLVMKLLNEDEVNIGIDALLELKP-FIEEILQGKPLTLPFEGVDTFGNQVGFV---- 84
Query: 883 AKVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVM 1011
K+ D N L E+ D FQ G++ E + K H T M
Sbjct: 85 -KLAKGDHINPLLEIADTAKRTFQEKGVLAGESKTFKPHLTFM 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,983,755
Number of extensions: 671196
Number of successful extensions: 2095
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2093
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013789
(1050 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186116.1| activating signal cointegrator 1 complex sub... 496 e-141
Alignment gi|NP_081213.1| activating signal cointegrator 1 complex subuni... 496 e-141
>ref|NP_001186116.1| activating signal cointegrator 1 complex subunit 1 [Mus musculus].
Length = 356
Score = 496 bits (1278), Expect = e-141
Identities = 247/294 (84%), Positives = 266/294 (90%)
Frame = +1
Query: 169 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 348
M+VLRPQ++ GR YRKNPIQE+ YQHEE D+D+Y ME ++EPC AYEV QTP GFR
Sbjct: 1 MDVLRPQIVTFDGRNYRKNPIQEKQYQHEE-DEDFYPDSMEYSDEPCGAYEVAQTPHGFR 59
Query: 349 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 528
TV APSLLYKHIVGKRGDT+KK+EVETKTSI IPK G EGEIVITGQHR+GV+SARTRI
Sbjct: 60 ATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVITGQHRNGVVSARTRI 119
Query: 529 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 708
DVLL TFRR+QPFTHFL+FFLNEVEVQERFL FQEEVL KCS D GVDSTIFQNPKKLHL
Sbjct: 120 DVLLDTFRRRQPFTHFLSFFLNEVEVQERFLMFQEEVLRKCSKDRGVDSTIFQNPKKLHL 179
Query: 709 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 888
TIGMLVLLSEQEIQQTCE+LQ+CKEEFI+DISGG+PLEVEMAGIEYMNDDP MVDVLYAK
Sbjct: 180 TIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEMAGIEYMNDDPAMVDVLYAK 239
Query: 889 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPMAEGR 1050
VHMKDGSNRLQELVDRVLERFQ+ GLIVKEW SVKLHATVMNTL RKDP AEGR
Sbjct: 240 VHMKDGSNRLQELVDRVLERFQSLGLIVKEWTSVKLHATVMNTLLRKDPNAEGR 293
>ref|NP_081213.1| activating signal cointegrator 1 complex subunit 1 [Mus musculus].
Length = 356
Score = 496 bits (1278), Expect = e-141
Identities = 247/294 (84%), Positives = 266/294 (90%)
Frame = +1
Query: 169 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 348
M+VLRPQ++ GR YRKNPIQE+ YQHEE D+D+Y ME ++EPC AYEV QTP GFR
Sbjct: 1 MDVLRPQIVTFDGRNYRKNPIQEKQYQHEE-DEDFYPDSMEYSDEPCGAYEVAQTPHGFR 59
Query: 349 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 528
TV APSLLYKHIVGKRGDT+KK+EVETKTSI IPK G EGEIVITGQHR+GV+SARTRI
Sbjct: 60 ATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVITGQHRNGVVSARTRI 119
Query: 529 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 708
DVLL TFRR+QPFTHFL+FFLNEVEVQERFL FQEEVL KCS D GVDSTIFQNPKKLHL
Sbjct: 120 DVLLDTFRRRQPFTHFLSFFLNEVEVQERFLMFQEEVLRKCSKDRGVDSTIFQNPKKLHL 179
Query: 709 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 888
TIGMLVLLSEQEIQQTCE+LQ+CKEEFI+DISGG+PLEVEMAGIEYMNDDP MVDVLYAK
Sbjct: 180 TIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEMAGIEYMNDDPAMVDVLYAK 239
Query: 889 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPMAEGR 1050
VHMKDGSNRLQELVDRVLERFQ+ GLIVKEW SVKLHATVMNTL RKDP AEGR
Sbjct: 240 VHMKDGSNRLQELVDRVLERFQSLGLIVKEWTSVKLHATVMNTLLRKDPNAEGR 293
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,289,003
Number of extensions: 905286
Number of successful extensions: 3027
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3024
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013789
(1050 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001185729.1| activating signal cointegrator 1 complex sub... 545 e-155
Alignment gi|NP_001185727.1| activating signal cointegrator 1 complex sub... 545 e-155
Alignment gi|NP_057031.2| activating signal cointegrator 1 complex subuni... 545 e-155
Alignment gi|NP_001185728.1| activating signal cointegrator 1 complex sub... 529 e-150
>ref|NP_001185729.1| activating signal cointegrator 1 complex subunit 1 isoform b [Homo
sapiens].
