Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013790
(1302 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069509.1| activating signal cointegrator 1 complex sub... 711 0.0
>ref|NP_001069509.1| activating signal cointegrator 1 complex subunit 1 [Bos taurus].
Length = 357
Score = 711 bits (1835), Expect = 0.0
Identities = 348/357 (97%), Positives = 355/357 (99%)
Frame = +1
Query: 100 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 279
MEVLRPQL++IGGRVYRKNPIQEQTYQHEEEDDDYYQGL+ECAEEPCE YEVVQTPQGFR
Sbjct: 1 MEVLRPQLIKIGGRVYRKNPIQEQTYQHEEEDDDYYQGLVECAEEPCETYEVVQTPQGFR 60
Query: 280 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 459
CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSI+IPKPGQEGEIVITGQHRSGV+SARTRI
Sbjct: 61 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSISIPKPGQEGEIVITGQHRSGVVSARTRI 120
Query: 460 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 639
DVLLLTFRRKQPFTHFLAFFLNE EVQERFLKFQEEVLEKCSMDHGVDS+IFQNPKKLHL
Sbjct: 121 DVLLLTFRRKQPFTHFLAFFLNEAEVQERFLKFQEEVLEKCSMDHGVDSSIFQNPKKLHL 180
Query: 640 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 819
TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEM+GIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMSGIEYMNDDPGMVDVLYAK 240
Query: 820 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 999
VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 300
Query: 1000 DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 1170
DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS
Sbjct: 301 DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 357
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,588,021
Number of extensions: 1262922
Number of successful extensions: 3398
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3395
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 329
Effective length of database: 14,207,134
Effective search space: 4674147086
Effective search space used: 4674147086
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013790
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013790
(1302 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850539.1| PREDICTED: similar to activating signal cointeg... 700 0.0
Alignment gi|XP_861711.1| PREDICTED: similar to activating signal cointeg... 690 0.0
>ref|XP_850539.1| PREDICTED: similar to activating signal cointegrator 1 complex
subunit 1 isoform 1 [Canis familiaris].
Length = 358
Score = 700 bits (1806), Expect = 0.0
Identities = 345/358 (96%), Positives = 354/358 (98%), Gaps = 1/358 (0%)
Frame = +1
Query: 100 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 279
MEVLRPQL+RIGGR+YRKNPIQEQTYQHEEED+D+YQG +ECAE+PC+AYEVVQT QGFR
Sbjct: 1 MEVLRPQLVRIGGRIYRKNPIQEQTYQHEEEDEDFYQGFVECAEDPCDAYEVVQTQQGFR 60
Query: 280 CTVKAPSLLY-KHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTR 456
CTVKAPSLLY +HIVGKRGDTRKKLEVETKTSI+IPKPGQEGEIVITGQHRSGVISARTR
Sbjct: 61 CTVKAPSLLYSEHIVGKRGDTRKKLEVETKTSISIPKPGQEGEIVITGQHRSGVISARTR 120
Query: 457 IDVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLH 636
IDVLLLTFRRKQPFTHFLAFFLNE EVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLH
Sbjct: 121 IDVLLLTFRRKQPFTHFLAFFLNEAEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLH 180
Query: 637 LTIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYA 816
LTIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYA
Sbjct: 181 LTIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYA 240
Query: 817 KVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYT 996
KVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYT
Sbjct: 241 KVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYT 300
Query: 997 ADGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 1170
ADGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS
Sbjct: 301 ADGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 358
>ref|XP_861711.1| PREDICTED: similar to activating signal cointegrator 1 complex
subunit 1 isoform 2 [Canis familiaris].
