Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013799
(993 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192590.1| ankyrin repeat and SOCS box protein 6 [Bos t... 470 e-141
Alignment gi|XP_002691687.1| PREDICTED: ankyrin repeat and SOCS box-conta... 470 e-141
Alignment gi|NP_001192889.1| serine/threonine-protein phosphatase 6 regul... 71 2e-12
Alignment gi|XP_002685223.1| PREDICTED: UNCoordinated family member (unc-... 71 2e-12
Alignment gi|NP_001029550.1| ankyrin repeat domain-containing protein 1 [... 70 4e-12
Alignment gi|NP_001094658.1| ankyrin repeat and SOCS box protein 16 [Bos ... 67 2e-11
Alignment gi|NP_001179459.1| serine/threonine-protein phosphatase 6 regul... 65 1e-10
Alignment gi|XP_002687626.1| PREDICTED: ankyrin repeat domain 52 [Bos tau... 65 1e-10
Alignment gi|XP_002696536.1| PREDICTED: ankyrin repeat domain 26-like [Bo... 62 6e-10
Alignment gi|XP_584582.4| PREDICTED: ankyrin repeat domain 26-like [Bos t... 62 6e-10
>ref|NP_001192590.1| ankyrin repeat and SOCS box protein 6 [Bos taurus].
Length = 421
Score = 470 bits (1210), Expect(2) = e-141
Identities = 236/241 (97%), Positives = 238/241 (98%)
Frame = +3
Query: 147 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA 326
MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSY SEESRILVLTELLERKA
Sbjct: 1 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYATSEESRILVLTELLERKA 60
Query: 327 HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 506
HSPFYQEGVSNALLKMAELGLTRAA VLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE
Sbjct: 61 HSPFYQEGVSNALLKMAELGLTRAAAVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 120
Query: 507 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 686
LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA
Sbjct: 121 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 180
Query: 687 SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF 866
SSDGVQ+HNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF
Sbjct: 181 SSDGVQVHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF 240
Query: 867 K 869
+
Sbjct: 241 Q 241
Score = 50.4 bits (119), Expect(2) = e-141
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 887 AHGADPSECPAHESLTHICPQSF 955
AHGADPSECPAHESLTHIC +SF
Sbjct: 248 AHGADPSECPAHESLTHICLKSF 270
>ref|XP_002691687.1| PREDICTED: ankyrin repeat and SOCS box-containing 6 [Bos taurus].
Length = 421
Score = 470 bits (1210), Expect(2) = e-141
Identities = 236/241 (97%), Positives = 238/241 (98%)
Frame = +3
Query: 147 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA 326
MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSY SEESRILVLTELLERKA
Sbjct: 1 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYATSEESRILVLTELLERKA 60
Query: 327 HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 506
HSPFYQEGVSNALLKMAELGLTRAA VLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE
Sbjct: 61 HSPFYQEGVSNALLKMAELGLTRAAAVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 120
Query: 507 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 686
LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA
Sbjct: 121 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 180
Query: 687 SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF 866
SSDGVQ+HNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF
Sbjct: 181 SSDGVQVHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF 240
Query: 867 K 869
+
Sbjct: 241 Q 241
Score = 50.4 bits (119), Expect(2) = e-141
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 887 AHGADPSECPAHESLTHICPQSF 955
AHGADPSECPAHESLTHIC +SF
Sbjct: 248 AHGADPSECPAHESLTHICLKSF 270
>ref|NP_001192889.1| serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A [Bos taurus].
Length = 1053
Score = 70.9 bits (172), Expect = 2e-12
Identities = 50/154 (32%), Positives = 82/154 (53%)
Frame = +3
Query: 309 LLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRN 488
L+ +K F L A LG ++L+ +GA +N +D + T LH AV
Sbjct: 27 LIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDS-KWLTPLHRAVASC 85
Query: 489 QPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTA 668
+ V++L++H AD+N RD+ + +PL A+ + + C + L+ L ++VN +D+ G+TA
Sbjct: 86 SEEAVQVLLKHSADVNARDK-NWQTPLHTAAAN-KAVKCAEALVPLLSNVNVSDRAGRTA 143
Query: 669 LLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
L HA S G E ++LLL GA++ A K
Sbjct: 144 LHHAALSGHG------EMVKLLLSRGANINAFDK 171
Score = 53.1 bits (126), Expect = 4e-07
Identities = 47/155 (30%), Positives = 73/155 (47%)
Frame = +3
Query: 360 ALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINR 539
AL A G +LL GAN+N D A+H A ++V+LLV HGA++
Sbjct: 143 ALHHAALSGHGEMVKLLLSRGANINAFDKKDR-RAIHWAAYMGHIEVVKLLVAHGAEVTC 201
Query: 540 RDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTE 719
+D+ +PL A+ + ++ LLDLG D+N + +G T L A + V ++
Sbjct: 202 KDK-KSYTPLHAAASS-GMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNE-- 257
Query: 720 NIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVG 824
L++ GA+V + G FT + F T G
Sbjct: 258 ----LIDSGANVNQKNEKG---FTPLHFAAASTHG 285
Score = 51.2 bits (121), Expect = 1e-06
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Frame = +3
Query: 375 AELGLTRAADVLLRNGANLNFEDPVTY-YTALHIAVLRNQPDMVELLVRHGADINRRDRI 551
A G+ LL G ++N +P Y T LH+A Q +V L+ GA++N+++
Sbjct: 214 ASSGMISVVKYLLDLGVDMN--EPNAYGNTPLHVACYNGQDVVVNELIDSGANVNQKNE- 270
Query: 552 HESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIR 728
+PL A+ CL+ L+ GADVN K GKT LH A +H +
Sbjct: 271 KGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTP-LHMTA------LHGRFSRSQ 323
Query: 729 LLLEGGADVKATTKDGDT 782
+++ GA + K+G+T
Sbjct: 324 TIIQSGAVIDCEDKNGNT 341
Score = 50.8 bits (120), Expect = 2e-06
Identities = 42/126 (33%), Positives = 61/126 (48%)
Frame = +3
Query: 399 ADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA 578
+ ++++GA ++ ED T LHIA ++ L+ GAD +R IH PL LA
Sbjct: 322 SQTIIQSGAVIDCEDK-NGNTPLHIAARYGHELLINTLITSGADTAKRG-IHGMFPLHLA 379
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVK 758
+ C ++LL G D++ D G+T LHA A+ N E + LLL GAD
Sbjct: 380 ALSGFS-DCCRKLLSSGFDIDTPDDFGRTC-LHAAAAGG-----NLECLNLLLNTGADFN 432
Query: 759 ATTKDG 776
K G
Sbjct: 433 KKDKFG 438
>ref|XP_002685223.1| PREDICTED: UNCoordinated family member (unc-44)-like [Bos taurus].
Length = 1053
Score = 70.9 bits (172), Expect = 2e-12
Identities = 50/154 (32%), Positives = 82/154 (53%)
Frame = +3
Query: 309 LLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRN 488
L+ +K F L A LG ++L+ +GA +N +D + T LH AV
Sbjct: 27 LIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDS-KWLTPLHRAVASC 85
Query: 489 QPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTA 668
+ V++L++H AD+N RD+ + +PL A+ + + C + L+ L ++VN +D+ G+TA
Sbjct: 86 SEEAVQVLLKHSADVNARDK-NWQTPLHTAAAN-KAVKCAEALVPLLSNVNVSDRAGRTA 143
Query: 669 LLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
L HA S G E ++LLL GA++ A K
Sbjct: 144 LHHAALSGHG------EMVKLLLSRGANINAFDK 171
Score = 53.1 bits (126), Expect = 4e-07
Identities = 47/155 (30%), Positives = 73/155 (47%)
Frame = +3
Query: 360 ALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINR 539
AL A G +LL GAN+N D A+H A ++V+LLV HGA++
Sbjct: 143 ALHHAALSGHGEMVKLLLSRGANINAFDKKDR-RAIHWAAYMGHIEVVKLLVAHGAEVTC 201
Query: 540 RDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTE 719
+D+ +PL A+ + ++ LLDLG D+N + +G T L A + V ++
Sbjct: 202 KDK-KSYTPLHAAASS-GMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNE-- 257
Query: 720 NIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVG 824
L++ GA+V + G FT + F T G
Sbjct: 258 ----LIDSGANVNQKNEKG---FTPLHFAAASTHG 285
Score = 51.2 bits (121), Expect = 1e-06
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Frame = +3
Query: 375 AELGLTRAADVLLRNGANLNFEDPVTY-YTALHIAVLRNQPDMVELLVRHGADINRRDRI 551
A G+ LL G ++N +P Y T LH+A Q +V L+ GA++N+++
Sbjct: 214 ASSGMISVVKYLLDLGVDMN--EPNAYGNTPLHVACYNGQDVVVNELIDSGANVNQKNE- 270
Query: 552 HESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIR 728
+PL A+ CL+ L+ GADVN K GKT LH A +H +
Sbjct: 271 KGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTP-LHMTA------LHGRFSRSQ 323
Query: 729 LLLEGGADVKATTKDGDT 782
+++ GA + K+G+T
Sbjct: 324 TIIQSGAVIDCEDKNGNT 341
Score = 50.8 bits (120), Expect = 2e-06
Identities = 42/126 (33%), Positives = 61/126 (48%)
Frame = +3
Query: 399 ADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA 578
+ ++++GA ++ ED T LHIA ++ L+ GAD +R IH PL LA
Sbjct: 322 SQTIIQSGAVIDCEDK-NGNTPLHIAARYGHELLINTLITSGADTAKRG-IHGMFPLHLA 379
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVK 758
+ C ++LL G D++ D G+T LHA A+ N E + LLL GAD
Sbjct: 380 ALSGFS-DCCRKLLSSGFDIDTPDDFGRTC-LHAAAAGG-----NLECLNLLLNTGADFN 432
Query: 759 ATTKDG 776
K G
Sbjct: 433 KKDKFG 438
>ref|NP_001029550.1| ankyrin repeat domain-containing protein 1 [Bos taurus].
Length = 319
Score = 69.7 bits (169), Expect = 4e-12
Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Frame = +3
Query: 225 IQDPERQ---EPLDGPSYV-ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLT 392
+++PE + EP+D P ++ A+ E+++ V+ + L K + E AL + G
Sbjct: 107 VKEPEPEIVTEPVDVPMFLKAALENKLPVIEKFLSDKNNPDVCDEYKRTALHRACLEGHL 166
Query: 393 RAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLD 572
+ L+ GA + F D + TA+H A D+++LL+ GA I+ RD++ S+PL
Sbjct: 167 AIVEKLIEAGAQIEFRDMLES-TAIHWASRGGSLDVLKLLLNKGAKISARDKL-LSTPLH 224
Query: 573 LASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGAD 752
+A C + L+ AD+NA D+ G T L D V+++ + IRLL+ GAD
Sbjct: 225 VA-VRTGHYECAEHLIACEADLNAKDREGDTPL------HDAVRLNRYKMIRLLITYGAD 277
Query: 753 VKATTKDGDTVFTCII 800
+ G T ++
Sbjct: 278 LNVKNCAGKTPMDLVL 293
>ref|NP_001094658.1| ankyrin repeat and SOCS box protein 16 [Bos taurus].
Length = 453
Score = 67.4 bits (163), Expect = 2e-11
Identities = 53/137 (38%), Positives = 72/137 (52%)
Frame = +3
Query: 372 MAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRI 551
+A G T A L+R GA L+ V ALH A R Q D V+LLV GA +N
Sbjct: 118 VAARGYTNCARYLIRQGAELDAR--VGGRAALHEACARAQFDCVQLLVTFGAKVNVLSE- 174
Query: 552 HESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRL 731
++PL L + PE L C + LL+ GA VN A + + LH +A++ G++ H + L
Sbjct: 175 EGTTPLHLCTV-PESLQCAKLLLEAGATVNLAARDSEVTPLH-VAAARGLEGH----VAL 228
Query: 732 LLEGGADVKATTKDGDT 782
LE GADV T G+T
Sbjct: 229 YLEHGADVNLRTSQGET 245
Score = 49.7 bits (117), Expect = 4e-06
Identities = 44/143 (30%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Frame = +3
Query: 393 RAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLD 572
+ A +LL GA +N + T LH+A R V L + HGAD+N R E++ L+
Sbjct: 190 QCAKLLLEAGATVNLAARDSEVTPLHVAAARGLEGHVALYLEHGADVNLRTSQGETA-LN 248
Query: 573 LA-------SEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRL 731
A S +RLL+ GAD AA + T L +A A+ G L
Sbjct: 249 AACAGAEGPSSSRRHQAAARRLLEAGADARAAGRKRHTPLHNACANGCG------GLAEL 302
Query: 732 LLEGGADVKATTKDGDTVFTCII 800
LL GA G T C +
Sbjct: 303 LLRHGACAAVPNGAGQTPMDCAL 325
>ref|NP_001179459.1| serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit C [Bos taurus].
