Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013797
(1038 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543740.1| PREDICTED: similar to Probable tyrosyl-tRNA syn... 387 e-107
>ref|XP_543740.1| PREDICTED: similar to Probable tyrosyl-tRNA synthetase,
mitochondrial precursor (Tyrosine--tRNA ligase) (TyrRS)
[Canis familiaris].
Length = 477
Score = 387 bits (993), Expect = e-107
Identities = 197/261 (75%), Positives = 209/261 (80%)
Frame = +2
Query: 71 MAAPMLRRVSRGRWLGTPGQSGVLPLGLRKAHSGAQGLLAVQKARGLFKEFFPERGTKTE 250
MAAPMLRR RGR GTPG SGVL LG R+A SGAQGLLAVQKARGLFKEFFPE+GTK E
Sbjct: 1 MAAPMLRRFPRGRRFGTPGVSGVLLLGQREARSGAQGLLAVQKARGLFKEFFPEKGTKVE 60
Query: 251 LPELFDRGLAGNVPQTIYCGFDPTADSXXXXXXXXXXXXXXXQRAGHNVIALVGGATARL 430
LPEL DRG +G+ PQT+YCGFDPTADS QRAGHNVIALVGGATARL
Sbjct: 61 LPELLDRG-SGSFPQTVYCGFDPTADSLHVGHLLTLLGLFHFQRAGHNVIALVGGATARL 119
Query: 431 GDPSGRTKEREALDAERVQSNXXXXXXXXXXXXXNHQQLFTNGRSWGSFTVLDNSAWYQK 610
GDPSGR KEREAL E+V+ N NHQ+LF NGR WGSFTVLDN+AWYQ
Sbjct: 120 GDPSGRPKEREALAPEQVRGNARALRRGLEAVAANHQRLFANGRPWGSFTVLDNAAWYQG 179
Query: 611 QHLVDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEFLYQVLQAYDFYYLFQHYGCR 790
QHLVDFLA VGGHFRMGTLLSR SVQ+RL+S GMSLAEFLYQVLQAYDFYYLFQHYGCR
Sbjct: 180 QHLVDFLAAVGGHFRMGTLLSRASVQARLQSAGGMSLAEFLYQVLQAYDFYYLFQHYGCR 239
Query: 791 VQLGGADQLGNIMSGYEFIHK 853
VQLGG+DQLGNI SGYEFIHK
Sbjct: 240 VQLGGSDQLGNITSGYEFIHK 260
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,095,466
Number of extensions: 1199652
Number of successful extensions: 5874
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5830
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013797
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013797
(1038 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091557.1| tyrosyl-tRNA synthetase, mitochondrial [Bos ... 421 e-118
>ref|NP_001091557.1| tyrosyl-tRNA synthetase, mitochondrial [Bos taurus].
Length = 478
Score = 421 bits (1082), Expect = e-118
Identities = 211/261 (80%), Positives = 219/261 (83%)
Frame = +2
Query: 71 MAAPMLRRVSRGRWLGTPGQSGVLPLGLRKAHSGAQGLLAVQKARGLFKEFFPERGTKTE 250
MAAPMLR +SR +WLGT SGVLPLGLR+AHS AQGLLAVQKARGLFKEFFPE+GTKTE
Sbjct: 1 MAAPMLRCISRSQWLGTQALSGVLPLGLREAHSAAQGLLAVQKARGLFKEFFPEKGTKTE 60
Query: 251 LPELFDRGLAGNVPQTIYCGFDPTADSXXXXXXXXXXXXXXXQRAGHNVIALVGGATARL 430
LPELFDRG G PQTIYCGFDPTADS QRAGHNVIALVGGATARL
Sbjct: 61 LPELFDRGTGGKFPQTIYCGFDPTADSLHVGHLLALLGLFHFQRAGHNVIALVGGATARL 120
Query: 431 GDPSGRTKEREALDAERVQSNXXXXXXXXXXXXXNHQQLFTNGRSWGSFTVLDNSAWYQK 610
GDPSGRTKEREALDAERVQSN NHQQLF NGR+WGSFTVLDNSAWYQK
Sbjct: 121 GDPSGRTKEREALDAERVQSNARALSQGLKALAANHQQLFANGRTWGSFTVLDNSAWYQK 180
Query: 611 QHLVDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEFLYQVLQAYDFYYLFQHYGCR 790
Q LV+FLA VGGHFRMGTLLSRLSVQ+RLKS EGMSLAEFLYQVLQAYDFYYLFQHYGCR
Sbjct: 181 QDLVNFLAAVGGHFRMGTLLSRLSVQTRLKSSEGMSLAEFLYQVLQAYDFYYLFQHYGCR 240
Query: 791 VQLGGADQLGNIMSGYEFIHK 853
VQLGG+DQLGNIMSGYEFIHK
Sbjct: 241 VQLGGSDQLGNIMSGYEFIHK 261
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,286,335
Number of extensions: 1163580
Number of successful extensions: 5930
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5846
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013797
(1038 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362093.1| PREDICTED: tyrosyl-tRNA synthetase, mitochon... 320 1e-87
Alignment gi|XP_003361414.1| PREDICTED: LOW QUALITY PROTEIN: tyrosyl-tRNA... 82 2e-16
>ref|XP_003362093.1| PREDICTED: tyrosyl-tRNA synthetase, mitochondrial-like, partial
[Sus scrofa].