Length = 387
Score = 690 bits (1781), Expect = 0.0
Identities = 346/387 (89%), Positives = 354/387 (91%), Gaps = 30/387 (7%)
Frame = +1
Query: 100 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 279
MEVLRPQL+RIGGR+YRKNPIQEQTYQHEEED+D+YQG +ECAE+PC+AYEVVQT QGFR
Sbjct: 1 MEVLRPQLVRIGGRIYRKNPIQEQTYQHEEEDEDFYQGFVECAEDPCDAYEVVQTQQGFR 60
Query: 280 CTVKAPSLLY------------------------------KHIVGKRGDTRKKLEVETKT 369
CTVKAPSLLY KHIVGKRGDTRKKLEVETKT
Sbjct: 61 CTVKAPSLLYSDGLIYSNTSNDYGLQKITLDCQIYSKWPRKHIVGKRGDTRKKLEVETKT 120
Query: 370 SITIPKPGQEGEIVITGQHRSGVISARTRIDVLLLTFRRKQPFTHFLAFFLNEVEVQERF 549
SI+IPKPGQEGEIVITGQHRSGVISARTRIDVLLLTFRRKQPFTHFLAFFLNE EVQERF
Sbjct: 121 SISIPKPGQEGEIVITGQHRSGVISARTRIDVLLLTFRRKQPFTHFLAFFLNEAEVQERF 180
Query: 550 LKFQEEVLEKCSMDHGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEMLQQCKEEFIDD 729
LKFQEEVLEKCSMDHGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEMLQQCKEEFIDD
Sbjct: 181 LKFQEEVLEKCSMDHGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEMLQQCKEEFIDD 240
Query: 730 ISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKE 909
ISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKE
Sbjct: 241 ISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKE 300
Query: 910 WNSVKLHATVMNTLFRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKLFENFYFGTLK 1089
WNSVKLHATVMNTLFRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKLFENFYFGTLK
Sbjct: 301 WNSVKLHATVMNTLFRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKLFENFYFGTLK 360
Query: 1090 LNSIHISQRFTVDSFGNYASCGQIDFS 1170
LNSIHISQRFTVDSFGNYASCGQIDFS
Sbjct: 361 LNSIHISQRFTVDSFGNYASCGQIDFS 387
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,768,677
Number of extensions: 1303657
Number of successful extensions: 3700
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3696
Number of HSP's successfully gapped: 3
Length of query: 434
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 328
Effective length of database: 15,340,888
Effective search space: 5031811264
Effective search space used: 5031811264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013790
(1302 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359276.1| PREDICTED: activating signal cointegrator 1 ... 720 0.0
Alignment gi|XP_003361721.1| PREDICTED: hypothetical protein LOC100620794... 79 7e-15
Alignment gi|XP_003361337.1| PREDICTED: a-kinase anchor protein 7 isoform... 51 2e-06
>ref|XP_003359276.1| PREDICTED: activating signal cointegrator 1 complex subunit 1-like
[Sus scrofa].
Length = 357
Score = 720 bits (1859), Expect = 0.0
Identities = 356/357 (99%), Positives = 356/357 (99%)
Frame = +1
Query: 100 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 279
MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYY GLMECAEEPCEAYEVVQTPQGFR
Sbjct: 1 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYHGLMECAEEPCEAYEVVQTPQGFR 60
Query: 280 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 459
CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI
Sbjct: 61 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 120
Query: 460 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 639
DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL
Sbjct: 121 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 180
Query: 640 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 819
TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 240
Query: 820 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 999
VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 300
Query: 1000 DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 1170
DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS
Sbjct: 301 DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 357
>ref|XP_003361721.1| PREDICTED: hypothetical protein LOC100620794 [Sus scrofa].
Length = 109
Score = 78.6 bits (192), Expect = 7e-15
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1
Query: 1192 VKIEHPHKGSGTRNNDDISGTVXSSLGECEPQKALFP 1302
+KIEHPHKGSGTRNNDDISGTV SSLGECEPQKALFP
Sbjct: 14 IKIEHPHKGSGTRNNDDISGTVQSSLGECEPQKALFP 50
>ref|XP_003361337.1| PREDICTED: a-kinase anchor protein 7 isoform gamma-like, partial [Sus
scrofa].