Length = 1076
Score = 64.7 bits (156), Expect = 1e-10
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Frame = +3
Query: 255 DGPSYVASEESR-ILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANL 431
D P V + SR + + LL +K + + L A +G +LL +GAN+
Sbjct: 8 DQPPLVQAIFSRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANV 67
Query: 432 NFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQ 611
N +D + + T LH A ++ LL+ H AD+N RD++ + +PL +A+ C +
Sbjct: 68 NAKDTL-WLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQ-TPLHVAAAN-RATKCAE 124
Query: 612 RLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
L L + +N AD+ G++AL HA+ S + E + LLL GA + K
Sbjct: 125 ALAPLLSSLNVADRSGRSALHHAVHSG------HLETVNLLLNKGASLNVCDK 171
Score = 57.4 bits (137), Expect = 2e-08
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 18/192 (9%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAEL-GLTRAADVLLRNGANLNF 437
P +VA+ + + ELL YQ + L MA + G + +L++NG+ ++
Sbjct: 275 PLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDC 334
Query: 438 EDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA-----SEEPERLP 602
D T LH+A ++ L+ +GAD RR IH+ PL LA S+ +L
Sbjct: 335 ADKFGN-TPLHVAARYGHELLISTLMTNGADTARRG-IHDMFPLHLAVLFGFSDCCRKLL 392
Query: 603 CL------------QRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGG 746
+ +L G D+N D G+T LHA AS N E + LLL G
Sbjct: 393 SSGQLYSIVSSLSNEHVLSAGFDINTPDNLGRTC-LHAAASGG-----NVECLNLLLSSG 446
Query: 747 ADVKATTKDGDT 782
AD++ K G T
Sbjct: 447 ADLRRRDKFGRT 458
Score = 54.3 bits (129), Expect = 2e-07
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
Frame = +3
Query: 216 SLGIQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTR 395
SL + D + ++PL +++ E VL L+ R A L A G
Sbjct: 165 SLNVCDKKERQPLHWAAFLGHLE----VLKLLVARGADLGCKDRKGYGLLHTAAASGQIE 220
Query: 396 AADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDL 575
LLR GA ++ E TALHIA Q + LV GA++N+ + +PL +
Sbjct: 221 VVKYLLRMGAEID-EPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPND-KGFTPLHV 278
Query: 576 ASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIRLLLEGGAD 752
A+ CL+ L++ GADVN K GK+ LH A IH ++L++ G++
Sbjct: 279 AAVSTNGALCLELLVNNGADVNYQSKEGKSP-LHMAA------IHGRFTRSQILIQNGSE 331
Query: 753 VKATTKDGDT 782
+ K G+T
Sbjct: 332 IDCADKFGNT 341
Score = 50.4 bits (119), Expect = 2e-06
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Frame = +3
Query: 225 IQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAAD 404
++D E P+ P ++A+ L L E + AL E G T +
Sbjct: 577 LEDVESTIPVS-PLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVE 635
Query: 405 VLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHG--ADINRRDRIHESSPLDLA 578
VL +GA+ ++ +T LH A D + LL+ G ADI + +PL LA
Sbjct: 636 VLTTHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLA 695
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTAL 671
+ C+ LL+ G+ +AAD G+TAL
Sbjct: 696 IMNGH-VDCVHLLLEKGSTADAADLRGRTAL 725
>ref|XP_002687626.1| PREDICTED: ankyrin repeat domain 52 [Bos taurus].
Length = 1076
Score = 64.7 bits (156), Expect = 1e-10
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Frame = +3
Query: 255 DGPSYVASEESR-ILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANL 431
D P V + SR + + LL +K + + L A +G +LL +GAN+
Sbjct: 8 DQPPLVQAIFSRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANV 67
Query: 432 NFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQ 611
N +D + + T LH A ++ LL+ H AD+N RD++ + +PL +A+ C +
Sbjct: 68 NAKDTL-WLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQ-TPLHVAAAN-RATKCAE 124
Query: 612 RLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
L L + +N AD+ G++AL HA+ S + E + LLL GA + K
Sbjct: 125 ALAPLLSSLNVADRSGRSALHHAVHSG------HLETVNLLLNKGASLNVCDK 171
Score = 57.4 bits (137), Expect = 2e-08
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 18/192 (9%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAEL-GLTRAADVLLRNGANLNF 437
P +VA+ + + ELL YQ + L MA + G + +L++NG+ ++
Sbjct: 275 PLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDC 334
Query: 438 EDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA-----SEEPERLP 602
D T LH+A ++ L+ +GAD RR IH+ PL LA S+ +L
Sbjct: 335 ADKFGN-TPLHVAARYGHELLISTLMTNGADTARRG-IHDMFPLHLAVLFGFSDCCRKLL 392
Query: 603 CL------------QRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGG 746
+ +L G D+N D G+T LHA AS N E + LLL G
Sbjct: 393 SSGQLYSIVSSLSNEHVLSAGFDINTPDNLGRTC-LHAAASGG-----NVECLNLLLSSG 446
Query: 747 ADVKATTKDGDT 782
AD++ K G T
Sbjct: 447 ADLRRRDKFGRT 458
Score = 54.3 bits (129), Expect = 2e-07
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
Frame = +3
Query: 216 SLGIQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTR 395
SL + D + ++PL +++ E VL L+ R A L A G
Sbjct: 165 SLNVCDKKERQPLHWAAFLGHLE----VLKLLVARGADLGCKDRKGYGLLHTAAASGQIE 220
Query: 396 AADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDL 575
LLR GA ++ E TALHIA Q + LV GA++N+ + +PL +
Sbjct: 221 VVKYLLRMGAEID-EPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPND-KGFTPLHV 278
Query: 576 ASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIRLLLEGGAD 752
A+ CL+ L++ GADVN K GK+ LH A IH ++L++ G++
Sbjct: 279 AAVSTNGALCLELLVNNGADVNYQSKEGKSP-LHMAA------IHGRFTRSQILIQNGSE 331
Query: 753 VKATTKDGDT 782
+ K G+T
Sbjct: 332 IDCADKFGNT 341
Score = 50.4 bits (119), Expect = 2e-06
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Frame = +3
Query: 225 IQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAAD 404
++D E P+ P ++A+ L L E + AL E G T +
Sbjct: 577 LEDVESTIPVS-PLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVE 635
Query: 405 VLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHG--ADINRRDRIHESSPLDLA 578
VL +GA+ ++ +T LH A D + LL+ G ADI + +PL LA
Sbjct: 636 VLTTHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLA 695
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTAL 671
+ C+ LL+ G+ +AAD G+TAL
Sbjct: 696 IMNGH-VDCVHLLLEKGSTADAADLRGRTAL 725
>ref|XP_002696536.1| PREDICTED: ankyrin repeat domain 26-like [Bos taurus].
Length = 364
Score = 62.4 bits (150), Expect = 6e-10
Identities = 55/183 (30%), Positives = 92/183 (50%)
Frame = +3
Query: 207 ILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELG 386
+ G G+ D + ++ L ++A +++T LLERK + AL+K+ E
Sbjct: 63 LFGKNGLNDGKDEQNLTA-LHLACANGHSVMVTLLLERKCLLNLCDDENRTALMKVWECQ 121
Query: 387 LTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSP 566
A +LL +GAN N D V TALH AV + L+ A+I ++ +
Sbjct: 122 EEECATLLLEHGANPNVMD-VCENTALHYAVFCQNISLTAKLLSCDANIEAMNKDDLTPL 180
Query: 567 LDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGG 746
L + E E++ ++ L++ A++NA DK +TAL+ A V+ +T +RLLL+ G
Sbjct: 181 LLVICERREQM--VEFLVNKKANINAVDKMKRTALMLA------VKYESTNVVRLLLQQG 232
Query: 747 ADV 755
AD+
Sbjct: 233 ADI 235
>ref|XP_584582.4| PREDICTED: ankyrin repeat domain 26-like [Bos taurus].
Length = 364
Score = 62.4 bits (150), Expect = 6e-10
Identities = 55/183 (30%), Positives = 92/183 (50%)
Frame = +3
Query: 207 ILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELG 386
+ G G+ D + ++ L ++A +++T LLERK + AL+K+ E
Sbjct: 63 LFGKNGLNDGKDEQNLTA-LHLACANGHSVMVTLLLERKCLLNLCDDENRTALMKVWECQ 121
Query: 387 LTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSP 566
A +LL +GAN N D V TALH AV + L+ A+I ++ +
Sbjct: 122 EEECATLLLEHGANPNVMD-VCENTALHYAVFCQNISLTAKLLSCDANIEAMNKDDLTPL 180
Query: 567 LDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGG 746
L + E E++ ++ L++ A++NA DK +TAL+ A V+ +T +RLLL+ G
Sbjct: 181 LLVICERREQM--VEFLVNKKANINAVDKMKRTALMLA------VKYESTNVVRLLLQQG 232
Query: 747 ADV 755
AD+
Sbjct: 233 ADI 235
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,991,837
Number of extensions: 825254
Number of successful extensions: 5363
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 4994
Number of HSP's successfully gapped: 107
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013799
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013799
(993 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548420.1| PREDICTED: similar to Ankyrin repeat and SOCS b... 472 e-141
Alignment gi|XP_860766.1| PREDICTED: similar to Ankyrin repeat and SOCS b... 456 e-137
Alignment gi|XP_534254.2| PREDICTED: similar to ankyrin repeat domain 28 ... 72 1e-12
Alignment gi|XP_536014.2| PREDICTED: similar to ankyrin repeat domain 28 ... 67 2e-11
Alignment gi|XP_534960.1| PREDICTED: similar to cardiac ankyrin repeat pr... 66 4e-11
Alignment gi|XP_532865.2| PREDICTED: similar to kinase D-interacting subs... 65 8e-11
Alignment gi|XP_538230.2| PREDICTED: similar to Ankyrin repeat domain pro... 65 1e-10
Alignment gi|XP_850948.1| PREDICTED: similar to ankyrin repeat domain 2 [... 64 2e-10
Alignment gi|XP_855977.1| PREDICTED: similar to kinase D-interacting subs... 63 4e-10
Alignment gi|XP_855938.1| PREDICTED: similar to kinase D-interacting subs... 63 4e-10
>ref|XP_548420.1| PREDICTED: similar to Ankyrin repeat and SOCS box protein 6 (ASB-6)
isoform 1 [Canis familiaris].
Length = 421
Score = 472 bits (1214), Expect(2) = e-141
Identities = 237/241 (98%), Positives = 241/241 (100%)
Frame = +3
Query: 147 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA 326
MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA
Sbjct: 1 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA 60
Query: 327 HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 506
HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE
Sbjct: 61 HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 120
Query: 507 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 686
LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA
Sbjct: 121 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 180
Query: 687 SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF 866
SSDGVQI+NTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQ+I+RFCF
Sbjct: 181 SSDGVQIYNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQMISRFCF 240
Query: 867 K 869
+
Sbjct: 241 Q 241
Score = 50.4 bits (119), Expect(2) = e-141
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 887 AHGADPSECPAHESLTHICPQSF 955
AHGADPSECPAHESLTHIC +SF
Sbjct: 248 AHGADPSECPAHESLTHICLKSF 270
>ref|XP_860766.1| PREDICTED: similar to Ankyrin repeat and SOCS box protein 6 (ASB-6)
isoform 2 [Canis familiaris].
Length = 422
Score = 456 bits (1173), Expect(2) = e-137
Identities = 232/242 (95%), Positives = 236/242 (97%), Gaps = 1/242 (0%)
Frame = +3
Query: 147 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGP-SYVASEESRILVLTELLERK 323
MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDG V EESRILVLTELLERK
Sbjct: 1 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGQVGLVLGEESRILVLTELLERK 60
Query: 324 AHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMV 503
AHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMV
Sbjct: 61 AHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMV 120
Query: 504 ELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHAL 683
ELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHAL
Sbjct: 121 ELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHAL 180
Query: 684 ASSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFC 863
ASSDGVQI+NTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQ+I+RFC
Sbjct: 181 ASSDGVQIYNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQMISRFC 240
Query: 864 FK 869
F+
Sbjct: 241 FQ 242
Score = 50.4 bits (119), Expect(2) = e-137
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 887 AHGADPSECPAHESLTHICPQSF 955
AHGADPSECPAHESLTHIC +SF
Sbjct: 249 AHGADPSECPAHESLTHICLKSF 271
>ref|XP_534254.2| PREDICTED: similar to ankyrin repeat domain 28 [Canis familiaris].
