Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013793
(935 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096691.1| reticulocalbin 1, EF-hand calcium binding do... 527 e-150
Alignment gi|NP_001029837.1| calumenin precursor [Bos taurus]. 341 5e-94
Alignment gi|NP_001039725.1| reticulocalbin-3 precursor [Bos taurus]. 302 2e-82
Alignment gi|NP_001069047.1| reticulocalbin-2 [Bos taurus]. 172 5e-43
Alignment gi|NP_001030452.1| 45 kDa calcium-binding protein precursor [Bo... 94 2e-19
Alignment gi|NP_001069444.1| centrin-3 [Bos taurus]. 54 2e-07
>ref|NP_001096691.1| reticulocalbin 1, EF-hand calcium binding domain [Bos taurus].
Length = 331
Score = 527 bits (1357), Expect = e-150
Identities = 252/260 (96%), Positives = 253/260 (97%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPTVRKERVVRPDS+LGERP EDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD
Sbjct: 30 KPTVRKERVVRPDSDLGERPAEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 89
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
RIDSDGDGFVT EELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL
Sbjct: 90 RIDSDGDGFVTTEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 149
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
GNPTEF DTSDH TFKKMLPRDERRFKAADLD DQTATREEFTAFLHPEEFEHMKEIVVL
Sbjct: 150 GNPTEFQDTSDHHTFKKMLPRDERRFKAADLDSDQTATREEFTAFLHPEEFEHMKEIVVL 209
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ETLEDIDKNGDGFVDQDEYIADMFSHEE GPEPDWVLSEREQFNEFRDLNKDGKLDKDEI
Sbjct: 210 ETLEDIDKNGDGFVDQDEYIADMFSHEESGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 269
Query: 874 RHWILPQDYDHAQAEARHLV 933
HWILPQDYDHAQAEARHLV
Sbjct: 270 SHWILPQDYDHAQAEARHLV 289
>ref|NP_001029837.1| calumenin precursor [Bos taurus].
Length = 315
Score = 341 bits (875), Expect = 5e-94
Identities = 161/260 (61%), Positives = 202/260 (77%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLG IVD
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGMIVD 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID+D DGFVT ELK+WIK QK+YIYDNV W+++D ++D ISW+EY+ TYG YL
Sbjct: 79 KIDADKDGFVTEGELKSWIKHAQKKYIYDNVENQWQEFDLNQDGLISWDEYRNVTYGTYL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 194
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
E +EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 195 EPMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEET 254
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 255 KDWILPSDYDHAEAEARHLV 274
>ref|NP_001039725.1| reticulocalbin-3 precursor [Bos taurus].
Length = 328
Score = 302 bits (774), Expect = 2e-82
Identities = 144/248 (58%), Positives = 184/248 (74%), Gaps = 3/248 (1%)
Frame = +1
Query: 199 LGERPPED-NQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRID--SDGDGFVTA 369
L E P +D + +FQYDHEAFLG+E +K FDQLT EES+ RLG+IVDR+D DGDG+V+
Sbjct: 40 LSEAPHDDAHGNFQYDHEAFLGREVAKEFDQLTPEESQARLGRIVDRMDRAGDGDGWVSL 99
Query: 370 EELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEFHDTSDH 549
EL++WI Q+R+I D+V+ W YD D+D ++ WEE + ATYG+Y EFHD D
Sbjct: 100 AELRSWIAHTQQRHIRDSVSAAWNTYDTDRDGRVGWEELRNATYGHYEPGE-EFHDVEDA 158
Query: 550 QTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDG 729
+T+KKML RDERRF+ AD DGD ATREE TAFLHPEEF HM++IV+ ETLED+D+N DG
Sbjct: 159 ETYKKMLARDERRFRVADQDGDSMATREELTAFLHPEEFPHMRDIVIAETLEDLDRNKDG 218
Query: 730 FVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHA 909
+V +EYIAD+++ E G EP WV +EREQF +FRDLNKDGKL+ E+ HW+LP D
Sbjct: 219 YVQVEEYIADLYTAEPGEEEPAWVQTEREQFRDFRDLNKDGKLNGSEVGHWVLPPAQDQP 278
Query: 910 QAEARHLV 933
EA HL+
Sbjct: 279 LVEANHLL 286
>ref|NP_001069047.1| reticulocalbin-2 [Bos taurus].
Length = 317
Score = 172 bits (435), Expect = 5e-43
Identities = 85/234 (36%), Positives = 137/234 (58%), Gaps = 2/234 (0%)
Frame = +1
Query: 238 YDHEAFLG-KEDSKTFDQLTSEESKERLGKIVDRIDSDGDGFVTAEELKTWIKRVQKRYI 414
YD EA LG +E+ + +L+ EE +RL I+ +ID D DGF+T EL +WI+ K Y
Sbjct: 39 YDREALLGGQEEVDEYVKLSPEEQHKRLKSIIKKIDLDSDGFLTESELSSWIQMSFKHYA 98
Query: 415 YDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEFH-DTSDHQTFKKMLPRDERRF 591
+ + +YD++ D +SW+EY Y + D ++ ++F+++ +D++RF
Sbjct: 99 MQEAKQQFIEYDKNSDGSVSWDEYNIQMYDRVIDFVENTALDDAEEESFRQLHLKDKKRF 158
Query: 592 KAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGFVDQDEYIADMFSH 771
+ A+ D EEF AF HPEE ++M E V+ E LE+ DK+GDGFV +E++ D
Sbjct: 159 EKANQDSGPGLNLEEFIAFEHPEEVDYMTEFVIQEALEEHDKDGDGFVSLEEFLGDYRRD 218
Query: 772 EEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHAQAEARHLV 933
+P+W+L E+++F D + DG+LD E+ W++P + AQ EARHL+
Sbjct: 219 PTASEDPEWILVEKDRFMNDYDRDADGRLDPQELLSWVVPNNQGIAQEEARHLI 272
>ref|NP_001030452.1| 45 kDa calcium-binding protein precursor [Bos taurus].
Length = 355
Score = 93.6 bits (231), Expect = 2e-19
Identities = 69/271 (25%), Positives = 128/271 (47%), Gaps = 16/271 (5%)
Frame = +1
Query: 169 KERVVRPDSELGERPPEDNQ-SFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRIDS 345
+ ++ PD G + D + + E FLGK+ + +S+ +L I ++D
Sbjct: 46 ENEILPPDHLNGVKLEMDGHLNKDFHQEVFLGKDMDDFEEDAEPRKSRRKLMVIFSKVDL 105
Query: 346 DGDGFVTAEELKTWIKRVQKRYIYDNVAKV---WKDYDRDKDDKISWEEYKQ---ATYGY 507
+ D ++A+E++ WI + + + VA+ ++ D D D +SW+EYK AT G+
Sbjct: 106 NTDRRISAKEMQKWIMQKTAEHFQEAVAESRAHFRAVDPDGDGHVSWDEYKVKFLATKGH 165
Query: 508 YLGNPTE-----FHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEH 672
E + D +T + + +R ++A + D T EF +FLHPE
Sbjct: 166 NEREVAEKIKNKWDLNIDEETQEVLENLKDRWYQADNPPPDLLLTESEFLSFLHPEHSRG 225
Query: 673 MKEIVVLETLEDIDKNGDGFVDQDEYIA---DMFSHEEGGPEPD-WVLSEREQFNEFRDL 840
M + +V E + D+D++GD + E+I+ +++G D WV + +F E D
Sbjct: 226 MLQFMVKEIIRDLDQDGDKKLSLSEFISLPVGTVENQQGQDVDDSWVRDRKREFEELIDA 285
Query: 841 NKDGKLDKDEIRHWILPQDYDHAQAEARHLV 933
N DG + E+ ++ P + A EA+ ++
Sbjct: 286 NHDGIVTMAELEDYMDPMNEFSALNEAKQMI 316
>ref|NP_001069444.1| centrin-3 [Bos taurus].
