Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013813
(1079 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098510.1| interferon regulatory factor 7 [Bos taurus]. 279 3e-75
Alignment gi|NP_001025016.1| interferon regulatory factor 3 [Bos taurus]. 97 3e-20
Alignment gi|NP_001077238.1| interferon regulatory factor 8 [Bos taurus]. 88 1e-17
Alignment gi|NP_001193091.1| interferon regulatory factor 4 [Bos taurus]. 87 2e-17
Alignment gi|XP_002697657.1| PREDICTED: interferon regulatory factor 4-li... 87 2e-17
Alignment gi|NP_001019677.1| interferon regulatory factor 9 [Bos taurus]. 87 3e-17
Alignment gi|XP_002692330.1| PREDICTED: interferon regulatory factor 10-l... 84 2e-16
Alignment gi|XP_875833.2| PREDICTED: interferon regulatory factor 10-like... 84 2e-16
Alignment gi|NP_001070402.1| interferon regulatory factor 6 [Bos taurus]. 82 1e-15
Alignment gi|NP_001030542.1| interferon regulatory factor 5 [Bos taurus]. 79 9e-15
>ref|NP_001098510.1| interferon regulatory factor 7 [Bos taurus].
Length = 480
Score = 279 bits (714), Expect = 3e-75
Identities = 145/216 (67%), Positives = 154/216 (71%)
Frame = +1
Query: 421 MAAAPDRGCPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIF 600
MA APDRG PRVLFGDWLLGEVSSGRY GLRWLD ARTRFRVPWKHFARKDLGE+DSRIF
Sbjct: 1 MAEAPDRGTPRVLFGDWLLGEVSSGRYEGLRWLDAARTRFRVPWKHFARKDLGEADSRIF 60
Query: 601 KAWAVARGRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKV 780
KAWAVARGRWP RS GA PIPE ALRASWKTNFRCAL ST+RFVML+DNSGDPTDPHKV
Sbjct: 61 KAWAVARGRWPLRSGGGAPPIPESALRASWKTNFRCALRSTQRFVMLEDNSGDPTDPHKV 120
Query: 781 YMINPELXXXXXXXXXXXXXXALEDXXXXXXXXXXXXXXAHTGERLRHELARPSPETLHP 960
Y I+ E ALED + TGE L H L +PE P
Sbjct: 121 YKISSEPGCPEGLGFDQGEDEALEDAPPARGGLLGPCLASDTGESLGHRL---NPEPCPP 177
Query: 961 SPAGDGGELLXSALQQSCMEEHLLEAAWGVDLTPPE 1068
S AGD +LL ALQQSC+E+HLL DLTPPE
Sbjct: 178 SLAGDARDLLIQALQQSCLEDHLL------DLTPPE 207
>ref|NP_001025016.1| interferon regulatory factor 3 [Bos taurus].
Length = 417
Score = 96.7 bits (239), Expect = 3e-20
Identities = 47/112 (41%), Positives = 65/112 (58%)
Frame = +1
Query: 448 PRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIFKAWAVARGR 627
PR+L WL+ ++ G G+ WL E+RTRFR+PWKH R+D + D IF+AWAVA G
Sbjct: 6 PRIL--PWLISQLDRGELEGVAWLGESRTRFRIPWKHGLRQDAQQEDFGIFQAWAVASGA 63
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKVY 783
+ P + P +WK NFR AL+ + +D+S D DPHK+Y
Sbjct: 64 YTPGKDKPDLP--------TWKRNFRSALNRKEVLRLAEDHSKDSQDPHKIY 107
>ref|NP_001077238.1| interferon regulatory factor 8 [Bos taurus].
Length = 426
Score = 87.8 bits (216), Expect = 1e-17
Identities = 46/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Frame = +1
Query: 469 WLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRSS 645
WL+ ++ S Y GL W ++ +T FR+PWKH ++D E D+ IFKAWAV +G++ +
Sbjct: 13 WLIEQIDSTMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF--KEG 70
Query: 646 EGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINPE 798
+ A+P A+WKT RCAL+ + F + D S D ++P+KVY I PE
Sbjct: 71 DKAEP-------ATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPE 115
>ref|NP_001193091.1| interferon regulatory factor 4 [Bos taurus].
Length = 451
Score = 87.4 bits (215), Expect = 2e-17
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Frame = +1
Query: 469 WLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRSS 645
WL+ ++ SG+Y GL W +E ++ FR+PWKH ++D E D+ +FKAWA+ +G++
Sbjct: 27 WLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKF----R 82
Query: 646 EGA-QPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINPE 798
EG +P P +WKT RCAL+ + F L + S D +DP+KVY I PE
Sbjct: 83 EGIDKPDP-----PTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPE 130
>ref|XP_002697657.1| PREDICTED: interferon regulatory factor 4-like [Bos taurus].