Length = 206
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 12/166 (7%)
Frame = +1
Query: 634 HLTIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLY 813
H+T+ ++ LL+E E+ + L + K FI++I GKPL + G++ + G V
Sbjct: 30 HITLLVMKLLNEDEVNIGIDALLELKP-FIEEILQGKPLTLPFEGVDTFGNQVGFV---- 84
Query: 814 AKVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVM----NTLFRKDPN---- 969
K+ D N L E+ D FQ G++ E + K H T M RK +
Sbjct: 85 -KLAKGDHINPLLEIADTAKRTFQEKGVLAGESKTFKPHLTFMKLSRTPWLRKKMDKVIV 143
Query: 970 ----AEGRYNLYTADGKYIFKERESFDGRNILKLFENFYFGTLKLN 1095
G LY K +ER R ++ +F F L+ N
Sbjct: 144 AKKWCSGLAFLYAWKEKMTHRERPLRTVRKMVAIFPPFLLENLRSN 189
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,186,929
Number of extensions: 803264
Number of successful extensions: 2199
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2197
Number of HSP's successfully gapped: 3
Length of query: 434
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 332
Effective length of database: 8,804,438
Effective search space: 2923073416
Effective search space used: 2923073416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013790
(1302 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186116.1| activating signal cointegrator 1 complex sub... 622 e-178
Alignment gi|NP_081213.1| activating signal cointegrator 1 complex subuni... 622 e-178
>ref|NP_001186116.1| activating signal cointegrator 1 complex subunit 1 [Mus musculus].
Length = 356
Score = 622 bits (1603), Expect = e-178
Identities = 306/357 (85%), Positives = 328/357 (91%)
Frame = +1
Query: 100 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 279
M+VLRPQ++ GR YRKNPIQE+ YQHEE D+D+Y ME ++EPC AYEV QTP GFR
Sbjct: 1 MDVLRPQIVTFDGRNYRKNPIQEKQYQHEE-DEDFYPDSMEYSDEPCGAYEVAQTPHGFR 59
Query: 280 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 459
TV APSLLYKHIVGKRGDT+KK+EVETKTSI IPK G EGEIVITGQHR+GV+SARTRI
Sbjct: 60 ATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVITGQHRNGVVSARTRI 119
Query: 460 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 639
DVLL TFRR+QPFTHFL+FFLNEVEVQERFL FQEEVL KCS D GVDSTIFQNPKKLHL
Sbjct: 120 DVLLDTFRRRQPFTHFLSFFLNEVEVQERFLMFQEEVLRKCSKDRGVDSTIFQNPKKLHL 179
Query: 640 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 819
TIGMLVLLSEQEIQQTCE+LQ+CKEEFI+DISGG+PLEVEMAGIEYMNDDP MVDVLYAK
Sbjct: 180 TIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEMAGIEYMNDDPAMVDVLYAK 239
Query: 820 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 999
VHMKDGSNRLQELVDRVLERFQ+ GLIVKEW SVKLHATVMNTL RKDPNAEGRYNLYTA
Sbjct: 240 VHMKDGSNRLQELVDRVLERFQSLGLIVKEWTSVKLHATVMNTLLRKDPNAEGRYNLYTA 299
Query: 1000 DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 1170
DGKYIFKERESFDGRNILK FENFYFG+L+LNSIHISQRFTVDSFGNYASCG +DFS
Sbjct: 300 DGKYIFKERESFDGRNILKTFENFYFGSLRLNSIHISQRFTVDSFGNYASCGHVDFS 356
>ref|NP_081213.1| activating signal cointegrator 1 complex subunit 1 [Mus musculus].