Length = 357
Score = 545 bits (1404), Expect = e-155
Identities = 266/294 (90%), Positives = 285/294 (96%)
Frame = +1
Query: 169 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 348
MEVLRPQL+RI GR YRKNP+QEQTYQHEE+++D+YQG MECA+EPC+AYEV QTPQGFR
Sbjct: 1 MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR 60
Query: 349 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 528
T++APSLLYKHIVGKRGDTRKK+E+ETKTSI+IPKPGQ+GEIVITGQHR+GVISARTRI
Sbjct: 61 STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI 120
Query: 529 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 708
DVLL TFRRKQPFTHFLAFFLNEVEVQE FL+FQEEVL KCSMDHGVDS+IFQNPKKLHL
Sbjct: 121 DVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHL 180
Query: 709 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 888
TIGMLVLLSE+EIQQTCEMLQQCKEEFI+DISGGKPLEVEMAGIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 240
Query: 889 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPMAEGR 1050
VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDP AEGR
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGR 294
>ref|NP_001185727.1| activating signal cointegrator 1 complex subunit 1 isoform b [Homo
sapiens].
Length = 357
Score = 545 bits (1404), Expect = e-155
Identities = 266/294 (90%), Positives = 285/294 (96%)
Frame = +1
Query: 169 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 348
MEVLRPQL+RI GR YRKNP+QEQTYQHEE+++D+YQG MECA+EPC+AYEV QTPQGFR
Sbjct: 1 MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR 60
Query: 349 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 528
T++APSLLYKHIVGKRGDTRKK+E+ETKTSI+IPKPGQ+GEIVITGQHR+GVISARTRI
Sbjct: 61 STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI 120
Query: 529 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 708
DVLL TFRRKQPFTHFLAFFLNEVEVQE FL+FQEEVL KCSMDHGVDS+IFQNPKKLHL
Sbjct: 121 DVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHL 180
Query: 709 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 888
TIGMLVLLSE+EIQQTCEMLQQCKEEFI+DISGGKPLEVEMAGIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 240
Query: 889 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPMAEGR 1050
VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDP AEGR
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGR 294
>ref|NP_057031.2| activating signal cointegrator 1 complex subunit 1 isoform b [Homo
sapiens].
Length = 357
Score = 545 bits (1404), Expect = e-155
Identities = 266/294 (90%), Positives = 285/294 (96%)
Frame = +1
Query: 169 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 348
MEVLRPQL+RI GR YRKNP+QEQTYQHEE+++D+YQG MECA+EPC+AYEV QTPQGFR
Sbjct: 1 MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR 60
Query: 349 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 528
T++APSLLYKHIVGKRGDTRKK+E+ETKTSI+IPKPGQ+GEIVITGQHR+GVISARTRI
Sbjct: 61 STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI 120
Query: 529 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 708
DVLL TFRRKQPFTHFLAFFLNEVEVQE FL+FQEEVL KCSMDHGVDS+IFQNPKKLHL
Sbjct: 121 DVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHL 180
Query: 709 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 888
TIGMLVLLSE+EIQQTCEMLQQCKEEFI+DISGGKPLEVEMAGIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 240
Query: 889 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPMAEGR 1050
VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDP AEGR
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGR 294
>ref|NP_001185728.1| activating signal cointegrator 1 complex subunit 1 isoform a [Homo
sapiens].
