Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013800
(992 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003905.1| transcription factor IIB [Bos taurus]. 393 e-109
>ref|NP_001003905.1| transcription factor IIB [Bos taurus].
Length = 193
Score = 393 bits (1010), Expect = e-109
Identities = 193/193 (100%), Positives = 193/193 (100%)
Frame = +1
Query: 226 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 405
MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60
Query: 406 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 585
CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 586 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 765
MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 766 FKLYLPVQNKAKQ 804
FKLYLPVQNKAKQ
Sbjct: 181 FKLYLPVQNKAKQ 193
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,306,625
Number of extensions: 893255
Number of successful extensions: 2194
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2193
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013800
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013800
(992 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544382.2| PREDICTED: similar to transcription factor IIB ... 393 e-109
>ref|XP_544382.2| PREDICTED: similar to transcription factor IIB [Canis familiaris].
Length = 193
Score = 393 bits (1010), Expect = e-109
Identities = 193/193 (100%), Positives = 193/193 (100%)
Frame = +1
Query: 226 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 405
MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60
Query: 406 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 585
CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 586 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 765
MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 766 FKLYLPVQNKAKQ 804
FKLYLPVQNKAKQ
Sbjct: 181 FKLYLPVQNKAKQ 193
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,766,964
Number of extensions: 911933
Number of successful extensions: 2141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2140
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013800
(992 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127006.1| PREDICTED: UPF0468 protein C16orf80 homolog ... 393 e-110
>ref|XP_003127006.1| PREDICTED: UPF0468 protein C16orf80 homolog [Sus scrofa].
Length = 193
Score = 393 bits (1010), Expect = e-110
Identities = 193/193 (100%), Positives = 193/193 (100%)
Frame = +1
Query: 226 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 405
MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60
Query: 406 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 585
CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 586 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 765
MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 766 FKLYLPVQNKAKQ 804
FKLYLPVQNKAKQ
Sbjct: 181 FKLYLPVQNKAKQ 193
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,692,814
Number of extensions: 570633
Number of successful extensions: 1515
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1515
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013800
(992 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032213.2| gene trap locus 3 [Mus musculus]. 393 e-109
>ref|NP_032213.2| gene trap locus 3 [Mus musculus].
Length = 193
Score = 393 bits (1010), Expect = e-109
Identities = 193/193 (100%), Positives = 193/193 (100%)
Frame = +1
Query: 226 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 405
MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60
Query: 406 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 585
CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 586 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 765
MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 766 FKLYLPVQNKAKQ 804
FKLYLPVQNKAKQ
Sbjct: 181 FKLYLPVQNKAKQ 193
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,966,320
Number of extensions: 777162
Number of successful extensions: 1874
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1872
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013800
(992 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037374.1| transcription factor IIB [Homo sapiens]. 391 e-109
>ref|NP_037374.1| transcription factor IIB [Homo sapiens].
Length = 193
Score = 391 bits (1004), Expect = e-109
Identities = 192/193 (99%), Positives = 192/193 (99%)
Frame = +1
Query: 226 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 405
MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT
Sbjct: 1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60
Query: 406 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 585
CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT
Sbjct: 61 CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120
Query: 586 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 765