Length = 423
Score = 320 bits (819), Expect = 1e-87
Identities = 177/242 (73%), Positives = 177/242 (73%)
Frame = +2
Query: 128 QSGVLPLGLRKAHSGAQGLLAVQKARGLFKEFFPERGTKTELPELFDRGLAGNVPQTIYC 307
QSGVLPLGLRKAHSGAQGLLAVQKARGLFKEFFPERGTKTELPELFDRGLAGNVPQTIYC
Sbjct: 1 QSGVLPLGLRKAHSGAQGLLAVQKARGLFKEFFPERGTKTELPELFDRGLAGNVPQTIYC 60
Query: 308 GFDPTADSXXXXXXXXXXXXXXXQRAGHNVIALVGGATARLGDPSGRTKEREALDAERVQ 487
GFDPTADS QRAGHNVIALVGGATARLGDPSGRTKE
Sbjct: 61 GFDPTADSLHVGHLLALLGLFHFQRAGHNVIALVGGATARLGDPSGRTKE---------- 110
Query: 488 SNXXXXXXXXXXXXXNHQQLFTNGRSWGSFTVLDNSAWYQKQHLVDFLATVGGHFRMGTL 667
NHQQLFTNGRSWGSFTVLDNSAWYQKQHLVDFLATVGG
Sbjct: 111 XXXXXXXXGLQALAANHQQLFTNGRSWGSFTVLDNSAWYQKQHLVDFLATVGG------- 163
Query: 668 LSRLSVQSRLKSPEGMSLAEFLYQVLQAYDFYYLFQHYGCRVQLGGADQLGNIMSGYEFI 847
VLQAYDFYYLFQHYGCRVQLGGADQLGNIMSGYEFI
Sbjct: 164 -------------------XXXXXVLQAYDFYYLFQHYGCRVQLGGADQLGNIMSGYEFI 204
Query: 848 HK 853
HK
Sbjct: 205 HK 206
>ref|XP_003361414.1| PREDICTED: LOW QUALITY PROTEIN: tyrosyl-tRNA synthetase,
mitochondrial-like [Sus scrofa].