Length = 356
Score = 622 bits (1603), Expect = e-178
Identities = 306/357 (85%), Positives = 328/357 (91%)
Frame = +1
Query: 100 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 279
M+VLRPQ++ GR YRKNPIQE+ YQHEE D+D+Y ME ++EPC AYEV QTP GFR
Sbjct: 1 MDVLRPQIVTFDGRNYRKNPIQEKQYQHEE-DEDFYPDSMEYSDEPCGAYEVAQTPHGFR 59
Query: 280 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 459
TV APSLLYKHIVGKRGDT+KK+EVETKTSI IPK G EGEIVITGQHR+GV+SARTRI
Sbjct: 60 ATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVITGQHRNGVVSARTRI 119
Query: 460 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 639
DVLL TFRR+QPFTHFL+FFLNEVEVQERFL FQEEVL KCS D GVDSTIFQNPKKLHL
Sbjct: 120 DVLLDTFRRRQPFTHFLSFFLNEVEVQERFLMFQEEVLRKCSKDRGVDSTIFQNPKKLHL 179
Query: 640 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 819
TIGMLVLLSEQEIQQTCE+LQ+CKEEFI+DISGG+PLEVEMAGIEYMNDDP MVDVLYAK
Sbjct: 180 TIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEMAGIEYMNDDPAMVDVLYAK 239
Query: 820 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 999
VHMKDGSNRLQELVDRVLERFQ+ GLIVKEW SVKLHATVMNTL RKDPNAEGRYNLYTA
Sbjct: 240 VHMKDGSNRLQELVDRVLERFQSLGLIVKEWTSVKLHATVMNTLLRKDPNAEGRYNLYTA 299
Query: 1000 DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 1170
DGKYIFKERESFDGRNILK FENFYFG+L+LNSIHISQRFTVDSFGNYASCG +DFS
Sbjct: 300 DGKYIFKERESFDGRNILKTFENFYFGSLRLNSIHISQRFTVDSFGNYASCGHVDFS 356
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,647,128
Number of extensions: 1099333
Number of successful extensions: 3204
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3200
Number of HSP's successfully gapped: 2
Length of query: 434
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 330
Effective length of database: 12,493,815
Effective search space: 4122958950
Effective search space used: 4122958950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013790
(1302 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001185729.1| activating signal cointegrator 1 complex sub... 674 0.0
Alignment gi|NP_001185727.1| activating signal cointegrator 1 complex sub... 674 0.0
Alignment gi|NP_057031.2| activating signal cointegrator 1 complex subuni... 674 0.0
Alignment gi|NP_001185728.1| activating signal cointegrator 1 complex sub... 583 e-166
>ref|NP_001185729.1| activating signal cointegrator 1 complex subunit 1 isoform b [Homo
sapiens].
Length = 357
Score = 674 bits (1739), Expect = 0.0
Identities = 328/357 (91%), Positives = 349/357 (97%)
Frame = +1
Query: 100 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 279
MEVLRPQL+RI GR YRKNP+QEQTYQHEE+++D+YQG MECA+EPC+AYEV QTPQGFR
Sbjct: 1 MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR 60
Query: 280 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 459
T++APSLLYKHIVGKRGDTRKK+E+ETKTSI+IPKPGQ+GEIVITGQHR+GVISARTRI
Sbjct: 61 STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI 120
Query: 460 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 639
DVLL TFRRKQPFTHFLAFFLNEVEVQE FL+FQEEVL KCSMDHGVDS+IFQNPKKLHL
Sbjct: 121 DVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHL 180
Query: 640 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 819
TIGMLVLLSE+EIQQTCEMLQQCKEEFI+DISGGKPLEVEMAGIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 240
Query: 820 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 999
VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 300
Query: 1000 DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 1170
+GKYIFKERESFDGRNILKLFENFYFG+LKLNSIHISQRFTVDSFGNYASCGQIDFS
Sbjct: 301 EGKYIFKERESFDGRNILKLFENFYFGSLKLNSIHISQRFTVDSFGNYASCGQIDFS 357
>ref|NP_001185727.1| activating signal cointegrator 1 complex subunit 1 isoform b [Homo
sapiens].