MPMRLDDGWNQIQFNL DFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE
Sbjct: 121 MPMRLDDGWNQIQFNLLDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180
Query: 766 FKLYLPVQNKAKQ 804
FKLYLPVQNKAKQ
Sbjct: 181 FKLYLPVQNKAKQ 193
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,201,498
Number of extensions: 906986
Number of successful extensions: 2244
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2241
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013800
(992 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 605 e-170
>Sscrofa_Chr06
|| Length = 157765593
Score = 605 bits (305), Expect = e-170
Identities = 308/309 (99%)
Strand = Plus / Minus
Query: 3 agttgctgtggtgtcggtgctgaggcggcttcgttcttctgctagtgagcctcgcggatg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17993262 agttgctgtggtgtcggtgctgaggcggcttcgttcttctgctagtgagcctcgcggatg 17993203
Query: 63 tagagttccgcgtctaagtcctgctgtctgcggctaccaattgggaggtcaggagcgcag 122
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17993202 tagagtcccgcgtctaagtcctgctgtctgcggctaccaattgggaggtcaggagcgcag 17993143
Query: 123 ggtactttctttgggccagagccggcccccttttttgccttcgccactaagtgaagccat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17993142 ggtactttctttgggccagagccggcccccttttttgccttcgccactaagtgaagccat 17993083
Query: 183 ttaggtcagcttccgcgcggctgaggagaaggccgccggcgatatgttcaaaaacacgtt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17993082 ttaggtcagcttccgcgcggctgaggagaaggccgccggcgatatgttcaaaaacacgtt 17993023
Query: 243 ccagagcggcttcctctccattctctacagcattggcagcaagcccctgcaaatctggga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17993022 ccagagcggcttcctctccattctctacagcattggcagcaagcccctgcaaatctggga 17992963
Query: 303 caaaaaggt 311
|||||||||
Sbjct: 17992962 caaaaaggt 17992954
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 500 aggtactagatgacaagaatgtgcgtcgacggtttcgggcaagtaactaccagagcacca 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17980201 aggtactagatgacaagaatgtgcgtcgacggtttcgggcaagtaactaccagagcacca 17980142
Query: 560 cccgggtcaaacccttcatctgtaccatgcccatgcggctagatgatggctggaaccaaa 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17980141 cccgggtcaaacccttcatctgtaccatgcccatgcggctagatgatggctggaaccaaa 17980082
Query: 620 ttcagttcaacctgtcagactttactcgtcgggcatatggcacaaattacattgagaccc 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17980081 ttcagttcaacctgtcagactttactcgtcgggcatatggcacaaattacattgagaccc 17980022
Query: 680 taagggtgcag 690
|||||||||||
Sbjct: 17980021 taagggtgcag 17980011
Score = 361 bits (182), Expect = 5e-97
Identities = 192/194 (98%), Gaps = 1/194 (0%)
Strand = Plus / Minus
Query: 800 agcaataactgaaatgcaactaaaggaatagatcctggatatgactcttagtttaaagga 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17979023 agcaataactgaaatgcaactaaaggaatagatcctggatatgactcttagtttaaagga 17978964
Query: 860 aaactatctggaggacaatgcaaaaaacatatatttatcttagttcaccgtactgtggtt 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17978963 aaactatctggaggacaatgcaaaaaacatatatttatcttagttcaccgtactgtggtt 17978904
Query: 920 cttttatc-tctacttcgcatcccttgtcatggacaccagtgaccgtgccgtaatgcaat 978
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 17978903 cttttatcttctacttcgcatcccttgtcatggacaccagtgaccgtgccgtaatgccat 17978844
Query: 979 aattgcattgtaag 992
||||||||||||||
Sbjct: 17978843 aattgcattgtaag 17978830
Score = 234 bits (118), Expect = 7e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 387 cagcaccacatatatcacatgtcctgcagacccaaagaaaacattgggaattaaacttcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17981688 cagcaccacatatatcacatgtcctgcagacccaaagaaaacattgggaattaaacttcc 17981629
Query: 447 cttccttgtcatgattatcaaaaacctgaagaaatattttacctttgaagtgcaggta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17981628 cttccttgtcatgattatcaaaaacctgaagaaatattttacctttgaagtgcaggta 17981571
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 688 cagatccatgcaaactgtcgcatccgacgggtttacttctcagacagactctactcagaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17979660 cagatccatgcaaactgtcgcatccgacgggtttacttctcagacagactctactcagaa 17979601
Query: 748 gacgaactgccagcagagttcaaactgtatcttccagttcagaacaaagctaag 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17979600 gacgaactgccagcagagttcaaactgtatcttccagttcagaacaaagctaag 17979547
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 308 aggtgaggaatggccacatcaaaagaatcactgataatgacatccagtccctggtgctag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17982465 aggtgaggaatggccacatcaaaagaatcactgataatgacatccagtccctggtgctag 17982406
Query: 368 agattgaaggaacaaacgtcag 389
||||||||||||||||||||||
Sbjct: 17982405 agattgaaggaacaaacgtcag 17982384
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,417,210
Number of extensions: 156
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 6
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)