Length = 508
Score = 81.6 bits (200), Expect(2) = 2e-16
Identities = 52/94 (55%), Positives = 58/94 (61%)
Frame = +2
Query: 572 SFTVLDNSAWYQKQHLVDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEFLYQVLQA 751
SF VLD SA YQ Q L FL V GH GTLLS LS+Q+RL P G + QVLQ
Sbjct: 212 SFAVLDISALYQMQRL-SFLEAVRGHIHTGTLLSPLSLQTRL--PTGKPRRQEFRQVLQL 268
Query: 752 YDFYYLFQHYGCRVQLGGADQLGNIMSGYEFIHK 853
DFY RV LGG+DQL +I+SGYEFIHK
Sbjct: 269 PDFY--------RVPLGGSDQLSHIISGYEFIHK 294
Score = 22.3 bits (46), Expect(2) = 2e-16
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 525 WRLITSSFSLTGEAGA 572
WRLI+SS SLT + A
Sbjct: 199 WRLISSSSSLTSSSFA 214
Score = 60.8 bits (146), Expect = 1e-09
Identities = 40/91 (43%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = +2
Query: 41 SQHPLRASAKMAAPMLRRVSRGRWLGTPGQSGVLP-LGLRKA------HSGAQGLLAVQK 199
S P +S A+P RR W P G++P +G A H G QG LA+ K
Sbjct: 101 SSSPSSSSEPGASPRWRRPRCAAW---PRAGGLVPQVGQESAPRAVAAHXGNQGPLAIPK 157
Query: 200 ARGLFKEFFPERGTKTELPELFDRGLAGNVP 292
ARGL E FPE GTK ELPELF L G P
Sbjct: 158 ARGLITELFPETGTKRELPELFHHSLVGARP 188
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,686,967
Number of extensions: 752070
Number of successful extensions: 3776
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3735
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013797
(1038 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_937889.1| tyrosyl-tRNA synthetase, mitochondrial precurso... 357 8e-99
>ref|NP_937889.1| tyrosyl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 472
Score = 357 bits (916), Expect = 8e-99
Identities = 184/261 (70%), Positives = 199/261 (76%)
Frame = +2
Query: 71 MAAPMLRRVSRGRWLGTPGQSGVLPLGLRKAHSGAQGLLAVQKARGLFKEFFPERGTKTE 250
MAAPMLRR+ R QS V G R GA+G+L +ARGLFKEFFPE GTKTE
Sbjct: 1 MAAPMLRRLCR------VPQSLVWLRGSRAVRPGARGMLVAPRARGLFKEFFPESGTKTE 54
Query: 251 LPELFDRGLAGNVPQTIYCGFDPTADSXXXXXXXXXXXXXXXQRAGHNVIALVGGATARL 430
LPELFDR AG+ PQT+YCGFDPT DS QRAGHNVIALVGG+TA L
Sbjct: 55 LPELFDRRRAGSSPQTVYCGFDPTGDSLHVGHLLTLLGLFHFQRAGHNVIALVGGSTALL 114
Query: 431 GDPSGRTKEREALDAERVQSNXXXXXXXXXXXXXNHQQLFTNGRSWGSFTVLDNSAWYQK 610
GDPSGRTK REAL AE V++N NH +LF +GR WGSFTVLDN+AW+Q+
Sbjct: 115 GDPSGRTKGREALSAECVRANAHALRRGLEALAANHARLFADGRPWGSFTVLDNAAWFQE 174
Query: 611 QHLVDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEFLYQVLQAYDFYYLFQHYGCR 790
QHLVDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEF YQVLQAYDFYYLFQHYGCR
Sbjct: 175 QHLVDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEFFYQVLQAYDFYYLFQHYGCR 234
Query: 791 VQLGGADQLGNIMSGYEFIHK 853
VQLGG+DQLGNIMSGYEFIHK
Sbjct: 235 VQLGGSDQLGNIMSGYEFIHK 255
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,525,899
Number of extensions: 963434
Number of successful extensions: 4244
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4208
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013797
(1038 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035526.1| tyrosyl-tRNA synthetase, mitochondrial precu... 397 e-111
>ref|NP_001035526.1| tyrosyl-tRNA synthetase, mitochondrial precursor [Homo sapiens].
Length = 477
Score = 397 bits (1021), Expect = e-111
Identities = 203/261 (77%), Positives = 213/261 (81%)
Frame = +2
Query: 71 MAAPMLRRVSRGRWLGTPGQSGVLPLGLRKAHSGAQGLLAVQKARGLFKEFFPERGTKTE 250
MAAP+LR S GRW GT S +LPLGLRKAHSGAQGLLA QKARGLFK+FFPE GTK E
Sbjct: 1 MAAPILRSFSWGRWSGTLNLSVLLPLGLRKAHSGAQGLLAAQKARGLFKDFFPETGTKIE 60
Query: 251 LPELFDRGLAGNVPQTIYCGFDPTADSXXXXXXXXXXXXXXXQRAGHNVIALVGGATARL 430
LPELFDRG A + PQTIYCGFDPTADS QRAGHNVIALVGGATARL
Sbjct: 61 LPELFDRGTA-SFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARL 119
Query: 431 GDPSGRTKEREALDAERVQSNXXXXXXXXXXXXXNHQQLFTNGRSWGSFTVLDNSAWYQK 610
GDPSGRTKEREAL+ ERV++N NHQQLFT+GRSWGSFTVLDNSAWYQK