Length = 357
Score = 674 bits (1739), Expect = 0.0
Identities = 328/357 (91%), Positives = 349/357 (97%)
Frame = +1
Query: 100 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 279
MEVLRPQL+RI GR YRKNP+QEQTYQHEE+++D+YQG MECA+EPC+AYEV QTPQGFR
Sbjct: 1 MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR 60
Query: 280 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 459
T++APSLLYKHIVGKRGDTRKK+E+ETKTSI+IPKPGQ+GEIVITGQHR+GVISARTRI
Sbjct: 61 STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI 120
Query: 460 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 639
DVLL TFRRKQPFTHFLAFFLNEVEVQE FL+FQEEVL KCSMDHGVDS+IFQNPKKLHL
Sbjct: 121 DVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHL 180
Query: 640 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 819
TIGMLVLLSE+EIQQTCEMLQQCKEEFI+DISGGKPLEVEMAGIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 240
Query: 820 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 999
VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 300
Query: 1000 DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 1170
+GKYIFKERESFDGRNILKLFENFYFG+LKLNSIHISQRFTVDSFGNYASCGQIDFS
Sbjct: 301 EGKYIFKERESFDGRNILKLFENFYFGSLKLNSIHISQRFTVDSFGNYASCGQIDFS 357
>ref|NP_057031.2| activating signal cointegrator 1 complex subunit 1 isoform b [Homo
sapiens].
Length = 357
Score = 674 bits (1739), Expect = 0.0
Identities = 328/357 (91%), Positives = 349/357 (97%)
Frame = +1
Query: 100 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 279
MEVLRPQL+RI GR YRKNP+QEQTYQHEE+++D+YQG MECA+EPC+AYEV QTPQGFR
Sbjct: 1 MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR 60
Query: 280 CTVKAPSLLYKHIVGKRGDTRKKLEVETKTSITIPKPGQEGEIVITGQHRSGVISARTRI 459
T++APSLLYKHIVGKRGDTRKK+E+ETKTSI+IPKPGQ+GEIVITGQHR+GVISARTRI
Sbjct: 61 STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI 120
Query: 460 DVLLLTFRRKQPFTHFLAFFLNEVEVQERFLKFQEEVLEKCSMDHGVDSTIFQNPKKLHL 639
DVLL TFRRKQPFTHFLAFFLNEVEVQE FL+FQEEVL KCSMDHGVDS+IFQNPKKLHL
Sbjct: 121 DVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHL 180
Query: 640 TIGMLVLLSEQEIQQTCEMLQQCKEEFIDDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 819
TIGMLVLLSE+EIQQTCEMLQQCKEEFI+DISGGKPLEVEMAGIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 240
Query: 820 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 999
VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 300
Query: 1000 DGKYIFKERESFDGRNILKLFENFYFGTLKLNSIHISQRFTVDSFGNYASCGQIDFS 1170
+GKYIFKERESFDGRNILKLFENFYFG+LKLNSIHISQRFTVDSFGNYASCGQIDFS
Sbjct: 301 EGKYIFKERESFDGRNILKLFENFYFGSLKLNSIHISQRFTVDSFGNYASCGQIDFS 357
>ref|NP_001185728.1| activating signal cointegrator 1 complex subunit 1 isoform a [Homo
sapiens].