Length = 167
Score = 53.9 bits (128), Expect = 2e-07
Identities = 41/156 (26%), Positives = 72/156 (46%)
Frame = +1
Query: 295 SEESKERLGKIVDRIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKIS 474
SEE K+ + + D+D D + EL+ ++ + +V K+ KDYDR+ KI+
Sbjct: 23 SEEQKQEIKDAFELFDTDKDEAIDYHELRVAMRALGFDVKKADVLKILKDYDREATGKIT 82
Query: 475 WEEYKQATYGYYLGNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLH 654
+E++ + + L + H+ K FK D D D +
Sbjct: 83 FEDFNEVVTDWIL-------ERDPHEEILK-------AFKLFD-DDDSGKISLRNLRRVA 127
Query: 655 PEEFEHMKEIVVLETLEDIDKNGDGFVDQDEYIADM 762
E E+M + + +E+ DK+GDG ++Q+E+IA M
Sbjct: 128 RELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIM 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,929,711
Number of extensions: 826274
Number of successful extensions: 4116
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4003
Number of HSP's successfully gapped: 6
Length of query: 311
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,306,398
Effective search space: 2990037182
Effective search space used: 2990037182
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013793
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013793
(935 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533162.2| PREDICTED: similar to Reticulocalbin 1 precurso... 416 e-116
Alignment gi|XP_858738.1| PREDICTED: similar to calumenin precursor isofo... 345 3e-95
Alignment gi|XP_858614.1| PREDICTED: similar to calumenin isoform 2 isofo... 345 3e-95
Alignment gi|XP_849335.1| PREDICTED: similar to calumenin precursor isofo... 343 1e-94
Alignment gi|XP_858698.1| PREDICTED: similar to calumenin precursor isofo... 342 2e-94
Alignment gi|XP_858778.1| PREDICTED: similar to calumenin isoform 2 isofo... 342 3e-94
Alignment gi|XP_858570.1| PREDICTED: similar to calumenin isoform 2 isofo... 341 5e-94
Alignment gi|XP_858657.1| PREDICTED: similar to calumenin precursor isofo... 337 1e-92
Alignment gi|XP_541494.2| PREDICTED: similar to reticulocalbin 3, EF-hand... 307 8e-84
Alignment gi|XP_544790.2| PREDICTED: similar to reticulocalbin 2 [Canis f... 170 2e-42
>ref|XP_533162.2| PREDICTED: similar to Reticulocalbin 1 precursor [Canis
familiaris].
Length = 435
Score = 416 bits (1069), Expect = e-116
Identities = 197/206 (95%), Positives = 198/206 (96%)
Frame = +1
Query: 316 LGKIVDRIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQA 495
L KIVDRIDSDGD FVT EELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQA
Sbjct: 188 LRKIVDRIDSDGDSFVTTEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQA 247
Query: 496 TYGYYLGNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHM 675
TYGYYLGNP EF D+ DH TFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHM
Sbjct: 248 TYGYYLGNPAEFQDSLDHHTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHM 307
Query: 676 KEIVVLETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGK 855
KEIVVLETLEDIDKNGDGFVDQDEYIADMFSHEE GPEPDWVLSEREQFNEFRDLNKDGK
Sbjct: 308 KEIVVLETLEDIDKNGDGFVDQDEYIADMFSHEENGPEPDWVLSEREQFNEFRDLNKDGK 367
Query: 856 LDKDEIRHWILPQDYDHAQAEARHLV 933
LDKDEIRHWILPQDYDHAQAEARHLV
Sbjct: 368 LDKDEIRHWILPQDYDHAQAEARHLV 393
>ref|XP_858738.1| PREDICTED: similar to calumenin precursor isoform 7 [Canis
familiaris].
Length = 319
Score = 345 bits (886), Expect = 3e-95
Identities = 163/260 (62%), Positives = 203/260 (78%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLGKIV
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGKIVS 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT +ELK WIK QKR+IY++V + WK +D ++D +SWEEYK ATYGY L
Sbjct: 79 KIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
G+ D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 GSTFYDPDPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 198
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 199 ETMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEET 258
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 259 KDWILPSDYDHAEAEARHLV 278
>ref|XP_858614.1| PREDICTED: similar to calumenin isoform 2 isoform 4 [Canis
familiaris].
Length = 321
Score = 345 bits (885), Expect = 3e-95
Identities = 163/262 (62%), Positives = 203/262 (77%), Gaps = 2/262 (0%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLG IVD
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGMIVD 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT ELK+WIK QK+YIYDNV W ++D ++D ISW+EY+ TYG YL
Sbjct: 79 KIDVDKDGFVTEGELKSWIKHAQKKYIYDNVENQWHEFDMNQDGLISWDEYRNVTYGTYL 138
Query: 514 GNPTEFHDTS--DHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIV 687
G +F+D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IV
Sbjct: 139 GKGQDFYDPDPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIV 198
Query: 688 VLETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKD 867
V ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+
Sbjct: 199 VQETMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKE 258
Query: 868 EIRHWILPQDYDHAQAEARHLV 933
E + WILP DYDHA+AEARHLV
Sbjct: 259 ETKDWILPSDYDHAEAEARHLV 280
>ref|XP_849335.1| PREDICTED: similar to calumenin precursor isoform 2 [Canis
familiaris].
Length = 315
Score = 343 bits (881), Expect = 1e-94
Identities = 163/260 (62%), Positives = 203/260 (78%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLGKIV
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGKIVS 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT +ELK WIK QKR+IY++V + WK +D ++D +SWEEYK ATYGY L
Sbjct: 79 KIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 194
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 195 ETMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEET 254
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 255 KDWILPSDYDHAEAEARHLV 274
>ref|XP_858698.1| PREDICTED: similar to calumenin precursor isoform 6 [Canis
familiaris].
Length = 319
Score = 342 bits (878), Expect = 2e-94
Identities = 162/260 (62%), Positives = 201/260 (77%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLGKIV
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGKIVS 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT +ELK WIK QKR+IY++V + WK +D ++D +SWEEYK ATYGY L
Sbjct: 79 KIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DLAINDPDPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 198
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 199 ETMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEET 258
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 259 KDWILPSDYDHAEAEARHLV 278
>ref|XP_858778.1| PREDICTED: similar to calumenin isoform 2 isoform 8 [Canis
familiaris].