Sbjct: 120 GDPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQK 179
Query: 611 QHLVDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEFLYQVLQAYDFYYLFQHYGCR 790
QHLVDFLA VGGHFRMGTLLSR SVQ RLKSPEGMSLAEF YQVLQAYDFYYLFQ YGCR
Sbjct: 180 QHLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCR 239
Query: 791 VQLGGADQLGNIMSGYEFIHK 853
VQLGG+DQLGNIMSGYEFI+K
Sbjct: 240 VQLGGSDQLGNIMSGYEFINK 260
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,153,394
Number of extensions: 1166076
Number of successful extensions: 5501
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5454
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013797
(1038 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896283.2| Sus scrofa unplaced genomic scaffold ChrUScaf4167 690 0.0
Sscrofa_Chr14 84 2e-13
gb|GL896193.2| Sus scrofa unplaced genomic scaffold ChrUScaf4077 70 3e-09
>gb|GL896283.2| Sus scrofa unplaced genomic scaffold ChrUScaf4167
Length = 34374
Score = 690 bits (348), Expect = 0.0
Identities = 348/348 (100%)
Strand = Plus / Minus
Query: 111 ggcttggtaccccaggccagtcaggagtcttgccactagggctccgtaaggcccactcgg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25776 ggcttggtaccccaggccagtcaggagtcttgccactagggctccgtaaggcccactcgg 25717
Query: 171 gcgctcaggggttgctggcggtgcagaaggctcggggtctattcaaggaattcttccctg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25716 gcgctcaggggttgctggcggtgcagaaggctcggggtctattcaaggaattcttccctg 25657
Query: 231 aaaggggtacaaagacagagctcccagagctcttcgaccgtggcttggcgggcaacgttc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25656 aaaggggtacaaagacagagctcccagagctcttcgaccgtggcttggcgggcaacgttc 25597
Query: 291 ctcagaccatctattgcggtttcgaccccacagctgactcgcttcatgtggggcatctgc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25596 ctcagaccatctattgcggtttcgaccccacagctgactcgcttcatgtggggcatctgc 25537
Query: 351 tggcgcttttgggcctgtttcatttccagcgagccggccacaatgtgattgcgctggtgg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536 tggcgcttttgggcctgtttcatttccagcgagccggccacaatgtgattgcgctggtgg 25477
Query: 411 gaggtgccacggcgcgcctgggagaccccagcggccgcaccaaggagc 458
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25476 gaggtgccacggcgcgcctgggagaccccagcggccgcaccaaggagc 25429
Score = 613 bits (309), Expect = e-173
Identities = 309/309 (100%)
Strand = Plus / Minus
Query: 730 tttataccaggtgctccaagcctacgatttctactatctgttccagcattatggatgccg 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25087 tttataccaggtgctccaagcctacgatttctactatctgttccagcattatggatgccg 25028
Query: 790 ggtccagctgggtggagctgatcagctgggcaatatcatgtccggttacgagttcatcca 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25027 ggtccagctgggtggagctgatcagctgggcaatatcatgtccggttacgagttcatcca 24968
Query: 850 caagtaagcgcctctagaggagaaaaatcctagaacaagtaatgcacacacgagcataac 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24967 caagtaagcgcctctagaggagaaaaatcctagaacaagtaatgcacacacgagcataac 24908
Query: 910 ctgtaatgcattgtcaggattgtggaatgatgctcttcgttccagcccttgttgatttta 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24907 ctgtaatgcattgtcaggattgtggaatgatgctcttcgttccagcccttgttgatttta 24848
Query: 970 tcttcattaagggggataaacttagtatctctggctaatggaactaaggggctgaaataa 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24847 tcttcattaagggggataaacttagtatctctggctaatggaactaaggggctgaaataa 24788
Query: 1030 tggtattag 1038
|||||||||
Sbjct: 24787 tggtattag 24779
Score = 280 bits (141), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 506 cgccagggactacaagccctggcggctaatcaccagcagcttttcactaacgggcgaagc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25328 cgccagggactacaagccctggcggctaatcaccagcagcttttcactaacgggcgaagc 25269