Length = 1053
Score = 71.6 bits (174), Expect = 1e-12
Identities = 50/154 (32%), Positives = 83/154 (53%)
Frame = +3
Query: 309 LLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRN 488
L+ +K F L A LG ++L+ +GA +N +D + T LH AV
Sbjct: 27 LIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDS-KWLTPLHRAVASC 85
Query: 489 QPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTA 668
+ V++L++H AD+N RD+ + +PL +A+ + + C + L+ L ++VN +D+ G+TA
Sbjct: 86 SEEAVQVLLKHSADVNARDK-NWQTPLHIAAAN-KAVKCAEALVPLLSNVNVSDRAGRTA 143
Query: 669 LLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
L HA S G E ++LLL GA++ A K
Sbjct: 144 LHHAAFSGHG------EMVKLLLSRGANINAFDK 171
Score = 52.4 bits (124), Expect = 7e-07
Identities = 50/188 (26%), Positives = 83/188 (44%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFE 440
P ++A+ + L+ ++ AL A G +LL GAN+N
Sbjct: 110 PLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAF 169
Query: 441 DPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLL 620
D A+H A ++V+LLV HGA++ +D+ +PL A+ + ++ LL
Sbjct: 170 DKKDR-RAIHWAAYMGHIEVVKLLVAHGAEVTCKDK-KSYTPLHAAASS-GMISVVKYLL 226
Query: 621 DLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCII 800
DLG D+N + +G T L A + V ++ L++ GA+V + G FT +
Sbjct: 227 DLGVDMNEPNAYGNTPLHVACYNGQDVVVNE------LIDCGANVNQKNEKG---FTPLH 277
Query: 801 FLLGETVG 824
F T G
Sbjct: 278 FAAASTHG 285
Score = 50.8 bits (120), Expect = 2e-06
Identities = 42/126 (33%), Positives = 61/126 (48%)
Frame = +3
Query: 399 ADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA 578
+ ++++GA ++ ED T LHIA ++ L+ GAD +R IH PL LA
Sbjct: 322 SQTIIQSGAVIDCEDK-NGNTPLHIAARYGHELLINTLITSGADTAKRG-IHGMFPLHLA 379
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVK 758
+ C ++LL G D++ D G+T LHA A+ N E + LLL GAD
Sbjct: 380 ALSGFS-DCCRKLLSSGFDIDTPDDFGRTC-LHAAAAGG-----NLECLNLLLNTGADFN 432
Query: 759 ATTKDG 776
K G
Sbjct: 433 KKDKFG 438
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Frame = +3
Query: 375 AELGLTRAADVLLRNGANLNFEDPVTY-YTALHIAVLRNQPDMVELLVRHGADINRRDRI 551
A G+ LL G ++N +P Y T LH+A Q +V L+ GA++N+++
Sbjct: 214 ASSGMISVVKYLLDLGVDMN--EPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNE- 270
Query: 552 HESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIR 728
+PL A+ CL+ L+ GADVN K GKT LH A +H +
Sbjct: 271 KGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTP-LHMTA------LHGRFSRSQ 323
Query: 729 LLLEGGADVKATTKDGDT 782
+++ GA + K+G+T
Sbjct: 324 TIIQSGAVIDCEDKNGNT 341
>ref|XP_536014.2| PREDICTED: similar to ankyrin repeat domain 28 [Canis familiaris].
Length = 1243
Score = 67.4 bits (163), Expect = 2e-11
Identities = 43/132 (32%), Positives = 76/132 (57%)
Frame = +3
Query: 375 AELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIH 554
A LG ++L+ +GA +N +D + + T LH AV + V++L++H AD+N RD+ +
Sbjct: 218 AFLGDAEIIELLILSGARVNAKDNM-WLTPLHRAVASRSEEAVQVLIKHSADVNARDK-N 275
Query: 555 ESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLL 734
+PL +A+ + + C + ++ L + VN +D+ G+TAL HA + + E + LL
Sbjct: 276 WQTPLHVAAAN-KAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNG------HVEMVNLL 328
Query: 735 LEGGADVKATTK 770
L GA++ A K
Sbjct: 329 LAKGANINAFDK 340
Score = 52.8 bits (125), Expect = 5e-07
Identities = 56/203 (27%), Positives = 82/203 (40%), Gaps = 31/203 (15%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFE 440
P +VA+ + ++ + G AL A G ++LL GAN+N
Sbjct: 279 PLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHVEMVNLLLAKGANINAF 338
Query: 441 DPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDR-----IHESSP----------LDL 575
D ALH A D+V LL+ HGA++ +D+ +H ++ L+L
Sbjct: 339 DKKDR-RALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQINVVKHLLNL 397
Query: 576 ASEEPE---------RLPC-------LQRLLDLGADVNAADKHGKTALLHALASSDGVQI 707
E E L C + L D GA+VN + G T L A AS+
Sbjct: 398 GVEIDEINIYGNTALHLACYNGQDAVVNELTDYGANVNQPNNSGFTPLHFAAAST----- 452
Query: 708 HNTENIRLLLEGGADVKATTKDG 776
H + LL+ GADV +KDG
Sbjct: 453 HGALCLELLVNNGADVNIQSKDG 475
Score = 51.6 bits (122), Expect = 1e-06
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Frame = +3
Query: 426 NLNFE-DPVTYY--TALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPER 596
NL E D + Y TALH+A Q +V L +GA++N+ + +PL A+
Sbjct: 396 NLGVEIDEINIYGNTALHLACYNGQDAVVNELTDYGANVNQPNN-SGFTPLHFAAASTHG 454
Query: 597 LPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIRLLLEGGADVKATTKD 773
CL+ L++ GADVN K GK+ LH A +H + L++ G ++ KD
Sbjct: 455 ALCLELLVNNGADVNIQSKDGKSP-LHMTA------VHGRFTRSQTLIQNGGEIDCVDKD 507
Query: 774 GDT 782
G+T
Sbjct: 508 GNT 510
>ref|XP_534960.1| PREDICTED: similar to cardiac ankyrin repeat protein isoform 1
[Canis familiaris].
Length = 319
Score = 66.2 bits (160), Expect = 4e-11
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 4/196 (2%)
Frame = +3
Query: 225 IQDPERQ---EPLDGPSYV-ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLT 392
+++PE + EP+D P ++ A+ E+++ V+ + L K + E AL + G
Sbjct: 107 VKEPEPEIITEPVDVPRFLKAALENKLPVVEKFLSDKNNPDVCDEYKRTALHRACLEGHL 166
Query: 393 RAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLD 572
+ L+ GA + F D + TALH A D+++LL+ GA I+ RD++ S+ L
Sbjct: 167 AIVEKLMEAGAQIEFRDMLES-TALHWASRGGNLDVLKLLLNKGAKISARDKL-LSTALH 224
Query: 573 LASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGAD 752
+A C + L+ AD+NA D+ G T L D V+++ + IRLL+ GAD
Sbjct: 225 VA-VRTGHYECAEHLIACEADLNAKDREGDTPL------HDSVRLNRYKMIRLLIMYGAD 277
Query: 753 VKATTKDGDTVFTCII 800
+ G T ++
Sbjct: 278 LNIKNCAGKTPMDLVL 293
>ref|XP_532865.2| PREDICTED: similar to kinase D-interacting substance of 220 kDa
isoform 1 [Canis familiaris].
Length = 1764
Score = 65.5 bits (158), Expect = 8e-11
Identities = 50/170 (29%), Positives = 89/170 (52%)
Frame = +3
Query: 273 ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVT 452
AS+E + ++ ELL+ + G AL+ G T ++LL +GAN + +
Sbjct: 78 ASKEGHVHIVEELLKCGVNLEHRDMGGWTALMWACYKGRTEVVELLLSHGANPSVTGLYS 137
Query: 453 YYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGA 632
Y + A R D+V LL+++GA +N D+ + ++PL A+ + L C++ LL +GA
Sbjct: 138 VYPIIW-AAGRGHADIVHLLLQNGAKVNCSDK-YGTTPLVWAARK-GHLECVKHLLAMGA 194
Query: 633 DVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDT 782
DV+ + TAL+ A+ T++++ +L+ +V T KDG+T
Sbjct: 195 DVDQEGANSMTALIVAVKGG------YTQSVKEILKRNPNVNLTDKDGNT 238
>ref|XP_538230.2| PREDICTED: similar to Ankyrin repeat domain protein 28 [Canis
familiaris].
Length = 1076
Score = 64.7 bits (156), Expect = 1e-10
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 1/167 (0%)
Frame = +3
Query: 273 ASEESR-ILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPV 449
AS E R + + LL +K + + L A +G +LL +GAN+N +D +
Sbjct: 14 ASREIRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANVNAKDTL 73
Query: 450 TYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLG 629
+ T LH A ++ LL+ H AD+N RD++ + +PL +A+ C + L L
Sbjct: 74 -WLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQ-TPLHVAAAN-RATKCAEALAPLL 130
Query: 630 ADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
+ +N AD+ G++AL HA+ S + E + LLL GA + K
Sbjct: 131 SSLNVADRSGRSALHHAVHSG------HLETVNLLLNKGASLNVCDK 171
Score = 57.4 bits (137), Expect = 2e-08
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 18/192 (9%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAEL-GLTRAADVLLRNGANLNF 437
P +VA+ + + ELL YQ + L MA + G + +L++NG+ ++
Sbjct: 275 PLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDC 334
Query: 438 EDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA-----SEEPERLP 602
D T LH+A ++ L+ +GAD RR IH+ PL LA S+ +L
Sbjct: 335 ADKFGN-TPLHVAARYGHELLISTLMTNGADTARRG-IHDMFPLHLAVLFGFSDCCRKLL 392
Query: 603 CL------------QRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGG 746
+ +L G D+N D G+T LHA AS N E + LLL G
Sbjct: 393 SSGQLYSIVSSLSNEHVLSAGFDINTPDNLGRTC-LHAAASGG-----NVECLNLLLSSG 446
Query: 747 ADVKATTKDGDT 782
AD++ K G T
Sbjct: 447 ADLRRRDKFGRT 458
Score = 54.3 bits (129), Expect = 2e-07
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
Frame = +3
Query: 216 SLGIQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTR 395
SL + D + ++PL +++ E VL L+ R A L A G
Sbjct: 165 SLNVCDKKERQPLHWAAFLGHLE----VLKLLVARGADLGCKDRKGYGLLHTAAASGQIE 220
Query: 396 AADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDL 575
LLR GA ++ E TALHIA Q + LV GA++N+ + +PL +
Sbjct: 221 VVKYLLRMGAEID-EPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPND-KGFTPLHV 278
Query: 576 ASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIRLLLEGGAD 752
A+ CL+ L++ GADVN K GK+ LH A IH ++L++ G++
Sbjct: 279 AAVSTNGALCLELLVNNGADVNYQSKEGKSP-LHMAA------IHGRFTRSQILIQNGSE 331
Query: 753 VKATTKDGDT 782
+ K G+T
Sbjct: 332 IDCADKFGNT 341
Score = 50.4 bits (119), Expect = 3e-06
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Frame = +3
Query: 225 IQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAAD 404
++D E P+ P ++A+ L L E + AL E G T +
Sbjct: 577 LEDVESTIPVS-PLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVE 635
Query: 405 VLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHG--ADINRRDRIHESSPLDLA 578
VL +GA+ ++ +T LH A D + LL+ G ADI + +PL LA
Sbjct: 636 VLTAHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLA 695
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTAL 671
+ C+ LL+ G+ +AAD G+TAL
Sbjct: 696 IMNGH-VDCVHLLLEKGSTADAADLRGRTAL 725
>ref|XP_850948.1| PREDICTED: similar to ankyrin repeat domain 2 [Canis familiaris].
Length = 329
Score = 64.3 bits (155), Expect = 2e-10
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 4/187 (2%)
Frame = +3
Query: 234 PERQE---PLDGPSYV-ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAA 401
PE +E P++ +++ A+ E ++ V+ + L + AL + + G
Sbjct: 107 PEPEEITGPVEEETFLKAAVEGKMKVIEKFLADGGSPDTCDQFRRTALHRASLEGHMEIL 166
Query: 402 DVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLAS 581
+ LL +GA ++F+D + TA+H A ++V+LL GAD N RD++ S+PL +A
Sbjct: 167 EKLLESGATVDFQDRLDC-TAMHWACRGGHLEVVKLLQSRGADTNIRDKLL-STPLHVAV 224
Query: 582 EEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKA 761
+ +Q L LG D+NA D+ G +AL D V+++ + I+LLL GAD+
Sbjct: 225 RTGH-VEIVQHFLSLGLDINAKDREGDSAL------HDAVRLNRYKIIKLLLLHGADMMT 277
Query: 762 TTKDGDT 782
G T
Sbjct: 278 KNLAGKT 284
>ref|XP_855977.1| PREDICTED: similar to kinase D-interacting substance of 220 kDa
isoform 3 [Canis familiaris].
Length = 1006
Score = 63.2 bits (152), Expect = 4e-10
Identities = 49/170 (28%), Positives = 87/170 (51%)
Frame = +3
Query: 273 ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVT 452
AS+E + ++ ELL+ + G AL+ G T ++LL +GAN +
Sbjct: 78 ASKEGHVHIVEELLKCGVNLEHRDMGGWTALMWACYKGRTEVVELLLSHGANPSVTGLQY 137
Query: 453 YYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGA 632
+ A R D+V LL+++GA +N D+ + ++PL A+ + L C++ LL +GA
Sbjct: 138 SVYPIIWAAGRGHADIVHLLLQNGAKVNCSDK-YGTTPLVWAARK-GHLECVKHLLAMGA 195
Query: 633 DVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDT 782
DV+ + TAL+ A+ T++++ +L+ +V T KDG+T
Sbjct: 196 DVDQEGANSMTALIVAVKGG------YTQSVKEILKRNPNVNLTDKDGNT 239
>ref|XP_855938.1| PREDICTED: similar to kinase D-interacting substance of 220 kDa
isoform 2 [Canis familiaris].