Length = 315
Score = 342 bits (877), Expect = 3e-94
Identities = 162/260 (62%), Positives = 201/260 (77%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLG IVD
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGMIVD 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT ELK+WIK QK+YIYDNV W ++D ++D ISW+EY+ TYG YL
Sbjct: 79 KIDVDKDGFVTEGELKSWIKHAQKKYIYDNVENQWHEFDMNQDGLISWDEYRNVTYGTYL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 194
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 195 ETMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEET 254
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 255 KDWILPSDYDHAEAEARHLV 274
>ref|XP_858570.1| PREDICTED: similar to calumenin isoform 2 isoform 3 [Canis
familiaris].
Length = 317
Score = 341 bits (875), Expect = 5e-94
Identities = 162/260 (62%), Positives = 200/260 (76%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLG IVD
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGMIVD 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT ELK+WIK QK+YIYDNV W ++D ++D ISW+EY+ TYG YL
Sbjct: 79 KIDVDKDGFVTEGELKSWIKHAQKKYIYDNVENQWHEFDMNQDGLISWDEYRNVTYGTYL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
G D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 GKRRS--DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 196
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 197 ETMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEET 256
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 257 KDWILPSDYDHAEAEARHLV 276
>ref|XP_858657.1| PREDICTED: similar to calumenin precursor isoform 5 [Canis
familiaris].
Length = 320
Score = 337 bits (863), Expect = 1e-92
Identities = 161/261 (61%), Positives = 200/261 (76%), Gaps = 1/261 (0%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLGKIV
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGKIVS 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT +ELK WIK QKR+IY++V + WK +D ++D +SWEEYK ATYGY L
Sbjct: 79 KIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVL 138
Query: 514 GNPTEFHDTSDHQ-TFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVV 690
D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DLDAHLLPRPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVV 198
Query: 691 LETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDE 870
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 199 QETMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEE 258
Query: 871 IRHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 259 TKDWILPSDYDHAEAEARHLV 279
>ref|XP_541494.2| PREDICTED: similar to reticulocalbin 3, EF-hand calcium binding
domain [Canis familiaris].
Length = 328
Score = 307 bits (787), Expect = 8e-84
Identities = 147/254 (57%), Positives = 185/254 (72%), Gaps = 3/254 (1%)
Frame = +1
Query: 181 VRPDSELGERPPED-NQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRID--SDG 351
V + L E P +D + +FQYDHEAFLG+E +K FDQL+ EES+ RLG+IVDR+D DG
Sbjct: 34 VHQTAPLSEAPHDDAHGNFQYDHEAFLGREVAKEFDQLSPEESRARLGRIVDRMDRAGDG 93
Query: 352 DGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEF 531
DG+V+ EL+ WI Q+R+I D+V+ W YD D+D ++ WEE + ATYG+Y EF
Sbjct: 94 DGWVSLAELRAWISHTQQRHIRDSVSAAWNTYDTDRDGRVGWEELRNATYGHYAPGE-EF 152
Query: 532 HDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDI 711
HD D +T+KKML RDERRF+ AD DGD ATREE TAFLHPEEF HM++IV+ ETLED+
Sbjct: 153 HDVEDAETYKKMLARDERRFRVADQDGDSMATREELTAFLHPEEFPHMRDIVIAETLEDL 212
Query: 712 DKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILP 891
DKN DG+V DEYIAD++S E G EP WV +EREQF +FRDLNKDG+LD E+ HW+LP
Sbjct: 213 DKNKDGYVQVDEYIADLYSAEPGEEEPAWVQTEREQFRDFRDLNKDGRLDGSEVGHWVLP 272
Query: 892 QDYDHAQAEARHLV 933
D EA HL+
Sbjct: 273 PAQDQPLVEANHLL 286
>ref|XP_544790.2| PREDICTED: similar to reticulocalbin 2 [Canis familiaris].
Length = 317
Score = 170 bits (431), Expect = 2e-42
Identities = 82/242 (33%), Positives = 138/242 (57%), Gaps = 1/242 (0%)
Frame = +1
Query: 211 PPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRIDSDGDGFVTAEELKTWI 390
P +++S+ G+E+ + +L+ EE +RL I+ +ID D DGF+T EL +WI
Sbjct: 31 PQGEHRSYYVRVALLCGQEEVDEYVKLSPEEQHKRLKSIIQKIDLDSDGFLTESELSSWI 90
Query: 391 KRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLG-NPTEFHDTSDHQTFKKM 567
+ K Y + + +YD++ D +SW+EY Y + + D ++ ++F+++
Sbjct: 91 QMSFKHYAMQEAKQQFVEYDKNNDGSVSWDEYNIQMYDRVIDFDENTALDDAEEESFRQL 150
Query: 568 LPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGFVDQDE 747
+D++RF+ A+ D EEF AF HPEE ++M E V+ E LE+ DKNGDGFV +E
Sbjct: 151 HLKDKKRFEKANQDSSPGLNLEEFIAFEHPEEVDYMTEFVIQEALEEHDKNGDGFVSLEE 210
Query: 748 YIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHAQAEARH 927
++ D +P+W+L E+++F D + DG+LD E+ W++P + AQ EA H
Sbjct: 211 FLGDYRRDPTANEDPEWILVEKDRFLNDYDKDNDGRLDPQELLSWVVPNNQGIAQEEALH 270
Query: 928 LV 933
L+
Sbjct: 271 LI 272
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,585,539
Number of extensions: 872044
Number of successful extensions: 4192
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4051
Number of HSP's successfully gapped: 15
Length of query: 311
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 208
Effective length of database: 15,440,896
Effective search space: 3211706368
Effective search space used: 3211706368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013793
(935 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122949.2| PREDICTED: reticulocalbin-1-like isoform 1 [... 586 e-168
Alignment gi|XP_003353965.1| PREDICTED: reticulocalbin-1-like isoform 2 [... 545 e-155
Alignment gi|XP_003134753.1| PREDICTED: calumenin isoform 2 [Sus scrofa]. 344 5e-95
Alignment gi|XP_003127376.1| PREDICTED: reticulocalbin-3-like [Sus scrofa]. 304 4e-83
Alignment gi|XP_001928990.2| PREDICTED: reticulocalbin-2 [Sus scrofa]. 175 4e-44
Alignment gi|XP_003356156.1| PREDICTED: LOW QUALITY PROTEIN: 45 kDa calci... 92 5e-19
Alignment gi|XP_003123825.1| PREDICTED: centrin-3 [Sus scrofa]. 55 7e-08
>ref|XP_003122949.2| PREDICTED: reticulocalbin-1-like isoform 1 [Sus scrofa].
Length = 406
Score = 586 bits (1511), Expect = e-168
Identities = 285/311 (91%), Positives = 285/311 (91%)
Frame = +1
Query: 1 IPELPPSSLARCFPAGRALLPTMACXXXXXXXXXXXXXXXXXXXXXXXXXXKPTVRKERV 180
IPELPPSSLARCFPAGRALLPTMAC KPTVRKERV
Sbjct: 54 IPELPPSSLARCFPAGRALLPTMACGGRGRRLGLALGLLLALVLAPPTLRAKPTVRKERV 113
Query: 181 VRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRIDSDGDGF 360
VRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRIDSDGDGF
Sbjct: 114 VRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRIDSDGDGF 173
Query: 361 VTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEFHDT 540
VTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEFHDT
Sbjct: 174 VTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEFHDT 233
Query: 541 SDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKN 720
SDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKN
Sbjct: 234 SDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKN 293
Query: 721 GDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDY 900
GDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDY
Sbjct: 294 GDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDY 353
Query: 901 DHAQAEARHLV 933
DHAQAEARHLV
Sbjct: 354 DHAQAEARHLV 364
>ref|XP_003353965.1| PREDICTED: reticulocalbin-1-like isoform 2 [Sus scrofa].