Query: 566 tggggcagcttcacggtgctggataactcggcctggtaccagaagcagcacctagtggac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25268 tggggcagcttcacggtgctggataactcggcctggtaccagaagcagcacctagtggac 25209
Query: 626 ttcttggcgaccgtgggcggc 646
|||||||||||||||||||||
Sbjct: 25208 ttcttggcgaccgtgggcggc 25188
Score = 161 bits (81), Expect = 9e-37
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 1 gtacgacgctggcgctgaaggctgagttggggctctaaggtcccagcatccccttcgcgc 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 25961 gtacgacgctggcgctgaaagctgagttggggctctaaggtcccagcatccccttcgcgc 25902
Query: 61 ctccgccaagatggcagcgcccatg 85
|||||||||||||||||||||||||
Sbjct: 25901 ctccgccaagatggcagcgcccatg 25877
>Sscrofa_Chr14
|| Length = 153851969
Score = 83.8 bits (42), Expect = 2e-13
Identities = 116/140 (82%), Gaps = 3/140 (2%)
Strand = Plus / Minus
Query: 713 atgagtttggccgagtttttataccagg---tgctccaagcctacgatttctactatctg 769
|||||||||||| ||||||||||||| ||||||||||||| ||| ||| || ||
Sbjct: 116211322 atgagtttggccaagtttttataccatcatatgctccaagcctatgatgtctgttacctt 116211263
Query: 770 ttccagcattatggatgccgggtccagctgggtggagctgatcagctgggcaatatcatg 829
|||||| ||||||||||| || ||| ||||||||| || |||| ||||| |||||||||
Sbjct: 116211262 ttccagggttatggatgccaggcccaactgggtggatctaatcacctgggtaatatcatg 116211203
Query: 830 tccggttacgagttcatcca 849
|| || | ||||||||||||
Sbjct: 116211202 tctggatccgagttcatcca 116211183
Score = 77.8 bits (39), Expect = 1e-11
Identities = 119/145 (82%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 713 atgagtttggccgagtttttataccagg---tgctccaagcctacgatttctactatctg 769
|||||||||||| ||||||||||||| ||||||||||||| ||| ||| || ||
Sbjct: 116119374 atgagtttggccaagtttttataccatcatatgctccaagcctatgatgtctgttacctt 116119315
Query: 770 ttccagcattatggatgccgggtccagctgggtggagctgatcagctgggcaatatcatg 829
|||||| ||| ||||||| || ||| ||||||||| || |||| ||||| |||||||||
Sbjct: 116119314 ttccagggttacggatgccaggcccaactgggtggatctaatcacctgggtaatatcatg 116119255
Query: 830 tccggttacgagttcatccacaagt 854
|| || | ||||||||||||||||
Sbjct: 116119254 tctggatctgagttcatccacaagt 116119230
Score = 75.8 bits (38), Expect = 4e-11
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 713 atgagtttggccgagtttttataccaggtgctcc-aagcctacgatttctactatctgtt 771
|||||||||||| ||||||||||||||||||||| || |||| ||||||| || ||| |
Sbjct: 115865753 atgagtttggccaagtttttataccaggtgctccaaaacctatgatttctgttacctgct 115865694
Query: 772 ccagcattatggatgccgggtccagctgggtggagctgatca 813
|||| ||||||||||| | ||| ||||||||| |||||||
Sbjct: 115865693 ccagggttatggatgccagacccaactgggtggatctgatca 115865652
Score = 60.0 bits (30), Expect = 3e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 565 ctggggcagcttcacggtgctggataactcggcctggtaccagaagcagcacctagtgga 624
|||||||| ||||| ||||||||| | ||||| |||||||||||||||||| |||||
Sbjct: 115865896 ctggggcaacttcagggtgctggacgttttggcctagtaccagaagcagcacctggtgga 115865837
Query: 625 cttcttggcg 634
|||| |||||
Sbjct: 115865836 cttcctggcg 115865827
>gb|GL896193.2| Sus scrofa unplaced genomic scaffold ChrUScaf4077
Length = 16514
Score = 69.9 bits (35), Expect = 3e-09
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 713 atgagtttggccgagtttttataccaggtgctccaagcctacgatttctactatctgttc 772
|||||||||||| ||||||||||||||| |||||| ||| || |||| ||| ||||||
Sbjct: 9129 atgagtttggccaagtttttataccaggcactccaaatctatgacttctgctacctgttc 9070
Query: 773 cagcattatggatgccgggtcca 795
||| ||||||||||| ||||||
Sbjct: 9069 cagagttatggatgccaggtcca 9047
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,911,683
Number of extensions: 112
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 9
Length of query: 1038
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1017
Effective length of database: 2,808,413,156
Effective search space: 2856156179652
Effective search space used: 2856156179652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)