Length = 400
Score = 529 bits (1362), Expect = e-150
Identities = 265/322 (82%), Positives = 285/322 (88%), Gaps = 28/322 (8%)
Frame = +1
Query: 169 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 348
MEVLRPQL+RI GR YRKNP+QEQTYQHEE+++D+YQG MECA+EPC+AYEV QTPQGFR
Sbjct: 1 MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR 60
Query: 349 CTVKAPSLLY----------------------------KHIVGKRGDTRKKLEVETKTSI 444
T++APSLLY +HIVGKRGDTRKK+E+ETKTSI
Sbjct: 61 STLRAPSLLYNLIHLNTSNDCGFQKITLDCQNIYTWKSRHIVGKRGDTRKKIEMETKTSI 120
Query: 445 TIPKPGQEGEIVITGQHRSGVISARTRIDVLLLTFRRKQPFTHFLAFFLNEVEVQERFLK 624
+IPKPGQ+GEIVITGQHR+GVISARTRIDVLL TFRRKQPFTHFLAFFLNEVEVQE FL+
Sbjct: 121 SIPKPGQDGEIVITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLR 180
Query: 625 FQEEVLEKCSMDHGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEMLQQCKEEFIDDIS 804
FQEEVL KCSMDHGVDS+IFQNPKKLHLTIGMLVLLSE+EIQQTCEMLQQCKEEFI+DIS
Sbjct: 181 FQEEVLAKCSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTCEMLQQCKEEFINDIS 240
Query: 805 GGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWN 984
GGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWN
Sbjct: 241 GGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWN 300
Query: 985 SVKLHATVMNTLFRKDPMAEGR 1050
SVKLHATVMNTLFRKDP AEGR
Sbjct: 301 SVKLHATVMNTLFRKDPNAEGR 322
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,534,403
Number of extensions: 1075808
Number of successful extensions: 3358
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3354
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013789
(1050 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 359 2e-96
>Sscrofa_Chr14
|| Length = 153851969
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 478 gtaatcactggtcagcatcgaagtggtgtaatttctgcccgaactcggattgatgttctt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81076421 gtaatcactggtcagcatcgaagtggtgtaatttctgcccgaactcggattgatgttctt 81076362
Query: 538 ttgctcacttttcgaagaaagcagcccttcactcacttccttgcctttttcctcaatgaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81076361 ttgctcacttttcgaagaaagcagcccttcactcacttccttgcctttttcctcaatgaa 81076302
Query: 598 gttgaagttcaggagcgatttctaaagttccaggaggaagtactggagaagtgctccatg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81076301 gttgaagttcaggagcgatttctaaagttccaggaggaagtactggagaagtgctccatg 81076242
Query: 658 g 658
|
Sbjct: 81076241 g 81076241
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 478 gtaatcactggtcagcatcgaagtggtgtaatttctgcccgaactcggattgatgttctt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81147665 gtaatcactggtcagcatcgaagtggtgtaatttctgcccgaactcggattgatgttctt 81147724
Query: 538 ttgctcacttttcgaagaaagcagcccttcactcacttccttgcctttttcctcaatgaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81147725 ttgctcacttttcgaagaaagcagcccttcactcacttccttgcctttttcctcaatgaa 81147784
Query: 598 gttgaagttcaggagcgatttctaaagttccaggaggaagtactggagaagtgctccatg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81147785 gttgaagttcaggagcgatttctaaagttccaggaggaagtactggagaagtgctccatg 81147844
Query: 658 g 658
|
Sbjct: 81147845 g 81147845
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 137 aggatttcgctggactgtttggagaaagtgtcatggaagttctgcgtccacagcttctaa 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81087821 aggatttcgctggactgtttggagaaagtgtcatggaagttctgcgtccacagcttctaa 81087762
Query: 197 gaatcggtggccgggtttacaggaagaatcccatccaagaacagacttatcaacatgaag 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81087761 gaatcggtggccgggtttacaggaagaatcccatccaagaacagacttatcaacatgaag 81087702
Query: 257 aagaagacgatgattattatca 278
||||||||||||||||||||||
Sbjct: 81087701 aagaagacgatgattattatca 81087680
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 657 ggaccacggggttgatagcaccattttccagaatcctaaaaagcttcacctaactattgg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81039545 ggaccacggggttgatagcaccattttccagaatcctaaaaagcttcacctaactattgg 81039486
Query: 717 gatgttggtgcttttgagtgagcaagagatccagcagacctgtgagatgctacagcagtg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81039485 gatgttggtgcttttgagtgagcaagagatccagcagacctgtgagatgctacagcagtg 81039426
Query: 777 taaagaagaattcattga 794
||||||||||||||||||
Sbjct: 81039425 taaagaagaattcattga 81039408