Length = 400
Score = 583 bits (1503), Expect = e-166
Identities = 291/349 (83%), Positives = 312/349 (89%), Gaps = 28/349 (8%)
Frame = +1
Query: 100 MEVLRPQLLRIGGRVYRKNPIQEQTYQHEEEDDDYYQGLMECAEEPCEAYEVVQTPQGFR 279
MEVLRPQL+RI GR YRKNP+QEQTYQHEE+++D+YQG MECA+EPC+AYEV QTPQGFR
Sbjct: 1 MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR 60
Query: 280 CTVKAPSLLY----------------------------KHIVGKRGDTRKKLEVETKTSI 375
T++APSLLY +HIVGKRGDTRKK+E+ETKTSI
Sbjct: 61 STLRAPSLLYNLIHLNTSNDCGFQKITLDCQNIYTWKSRHIVGKRGDTRKKIEMETKTSI 120
Query: 376 TIPKPGQEGEIVITGQHRSGVISARTRIDVLLLTFRRKQPFTHFLAFFLNEVEVQERFLK 555
+IPKPGQ+GEIVITGQHR+GVISARTRIDVLL TFRRKQPFTHFLAFFLNEVEVQE FL+
Sbjct: 121 SIPKPGQDGEIVITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLR 180
Query: 556 FQEEVLEKCSMDHGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEMLQQCKEEFIDDIS 735
FQEEVL KCSMDHGVDS+IFQNPKKLHLTIGMLVLLSE+EIQQTCEMLQQCKEEFI+DIS
Sbjct: 181 FQEEVLAKCSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTCEMLQQCKEEFINDIS 240
Query: 736 GGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWN 915
GGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWN
Sbjct: 241 GGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWN 300
Query: 916 SVKLHATVMNTLFRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKLF 1062
SVKLHATVMNTLFRKDPNAEGRYNLYTA+GKYIFKERESFDGRNILK F
Sbjct: 301 SVKLHATVMNTLFRKDPNAEGRYNLYTAEGKYIFKERESFDGRNILKSF 349
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,074,151
Number of extensions: 1295678
Number of successful extensions: 3661
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3657
Number of HSP's successfully gapped: 4
Length of query: 434
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 329
Effective length of database: 14,835,944
Effective search space: 4881025576
Effective search space used: 4881025576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013790
(1302 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 359 2e-96
gb|GL895147.2| Sus scrofa unplaced genomic scaffold ChrUScaf3031 163 3e-37
Sscrofa_Chr11 68 1e-08
>Sscrofa_Chr14
|| Length = 153851969
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 409 gtaatcactggtcagcatcgaagtggtgtaatttctgcccgaactcggattgatgttctt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81076421 gtaatcactggtcagcatcgaagtggtgtaatttctgcccgaactcggattgatgttctt 81076362
Query: 469 ttgctcacttttcgaagaaagcagcccttcactcacttccttgcctttttcctcaatgaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81076361 ttgctcacttttcgaagaaagcagcccttcactcacttccttgcctttttcctcaatgaa 81076302
Query: 529 gttgaagttcaggagcgatttctaaagttccaggaggaagtactggagaagtgctccatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81076301 gttgaagttcaggagcgatttctaaagttccaggaggaagtactggagaagtgctccatg 81076242
Query: 589 g 589
|
Sbjct: 81076241 g 81076241
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 409 gtaatcactggtcagcatcgaagtggtgtaatttctgcccgaactcggattgatgttctt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81147665 gtaatcactggtcagcatcgaagtggtgtaatttctgcccgaactcggattgatgttctt 81147724
Query: 469 ttgctcacttttcgaagaaagcagcccttcactcacttccttgcctttttcctcaatgaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81147725 ttgctcacttttcgaagaaagcagcccttcactcacttccttgcctttttcctcaatgaa 81147784
Query: 529 gttgaagttcaggagcgatttctaaagttccaggaggaagtactggagaagtgctccatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81147785 gttgaagttcaggagcgatttctaaagttccaggaggaagtactggagaagtgctccatg 81147844
Query: 589 g 589
|
Sbjct: 81147845 g 81147845
Score = 321 bits (162), Expect = 5e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 1055 agctgtttgagaacttctactttggtactctgaagctcaactcaattcacatctctcaga 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80984359 agctgtttgagaacttctactttggtactctgaagctcaactcaattcacatctctcaga 80984300