Length = 1716
Score = 63.2 bits (152), Expect = 4e-10
Identities = 49/170 (28%), Positives = 87/170 (51%)
Frame = +3
Query: 273 ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVT 452
AS+E + ++ ELL+ + G AL+ G T ++LL +GAN +
Sbjct: 78 ASKEGHVHIVEELLKCGVNLEHRDMGGWTALMWACYKGRTEVVELLLSHGANPSVTGLQY 137
Query: 453 YYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGA 632
+ A R D+V LL+++GA +N D+ + ++PL A+ + L C++ LL +GA
Sbjct: 138 SVYPIIWAAGRGHADIVHLLLQNGAKVNCSDK-YGTTPLVWAARK-GHLECVKHLLAMGA 195
Query: 633 DVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDT 782
DV+ + TAL+ A+ T++++ +L+ +V T KDG+T
Sbjct: 196 DVDQEGANSMTALIVAVKGG------YTQSVKEILKRNPNVNLTDKDGNT 239
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,427,247
Number of extensions: 851032
Number of successful extensions: 5969
Number of sequences better than 1.0e-05: 108
Number of HSP's gapped: 5342
Number of HSP's successfully gapped: 203
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013799
(993 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093407.1| ankyrin repeat and SOCS box protein 6 [Sus s... 477 e-143
Alignment gi|NP_001193378.1| serine/threonine-protein phosphatase 6 regul... 72 6e-13
Alignment gi|NP_999087.1| ankyrin repeat domain-containing protein 1 [Sus... 66 3e-11
Alignment gi|XP_001927751.3| PREDICTED: serine/threonine-protein phosphat... 65 6e-11
Alignment gi|XP_003355689.1| PREDICTED: ankyrin repeat and SOCS box prote... 61 8e-10
Alignment gi|NP_001190196.1| ankyrin repeat and KH domain-containing prot... 60 1e-09
Alignment gi|XP_003353515.1| PREDICTED: uveal autoantigen with coiled-coi... 60 2e-09
Alignment gi|XP_003121815.2| PREDICTED: uveal autoantigen with coiled-coi... 60 2e-09
Alignment gi|XP_003125839.1| PREDICTED: ankyrin repeat domain-containing ... 59 3e-09
Alignment gi|XP_003134287.2| PREDICTED: ankyrin repeat domain-containing ... 59 4e-09
>ref|NP_001093407.1| ankyrin repeat and SOCS box protein 6 [Sus scrofa].
Length = 421
Score = 477 bits (1227), Expect(2) = e-143
Identities = 240/241 (99%), Positives = 241/241 (100%)
Frame = +3
Query: 147 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA 326
MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA
Sbjct: 1 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA 60
Query: 327 HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 506
HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE
Sbjct: 61 HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 120
Query: 507 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 686
LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA
Sbjct: 121 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 180
Query: 687 SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF 866
SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF
Sbjct: 181 SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF 240
Query: 867 K 869
+
Sbjct: 241 Q 241
Score = 50.4 bits (119), Expect(2) = e-143
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 887 AHGADPSECPAHESLTHICPQSF 955
AHGADPSECPAHESLTHIC +SF
Sbjct: 248 AHGADPSECPAHESLTHICLKSF 270
>ref|NP_001193378.1| serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A [Sus scrofa].
Length = 1086
Score = 71.6 bits (174), Expect = 6e-13
Identities = 50/154 (32%), Positives = 83/154 (53%)
Frame = +3
Query: 309 LLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRN 488
L+ +K F L A LG ++L+ +GA +N +D + T LH AV
Sbjct: 60 LIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDS-KWLTPLHRAVASC 118
Query: 489 QPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTA 668
+ V++L++H AD+N RD+ + +PL +A+ + + C + L+ L ++VN +D+ G+TA
Sbjct: 119 SEEAVQVLLKHSADVNARDK-NWQTPLHIAAAN-KAVKCAEALVPLLSNVNVSDRAGRTA 176
Query: 669 LLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
L HA S G E ++LLL GA++ A K
Sbjct: 177 LHHAAFSGHG------EMVKLLLSRGANINAFDK 204
Score = 52.8 bits (125), Expect = 3e-07
Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 28/202 (13%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFE 440
P ++A+ + L+ ++ AL A G +LL GAN+N
Sbjct: 143 PLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAF 202
Query: 441 DPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLL 620
D A+H A ++V+LLV HGA++ +D+ +PL A+ + ++ LL
Sbjct: 203 DKKDR-RAIHWAAYMGHIEVVKLLVAHGAEVTCKDK-KSYTPLHAAASS-GMISVVKYLL 259
Query: 621 DLGADVNAADKHGKTALLHALASSDGVQI----------------------------HNT 716
DLG D+N + +G T L A + V + H
Sbjct: 260 DLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNEKGFTPLHFAAASTHGA 319
Query: 717 ENIRLLLEGGADVKATTKDGDT 782
+ LL+ GADV +KDG T
Sbjct: 320 LCLELLVSNGADVNMKSKDGKT 341
Score = 50.8 bits (120), Expect = 1e-06
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Frame = +3
Query: 375 AELGLTRAADVLLRNGANLNFEDPVTY-YTALHIAVLRNQPDMVELLVRHGADINRRDRI 551
A G+ LL G ++N +P Y T LH+A Q +V L+ GA++N+++
Sbjct: 247 ASSGMISVVKYLLDLGVDMN--EPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNE- 303
Query: 552 HESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIR 728
+PL A+ CL+ L+ GADVN K GKT LH A +H +
Sbjct: 304 KGFTPLHFAAASTHGALCLELLVSNGADVNMKSKDGKTP-LHMTA------LHGRFSRSQ 356
Query: 729 LLLEGGADVKATTKDGDT 782
+++ GA + K+G+T
Sbjct: 357 TIIQSGAVIDCEDKNGNT 374
Score = 50.8 bits (120), Expect = 1e-06
Identities = 42/126 (33%), Positives = 61/126 (48%)
Frame = +3
Query: 399 ADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA 578
+ ++++GA ++ ED T LHIA ++ L+ GAD +R IH PL LA
Sbjct: 355 SQTIIQSGAVIDCEDK-NGNTPLHIAARYGHELLINTLITSGADTAKRG-IHGMFPLHLA 412
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVK 758
+ C ++LL G D++ D G+T LHA A+ N E + LLL GAD
Sbjct: 413 ALSGFS-DCCRKLLSSGFDIDTPDDFGRTC-LHAAAAGG-----NLECLNLLLNTGADFN 465
Query: 759 ATTKDG 776
K G
Sbjct: 466 KKDKFG 471
>ref|NP_999087.1| ankyrin repeat domain-containing protein 1 [Sus scrofa].
Length = 319
Score = 66.2 bits (160), Expect = 3e-11
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 4/196 (2%)
Frame = +3
Query: 225 IQDPERQ---EPLDGPSYV-ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLT 392
+++PE + EP+D P ++ A+ E+++ V+ + L K + E AL + G
Sbjct: 107 VKEPEPEVITEPVDVPRFLKAALENKLPVVEKFLSDKNNPDVCDEYKRTALHRACLEGHL 166
Query: 393 RAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLD 572
+ L+ GA + F D + TA+H A D+++LL+ GA I+ RD++ S+ L
Sbjct: 167 AIVEKLIEAGAQIEFRDMLES-TAIHWASRGGNLDVLKLLLNKGAKISARDKL-LSTALH 224
Query: 573 LASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGAD 752
+A C + L+ AD+NA D+ G T L D V+++ + IRLL+ GAD
Sbjct: 225 VA-VRTGHYECAEHLIACEADLNAKDREGDTPL------HDAVRLNRYKMIRLLITYGAD 277
Query: 753 VKATTKDGDTVFTCII 800
+ G T ++
Sbjct: 278 LNVKNCAGKTPMDLVL 293
>ref|XP_001927751.3| PREDICTED: serine/threonine-protein phosphatase 6 regulatory
ankyrin repeat subunit C [Sus scrofa].
Length = 623
Score = 65.1 bits (157), Expect = 6e-11
Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 1/175 (0%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAEL-GLTRAADVLLRNGANLNF 437
P +VA+ + + ELL YQ + L MA + G + +L++NG+ ++
Sbjct: 201 PLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDC 260
Query: 438 EDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRL 617
D T LH+A ++ L+ +GAD RR IH+ PL LA C + L
Sbjct: 261 ADKFGN-TPLHVAARYGHELLISTLMTNGADTARRG-IHDMFPLHLAVLFGFSDCCRKLL 318
Query: 618 LDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDT 782
G D+N D G+T LHA AS N E + LLL GAD++ K G T
Sbjct: 319 SSAGFDINTPDNLGRTC-LHAAASGG-----NVECLNLLLSSGADLRRRDKFGRT 367
Score = 51.2 bits (121), Expect = 9e-07
Identities = 41/119 (34%), Positives = 54/119 (45%)
Frame = +3
Query: 384 GLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESS 563
G ++LL +GA+L D T LH A LV GA +N D S
Sbjct: 343 GNVECLNLLLSSGADLRRRDKFGR-TPLHYAAANGSYQCAVTLVTAGAGVNEAD-CKGCS 400
Query: 564 PLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLE 740
PL A+ CL+ LLD GAD + D+ G TA+ +A A N +N+ LLLE
Sbjct: 401 PLHYAAASDTYRSCLEFLLDNGADPSLRDRQGYTAVHYAAAYG------NRQNLELLLE 453
Score = 50.4 bits (119), Expect = 1e-06
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Frame = +3
Query: 225 IQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAAD 404
++D E P+ P ++A+ L L E + AL E G T +
Sbjct: 459 LEDVESTIPVS-PLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVE 517
Query: 405 VLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHG--ADINRRDRIHESSPLDLA 578
VL +GA+ ++ +T LH A D + LL+ G ADI + +PL LA
Sbjct: 518 VLTAHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLA 577
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTAL 671
+ C+ LL+ G+ +AAD G+TAL
Sbjct: 578 IMNGH-VDCVHLLLEKGSTADAADLRGRTAL 607
>ref|XP_003355689.1| PREDICTED: ankyrin repeat and SOCS box protein 8-like [Sus scrofa].
Length = 288
Score = 61.2 bits (147), Expect = 8e-10
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Frame = +3
Query: 402 DVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLAS 581
++LL GA +N D TALH A +++ VE+L+ +GA+ N D + +PL A+
Sbjct: 70 ELLLEKGAEVNALDGYNR-TALHYAAEKDEA-CVEVLLEYGANPNALDG-NRDTPLHWAA 126
Query: 582 EEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKA 761
+ C++ LL+ GA VNA D + T L A N E++ +LL+ GA+V+
Sbjct: 127 FK-NNAECVRALLESGASVNALDYNNDTPLSWAAMKG------NLESVSILLDYGAEVRV 179
Query: 762 TTKDGDTVFTCIIFLLGETVGGDKEEA--QLINR 857
G T + ++ LL +G +KE++ +L++R
Sbjct: 180 INLKGQTPISRLVALLVRGLGTEKEDSCFELLHR 213
>ref|NP_001190196.1| ankyrin repeat and KH domain-containing protein 1 [Sus scrofa].
Length = 2540
Score = 60.5 bits (145), Expect = 1e-09
Identities = 55/195 (28%), Positives = 93/195 (47%)
Frame = +3
Query: 198 VDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMA 377
V +L G Q + + P +A+ + + L+ER A+ + L++ A
Sbjct: 415 VARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAA 474
Query: 378 ELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHE 557
G +LL GAN+N + T TAL +A ++ + L++ GADI +
Sbjct: 475 REGHEEMVALLLAQGANINAQTEETQETALTLACCGGFAEVADFLIKAGADI----ELGC 530
Query: 558 SSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLL 737
S+PL AS+E L ++ LL GA+V+A G TAL +A + +T+ +LL
Sbjct: 531 STPLMEASQE-GHLELVKYLLAAGANVHATTATGDTALTYACENG------HTDVADVLL 583
Query: 738 EGGADVKATTKDGDT 782
+ GAD++ ++ G T
Sbjct: 584 QAGADLEHESEGGRT 598
Score = 53.5 bits (127), Expect = 2e-07
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 2/176 (1%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMA-ELGLTRAADVLLRNGANLNF 437
P +A+ + V+ LL++ E + L +A G D+LL GAN
Sbjct: 1086 PLILAATAGHVGVVEILLDKGGDIEAQSERTKDTPLSLACSGGRQEVVDLLLARGANKEH 1145
Query: 438 EDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHES-SPLDLASEEPERLPCLQR 614
+ V+ YT L +A +++++L+ GA+IN R SPL LA+ +P ++
Sbjct: 1146 RN-VSDYTPLSLAASGGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGH-VPAVKL 1203
Query: 615 LLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDT 782
LLD+G+D+NA + + L LA G E + LLL+ A+V+ K G T
Sbjct: 1204 LLDMGSDINAQIETNRNTAL-TLACFQG----RAEVVSLLLDRKANVEHRAKTGLT 1254
Score = 52.4 bits (124), Expect = 4e-07
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Frame = +3
Query: 270 VASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFED-P 446
+A + R V++ LL+RKA+ + L++ A G VLL GA++N P
Sbjct: 1225 LACFQGRAEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVP 1284
Query: 447 VTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDL 626
+ TAL IA + ELL+ GA I+ R++ ++PL LAS +Q L+
Sbjct: 1285 SSRDTALTIAADKGHYKFCELLINRGAHIDVRNK-KGNTPLWLAS-NGGHFDVVQLLVRA 1342
Query: 627 GADVNAADKHGKTALLHA 680
GADV+AAD T L+ A
Sbjct: 1343 GADVDAADNRKITPLMSA 1360
>ref|XP_003353515.1| PREDICTED: uveal autoantigen with coiled-coil domains and ankyrin
repeats protein-like isoform 2 [Sus scrofa].