Length = 331
Score = 545 bits (1403), Expect = e-155
Identities = 260/260 (100%), Positives = 260/260 (100%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD
Sbjct: 30 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 89
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL
Sbjct: 90 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 149
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL
Sbjct: 150 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 209
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI
Sbjct: 210 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 269
Query: 874 RHWILPQDYDHAQAEARHLV 933
RHWILPQDYDHAQAEARHLV
Sbjct: 270 RHWILPQDYDHAQAEARHLV 289
>ref|XP_003134753.1| PREDICTED: calumenin isoform 2 [Sus scrofa].
Length = 315
Score = 344 bits (882), Expect = 5e-95
Identities = 162/260 (62%), Positives = 203/260 (78%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLG IVD
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGMIVD 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID+D DGFVT ELK+WIK QK+YIYDNV W+++D ++D ISW+EY+ TYG YL
Sbjct: 79 KIDADKDGFVTEGELKSWIKHAQKKYIYDNVENQWQEFDMNQDGLISWDEYRNVTYGTYL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 194
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 195 ETMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEET 254
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 255 KDWILPSDYDHAEAEARHLV 274
>ref|XP_003127376.1| PREDICTED: reticulocalbin-3-like [Sus scrofa].
Length = 327
Score = 304 bits (779), Expect = 4e-83
Identities = 146/254 (57%), Positives = 185/254 (72%), Gaps = 3/254 (1%)
Frame = +1
Query: 181 VRPDSELGERPPED-NQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRID--SDG 351
V + L E P +D + +FQYDHEAFLG++ +K FDQL+ EES+ RLG+IVDR+D DG
Sbjct: 33 VHQAAPLSEAPHDDAHGNFQYDHEAFLGRDVAKEFDQLSPEESQARLGRIVDRMDRAGDG 92
Query: 352 DGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEF 531
DG+V+ EL+ WI Q+R+I D+V+ W YD D+D ++ WEE + ATYG+Y EF
Sbjct: 93 DGWVSLAELRAWIAHTQQRHIRDSVSSAWNTYDTDRDGRVGWEELRNATYGHYEPGE-EF 151
Query: 532 HDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDI 711
HD D +T+KKML RDERRF+ AD DGD ATREE TAFLHPEEF HM++IV+ ETLED+
Sbjct: 152 HDVEDAETYKKMLARDERRFRVADQDGDSMATREELTAFLHPEEFPHMRDIVIAETLEDL 211
Query: 712 DKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILP 891
DKN DG+V +EYIAD++S E G EP WV +EREQF +FRDLNKDGKLD E+ HW+LP
Sbjct: 212 DKNKDGYVQVEEYIADLYSPEPGEEEPAWVQTEREQFRDFRDLNKDGKLDGSEVGHWVLP 271
Query: 892 QDYDHAQAEARHLV 933
D EA HL+
Sbjct: 272 PAQDQPLVEANHLL 285
>ref|XP_001928990.2| PREDICTED: reticulocalbin-2 [Sus scrofa].
Length = 508
Score = 175 bits (443), Expect = 4e-44
Identities = 87/242 (35%), Positives = 140/242 (57%), Gaps = 2/242 (0%)
Frame = +1
Query: 214 PEDNQSFQYDHEAFLG-KEDSKTFDQLTSEESKERLGKIVDRIDSDGDGFVTAEELKTWI 390
P+ YD EA LG +E+ + +L EE ++RL I+ +ID D DGF+T EL +WI
Sbjct: 223 PQGEHRTDYDREALLGGQEEVDEYVKLAPEEQQKRLKSIIKKIDLDSDGFLTESELSSWI 282
Query: 391 KRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLG-NPTEFHDTSDHQTFKKM 567
+ K Y + + +YD++ D +SW+EY Y + + D ++ ++F+++
Sbjct: 283 QMSFKHYAMQEAKQQFVEYDKNSDGSVSWDEYNIQMYDRVIDFDENTALDDAEEESFRQL 342
Query: 568 LPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGFVDQDE 747
+D++RF A+ D D EEF AF HPEE ++M E V+ E LE+ DKNGDGFV +E
Sbjct: 343 HLKDKKRFDKANQDSDPGLNLEEFIAFEHPEEVDYMTEFVIQEALEEHDKNGDGFVSLEE 402
Query: 748 YIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHAQAEARH 927
++ D + + +P+W+L E+++F D + DG LD E+ W++P + AQ EA H
Sbjct: 403 FLGD-YRRDPTSEDPEWILVEKDRFLNDYDKDADGSLDPQELLSWVVPNNQGIAQEEALH 461
Query: 928 LV 933
L+
Sbjct: 462 LI 463
>ref|XP_003356156.1| PREDICTED: LOW QUALITY PROTEIN: 45 kDa calcium-binding protein-like
[Sus scrofa].
Length = 379
Score = 91.7 bits (226), Expect = 5e-19
Identities = 67/271 (24%), Positives = 122/271 (45%), Gaps = 16/271 (5%)
Frame = +1
Query: 169 KERVVRPDSELGERPPEDNQ-SFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRIDS 345
+E ++ PD G + D + + E FLGK+ + S+ +L I ++D
Sbjct: 70 EEEILPPDHLTGVKLEMDGHLNKDFHQEVFLGKDTGGFEEDAEPRRSRRKLMVIFSKVDL 129
Query: 346 DGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDY---DRDKDDKISWEEYKQATYGYYLG 516
+ D ++A+E++ WI + VA+ + D D D ++SW+EY+
Sbjct: 130 NTDRRISAKEMQRWIMEKTAEHFQQAVAESKMHFSAVDPDGDGRVSWDEYRVKFLASKGH 189
Query: 517 NPTEFHD--------TSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEH 672
+ E D D +T + + +R ++A D T +EF +FLHPE
Sbjct: 190 DEREIADKIKNKWDLNIDEETQEVLENLKDRWYQADSPPPDLLLTEKEFLSFLHPEHSRG 249
Query: 673 MKEIVVLETLEDIDKNGDGFVDQDEYI---ADMFSHEEGGPEPD-WVLSEREQFNEFRDL 840
M + + E + D+D++GD + E+I A +++G D WV R +F E D
Sbjct: 250 MLQFMAKEIIRDLDQDGDKRLSLPEFISLPAGTVENQQGQDIDDGWVRDRRREFEELIDA 309
Query: 841 NKDGKLDKDEIRHWILPQDYDHAQAEARHLV 933
+ DG + E+ ++ P + A EA+ ++
Sbjct: 310 DHDGIVTMAELEDYMDPMNEFSALNEAKQMI 340
>ref|XP_003123825.1| PREDICTED: centrin-3 [Sus scrofa].