Length = 451
Score = 87.4 bits (215), Expect = 2e-17
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Frame = +1
Query: 469 WLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRSS 645
WL+ ++ SG+Y GL W +E ++ FR+PWKH ++D E D+ +FKAWA+ +G++
Sbjct: 27 WLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKF----R 82
Query: 646 EGA-QPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINPE 798
EG +P P +WKT RCAL+ + F L + S D +DP+KVY I PE
Sbjct: 83 EGIDKPDP-----PTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPE 130
>ref|NP_001019677.1| interferon regulatory factor 9 [Bos taurus].
Length = 474
Score = 86.7 bits (213), Expect = 3e-17
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Frame = +1
Query: 445 CPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGE-SDSRIFKAWAVAR 621
C R L +W++ +V SG++ G+ W D A+T FR+PWKH ++D E D+ FKAWA+ +
Sbjct: 43 CTRKL-RNWVVEQVESGQFPGVCWEDAAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIYK 101
Query: 622 GRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQD-NSGDPTDPHKVYMINP 795
G++ SSEG A WKT RCAL+ + F + + D +P+KVY + P
Sbjct: 102 GKYREGSSEGP---------AIWKTRLRCALNKSCEFEEVPEIGHRDGAEPYKVYRLLP 151
>ref|XP_002692330.1| PREDICTED: interferon regulatory factor 10-like [Bos taurus].
Length = 460
Score = 84.0 bits (206), Expect = 2e-16
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 466 DWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRS 642
+WL+ ++ SGRYAGLRW D +T FR+PWKH A++ D+ +F+AWA+ +G++
Sbjct: 31 EWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAKQGYQVRQDAALFRAWAIYKGKY---- 86
Query: 643 SEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMI 789
EG ++WKT RCAL+ + F + + S D ++P+KVY +
Sbjct: 87 LEGIDKEDP----STWKTRLRCALNKSADFCEVPERSQLDISNPYKVYRL 132
>ref|XP_875833.2| PREDICTED: interferon regulatory factor 10-like [Bos taurus].
Length = 460
Score = 84.0 bits (206), Expect = 2e-16
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 466 DWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRS 642
+WL+ ++ SGRYAGLRW D +T FR+PWKH A++ D+ +F+AWA+ +G++
Sbjct: 31 EWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAKQGYQVRQDAALFRAWAIYKGKY---- 86
Query: 643 SEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMI 789
EG ++WKT RCAL+ + F + + S D ++P+KVY +
Sbjct: 87 LEGIDKEDP----STWKTRLRCALNKSADFCEVPERSQLDISNPYKVYRL 132
>ref|NP_001070402.1| interferon regulatory factor 6 [Bos taurus].
Length = 467
Score = 81.6 bits (200), Expect = 1e-15
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFAR-KDLGESDSRIFKAWAVARGR 627
RV WL+ +V SG Y GL WL RF++PWKH R E ++ IFKAWAV G+
Sbjct: 7 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 66
Query: 628 WPPRSSEGA-QPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGD-PTDPHKVYMI 789
+ EG P P A WK RCAL+ +R F ++ D + + P +P K+Y +
Sbjct: 67 Y----QEGVDDPDP-----AKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQV 113
>ref|NP_001030542.1| interferon regulatory factor 5 [Bos taurus].
Length = 499
Score = 78.6 bits (192), Expect = 9e-15
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
RV WL+ +V+S +Y GL+W++ + F +PW+H R + D+ IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSHDGDNTIFKAWAKETGK 73
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGD-PTDPHKVYMI 789
+ +EG + A A WK N RCAL+ +R F ++ D D P P+KVY +
Sbjct: 74 Y----TEGV----DEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKVYEV 120
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,492,310
Number of extensions: 1346681
Number of successful extensions: 6444
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6410
Number of HSP's successfully gapped: 13
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013813
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013813
(1079 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852252.1| PREDICTED: similar to Interferon regulatory fac... 88 1e-17
Alignment gi|XP_546793.2| PREDICTED: similar to interferon regulatory fac... 87 3e-17
Alignment gi|XP_849977.1| PREDICTED: similar to interferon-stimulated tra... 86 6e-17
Alignment gi|XP_860301.1| PREDICTED: similar to interferon-stimulated tra... 86 6e-17
Alignment gi|XP_860263.1| PREDICTED: similar to interferon-stimulated tra... 86 6e-17
Alignment gi|XP_537138.2| PREDICTED: similar to Interferon regulatory fac... 86 8e-17
Alignment gi|XP_539383.2| PREDICTED: similar to interferon regulatory fac... 85 1e-16
Alignment gi|XP_532847.2| PREDICTED: similar to interferon regulatory fac... 62 7e-10
Alignment gi|XP_857541.1| PREDICTED: similar to Interferon regulatory fac... 62 7e-10
Alignment gi|XP_857502.1| PREDICTED: similar to interferon regulatory fac... 62 7e-10
>ref|XP_852252.1| PREDICTED: similar to Interferon regulatory factor 4 (IRF-4)
(Lymphocyte specific interferon regulatory factor)
(LSIRF) (NF-EM5) (Multiple myeloma oncogene 1) [Canis
familiaris].