Query: 1115 ggttcactgtagacagctttggaaactacgcctcctgtggacaaattgacttctcctgag 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80984299 ggttcactgtagacagctttggaaactacgcctcctgtggacaaattgacttctcctgag 80984240
Query: 1175 gtggatcgtgaaaaacagtcaaaattgaacatcctcacaagg 1216
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80984239 gtggatcgtgaaaaacagtcaaaattgaacatcctcacaagg 80984198
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 67 caggatttcgctggactgtttggagaaagtgtcatggaagttctgcgtccacagcttcta 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81087822 caggatttcgctggactgtttggagaaagtgtcatggaagttctgcgtccacagcttcta 81087763
Query: 127 agaatcggtggccgggtttacaggaagaatcccatccaagaacagacttatcaacatgaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81087762 agaatcggtggccgggtttacaggaagaatcccatccaagaacagacttatcaacatgaa 81087703
Query: 187 gaagaagacgatgattattatca 209
|||||||||||||||||||||||
Sbjct: 81087702 gaagaagacgatgattattatca 81087680
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 588 ggaccacggggttgatagcaccattttccagaatcctaaaaagcttcacctaactattgg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81039545 ggaccacggggttgatagcaccattttccagaatcctaaaaagcttcacctaactattgg 81039486
Query: 648 gatgttggtgcttttgagtgagcaagagatccagcagacctgtgagatgctacagcagtg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81039485 gatgttggtgcttttgagtgagcaagagatccagcagacctgtgagatgctacagcagtg 81039426
Query: 708 taaagaagaattcattga 725
||||||||||||||||||
Sbjct: 81039425 taaagaagaattcattga 81039408
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 588 ggaccacggggttgatagcaccattttccagaatcctaaaaagcttcacctaactattgg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81184562 ggaccacggggttgatagcaccattttccagaatcctaaaaagcttcacctaactattgg 81184621
Query: 648 gatgttggtgcttttgagtgagcaagagatccagcagacctgtgagatgctacagcagtg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81184622 gatgttggtgcttttgagtgagcaagagatccagcagacctgtgagatgctacagcagtg 81184681
Query: 708 taaagaagaattcattga 725
||||||||||||||||||
Sbjct: 81184682 taaagaagaattcattga 81184699
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 844 aggctgcaggaattggttgatcgagtgctagaacgttttcaggcatctggattgatagtg 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81015224 aggctgcaggaattggttgatcgagtgctagaacgttttcaggcatctggattgatagtg 81015165
Query: 904 aaagagtggaatagtgtgaaactccatgctacagtcatgaatactctattcaggaaagac 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81015164 aaagagtggaatagtgtgaaactccatgctacagtcatgaatactctattcaggaaagac 81015105
Query: 964 cccaatg 970
|||||||
Sbjct: 81015104 cccaatg 81015098
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 726 tgacatttctgggggcaaacccctggaagtagagatggcagggatagaatacatgaatga 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81031799 tgacatttctgggggcaaacccctggaagtagagatggcagggatagaatacatgaatga 81031740
Query: 786 tgatcctggcatggtggatgttctttatgccaaagtccacatgaaagatggctccaacag 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81031739 tgatcctggcatggtggatgttctttatgccaaagtccacatgaaagatggctccaacag 81031680
Query: 846 g 846
|
Sbjct: 81031679 g 81031679
Score = 226 bits (114), Expect = 2e-56
Identities = 121/122 (99%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 726 tgacatttctgggggcaaacccctgg-aagtagagatggcagggatagaatacatgaatg 784
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 140232772 tgacatttctgggggcaaacccctggnaagtagagatggcagggatagaatacatgaatg 140232831
Query: 785 atgatcctggcatggtggatgttctttatgccaaagtccacatgaaagatggctccaaca 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140232832 atgatcctggcatggtggatgttctttatgccaaagtccacatgaaagatggctccaaca 140232891
Query: 845 gg 846