Length = 167
Score = 54.7 bits (130), Expect = 7e-08
Identities = 41/156 (26%), Positives = 72/156 (46%)
Frame = +1
Query: 295 SEESKERLGKIVDRIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKIS 474
SEE K+ + + D+D D + ELK ++ + ++ K+ KDYDR+ KI+
Sbjct: 23 SEEQKQEIKDAFELFDTDKDEAIDYHELKVAMRALGFDVKKADILKILKDYDREATGKIT 82
Query: 475 WEEYKQATYGYYLGNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLH 654
+E++ + + L + H+ K FK D D D +
Sbjct: 83 FEDFNEVVTDWIL-------ERDPHEEILK-------AFKLFD-DDDSGKISLRNLRRVA 127
Query: 655 PEEFEHMKEIVVLETLEDIDKNGDGFVDQDEYIADM 762
E E+M + + +E+ DK+GDG ++Q+E+IA M
Sbjct: 128 RELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIM 163
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,983,406
Number of extensions: 535468
Number of successful extensions: 2638
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2555
Number of HSP's successfully gapped: 7
Length of query: 311
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 212
Effective length of database: 8,879,129
Effective search space: 1882375348
Effective search space used: 1882375348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013793
(935 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033063.1| reticulocalbin-1 precursor [Mus musculus]. 518 e-147
Alignment gi|NP_908942.1| calumenin isoform 2 [Mus musculus]. 341 4e-94
Alignment gi|NP_031620.1| calumenin isoform 1 [Mus musculus]. 338 3e-93
Alignment gi|NP_080831.2| reticulocalbin-3 precursor [Mus musculus]. 298 4e-81
Alignment gi|NP_036122.2| reticulocalbin-2 precursor [Mus musculus]. 174 7e-44
Alignment gi|NP_035471.1| 45 kDa calcium-binding protein precursor [Mus m... 91 1e-18
Alignment gi|NP_031710.1| centrin-3 [Mus musculus]. 55 8e-08
>ref|NP_033063.1| reticulocalbin-1 precursor [Mus musculus].
Length = 325
Score = 518 bits (1335), Expect = e-147
Identities = 245/260 (94%), Positives = 252/260 (96%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQL+ +ESKERLGKIVD
Sbjct: 24 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLSPDESKERLGKIVD 83
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
RIDSDGDG VT EELK WIKRVQKRYIYDNVAKVWKDYDRDKD+KISWEEYKQATYGYYL
Sbjct: 84 RIDSDGDGLVTTEELKLWIKRVQKRYIYDNVAKVWKDYDRDKDEKISWEEYKQATYGYYL 143
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
GNP EFHD+SDH TFKKMLPRDERRFKA+DLDGD TATREEFTAFLHPEEFEHMKEIVVL
Sbjct: 144 GNPAEFHDSSDHHTFKKMLPRDERRFKASDLDGDLTATREEFTAFLHPEEFEHMKEIVVL 203
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ETLEDIDKNGDGFVDQDEYIADMFSHE+ GPEPDWVLSEREQFN+FRDLNKDGKLDKDEI
Sbjct: 204 ETLEDIDKNGDGFVDQDEYIADMFSHEDNGPEPDWVLSEREQFNDFRDLNKDGKLDKDEI 263
Query: 874 RHWILPQDYDHAQAEARHLV 933
RHWILPQDYDHAQAEARHLV
Sbjct: 264 RHWILPQDYDHAQAEARHLV 283
>ref|NP_908942.1| calumenin isoform 2 [Mus musculus].
Length = 315
Score = 341 bits (875), Expect = 4e-94
Identities = 160/260 (61%), Positives = 203/260 (78%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D Q+F YDH+AFLG E++K+FDQLT EESKERLG IVD
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQNFDYDHDAFLGAEEAKSFDQLTPEESKERLGMIVD 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID+D DGFVT ELK+WIK QK+YIYDNV W+++D ++D ISW+EY+ TYG YL
Sbjct: 79 KIDADKDGFVTEGELKSWIKHAQKKYIYDNVENQWQEFDMNQDGLISWDEYRNVTYGTYL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 194
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 195 ETMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEET 254
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 255 KDWILPSDYDHAEAEARHLV 274
>ref|NP_031620.1| calumenin isoform 1 [Mus musculus].
Length = 315
Score = 338 bits (868), Expect = 3e-93
Identities = 160/260 (61%), Positives = 203/260 (78%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D Q+F YDH+AFLG E++K+FDQLT EESKERLGKIV
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQNFDYDHDAFLGAEEAKSFDQLTPEESKERLGKIVS 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT +ELK WIK QKR+I+++V + WK +D ++D +SWEEYK ATYGY L
Sbjct: 79 KIDDDKDGFVTVDELKGWIKFAQKRWIHEDVERQWKGHDLNEDGLVSWEEYKNATYGYVL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 194
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 195 ETMEDIDKNADGFIDLEEYIGDMYSHDGNADEPEWVKTEREQFVEFRDKNRDGKMDKEET 254
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 255 KDWILPSDYDHAEAEARHLV 274
>ref|NP_080831.2| reticulocalbin-3 precursor [Mus musculus].
Length = 328
Score = 298 bits (763), Expect = 4e-81
Identities = 143/254 (56%), Positives = 184/254 (72%), Gaps = 3/254 (1%)
Frame = +1
Query: 181 VRPDSELGERPPED-NQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRID--SDG 351
V + L E P +D + +FQYDHEAFLG++ +K FD+L+ EES+ RLG+IVDR+D D
Sbjct: 34 VHHGTPLSEAPHDDAHGNFQYDHEAFLGRDVAKEFDKLSPEESQARLGRIVDRMDLAGDS 93
Query: 352 DGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEF 531
DG+V+ EL+ WI Q+R+I D+V+ W YD D+D ++ WEE + ATYG+Y EF
Sbjct: 94 DGWVSLAELRAWIAHTQQRHIRDSVSAAWHTYDTDRDGRVGWEELRNATYGHYEPGE-EF 152
Query: 532 HDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDI 711
HD D +T+KKML RDERRF+ AD DGD ATREE TAFLHPEEF HM++IVV ETLED+
Sbjct: 153 HDVEDAETYKKMLARDERRFRVADQDGDSMATREELTAFLHPEEFPHMRDIVVAETLEDL 212
Query: 712 DKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILP 891
DKN DG+V +EYIAD++S E G EP WV +ER+QF EFRDLNKDG+LD E+ +W+LP
Sbjct: 213 DKNKDGYVQVEEYIADLYSEEPGEEEPAWVQTERQQFREFRDLNKDGRLDGSEVGYWVLP 272
Query: 892 QDYDHAQAEARHLV 933
D EA HL+
Sbjct: 273 PSQDQPLVEANHLL 286
>ref|NP_036122.2| reticulocalbin-2 precursor [Mus musculus].