Length = 1417
Score = 59.7 bits (143), Expect = 2e-09
Identities = 51/186 (27%), Positives = 83/186 (44%)
Frame = +3
Query: 198 VDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMA 377
V +IL G+ + +V + + + L +L NAL A
Sbjct: 51 VSSILAKKGVNPGKLDVEGRSAFHVVASKGNLECLNAILIHGVDITIGDTAGRNALHLAA 110
Query: 378 ELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHE 557
+ G LL+ D + TALH A + + P ++LL HGA +N +D +
Sbjct: 111 KYGHALCLQKLLQYNCPTEHVD-LQGRTALHDAAMADCPSSIQLLCDHGASVNAKD-VDG 168
Query: 558 SSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLL 737
+PL LA++ C Q L+D GAD+N+ DK +TAL+ G + + + +L+
Sbjct: 169 RTPLVLATQMCRPTIC-QLLIDRGADINSRDKQNRTALML------GCEYGCKDAVEVLM 221
Query: 738 EGGADV 755
+ GADV
Sbjct: 222 KNGADV 227
>ref|XP_003121815.2| PREDICTED: uveal autoantigen with coiled-coil domains and ankyrin
repeats protein-like isoform 1 [Sus scrofa].
Length = 1403
Score = 59.7 bits (143), Expect = 2e-09
Identities = 51/186 (27%), Positives = 83/186 (44%)
Frame = +3
Query: 198 VDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMA 377
V +IL G+ + +V + + + L +L NAL A
Sbjct: 37 VSSILAKKGVNPGKLDVEGRSAFHVVASKGNLECLNAILIHGVDITIGDTAGRNALHLAA 96
Query: 378 ELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHE 557
+ G LL+ D + TALH A + + P ++LL HGA +N +D +
Sbjct: 97 KYGHALCLQKLLQYNCPTEHVD-LQGRTALHDAAMADCPSSIQLLCDHGASVNAKD-VDG 154
Query: 558 SSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLL 737
+PL LA++ C Q L+D GAD+N+ DK +TAL+ G + + + +L+
Sbjct: 155 RTPLVLATQMCRPTIC-QLLIDRGADINSRDKQNRTALML------GCEYGCKDAVEVLM 207
Query: 738 EGGADV 755
+ GADV
Sbjct: 208 KNGADV 213
>ref|XP_003125839.1| PREDICTED: ankyrin repeat domain-containing protein 35 [Sus
scrofa].
Length = 995
Score = 59.3 bits (142), Expect = 3e-09
Identities = 62/201 (30%), Positives = 85/201 (42%), Gaps = 32/201 (15%)
Frame = +3
Query: 270 VASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPV 449
VA+ SR L+ SPF+ A GLT +LL NGA++N ++
Sbjct: 36 VAALASRKSARPTKLDSNGQSPFHLA---------ASKGLTECLTILLANGADINSKNE- 85
Query: 450 TYYTALHIAVLRNQPDMVELLVRHGA-----DINRRDRIHES------------------ 560
TALH+A + QP V++L++HGA D+ R +H +
Sbjct: 86 DGSTALHLATISCQPQCVKVLLQHGANEDAVDVENRSPLHWAASSGCASSVLLLCDHEAF 145
Query: 561 ---------SPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHN 713
+PL +AS C Q LL GA VN DK+ K+AL+ LA G +
Sbjct: 146 LDVLDNGGRTPLMIASLGGHAAICSQ-LLQRGARVNITDKNDKSALI--LACEKG----S 198
Query: 714 TENIRLLLEGGADVKATTKDG 776
E LLL GAD A G
Sbjct: 199 AEVAELLLSHGADAGAVDSTG 219
>ref|XP_003134287.2| PREDICTED: ankyrin repeat domain-containing protein 26-like [Sus
scrofa].
Length = 1181
Score = 58.9 bits (141), Expect = 4e-09
Identities = 51/170 (30%), Positives = 81/170 (47%)
Frame = +3
Query: 267 YVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDP 446
++A R V+T L + K AL+K + +LL +GA+ N D
Sbjct: 77 HLACAGGRPAVVTLLAKWKCQLNICDSENRTALIKAVQCQQEECTSILLEHGADPNLVD- 135
Query: 447 VTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDL 626
V YTALH A + L+ + A+I RD+ + +PL LA E ++ ++ LL
Sbjct: 136 VKGYTALHYAAFGPNISIAAKLLSYNANIEARDK-DDLTPLLLAVSENQQ-QMVEFLLQK 193
Query: 627 GADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDG 776
A+++A DK +TAL+ A V ++ +RLLLE G D+ + G
Sbjct: 194 EANIHAVDKMKRTALILA------VNFASSSVVRLLLEQGVDISPQDRYG 237
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,314,189
Number of extensions: 532194
Number of successful extensions: 3317
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 3109
Number of HSP's successfully gapped: 74
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013799
(993 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_579924.1| ankyrin repeat and SOCS box protein 6 [Mus musc... 437 e-131
Alignment gi|NP_001019775.1| serine/threonine-protein phosphatase 6 regul... 72 7e-13
Alignment gi|NP_038496.2| ankyrin repeat domain-containing protein 1 [Mus... 69 7e-12
Alignment gi|NP_064417.1| ankyrin repeat domain-containing protein 2 [Mus... 68 1e-11
Alignment gi|NP_001074902.2| serine/threonine-protein phosphatase 6 regul... 67 2e-11
Alignment gi|NP_001074847.1| kinase D-interacting substrate of 220 kDa [M... 67 3e-11
Alignment gi|NP_766378.1| serine/threonine-protein phosphatase 6 regulato... 65 1e-10
Alignment gi|NP_001164182.1| ankyrin repeat and SOCS box protein 8 [Mus m... 61 1e-09
Alignment gi|NP_001164181.1| ankyrin repeat and SOCS box protein 8 [Mus m... 61 1e-09
Alignment gi|NP_084397.3| ankyrin repeat and SOCS box protein 8 [Mus musc... 61 1e-09
>ref|NP_579924.1| ankyrin repeat and SOCS box protein 6 [Mus musculus].
Length = 418
Score = 437 bits (1124), Expect(2) = e-131
Identities = 224/241 (92%), Positives = 233/241 (96%)
Frame = +3
Query: 147 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA 326
MPFLHGFRRIIFEYQPLVDAILG+LGIQD ERQEPLD + +SEESRILVLTELLE+KA
Sbjct: 1 MPFLHGFRRIIFEYQPLVDAILGALGIQDLERQEPLDDSA--SSEESRILVLTELLEQKA 58
Query: 327 HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 506
HSPFYQEGVSNALLKMAELGLTRAA VLL++GANLNFEDPVTYYTALHIAVLRNQPDMVE
Sbjct: 59 HSPFYQEGVSNALLKMAELGLTRAAAVLLQSGANLNFEDPVTYYTALHIAVLRNQPDMVE 118
Query: 507 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 686
LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADK+GKTALLHALA
Sbjct: 119 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKNGKTALLHALA 178
Query: 687 SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF 866
SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETV GDKEEA +INRFCF
Sbjct: 179 SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVCGDKEEAPMINRFCF 238
Query: 867 K 869
+
Sbjct: 239 Q 239
Score = 50.4 bits (119), Expect(2) = e-131
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 887 AHGADPSECPAHESLTHICPQSF 955
AHGADPSECPAHESLTHIC +SF
Sbjct: 246 AHGADPSECPAHESLTHICLKSF 268
>ref|NP_001019775.1| serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A [Mus musculus].
Length = 1053
Score = 72.0 bits (175), Expect = 7e-13
Identities = 50/154 (32%), Positives = 83/154 (53%)
Frame = +3
Query: 309 LLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRN 488
L+ +K F L A LG ++L+ +GA +N +D + T LH AV
Sbjct: 27 LIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDS-KWLTPLHRAVASC 85
Query: 489 QPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTA 668
+ V++L++H AD+N RD+ + +PL +A+ + + C + L+ L ++VN +D+ G+TA
Sbjct: 86 SEEAVQILLKHSADVNARDK-NWQTPLHIAAAN-KAVKCAESLVPLLSNVNVSDRAGRTA 143
Query: 669 LLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
L HA S G E ++LLL GA++ A K
Sbjct: 144 LHHAAFSGHG------EMVKLLLSRGANINAFDK 171
Score = 52.8 bits (125), Expect = 4e-07
Identities = 50/188 (26%), Positives = 83/188 (44%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFE 440
P ++A+ + L+ ++ AL A G +LL GAN+N
Sbjct: 110 PLHIAAANKAVKCAESLVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAF 169
Query: 441 DPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLL 620
D A+H A ++V+LLV HGA++ +D+ +PL A+ + ++ LL
Sbjct: 170 DKKDR-RAIHWAAYMGHIEVVKLLVSHGAEVTCKDK-KSYTPLHAAASS-GMISVVKYLL 226
Query: 621 DLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCII 800
DLG D+N + +G T L A + V ++ L++ GA+V + G FT +
Sbjct: 227 DLGVDMNEPNAYGNTPLHVACYNGQDVVVNE------LIDCGANVNQKNEKG---FTPLH 277
Query: 801 FLLGETVG 824
F T G
Sbjct: 278 FAAASTHG 285
Score = 50.8 bits (120), Expect = 2e-06
Identities = 42/126 (33%), Positives = 61/126 (48%)
Frame = +3
Query: 399 ADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA 578
+ ++++GA ++ ED T LHIA ++ L+ GAD +R IH PL LA
Sbjct: 322 SQTIIQSGAVIDCEDK-NGNTPLHIAARYGHELLINTLITSGADTAKRG-IHGMFPLHLA 379
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVK 758
+ C ++LL G D++ D G+T LHA A+ N E + LLL GAD
Sbjct: 380 ALSGFS-DCCRKLLSSGFDIDTPDDFGRTC-LHAAAAGG-----NLECLNLLLNTGADFN 432
Query: 759 ATTKDG 776
K G
Sbjct: 433 KKDKFG 438
Score = 50.4 bits (119), Expect = 2e-06
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Frame = +3
Query: 375 AELGLTRAADVLLRNGANLNFEDPVTY-YTALHIAVLRNQPDMVELLVRHGADINRRDRI 551
A G+ LL G ++N +P Y T LH+A Q +V L+ GA++N+++
Sbjct: 214 ASSGMISVVKYLLDLGVDMN--EPNAYGNTPLHVACYNGQDVVVNELIDCGANVNQKNE- 270
Query: 552 HESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIR 728
+PL A+ CL+ L+ GADVN K GKT LH A +H +
Sbjct: 271 KGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTP-LHMTA------LHGRFSRSQ 323
Query: 729 LLLEGGADVKATTKDGDT 782
+++ GA + K+G+T
Sbjct: 324 TIIQSGAVIDCEDKNGNT 341
>ref|NP_038496.2| ankyrin repeat domain-containing protein 1 [Mus musculus].
Length = 319
Score = 68.6 bits (166), Expect = 7e-12
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 4/196 (2%)
Frame = +3
Query: 225 IQDPERQ---EPLDGPSYV-ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLT 392
+++PE + EP+D P ++ A+ E+++ V+ + L K E AL + G
Sbjct: 107 VKEPEPEIMTEPVDVPRFLKAALENKLPVVEKFLSDKNSPDVCDEYKRTALHRACLEGHL 166
Query: 393 RAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLD 572
+ L+ GA + F D + TA+H A D+++LL+ GA I+ RD++ S+ L
Sbjct: 167 AIVEKLMEAGAQIEFRDMLES-TAIHWACRGGNADVLKLLLNKGAKISARDKLL-STALH 224
Query: 573 LASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGAD 752
+A C + L+ AD+NA D+ G T L D V+++ + IRLL+ GAD
Sbjct: 225 VAVRTGH-YECAEHLIACEADLNAKDREGDTPL------HDAVRLNRYKMIRLLMTFGAD 277
Query: 753 VKATTKDGDTVFTCII 800
+K G T ++
Sbjct: 278 LKVKNCAGKTPMDLVL 293
>ref|NP_064417.1| ankyrin repeat domain-containing protein 2 [Mus musculus].