||
Sbjct: 140232892 gg 140232893
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 210 aggcctcatggagtgcgcggaagagccctgtgaagcctacgaggtggtgcagaccccaca 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81086543 aggcctcatggagtgcgcggaagagccctgtgaagcctacgaggtggtgcagaccccaca 81086484
Query: 270 aggttttcggtgtactgtgaaggcccccagtctgctctacaag 312
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81086483 aggttttcggtgtactgtgaaggcccccagtctgctctacaag 81086441
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 312 gcatatagttggcaagagaggggacactcggaagaaattagaagtggagaccaaaacttc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81081838 gcatatagttggcaagagaggggacactcggaagaaattagaagtggagaccaaaacttc 81081779
Query: 372 tattaccattcctaagcctggacaagaaggagaaattg 409
||||||||||||||||||||||||||||||||||||||
Sbjct: 81081778 tattaccattcctaagcctggacaagaaggagaaattg 81081741
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 970 gctgaaggcaggtacaatctctatacagcggatggcaaatatatcttcaaggaaagagaa 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81008452 gctgaaggcaggtacaatctctatacagcggatggcaaatatatcttcaaggaaagagaa 81008393
Query: 1030 tcatttgatggccgaaacattttaaag 1056
|||||||||||||||||||||||||||
Sbjct: 81008392 tcatttgatggccgaaacattttaaag 81008366
Score = 163 bits (82), Expect = 3e-37
Identities = 87/89 (97%)
Strand = Plus / Minus
Query: 1214 agggcagtggcacgcgaaacaatgatgatatcagcgggactgtgncaagttccctgggag 1273
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 80982301 agggcagtggcacgcgaaacaatgatgatatcagcgggactgtgcaaagttccctgggag 80982242
Query: 1274 agtgtgagccacagaaggcactctttcct 1302
|||||||||||||||||||||||||||||
Sbjct: 80982241 agtgtgagccacagaaggcactctttcct 80982213
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 1 ctcttgcacgccctctgcggcaggctcccattcctcctcctactttctccattttactag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81089708 ctcttgcacgccctctgcggcaggctcccattcctcctcctactttctccattttactag 81089649
Query: 61 tccctgcagg 70
||||||||||
Sbjct: 81089648 tccctgcagg 81089639
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 726 tgacatttctgggggcaaacccctggaagtagagatggcagggatagaatacatgaatga 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81192308 tgacatttctgggggcaaacccctggaagtagagatggcagggatagaatacatgaatga 81192367
Query: 786 tgatc 790
|||||
Sbjct: 81192368 tgatc 81192372
>gb|GL895147.2| Sus scrofa unplaced genomic scaffold ChrUScaf3031
Length = 14479
Score = 163 bits (82), Expect = 3e-37
Identities = 87/89 (97%)
Strand = Plus / Minus
Query: 1214 agggcagtggcacgcgaaacaatgatgatatcagcgggactgtgncaagttccctgggag 1273
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7608 agggcagtggcacgcgaaacaatgatgatatcagcgggactgtgcaaagttccctgggag 7549
Query: 1274 agtgtgagccacagaaggcactctttcct 1302
|||||||||||||||||||||||||||||
Sbjct: 7548 agtgtgagccacagaaggcactctttcct 7520
>Sscrofa_Chr11
|| Length = 87690581
Score = 67.9 bits (34), Expect = 1e-08
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1218 cagtggcacgcgaaacaatgatgatatcagcgggactgtgncaagttccctgggagagtg 1277
||||||||| ||||||||||||||||||||| ||||||| || |||||||||| |
Sbjct: 36651424 cagtggcactcgaaacaatgatgatatcagcaggactgttcaaatttccctggga-cctt 36651482
Query: 1278 tgagccacagaaggcactctttcct 1302
| |||||||||||| ||||||||||
Sbjct: 36651483 taagccacagaaggaactctttcct 36651507
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,253,771
Number of extensions: 225
Number of successful extensions: 225
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 17
Length of query: 1302
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1281
Effective length of database: 2,808,413,156
Effective search space: 3597577252836
Effective search space used: 3597577252836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)