Length = 320
Score = 174 bits (442), Expect = 7e-44
Identities = 87/242 (35%), Positives = 138/242 (57%), Gaps = 2/242 (0%)
Frame = +1
Query: 214 PEDNQSFQYDHEAFLG-KEDSKTFDQLTSEESKERLGKIVDRIDSDGDGFVTAEELKTWI 390
P+ YD EA LG +ED + +L EE + RL I+ +IDSD DGF+T EL WI
Sbjct: 34 PQGEHRADYDREALLGVQEDVDEYVKLGHEEQQRRLQSIIKKIDSDSDGFLTENELSQWI 93
Query: 391 KRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLG-NPTEFHDTSDHQTFKKM 567
+ K Y + + +YD++ D ++W+EY Y + + D ++ +F+++
Sbjct: 94 QMSFKHYAMQEAKQQFVEYDKNSDGAVTWDEYNIQMYDRVIDFDENTALDDTEEGSFRQL 153
Query: 568 LPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGFVDQDE 747
+D++RF+ A+ D + EEF AF HPEE ++M E V+ E LE+ DKNGDGFV +E
Sbjct: 154 HLKDKKRFEKANQDSGPGLSLEEFIAFEHPEEVDYMTEFVIQEALEEHDKNGDGFVSLEE 213
Query: 748 YIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHAQAEARH 927
++ D +P+W+L E+++F D + DG+LD E+ W++P + AQ EA H
Sbjct: 214 FLGDYRRDPTANEDPEWILVEKDRFVNDYDKDNDGRLDPQELLSWVVPNNQGIAQEEALH 273
Query: 928 LV 933
L+
Sbjct: 274 LI 275
>ref|NP_035471.1| 45 kDa calcium-binding protein precursor [Mus musculus].
Length = 361
Score = 91.3 bits (225), Expect = 1e-18
Identities = 65/273 (23%), Positives = 128/273 (46%), Gaps = 17/273 (6%)
Frame = +1
Query: 166 RKERVVRPDSELG--ERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRI 339
R+E + P L + + + + + E FLGK+ + S+ +L I ++
Sbjct: 50 REENEIMPPDHLNGVKLEMDGHLNKDFHQEVFLGKDMDGFDEDSEPRRSRRKLMVIFSKV 109
Query: 340 DSDGDGFVTAEELKTWIKRVQKRYIYDNVAKV---WKDYDRDKDDKISWEEYKQATYGYY 510
D + D ++A+E++ WI + + V + ++ D D D +SW+EYK
Sbjct: 110 DVNTDRRISAKEMQHWIMEKTAEHFQEAVKENKLHFRAVDPDGDGHVSWDEYKVKFLASK 169
Query: 511 LGNPTEFHDTS--------DHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEF 666
N E + D +T + + +R ++A + D T +EF +FLHPE
Sbjct: 170 GHNEREIAEAIKNHEELKVDEETQEVLGNLRDRWYQADNPPADLLLTEDEFLSFLHPEHS 229
Query: 667 EHMKEIVVLETLEDIDKNGDGFVDQDEYIA---DMFSHEEGGP-EPDWVLSEREQFNEFR 834
M + +V E D+D++GD + E+I+ +++G + +WV +++F E
Sbjct: 230 RGMLKFMVKEIFRDLDQDGDKQLSLPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELI 289
Query: 835 DLNKDGKLDKDEIRHWILPQDYDHAQAEARHLV 933
D N DG + +E+ +++ P + +A EA+ ++
Sbjct: 290 DSNHDGIVTMEELENYMDPMNEYNALNEAKQMI 322
>ref|NP_031710.1| centrin-3 [Mus musculus].
Length = 167
Score = 55.1 bits (131), Expect = 8e-08
Identities = 42/156 (26%), Positives = 72/156 (46%)
Frame = +1
Query: 295 SEESKERLGKIVDRIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKIS 474
SEE K+ + + D+D D + ELK ++ + +V K+ KDYDR+ KI+
Sbjct: 23 SEEQKQEIKDAFELFDTDKDQAIDYHELKVAMRALGFDVKKADVLKILKDYDREATGKIT 82
Query: 475 WEEYKQATYGYYLGNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLH 654
+E++ + + L + H+ K FK D D D +
Sbjct: 83 FEDFNEVVTDWIL-------ERDPHEEILK-------AFKLFD-DDDSGKISLRNLRRVA 127
Query: 655 PEEFEHMKEIVVLETLEDIDKNGDGFVDQDEYIADM 762
E E+M + + +E+ DK+GDG ++Q+E+IA M
Sbjct: 128 RELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIM 163
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,780,620
Number of extensions: 700270
Number of successful extensions: 3371
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3266
Number of HSP's successfully gapped: 7
Length of query: 311
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 210
Effective length of database: 12,583,923
Effective search space: 2642623830
Effective search space used: 2642623830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013793
(935 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002892.1| reticulocalbin-1 precursor [Homo sapiens]. 525 e-149
Alignment gi|NP_001186601.1| calumenin isoform d precursor [Homo sapiens]. 343 1e-94
Alignment gi|NP_001124146.1| calumenin isoform b precursor [Homo sapiens]. 343 1e-94
Alignment gi|NP_001186600.1| calumenin isoform c precursor [Homo sapiens]. 343 2e-94
Alignment gi|NP_001210.1| calumenin isoform a precursor [Homo sapiens]. 343 2e-94
Alignment gi|NP_065701.2| reticulocalbin-3 precursor [Homo sapiens]. 301 6e-82
Alignment gi|NP_001186602.1| calumenin isoform e precursor [Homo sapiens]. 253 1e-67
Alignment gi|NP_001186603.1| calumenin isoform f [Homo sapiens]. 190 1e-48
Alignment gi|NP_002893.1| reticulocalbin-2 precursor [Homo sapiens]. 176 2e-44
Alignment gi|NP_057260.2| 45 kDa calcium-binding protein isoform 2 precur... 90 3e-18
>ref|NP_002892.1| reticulocalbin-1 precursor [Homo sapiens].
Length = 331
Score = 525 bits (1352), Expect = e-149
Identities = 249/260 (95%), Positives = 254/260 (97%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLT +ESKERLGKIVD
Sbjct: 30 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTPDESKERLGKIVD 89
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
RID+DGDGFVT EELKTWIKRVQKRYI+DNVAKVWKDYDRDKDDKISWEEYKQATYGYYL
Sbjct: 90 RIDNDGDGFVTTEELKTWIKRVQKRYIFDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 149
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
GNP EFHD+SDH TFKKMLPRDERRFKAADL+GD TATREEFTAFLHPEEFEHMKEIVVL
Sbjct: 150 GNPAEFHDSSDHHTFKKMLPRDERRFKAADLNGDLTATREEFTAFLHPEEFEHMKEIVVL 209
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ETLEDIDKNGDGFVDQDEYIADMFSHEE GPEPDWVLSEREQFNEFRDLNKDGKLDKDEI
Sbjct: 210 ETLEDIDKNGDGFVDQDEYIADMFSHEENGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 269
Query: 874 RHWILPQDYDHAQAEARHLV 933
RHWILPQDYDHAQAEARHLV
Sbjct: 270 RHWILPQDYDHAQAEARHLV 289
>ref|NP_001186601.1| calumenin isoform d precursor [Homo sapiens].