Length = 328
Score = 88.2 bits (217), Expect = 1e-17
Identities = 43/110 (39%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 466 DWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDL-GESDSRIFKAWAVARGRWPPRS 642
DWL+ ++ SGRYAGLRW D +T FR+PWKH A++ + D+ +F+AWA+ +G+
Sbjct: 12 DWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAQQGYRAQQDAALFRAWAIYKGKHLEGI 71
Query: 643 SEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMI 789
+ P +WKT RCAL+ + F +++ S D ++P+KVY I
Sbjct: 72 DKEDPP--------TWKTRLRCALNKSADFCEVRERSQLDVSNPYKVYRI 113
>ref|XP_546793.2| PREDICTED: similar to interferon regulatory factor 8 [Canis
familiaris].
Length = 426
Score = 87.0 bits (214), Expect = 3e-17
Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Frame = +1
Query: 469 WLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRSS 645
WL+ ++ S Y GL W ++ ++ FR+PWKH ++D E D+ IFKAWAV +G++ +
Sbjct: 13 WLIEQIDSNMYPGLIWENDEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF--KEG 70
Query: 646 EGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINPE 798
+ A+P A+WKT RCAL+ + F + D S D ++P+KVY I PE
Sbjct: 71 DKAEP-------ATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPE 115
>ref|XP_849977.1| PREDICTED: similar to interferon-stimulated transcription factor 3,
gamma 48kDa isoform 2 [Canis familiaris].
Length = 424
Score = 85.9 bits (211), Expect = 6e-17
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +1
Query: 466 DWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGE-SDSRIFKAWAVARGRWPPRS 642
+W++ +V SG++ G+ W D A+T FR+PWKH ++D E D+ FKAWA+ +G++
Sbjct: 14 NWVVEQVESGQFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYKEGD 73
Query: 643 SEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNS-GDPTDPHKVYMINP 795
EG A WKT RCAL+ + F + +N D +P+KVY + P
Sbjct: 74 MEGP---------AIWKTRLRCALNKSPEFEEVPENGHRDGAEPYKVYRLLP 116
>ref|XP_860301.1| PREDICTED: similar to interferon-stimulated transcription factor 3,
gamma 48kDa isoform 4 [Canis familiaris].
Length = 217
Score = 85.9 bits (211), Expect = 6e-17
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +1
Query: 466 DWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGE-SDSRIFKAWAVARGRWPPRS 642
+W++ +V SG++ G+ W D A+T FR+PWKH ++D E D+ FKAWA+ +G++
Sbjct: 14 NWVVEQVESGQFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYKEGD 73
Query: 643 SEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNS-GDPTDPHKVYMINP 795
EG A WKT RCAL+ + F + +N D +P+KVY + P
Sbjct: 74 MEGP---------AIWKTRLRCALNKSPEFEEVPENGHRDGAEPYKVYRLLP 116
>ref|XP_860263.1| PREDICTED: similar to interferon-stimulated transcription factor 3,
gamma 48kDa isoform 3 [Canis familiaris].
Length = 410
Score = 85.9 bits (211), Expect = 6e-17
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +1
Query: 466 DWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGE-SDSRIFKAWAVARGRWPPRS 642
+W++ +V SG++ G+ W D A+T FR+PWKH ++D E D+ FKAWA+ +G++
Sbjct: 14 NWVVEQVESGQFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYKEGD 73
Query: 643 SEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNS-GDPTDPHKVYMINP 795
EG A WKT RCAL+ + F + +N D +P+KVY + P
Sbjct: 74 MEGP---------AIWKTRLRCALNKSPEFEEVPENGHRDGAEPYKVYRLLP 116
>ref|XP_537138.2| PREDICTED: similar to Interferon regulatory factor 6 (IRF-6) [Canis
familiaris].
Length = 531
Score = 85.5 bits (210), Expect = 8e-17
Identities = 53/138 (38%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Frame = +1
Query: 385 PVSPRPVLAEGAMAAAPDRGCPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFA 564
P SP+ G MA P R V WL+ +V SG Y GL WL RF++PWKH
Sbjct: 58 PSSPQHRQERGIMALHPRR----VRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHAT 113
Query: 565 R-KDLGESDSRIFKAWAVARGRWPPRSSEGA-QPIPEGALRASWKTNFRCALHSTRRFVM 738
R E ++ IFKAWAV G++ EG P P A WK RCAL+ +R F +
Sbjct: 114 RHSPQQEEENTIFKAWAVETGKY----QEGVDDPDP-----AKWKAQLRCALNKSREFNL 164
Query: 739 LQDNSGD-PTDPHKVYMI 789
+ D + + P +P K+Y +
Sbjct: 165 MYDGTKEVPMNPVKIYQV 182
>ref|XP_539383.2| PREDICTED: similar to interferon regulatory factor 5 isoform a
[Canis familiaris].