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 657 ggaccacggggttgatagcaccattttccagaatcctaaaaagcttcacctaactattgg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81184562 ggaccacggggttgatagcaccattttccagaatcctaaaaagcttcacctaactattgg 81184621
Query: 717 gatgttggtgcttttgagtgagcaagagatccagcagacctgtgagatgctacagcagtg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81184622 gatgttggtgcttttgagtgagcaagagatccagcagacctgtgagatgctacagcagtg 81184681
Query: 777 taaagaagaattcattga 794
||||||||||||||||||
Sbjct: 81184682 taaagaagaattcattga 81184699
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 913 aggctgcaggaattggttgatcgagtgctagaacgttttcaggcatctggattgatagtg 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81015224 aggctgcaggaattggttgatcgagtgctagaacgttttcaggcatctggattgatagtg 81015165
Query: 973 aaagagtggaatagtgtgaaactccatgctacagtcatgaatactctattcaggaaagac 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81015164 aaagagtggaatagtgtgaaactccatgctacagtcatgaatactctattcaggaaagac 81015105
Query: 1033 ccca 1036
||||
Sbjct: 81015104 ccca 81015101
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 795 tgacatttctgggggcaaacccctggaagtagagatggcagggatagaatacatgaatga 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81031799 tgacatttctgggggcaaacccctggaagtagagatggcagggatagaatacatgaatga 81031740
Query: 855 tgatcctggcatggtggatgttctttatgccaaagtccacatgaaagatggctccaacag 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81031739 tgatcctggcatggtggatgttctttatgccaaagtccacatgaaagatggctccaacag 81031680
Query: 915 g 915
|
Sbjct: 81031679 g 81031679
Score = 226 bits (114), Expect = 2e-56
Identities = 121/122 (99%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 795 tgacatttctgggggcaaacccctgg-aagtagagatggcagggatagaatacatgaatg 853
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 140232772 tgacatttctgggggcaaacccctggnaagtagagatggcagggatagaatacatgaatg 140232831
Query: 854 atgatcctggcatggtggatgttctttatgccaaagtccacatgaaagatggctccaaca 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140232832 atgatcctggcatggtggatgttctttatgccaaagtccacatgaaagatggctccaaca 140232891
Query: 914 gg 915
||
Sbjct: 140232892 gg 140232893
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 279 aggcctcatggagtgcgcggaagagccctgtgaagcctacgaggtggtgcagaccccaca 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81086543 aggcctcatggagtgcgcggaagagccctgtgaagcctacgaggtggtgcagaccccaca 81086484
Query: 339 aggttttcggtgtactgtgaaggcccccagtctgctctacaag 381
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81086483 aggttttcggtgtactgtgaaggcccccagtctgctctacaag 81086441
Score = 186 bits (94), Expect = 2e-44
Identities = 97/98 (98%)
Strand = Plus / Minus
Query: 381 gcatatagttggcaaaagaggggacactcggaagaaattagaagtggagaccaaaacttc 440
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81081838 gcatatagttggcaagagaggggacactcggaagaaattagaagtggagaccaaaacttc 81081779
Query: 441 tattaccattcctaagcctggacaagaaggagaaattg 478
||||||||||||||||||||||||||||||||||||||
Sbjct: 81081778 tattaccattcctaagcctggacaagaaggagaaattg 81081741
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 68 gatggagaaagtgaggcgcagagctgaggtgtggaccgaactggtttgggatttactctt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81115040 gatggagaaagtgaggcgcagagctgaggtgtggaccgaactggtttgggatttactctt 81114981
Query: 128 tgcttgaggagg 139
||||||||||||
Sbjct: 81114980 tgcttgaggagg 81114969
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 795 tgacatttctgggggcaaacccctggaagtagagatggcagggatagaatacatgaatga 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81192308 tgacatttctgggggcaaacccctggaagtagagatggcagggatagaatacatgaatga 81192367
Query: 855 tgatc 859
|||||
Sbjct: 81192368 tgatc 81192372
Score = 127 bits (64), Expect = 1e-26
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1 gctgagctccgctctaccgccgccgggctgctgggtgggggctgggcgaggagccggcgc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81115985 gctgagctcagctctaccgccgccgggctgctgggtgggggctgggcgaggagccggcgc 81115926
Query: 61 ctttctgg 68
||||||||
Sbjct: 81115925 ctttctgg 81115918
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,266,447
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 13
Length of query: 1050
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1029
Effective length of database: 2,808,413,156
Effective search space: 2889857137524
Effective search space used: 2889857137524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)