Length = 323
Score = 343 bits (880), Expect = 1e-94
Identities = 162/260 (62%), Positives = 203/260 (78%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLG IVD
Sbjct: 28 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGMIVD 86
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID+D DGFVT ELK+WIK QK+YIYDNV W+++D ++D ISW+EY+ TYG YL
Sbjct: 87 KIDADKDGFVTEGELKSWIKHAQKKYIYDNVENQWQEFDMNQDGLISWDEYRNVTYGTYL 146
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 147 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 202
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 203 ETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEET 262
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 263 KDWILPSDYDHAEAEARHLV 282
>ref|NP_001124146.1| calumenin isoform b precursor [Homo sapiens].
Length = 315
Score = 343 bits (880), Expect = 1e-94
Identities = 162/260 (62%), Positives = 203/260 (78%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLG IVD
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGMIVD 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID+D DGFVT ELK+WIK QK+YIYDNV W+++D ++D ISW+EY+ TYG YL
Sbjct: 79 KIDADKDGFVTEGELKSWIKHAQKKYIYDNVENQWQEFDMNQDGLISWDEYRNVTYGTYL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 194
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 195 ETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEET 254
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 255 KDWILPSDYDHAEAEARHLV 274
>ref|NP_001186600.1| calumenin isoform c precursor [Homo sapiens].
Length = 323
Score = 343 bits (879), Expect = 2e-94
Identities = 163/260 (62%), Positives = 203/260 (78%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLGKIV
Sbjct: 28 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGKIVS 86
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT +ELK WIK QKR+IY++V + WK +D ++D +SWEEYK ATYGY L
Sbjct: 87 KIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVL 146
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 147 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 202
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 203 ETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEET 262
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 263 KDWILPSDYDHAEAEARHLV 282
>ref|NP_001210.1| calumenin isoform a precursor [Homo sapiens].
Length = 315
Score = 343 bits (879), Expect = 2e-94
Identities = 163/260 (62%), Positives = 203/260 (78%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLGKIV
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGKIVS 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT +ELK WIK QKR+IY++V + WK +D ++D +SWEEYK ATYGY L
Sbjct: 79 KIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 194
Query: 694 ETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEI 873
ET+EDIDKN DGF+D +EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E
Sbjct: 195 ETMEDIDKNADGFIDLEEYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEET 254
Query: 874 RHWILPQDYDHAQAEARHLV 933
+ WILP DYDHA+AEARHLV
Sbjct: 255 KDWILPSDYDHAEAEARHLV 274
>ref|NP_065701.2| reticulocalbin-3 precursor [Homo sapiens].
Length = 328
Score = 301 bits (771), Expect = 6e-82
Identities = 144/254 (56%), Positives = 184/254 (72%), Gaps = 3/254 (1%)
Frame = +1
Query: 181 VRPDSELGERPPED-NQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRID--SDG 351
V + L + P +D + +FQYDHEAFLG+E +K FDQLT EES+ RLG+IVDR+D DG
Sbjct: 34 VHQAAPLSDAPHDDAHGNFQYDHEAFLGREVAKEFDQLTPEESQARLGRIVDRMDRAGDG 93
Query: 352 DGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEF 531
DG+V+ EL+ WI Q+R+I D+V+ W YD D+D ++ WEE + ATYG+Y EF
Sbjct: 94 DGWVSLAELRAWIAHTQQRHIRDSVSAAWDTYDTDRDGRVGWEELRNATYGHYAPGE-EF 152
Query: 532 HDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDI 711
HD D +T+KKML RDERRF+ AD DGD ATREE TAFLHPEEF HM++IV+ ETLED+
Sbjct: 153 HDVEDAETYKKMLARDERRFRVADQDGDSMATREELTAFLHPEEFPHMRDIVIAETLEDL 212
Query: 712 DKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILP 891
D+N DG+V +EYIAD++S E G EP WV +ER+QF +FRDLNKDG LD E+ HW+LP
Sbjct: 213 DRNKDGYVQVEEYIADLYSAEPGEEEPAWVQTERQQFRDFRDLNKDGHLDGSEVGHWVLP 272
Query: 892 QDYDHAQAEARHLV 933
D EA HL+
Sbjct: 273 PAQDQPLVEANHLL 286
>ref|NP_001186602.1| calumenin isoform e precursor [Homo sapiens].
Length = 224
Score = 253 bits (647), Expect = 1e-67
Identities = 123/200 (61%), Positives = 154/200 (77%)
Frame = +1
Query: 154 KPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVD 333
KPT +K+RV + +L ++ D QSF YDH+AFLG E++KTFDQLT EESKERLGKIV
Sbjct: 20 KPTEKKDRV-HHEPQLSDKVHNDAQSFDYDHDAFLGAEEAKTFDQLTPEESKERLGKIVS 78
Query: 334 RIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYL 513
+ID D DGFVT +ELK WIK QKR+IY++V + WK +D ++D +SWEEYK ATYGY L
Sbjct: 79 KIDGDKDGFVTVDELKDWIKFAQKRWIYEDVERQWKGHDLNEDGLVSWEEYKNATYGYVL 138
Query: 514 GNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVL 693
+P D D +K+M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV
Sbjct: 139 DDP----DPDDGFNYKQMMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQ 194
Query: 694 ETLEDIDKNGDGFVDQDEYI 753
ET+EDIDKN DGF+D +EYI
Sbjct: 195 ETMEDIDKNADGFIDLEEYI 214
>ref|NP_001186603.1| calumenin isoform f [Homo sapiens].
Length = 164
Score = 190 bits (483), Expect = 1e-48
Identities = 86/123 (69%), Positives = 104/123 (84%)
Frame = +1
Query: 565 MLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGFVDQD 744
M+ RDERRFK AD DGD AT+EEFTAFLHPEE+++MK+IVV ET+EDIDKN DGF+D +
Sbjct: 1 MMVRDERRFKMADKDGDLIATKEEFTAFLHPEEYDYMKDIVVQETMEDIDKNADGFIDLE 60
Query: 745 EYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHAQAEAR 924
EYI DM+SH+ EP+WV +EREQF EFRD N+DGK+DK+E + WILP DYDHA+AEAR
Sbjct: 61 EYIGDMYSHDGNTDEPEWVKTEREQFVEFRDKNRDGKMDKEETKDWILPSDYDHAEAEAR 120
Query: 925 HLV 933
HLV
Sbjct: 121 HLV 123
>ref|NP_002893.1| reticulocalbin-2 precursor [Homo sapiens].
Length = 317
Score = 176 bits (447), Expect = 2e-44
Identities = 91/247 (36%), Positives = 144/247 (58%), Gaps = 2/247 (0%)
Frame = +1
Query: 199 LGERPPEDNQSFQYDHEAFLG-KEDSKTFDQLTSEESKERLGKIVDRIDSDGDGFVTAEE 375
LGER + YD EA LG +ED + +L EE ++RL I+ +ID D DGF+T E
Sbjct: 32 LGERRSD------YDREALLGVQEDVDEYVKLGHEEQQKRLQAIIKKIDLDSDGFLTESE 85
Query: 376 LKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLG-NPTEFHDTSDHQ 552
L +WI+ K Y + + +YD++ DD ++W+EY Y + + D ++ +
Sbjct: 86 LSSWIQMSFKHYAMQEAKQQFVEYDKNSDDTVTWDEYNIQMYDRVIDFDENTALDDAEEE 145
Query: 553 TFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGF 732
+F+K+ +D++RF+ A+ D + EEF AF HPEE ++M E V+ E LE+ DKNGDGF
Sbjct: 146 SFRKLHLKDKKRFEKANQDSGPGLSLEEFIAFEHPEEVDYMTEFVIQEALEEHDKNGDGF 205
Query: 733 VDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHAQ 912
V +E++ D +P+W+L E+++F D + DG+LD E+ W++P + AQ
Sbjct: 206 VSLEEFLGDYRWDPTANEDPEWILVEKDRFVNDYDKDNDGRLDPQELLPWVVPNNQGIAQ 265
Query: 913 AEARHLV 933
EA HL+
Sbjct: 266 EEALHLI 272
>ref|NP_057260.2| 45 kDa calcium-binding protein isoform 2 precursor [Homo sapiens].