Length = 328
Score = 67.8 bits (164), Expect = 1e-11
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 5/190 (2%)
Frame = +3
Query: 228 QDPERQEPLDGPS-----YVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLT 392
+ P E + GP A+ E ++ V+ + L + E AL + + G
Sbjct: 104 EPPPEPEEITGPVNEETFLKAAVEGKMKVIDKYLADGGSADTCDEFRRTALHRASLEGHM 163
Query: 393 RAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLD 572
+ LL NGA ++F+D + TA+H A ++V LL GAD N RD++ S+PL
Sbjct: 164 EILEKLLENGATVDFQDRLDC-TAMHWACRGGHLEVVRLLQSRGADTNVRDKLL-STPLH 221
Query: 573 LASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGAD 752
+A + ++ L LG D+NA D+ G +AL D V+++ + I+LLL GAD
Sbjct: 222 VAVRTGH-VEIVEHFLSLGLDINAKDREGDSAL------HDAVRLNRYKIIKLLLLHGAD 274
Query: 753 VKATTKDGDT 782
+ A G T
Sbjct: 275 MMAKNLAGKT 284
>ref|NP_001074902.2| serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit B [Mus musculus].
Length = 993
Score = 67.0 bits (162), Expect = 2e-11
Identities = 43/132 (32%), Positives = 76/132 (57%)
Frame = +3
Query: 375 AELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIH 554
A LG ++L+ +GA +N +D + + T LH AV + V++L++H AD+N RD+ +
Sbjct: 49 AFLGDAEIIELLILSGARVNAKDNM-WLTPLHRAVASRSEEAVQVLIKHSADVNARDK-N 106
Query: 555 ESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLL 734
+PL +A+ + + C + ++ L + VN +D+ G+TAL HA + + E + LL
Sbjct: 107 WQTPLHVAAAN-KAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNG------HMEMVNLL 159
Query: 735 LEGGADVKATTK 770
L GA++ A K
Sbjct: 160 LAKGANINAFDK 171
Score = 53.5 bits (127), Expect = 2e-07
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Frame = +3
Query: 426 NLNFE-DPVTYY--TALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPER 596
NL E D + Y TALHIA Q +V L+ +GA++N+ + +PL A+
Sbjct: 227 NLGVEIDEINVYGNTALHIACYNGQDAVVNELIDYGANVNQPNN-SGFTPLHFAAASTHG 285
Query: 597 LPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIRLLLEGGADVKATTKD 773
CL+ L++ GADVN K GK+ LH A +H + L++ G ++ KD
Sbjct: 286 ALCLELLVNNGADVNIQSKDGKSP-LHMTA------VHGRFTRSQTLIQNGGEIDCVDKD 338
Query: 774 GDT 782
G+T
Sbjct: 339 GNT 341
Score = 52.8 bits (125), Expect = 4e-07
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 31/203 (15%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFE 440
P +VA+ + ++ + G AL A G ++LL GAN+N
Sbjct: 110 PLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHMEMVNLLLAKGANINAF 169
Query: 441 DPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDR-----IHESSP----------LDL 575
D ALH A D+V LL+ HGA++ +D+ +H ++ L+L
Sbjct: 170 DKKDR-RALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQISVVKHLLNL 228
Query: 576 ASEEPE---------RLPC-------LQRLLDLGADVNAADKHGKTALLHALASSDGVQI 707
E E + C + L+D GA+VN + G T L A AS+
Sbjct: 229 GVEIDEINVYGNTALHIACYNGQDAVVNELIDYGANVNQPNNSGFTPLHFAAAST----- 283
Query: 708 HNTENIRLLLEGGADVKATTKDG 776
H + LL+ GADV +KDG
Sbjct: 284 HGALCLELLVNNGADVNIQSKDG 306
Score = 50.4 bits (119), Expect = 2e-06
Identities = 48/172 (27%), Positives = 72/172 (41%)
Frame = +3
Query: 267 YVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDP 446
+ A+ L L L+ A + + L A G + L++NG ++ D
Sbjct: 278 FAAASTHGALCLELLVNNGADVNIQSKDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDK 337
Query: 447 VTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDL 626
T LH+A ++ L+ GAD + IH PL LA+ C ++LL
Sbjct: 338 -DGNTPLHVAARHGHELLINTLITSGAD-TAKCGIHSMFPLHLAALNAHS-DCCRKLLSS 394
Query: 627 GADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDT 782
G +++ D G+T LHA A+ N E I+LL GAD K G T
Sbjct: 395 GFEIDTPDTFGRTC-LHAAAAGG-----NVECIKLLQSSGADFHKKDKCGRT 440
>ref|NP_001074847.1| kinase D-interacting substrate of 220 kDa [Mus musculus].
Length = 1793
Score = 66.6 bits (161), Expect = 3e-11
Identities = 52/170 (30%), Positives = 90/170 (52%)
Frame = +3
Query: 273 ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVT 452
AS+E I ++ ELL+ A+ G AL+ G T ++LL +GAN + +
Sbjct: 78 ASKEGHIHIVEELLKCGANLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSVTGLYS 137
Query: 453 YYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGA 632
Y + A R D+V LL+++GA +N D+ + ++PL A+ + L C++ LL +GA
Sbjct: 138 VYPIIW-AAGRGHADIVHLLLQNGAKVNCSDK-YGTTPLVWAARK-GHLECVKHLLAMGA 194
Query: 633 DVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDT 782
DV+ + TAL+ A+ T++++ +L+ +V T KDG+T
Sbjct: 195 DVDQEGANSMTALIVAVKGG------YTQSVKEILKRNPNVNLTDKDGNT 238
>ref|NP_766378.1| serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit C [Mus musculus].
Length = 1076
Score = 64.7 bits (156), Expect = 1e-10
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Frame = +3
Query: 255 DGPSYVASEESR-ILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANL 431
D P V + SR + + LL +K + + L A +G +LL +GAN+
Sbjct: 8 DQPPLVQAIFSRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANV 67
Query: 432 NFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQ 611
N +D + + T LH A ++ LL+ H AD+N RD++ + +PL +A+ C +
Sbjct: 68 NAKDTL-WLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQ-TPLHVAAAN-RATKCAE 124
Query: 612 RLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
L L + +N AD+ G++AL HA+ S + E + LLL GA + K
Sbjct: 125 ALAPLLSSLNVADRSGRSALHHAVHSG------HLETVNLLLNKGASLNVCDK 171
Score = 57.4 bits (137), Expect = 2e-08
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 18/192 (9%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAEL-GLTRAADVLLRNGANLNF 437
P +VA+ + + ELL YQ + L MA + G + +L++NG+ ++
Sbjct: 275 PLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDC 334
Query: 438 EDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA-----SEEPERLP 602
D T LH+A ++ L+ +GAD RR IH+ PL LA S+ +L
Sbjct: 335 ADKFGN-TPLHVAARYGHELLISTLMTNGADTARRG-IHDMFPLHLAVLFGFSDCCRKLL 392
Query: 603 CL------------QRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGG 746
+ +L G D+N D G+T LHA AS N E + LLL G
Sbjct: 393 SSGQLYSIVSSLSNEHVLSAGFDINTPDSLGRTC-LHAAASGG-----NVECLNLLLSSG 446
Query: 747 ADVKATTKDGDT 782
AD++ K G T
Sbjct: 447 ADLRRRDKFGRT 458
Score = 53.9 bits (128), Expect = 2e-07
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
Frame = +3
Query: 216 SLGIQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTR 395
SL + D + ++PL +++ E VL L+ R A L A G
Sbjct: 165 SLNVCDKKERQPLHWAAFLGHLE----VLKLLVARGADLSCKDRKGYGLLHTAAASGQIE 220
Query: 396 AADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDL 575
LLR GA ++ E TALHIA Q + LV GA++N+ + +PL +
Sbjct: 221 VVKHLLRMGAEID-EPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPND-KGFTPLHV 278
Query: 576 ASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIRLLLEGGAD 752
A+ CL+ L++ GADVN K GK+ LH A IH ++L++ G++
Sbjct: 279 AAVSTNGALCLELLVNNGADVNYQSKEGKSP-LHMAA------IHGRFTRSQILIQNGSE 331
Query: 753 VKATTKDGDT 782
+ K G+T
Sbjct: 332 IDCADKFGNT 341
Score = 50.8 bits (120), Expect = 2e-06
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Frame = +3
Query: 225 IQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAAD 404
++D E P+ P ++A+ L L E + AL E G T +
Sbjct: 577 LEDVESTVPVS-PLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVE 635
Query: 405 VLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHG--ADINRRDRIHESSPLDLA 578
VL +GA+ ++ +T LH A D + LL+ G ADI + +PL LA
Sbjct: 636 VLTAHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLA 695
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTAL 671
+ C+ LL+ G+ +AAD G+TAL
Sbjct: 696 IMNGH-VDCVHLLLEKGSTADAADLRGRTAL 725
>ref|NP_001164182.1| ankyrin repeat and SOCS box protein 8 [Mus musculus].
Length = 288
Score = 61.2 bits (147), Expect = 1e-09
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Frame = +3
Query: 402 DVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLAS 581
++LL GA +N D TALH A +++ VE+L+ +GA+ N D + +PL A+
Sbjct: 70 ELLLEKGAEVNALDGYNR-TALHYAAEKDEA-CVEVLLEYGANPNALDG-NRDTPLHWAA 126
Query: 582 EEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKA 761
+ C++ LL+ GA VNA D + T L A N E++ +LL+ GA+V+
Sbjct: 127 FK-NNAECVRALLESGASVNALDYNNDTPLSWAAMKG------NLESVSILLDYGAEVRV 179
Query: 762 TTKDGDTVFTCIIFLLGETVGGDKEEA--QLINR 857
G T + ++ LL +G +KE++ +L++R
Sbjct: 180 INLKGQTPISRLVALLVRGLGTEKEDSCFELLHR 213
>ref|NP_001164181.1| ankyrin repeat and SOCS box protein 8 [Mus musculus].
Length = 288
Score = 61.2 bits (147), Expect = 1e-09
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Frame = +3
Query: 402 DVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLAS 581
++LL GA +N D TALH A +++ VE+L+ +GA+ N D + +PL A+
Sbjct: 70 ELLLEKGAEVNALDGYNR-TALHYAAEKDEA-CVEVLLEYGANPNALDG-NRDTPLHWAA 126
Query: 582 EEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKA 761
+ C++ LL+ GA VNA D + T L A N E++ +LL+ GA+V+
Sbjct: 127 FK-NNAECVRALLESGASVNALDYNNDTPLSWAAMKG------NLESVSILLDYGAEVRV 179
Query: 762 TTKDGDTVFTCIIFLLGETVGGDKEEA--QLINR 857
G T + ++ LL +G +KE++ +L++R
Sbjct: 180 INLKGQTPISRLVALLVRGLGTEKEDSCFELLHR 213
>ref|NP_084397.3| ankyrin repeat and SOCS box protein 8 [Mus musculus].
Length = 288
Score = 61.2 bits (147), Expect = 1e-09
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Frame = +3
Query: 402 DVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLAS 581
++LL GA +N D TALH A +++ VE+L+ +GA+ N D + +PL A+
Sbjct: 70 ELLLEKGAEVNALDGYNR-TALHYAAEKDEA-CVEVLLEYGANPNALDG-NRDTPLHWAA 126
Query: 582 EEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKA 761
+ C++ LL+ GA VNA D + T L A N E++ +LL+ GA+V+
Sbjct: 127 FK-NNAECVRALLESGASVNALDYNNDTPLSWAAMKG------NLESVSILLDYGAEVRV 179
Query: 762 TTKDGDTVFTCIIFLLGETVGGDKEEA--QLINR 857
G T + ++ LL +G +KE++ +L++R
Sbjct: 180 INLKGQTPISRLVALLVRGLGTEKEDSCFELLHR 213
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,375,472
Number of extensions: 687289
Number of successful extensions: 4246
Number of sequences better than 1.0e-05: 72
Number of HSP's gapped: 3908
Number of HSP's successfully gapped: 104
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013799
(993 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060343.1| ankyrin repeat and SOCS box protein 6 isoform 1... 466 e-139
Alignment gi|NP_001189332.1| ankyrin repeat and SOCS box protein 6 isofor... 395 e-118
Alignment gi|NP_821066.1| ankyrin repeat and SOCS box protein 6 isoform 2... 256 2e-68
Alignment gi|NP_056014.2| serine/threonine-protein phosphatase 6 regulato... 72 1e-12
Alignment gi|NP_065082.2| ankyrin repeat domain-containing protein 2 isof... 70 2e-12
Alignment gi|NP_001182073.1| serine/threonine-protein phosphatase 6 regul... 67 2e-11
Alignment gi|NP_710181.2| serine/threonine-protein phosphatase 6 regulato... 67 2e-11
Alignment gi|NP_055206.2| ankyrin repeat domain-containing protein 1 [Hom... 66 4e-11
Alignment gi|NP_775866.2| serine/threonine-protein phosphatase 6 regulato... 65 1e-10
Alignment gi|NP_065789.1| kinase D-interacting substrate of 220 kDa [Homo... 65 1e-10
>ref|NP_060343.1| ankyrin repeat and SOCS box protein 6 isoform 1 [Homo sapiens].