Length = 362
Score = 90.1 bits (222), Expect = 3e-18
Identities = 61/247 (24%), Positives = 116/247 (46%), Gaps = 15/247 (6%)
Frame = +1
Query: 238 YDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRIDSDGDGFVTAEELKTWIKRVQKRYIY 417
+ E FLGK+ + S+ +L I ++D + D ++A+E++ WI +
Sbjct: 77 FHQEVFLGKDLGGFDEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQ 136
Query: 418 DNVAKV---WKDYDRDKDDKISWEEYKQATYGYYLGNPTEFHDTS--------DHQTFKK 564
+ + + ++ D D D +SW+EYK + E D D +T +
Sbjct: 137 EAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEV 196
Query: 565 MLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGFVDQD 744
+ +R ++A D T EEF +FLHPE M +V E + D+D++GD +
Sbjct: 197 LENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVP 256
Query: 745 EYIA---DMFSHEEGGP-EPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHAQ 912
E+I+ +++G + +WV +++F E D N DG + +E+ ++ P + +A
Sbjct: 257 EFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELESYMDPMNEYNAL 316
Query: 913 AEARHLV 933
EA+ ++
Sbjct: 317 NEAKQMI 323
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,749,191
Number of extensions: 843354
Number of successful extensions: 4191
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4060
Number of HSP's successfully gapped: 12
Length of query: 311
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,934,836
Effective search space: 3121380724
Effective search space used: 3121380724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013793
(935 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 636 e-180
Sscrofa_Chr06 58 9e-06
>Sscrofa_Chr02
|| Length = 162569375
Score = 636 bits (321), Expect = e-180
Identities = 321/321 (100%)
Strand = Plus / Minus
Query: 1 attcccgagctgccgccctcgtcgctcgctcggtgcttccccgcgggccgcgctctcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31214327 attcccgagctgccgccctcgtcgctcgctcggtgcttccccgcgggccgcgctctcctc 31214268
Query: 61 ccgacgatggcgtgcggcgggcgcggtcgccgcctggggctggctctggggctgctgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31214267 ccgacgatggcgtgcggcgggcgcggtcgccgcctggggctggctctggggctgctgctg 31214208
Query: 121 gcgttggtgctggcgcccccaacgctgagggccaagcccaccgtgcgcaaggaacgcgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31214207 gcgttggtgctggcgcccccaacgctgagggccaagcccaccgtgcgcaaggaacgcgtg 31214148
Query: 181 gtgcggcccgactcggagctgggagagcggccgcccgaggacaatcagagcttccagtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31214147 gtgcggcccgactcggagctgggagagcggccgcccgaggacaatcagagcttccagtac 31214088
Query: 241 gaccacgaggccttcctgggcaaggaggactccaagaccttcgaccagctcacctcggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31214087 gaccacgaggccttcctgggcaaggaggactccaagaccttcgaccagctcacctcggag 31214028
Query: 301 gagagcaaggagagactgggg 321
|||||||||||||||||||||
Sbjct: 31214027 gagagcaaggagagactgggg 31214007
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 320 ggaagattgtcgatcgaatcgacagtgacggggacggctttgttaccgctgaggagctga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31209535 ggaagattgtcgatcgaatcgacagtgacggggacggctttgttaccgctgaggagctga 31209476
Query: 380 aaacctggatcaaacgggtgcagaagagatacatctacgataatgtcgctaaagtctgga 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31209475 aaacctggatcaaacgggtgcagaagagatacatctacgataatgtcgctaaagtctgga 31209416
Query: 440 aggattatgatcgggacaaagacgataaaatttcctgggaagaatacaaacaagccacct 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31209415 aggattatgatcgggacaaagacgataaaatttcctgggaagaatacaaacaagccacct 31209356
Query: 500 acggttactacctagg 515
||||||||||||||||
Sbjct: 31209355 acggttactacctagg 31209340
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 512 taggaaaccccacggagtttcatgacacttcagatcatcaaacctttaaaaagatgctgc 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31208078 taggaaaccccacggagtttcatgacacttcagatcatcaaacctttaaaaagatgctgc 31208019
Query: 572 cacgtgatgagagaaggttcaaggctgcagacctcgatggtgaccagacagccacccgtg 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31208018 cacgtgatgagagaaggttcaaggctgcagacctcgatggtgaccagacagccacccgtg 31207959
Query: 632 aggagttcactgcctttctgcaccctgaggagtttgagcatatgaaggaaattgtggttt 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31207958 aggagttcactgcctttctgcaccctgaggagtttgagcatatgaaggaaattgtggttt 31207899
Query: 692 tgg 694
|||
Sbjct: 31207898 tgg 31207896
Score = 353 bits (178), Expect = 1e-94
Identities = 181/182 (99%)
Strand = Plus / Minus
Query: 754 gccgatatgttttcccacgaggagggtggccctgagccagactgggtgttgtcagaacgg 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31203775 gccgatatgttttcccacgaggagggtggccctgagccagactgggtgttgtcagaacgg 31203716
Query: 814 gagcagtttaatgaattccgggatctgaacaaggatgggaagctggacaaggatgagatt 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31203715 gagcagtttaatgaattccgggatctgaacaaggatgggaagctggacaaggatgagatt 31203656
Query: 874 cgccactggatcctcccgcaagactatgaccacgctcaggcagaggccaggcatctggtg 933
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 31203655 cgccactggatcctcccgcaagactatgaccacgctcaggcagaggccaggcacctggtg 31203596
Query: 934 ta 935
||
Sbjct: 31203595 ta 31203594
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 693 ggaaactctggaggacatcgacaagaacggggatggctttgtggatcaggacgagtatat 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31206327 ggaaactctggaggacatcgacaagaacggggatggctttgtggatcaggacgagtatat 31206268
Query: 753 tg 754
||
Sbjct: 31206267 tg 31206266
>Sscrofa_Chr06
|| Length = 157765593
Score = 58.0 bits (29), Expect = 9e-06
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 829 ttccgggatctgaacaaggatgggaagctggac 861
|||||||||||||||||||| ||||||||||||
Sbjct: 50339314 ttccgggatctgaacaaggacgggaagctggac 50339346
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,031,611
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 6
Length of query: 935
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 914
Effective length of database: 2,808,413,156
Effective search space: 2566889624584
Effective search space used: 2566889624584
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)