Length = 421
Score = 466 bits (1198), Expect(2) = e-139
Identities = 234/241 (97%), Positives = 238/241 (98%)
Frame = +3
Query: 147 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA 326
MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQE LD PSYVASEESRILVLTELLERKA
Sbjct: 1 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQESLDRPSYVASEESRILVLTELLERKA 60
Query: 327 HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 506
HSPFYQEGVSNALLKMAELGLTRAADVLLR+GANLNFEDPVTYYTALHIAVLRNQPDMVE
Sbjct: 61 HSPFYQEGVSNALLKMAELGLTRAADVLLRHGANLNFEDPVTYYTALHIAVLRNQPDMVE 120
Query: 507 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 686
LLV HGAD+NRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA
Sbjct: 121 LLVHHGADVNRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 180
Query: 687 SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF 866
SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQ+INRFCF
Sbjct: 181 SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQMINRFCF 240
Query: 867 K 869
+
Sbjct: 241 Q 241
Score = 50.4 bits (119), Expect(2) = e-139
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 887 AHGADPSECPAHESLTHICPQSF 955
AHGADPSECPAHESLTHIC +SF
Sbjct: 248 AHGADPSECPAHESLTHICLKSF 270
>ref|NP_001189332.1| ankyrin repeat and SOCS box protein 6 isoform 3 [Homo sapiens].
Length = 392
Score = 395 bits (1015), Expect(2) = e-118
Identities = 205/241 (85%), Positives = 209/241 (86%)
Frame = +3
Query: 147 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA 326
MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQE LD PSYVASEESRILVLTELLERKA
Sbjct: 1 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQESLDRPSYVASEESRILVLTELLERKA 60
Query: 327 HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 506
HSPFYQEGVSNALLKMAELGLTRAADVLLR+GANLNFEDPVTYYTALHIAVLRNQPDMVE
Sbjct: 61 HSPFYQEGVSNALLKMAELGLTRAADVLLRHGANLNFEDPVTYYTALHIAVLRNQPDMVE 120
Query: 507 LLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALA 686
LLV HGAD+NRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKH
Sbjct: 121 LLVHHGADVNRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKH---------- 170
Query: 687 SSDGVQIHNTENIRLLLEGGADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQLINRFCF 866
GADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQ+INRFCF
Sbjct: 171 -------------------GADVKATTKDGDTVFTCIIFLLGETVGGDKEEAQMINRFCF 211
Query: 867 K 869
+
Sbjct: 212 Q 212
Score = 50.4 bits (119), Expect(2) = e-118
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 887 AHGADPSECPAHESLTHICPQSF 955
AHGADPSECPAHESLTHIC +SF
Sbjct: 219 AHGADPSECPAHESLTHICLKSF 241
>ref|NP_821066.1| ankyrin repeat and SOCS box protein 6 isoform 2 [Homo sapiens].
Length = 197
Score = 256 bits (655), Expect = 2e-68
Identities = 129/134 (96%), Positives = 131/134 (97%)
Frame = +3
Query: 147 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQEPLDGPSYVASEESRILVLTELLERKA 326
MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQE LD PSYVASEESRILVLTELLERKA
Sbjct: 1 MPFLHGFRRIIFEYQPLVDAILGSLGIQDPERQESLDRPSYVASEESRILVLTELLERKA 60
Query: 327 HSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVE 506
HSPFYQEGVSNALLKMAELGLTRAADVLLR+GANLNFEDPVTYYTALHIAVLRNQPDMVE
Sbjct: 61 HSPFYQEGVSNALLKMAELGLTRAADVLLRHGANLNFEDPVTYYTALHIAVLRNQPDMVE 120
Query: 507 LLVRHGADINRRDR 548
LLV HGAD+NRRDR
Sbjct: 121 LLVHHGADVNRRDR 134
Score = 80.9 bits (198), Expect = 2e-15
Identities = 37/48 (77%), Positives = 38/48 (79%)
Frame = +1
Query: 679 LWPAATGCRSTTPRTSGSCWKEGPTSRPPPKTGTRCSPASSSCWGRRW 822
LWPAATGCRST RT S WKEG TSRPPPK GT+CSPASSSC R W
Sbjct: 142 LWPAATGCRSTILRTFVSYWKEGQTSRPPPKMGTQCSPASSSCLVRPW 189
>ref|NP_056014.2| serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A isoform a [Homo sapiens].
Length = 1053
Score = 71.6 bits (174), Expect = 1e-12
Identities = 50/154 (32%), Positives = 83/154 (53%)
Frame = +3
Query: 309 LLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRN 488
L+ +K F L A LG ++L+ +GA +N +D + T LH AV
Sbjct: 27 LIFKKEDVNFQDNEKRTPLHAAAYLGDAEIIELLILSGARVNAKDS-KWLTPLHRAVASC 85
Query: 489 QPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTA 668
+ V++L++H AD+N RD+ + +PL +A+ + + C + L+ L ++VN +D+ G+TA
Sbjct: 86 SEEAVQVLLKHSADVNARDK-NWQTPLHIAAAN-KAVKCAEALVPLLSNVNVSDRAGRTA 143
Query: 669 LLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
L HA S G E ++LLL GA++ A K
Sbjct: 144 LHHAAFSGHG------EMVKLLLSRGANINAFDK 171
Score = 52.0 bits (123), Expect = 8e-07
Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 28/202 (13%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFE 440
P ++A+ + L+ ++ AL A G +LL GAN+N
Sbjct: 110 PLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAF 169
Query: 441 DPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLL 620
D A+H A ++V+LLV HGA++ +D+ +PL A+ + ++ LL
Sbjct: 170 DKKDR-RAIHWAAYMGHIEVVKLLVSHGAEVTCKDK-KSYTPLHAAASS-GMISVVKYLL 226
Query: 621 DLGADVNAADKHGKTALLHALASSDGVQI----------------------------HNT 716
DLG D+N + +G T L A + V + H
Sbjct: 227 DLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGA 286
Query: 717 ENIRLLLEGGADVKATTKDGDT 782
+ LL+ GADV +KDG T
Sbjct: 287 LCLELLVGNGADVNMKSKDGKT 308
Score = 50.8 bits (120), Expect = 2e-06
Identities = 42/126 (33%), Positives = 61/126 (48%)
Frame = +3
Query: 399 ADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA 578
+ ++++GA ++ ED T LHIA ++ L+ GAD +R IH PL LA
Sbjct: 322 SQTIIQSGAVIDCEDK-NGNTPLHIAARYGHELLINTLITSGADTAKRG-IHGMFPLHLA 379
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVK 758
+ C ++LL G D++ D G+T LHA A+ N E + LLL GAD
Sbjct: 380 ALSGFS-DCCRKLLSSGFDIDTPDDFGRTC-LHAAAAGG-----NLECLNLLLNTGADFN 432
Query: 759 ATTKDG 776
K G
Sbjct: 433 KKDKFG 438
Score = 48.9 bits (115), Expect = 7e-06
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Frame = +3
Query: 375 AELGLTRAADVLLRNGANLNFEDPVTY-YTALHIAVLRNQPDMVELLVRHGADINRRDRI 551
A G+ LL G ++N +P Y T LH+A Q +V L+ GA +N+++
Sbjct: 214 ASSGMISVVKYLLDLGVDMN--EPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNE- 270
Query: 552 HESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIR 728
+PL A+ CL+ L+ GADVN K GKT LH A +H +
Sbjct: 271 KGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTP-LHMTA------LHGRFSRSQ 323
Query: 729 LLLEGGADVKATTKDGDT 782
+++ GA + K+G+T
Sbjct: 324 TIIQSGAVIDCEDKNGNT 341
>ref|NP_065082.2| ankyrin repeat domain-containing protein 2 isoform a [Homo
sapiens].
Length = 360
Score = 70.5 bits (171), Expect = 2e-12
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 4/187 (2%)
Frame = +3
Query: 234 PERQE---PLDGPSYV-ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAA 401
PE +E P+D +++ A+ E ++ V+ + L + + AL + + G
Sbjct: 138 PEPEEITGPVDEETFLKAAVEGKMKVIEKFLADGGSADTCDQFRRTALHRASLEGHMEIL 197
Query: 402 DVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLAS 581
+ LL NGA ++F+D + TA+H A ++V+LL HGAD N RD++ S+PL +A
Sbjct: 198 EKLLDNGATVDFQDRLDC-TAMHWACRGGHLEVVKLLQSHGADTNVRDKL-LSTPLHVAV 255
Query: 582 EEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKA 761
+ + ++ L LG ++NA D+ G TAL D V+++ + I+LLL GAD+
Sbjct: 256 RTGQ-VEIVEHFLSLGLEINARDREGDTAL------HDAVRLNRYKIIKLLLLHGADMMT 308
Query: 762 TTKDGDT 782
G T
Sbjct: 309 KNLAGKT 315
>ref|NP_001182073.1| serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit B isoform A [Homo sapiens].
Length = 993
Score = 67.4 bits (163), Expect = 2e-11
Identities = 43/132 (32%), Positives = 76/132 (57%)
Frame = +3
Query: 375 AELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIH 554
A LG ++L+ +GA +N +D + + T LH AV + V++L++H AD+N RD+ +
Sbjct: 49 AFLGDAEIIELLILSGARVNAKDNM-WLTPLHRAVASRSEEAVQVLIKHSADVNARDK-N 106
Query: 555 ESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLL 734
+PL +A+ + + C + ++ L + VN +D+ G+TAL HA + + E + LL
Sbjct: 107 WQTPLHVAAAN-KAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNG------HVEMVNLL 159
Query: 735 LEGGADVKATTK 770
L GA++ A K
Sbjct: 160 LAKGANINAFDK 171
Score = 54.3 bits (129), Expect = 2e-07
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Frame = +3
Query: 426 NLNFE-DPVTYY--TALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPER 596
NL E D + Y TALHIA Q +V L+ +GA++N+ + + +PL A+
Sbjct: 227 NLGVEIDEINVYGNTALHIACYNGQDAVVNELIDYGANVNQPNN-NGFTPLHFAAASTHG 285
Query: 597 LPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIRLLLEGGADVKATTKD 773
CL+ L++ GADVN K GK+ LH A +H + L++ G ++ KD
Sbjct: 286 ALCLELLVNNGADVNIQSKDGKSP-LHMTA------VHGRFTRSQTLIQNGGEIDCVDKD 338
Query: 774 GDT 782
G+T
Sbjct: 339 GNT 341
Score = 53.9 bits (128), Expect = 2e-07
Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFE 440
P +VA+ + ++ + G AL A G ++LL GAN+N
Sbjct: 110 PLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHVEMVNLLLAKGANINAF 169
Query: 441 DPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDR-----IHESSP----------LDL 575
D ALH A D+V LL+ HGA++ +D+ +H ++ L+L
Sbjct: 170 DKKDR-RALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQINVVKHLLNL 228
Query: 576 ASEEPE---------RLPC-------LQRLLDLGADVNAADKHGKTALLHALASSDGVQI 707
E E + C + L+D GA+VN + +G T L A AS+
Sbjct: 229 GVEIDEINVYGNTALHIACYNGQDAVVNELIDYGANVNQPNNNGFTPLHFAAAST----- 283
Query: 708 HNTENIRLLLEGGADVKATTKDG 776
H + LL+ GADV +KDG
Sbjct: 284 HGALCLELLVNNGADVNIQSKDG 306
>ref|NP_710181.2| serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit B isoform B [Homo sapiens].
Length = 367
Score = 67.4 bits (163), Expect = 2e-11
Identities = 43/132 (32%), Positives = 76/132 (57%)
Frame = +3
Query: 375 AELGLTRAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIH 554
A LG ++L+ +GA +N +D + + T LH AV + V++L++H AD+N RD+ +
Sbjct: 49 AFLGDAEIIELLILSGARVNAKDNM-WLTPLHRAVASRSEEAVQVLIKHSADVNARDK-N 106
Query: 555 ESSPLDLASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLL 734
+PL +A+ + + C + ++ L + VN +D+ G+TAL HA + + E + LL
Sbjct: 107 WQTPLHVAAAN-KAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNG------HVEMVNLL 159
Query: 735 LEGGADVKATTK 770
L GA++ A K
Sbjct: 160 LAKGANINAFDK 171
Score = 54.3 bits (129), Expect = 2e-07
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Frame = +3
Query: 426 NLNFE-DPVTYY--TALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPER 596
NL E D + Y TALHIA Q +V L+ +GA++N+ + + +PL A+
Sbjct: 227 NLGVEIDEINVYGNTALHIACYNGQDAVVNELIDYGANVNQPNN-NGFTPLHFAAASTHG 285
Query: 597 LPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIRLLLEGGADVKATTKD 773
CL+ L++ GADVN K GK+ LH A +H + L++ G ++ KD
Sbjct: 286 ALCLELLVNNGADVNIQSKDGKSP-LHMTA------VHGRFTRSQTLIQNGGEIDCVDKD 338
Query: 774 GDT 782
G+T
Sbjct: 339 GNT 341
Score = 53.9 bits (128), Expect = 2e-07
Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFE 440
P +VA+ + ++ + G AL A G ++LL GAN+N
Sbjct: 110 PLHVAAANKAVKCAEVIIPLLSSVNVSDRGGRTALHHAALNGHVEMVNLLLAKGANINAF 169
Query: 441 DPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDR-----IHESSP----------LDL 575
D ALH A D+V LL+ HGA++ +D+ +H ++ L+L
Sbjct: 170 DKKDR-RALHWAAYMGHLDVVALLINHGAEVTCKDKKGYTPLHAAASNGQINVVKHLLNL 228
Query: 576 ASEEPE---------RLPC-------LQRLLDLGADVNAADKHGKTALLHALASSDGVQI 707
E E + C + L+D GA+VN + +G T L A AS+
Sbjct: 229 GVEIDEINVYGNTALHIACYNGQDAVVNELIDYGANVNQPNNNGFTPLHFAAAST----- 283
Query: 708 HNTENIRLLLEGGADVKATTKDG 776
H + LL+ GADV +KDG
Sbjct: 284 HGALCLELLVNNGADVNIQSKDG 306
>ref|NP_055206.2| ankyrin repeat domain-containing protein 1 [Homo sapiens].
Length = 319
Score = 66.2 bits (160), Expect = 4e-11
Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Frame = +3
Query: 225 IQDPERQ---EPLDGPSYV-ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLT 392
+++PE + EP+D P+++ A+ E+++ V+ + L K + E AL + G
Sbjct: 107 VKEPEPEIITEPVDVPTFLKAALENKLPVVEKFLSDKNNPDVCDEYKRTALHRACLEGHL 166
Query: 393 RAADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLD 572
+ L+ GA + F D + TA+H A D+++LL+ GA I+ RD++ S+ L
Sbjct: 167 AIVEKLMEAGAQIEFRDMLES-TAIHWASRGGNLDVLKLLLNKGAKISARDKL-LSTALH 224
Query: 573 LASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGAD 752
+A C + L+ AD+NA D+ G T L D V+++ + IRLL+ GAD
Sbjct: 225 VA-VRTGHYECAEHLIACEADLNAKDREGDTPL------HDAVRLNRYKMIRLLIMYGAD 277
Query: 753 VKATTKDGDTVFTCII 800
+ G T ++
Sbjct: 278 LNIKNCAGKTPMDLVL 293
>ref|NP_775866.2| serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit C [Homo sapiens].
Length = 1076
Score = 64.7 bits (156), Expect = 1e-10
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Frame = +3
Query: 255 DGPSYVASEESR-ILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANL 431
D P V + SR + + LL +K + + L A +G +LL +GAN+
Sbjct: 8 DQPPLVQAIFSRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANV 67
Query: 432 NFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQ 611
N +D + + T LH A ++ LL+ H AD+N RD++ + +PL +A+ C +
Sbjct: 68 NAKDTL-WLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQ-TPLHVAAAN-RATKCAE 124
Query: 612 RLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTK 770
L L + +N AD+ G++AL HA+ S + E + LLL GA + K
Sbjct: 125 ALAPLLSSLNVADRSGRSALHHAVHSG------HLETVNLLLNKGASLNVCDK 171
Score = 57.4 bits (137), Expect = 2e-08
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 18/192 (9%)
Frame = +3
Query: 261 PSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAEL-GLTRAADVLLRNGANLNF 437
P +VA+ + + ELL YQ + L MA + G + +L++NG+ ++
Sbjct: 275 PLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDC 334
Query: 438 EDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLA-----SEEPERLP 602
D T LH+A ++ L+ +GAD RR IH+ PL LA S+ +L
Sbjct: 335 ADKFGN-TPLHVAARYGHELLISTLMTNGADTARRG-IHDMFPLHLAVLFGFSDCCRKLL 392
Query: 603 CL------------QRLLDLGADVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGG 746
+ +L G D+N D G+T LHA AS N E + LLL G
Sbjct: 393 SSGQLYSIVSSLSNEHVLSAGFDINTPDNLGRTC-LHAAASGG-----NVECLNLLLSSG 446
Query: 747 ADVKATTKDGDT 782
AD++ K G T
Sbjct: 447 ADLRRRDKFGRT 458
Score = 54.3 bits (129), Expect = 2e-07
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
Frame = +3
Query: 216 SLGIQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTR 395
SL + D + ++PL +++ E VL L+ R A L A G
Sbjct: 165 SLNVCDKKERQPLHWAAFLGHLE----VLKLLVARGADLGCKDRKGYGLLHTAAASGQIE 220
Query: 396 AADVLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDL 575
LLR GA ++ E TALHIA Q + LV GA++N+ + +PL +
Sbjct: 221 VVKYLLRMGAEID-EPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPND-KGFTPLHV 278
Query: 576 ASEEPERLPCLQRLLDLGADVNAADKHGKTALLHALASSDGVQIHNT-ENIRLLLEGGAD 752
A+ CL+ L++ GADVN K GK+ LH A IH ++L++ G++
Sbjct: 279 AAVSTNGALCLELLVNNGADVNYQSKEGKSP-LHMAA------IHGRFTRSQILIQNGSE 331
Query: 753 VKATTKDGDT 782
+ K G+T
Sbjct: 332 IDCADKFGNT 341
Score = 50.4 bits (119), Expect = 2e-06
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Frame = +3
Query: 225 IQDPERQEPLDGPSYVASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAAD 404
++D E P+ P ++A+ L L E + AL E G T +
Sbjct: 577 LEDVESTIPVS-PLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVE 635
Query: 405 VLLRNGANLNFEDPVTYYTALHIAVLRNQPDMVELLVRHG--ADINRRDRIHESSPLDLA 578
VL +GA+ ++ +T LH A D + LL+ G ADI + +PL LA
Sbjct: 636 VLTAHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLA 695
Query: 579 SEEPERLPCLQRLLDLGADVNAADKHGKTAL 671
+ C+ LL+ G+ +AAD G+TAL
Sbjct: 696 IMNGH-VDCVHLLLEKGSTADAADLRGRTAL 725
>ref|NP_065789.1| kinase D-interacting substrate of 220 kDa [Homo sapiens].
Length = 1771
Score = 64.7 bits (156), Expect = 1e-10
Identities = 50/170 (29%), Positives = 89/170 (52%)
Frame = +3
Query: 273 ASEESRILVLTELLERKAHSPFYQEGVSNALLKMAELGLTRAADVLLRNGANLNFEDPVT 452
AS+E + ++ ELL+ + G AL+ G T ++LL +GAN + +
Sbjct: 78 ASKEGHVHIVEELLKCGVNLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSVTGLYS 137
Query: 453 YYTALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGA 632
Y + A R D+V LL+++GA +N D+ + ++PL A+ + L C++ LL +GA
Sbjct: 138 VYPIIWAAG-RGHADIVHLLLQNGAKVNCSDK-YGTTPLVWAARKGH-LECVKHLLAMGA 194
Query: 633 DVNAADKHGKTALLHALASSDGVQIHNTENIRLLLEGGADVKATTKDGDT 782
DV+ + TAL+ A+ T++++ +L+ +V T KDG+T
Sbjct: 195 DVDQEGANSMTALIVAVKGG------YTQSVKEILKRNPNVNLTDKDGNT 238
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,717,476
Number of extensions: 831269
Number of successful extensions: 5546
Number of sequences better than 1.0e-05: 98
Number of HSP's gapped: 5081
Number of HSP's successfully gapped: 155
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013799
(993 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 511 e-142
>Sscrofa_Chr01
|| Length = 315321322
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Minus
Query: 2 acttccggcgcggagcagcgggttgggctgtgtatgaggccgggttcggggactggacca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303701819 acttccggcgcggagcagcgggttgggctgtgtatgaggccgggttcggggactggacca 303701760
Query: 62 gtagtggccaaacctggccaagagcgcggctgccggaacgctcgcagtcggcgtctcggc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303701759 gtagtggccaaacctggccaagagcgcggctgccggaacgctcgcagtcggcgtctcggc 303701700
Query: 122 ctcagcggagggtgcggccgccgcaatgccgttcctgcacggcttccggaggatcatctt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303701699 ctcagcggagggtgcggccgccgcaatgccgttcctgcacggcttccggaggatcatctt 303701640
Query: 182 cgagtaccagccgctggtggacgcgattctgggctccttggggatccaggaccctgagcg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303701639 cgagtaccagccgctggtggacgcgattctgggctccttggggatccaggaccctgagcg 303701580
Query: 242 gcaggaacccctggacgg 259
||||||||||||||||||
Sbjct: 303701579 gcaggaacccctggacgg 303701562
Score = 424 bits (214), Expect = e-116
Identities = 247/254 (97%), Gaps = 3/254 (1%)
Strand = Plus / Minus
Query: 743 aggggccgacgtcaaggccaccaccaaagacggggacacggtgttcacctgcatcatctt 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303698098 aggggccgacgtcaaggccaccaccaaagacggggacacggtgttcacctgcatcatctt 303698039
Query: 803 cctgctgggggagacggtgggcggggacaaggaggaggcccagctcatcaaccgcttctg 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303698038 cctgctgggggagacggtgggcggggacaaggaggaggcccagctcatcaaccgcttctg 303697979
Query: 863 ctt-caagtgacgcggctgctgctggctcacggcgccgaccccagcgagtgccccgcgca 921
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303697978 cttccaagtgacgcggctgctgctggctcacggcgccgaccccagcgagtgccccgcgca 303697919
Query: 922 cgagtccctcacccacatctgccctcagagc-ttcagctgcacttccctct-ctgcgctt 979
||||||||||||||||||||||| ||||| || |||||||||||||||| ||||||||
Sbjct: 303697918 cgagtccctcacccacatctgcctcaagagctttaagctgcacttccctctcctgcgctt 303697859
Query: 980 cctgctggagtccg 993
||||||||||||||
Sbjct: 303697858 cctgctggagtccg 303697845
Score = 355 bits (179), Expect = 3e-95
Identities = 182/183 (99%)
Strand = Plus / Minus
Query: 259 gacccagttatgtcgcgagtgaggagagccggatccttgttctcactgagctgctggaga 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303700561 gacccagttatgtcgcgagtgaggagagccggatccttgttctcactgagctgctggaga 303700502
Query: 319 gaaaggcccactctcccttctaccaggaaggcgtgagcaacgccctgctgaagatggccg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303700501 gaaaggcccactctcccttctaccaggaaggcgtgagcaacgccctgctgaagatggccg 303700442
Query: 379 agctggggctgacccgtgccgctgacgttctcctgcggaatggagccaacctcaactttg 438
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 303700441 agctggggctgacccgtgctgctgacgttctcctgcggaatggagccaacctcaactttg 303700382
Query: 439 aag 441
|||
Sbjct: 303700381 aag 303700379
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 548 gatccatgagagcagccccttggacctggccagcgaggagcccgagcgcttgccctgcct 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303698780 gatccatgagagcagccccttggacctggccagcgaggagcccgagcgcttgccctgcct 303698721
Query: 608 gcagcgcctcctggacctcggcgcagacgtcaacgcggccgacaagcacgg 658
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303698720 gcagcgcctcctggacctcggcgcagacgtcaacgcggccgacaagcacgg 303698670
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 440 agacccggtcacctactacacggctctgcacatcgccgtcctgcgaaaccagcctgacat 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303698978 agacccggtcacctactacacggctctgcacatcgccgtcctgcgaaaccagcctgacat 303698919
Query: 500 ggtggagctgctggtgcgccacggggccgacattaaccggagggaccgg 548
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303698918 ggtggagctgctggtgcgccacggggccgacattaaccggagggaccgg 303698870
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 657 gggaagacggccctgctccacgctctggccagcagcgacggggtgcagatccacaacacc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303698280 gggaagacggccctgctccacgctctggccagcagcgacggggtgcagatccacaacacc 303698221
Query: 717 gagaacatccggctcctgctggaaggagg 745
|||||||||||||||||||||||||||||
Sbjct: 303698220 gagaacatccggctcctgctggaaggagg 303698192
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,434,405
Number of extensions: 112
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 6
Length of query: 993
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 972
Effective length of database: 2,808,413,156
Effective search space: 2729777587632
Effective search space used: 2729777587632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)