Length = 569
Score = 84.7 bits (208), Expect = 1e-16
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 2/150 (1%)
Frame = +1
Query: 346 PAPVVRALAAEAKPVSPRPVLAEGAMAAAPDRGCPRVLFGDWLLGEVSSGRYAGLRWLDE 525
P RA A E P P LA A RV WL+ +V+S +Y GL+W++
Sbjct: 44 PGAGERAGALEVAPRDPPDPLAMNQPAPRAPPPPRRVRLKPWLVAQVNSCQYPGLQWVNG 103
Query: 526 ARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRSSEGAQPIPEGALRASWKTNF 702
R F +PW+H R E D+ IFKAWA G++ +EG + A A WK N
Sbjct: 104 ERKFFCIPWRHATRHGPSQEGDNTIFKAWAKETGKY----TEGV----DEADPAKWKANL 155
Query: 703 RCALHSTRRFVMLQDNSGD-PTDPHKVYMI 789
RCAL+ +R F ++ D D P P+K+Y +
Sbjct: 156 RCALNKSRDFRLIYDGPRDMPPQPYKIYEV 185
>ref|XP_532847.2| PREDICTED: similar to interferon regulatory factor 2 isoform 1
[Canis familiaris].
Length = 347
Score = 62.4 bits (150), Expect = 7e-10
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
R+ WL +++S GL+WL++ + F++PW H AR E D+ +F+ WA+ G+
Sbjct: 5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 64
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNS 753
P +P P+ +WK NFRCA++S ++D S
Sbjct: 65 HQPGVD---KPDPK-----TWKANFRCAMNSLPDIEEVKDKS 98
>ref|XP_857541.1| PREDICTED: similar to Interferon regulatory factor 2 (IRF-2)
isoform 5 [Canis familiaris].
Length = 294
Score = 62.4 bits (150), Expect = 7e-10
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
R+ WL +++S GL+WL++ + F++PW H AR E D+ +F+ WA+ G+
Sbjct: 5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 64
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNS 753
P +P P+ +WK NFRCA++S ++D S
Sbjct: 65 HQPGVD---KPDPK-----TWKANFRCAMNSLPDIEEVKDKS 98
>ref|XP_857502.1| PREDICTED: similar to interferon regulatory factor 2 isoform 4
[Canis familiaris].
Length = 351
Score = 62.4 bits (150), Expect = 7e-10
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
R+ WL +++S GL+WL++ + F++PW H AR E D+ +F+ WA+ G+
Sbjct: 5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 64
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNS 753
P +P P+ +WK NFRCA++S ++D S
Sbjct: 65 HQPGVD---KPDPK-----TWKANFRCAMNSLPDIEEVKDKS 98
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,138,482
Number of extensions: 1360130
Number of successful extensions: 6625
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6586
Number of HSP's successfully gapped: 13
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013813
(1079 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090897.1| interferon regulatory factor 7 [Sus scrofa]. 375 e-104
Alignment gi|NP_998935.1| interferon regulatory factor 3 [Sus scrofa]. 99 3e-21
Alignment gi|NP_001072138.1| interferon regulatory factor 9 [Sus scrofa]. 84 1e-16
Alignment gi|NP_999443.1| interferon regulatory factor 6 [Sus scrofa]. 82 7e-16
Alignment gi|XP_003134757.2| PREDICTED: interferon regulatory factor 5-li... 79 4e-15
Alignment gi|XP_003134732.1| PREDICTED: interferon regulatory factor 5-li... 79 4e-15
Alignment gi|XP_003134731.1| PREDICTED: interferon regulatory factor 5-li... 79 4e-15
Alignment gi|XP_003133382.2| PREDICTED: interferon regulatory factor 2-li... 62 4e-10
Alignment gi|NP_001090882.1| interferon regulatory factor 1 [Sus scrofa]. 62 4e-10
>ref|NP_001090897.1| interferon regulatory factor 7 [Sus scrofa].
Length = 487
Score = 375 bits (962), Expect = e-104
Identities = 182/217 (83%), Positives = 184/217 (84%)
Frame = +1
Query: 421 MAAAPDRGCPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIF 600
MAAAPDRGCPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIF
Sbjct: 1 MAAAPDRGCPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIF 60
Query: 601 KAWAVARGRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKV 780
KAWAVARGRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKV
Sbjct: 61 KAWAVARGRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKV 120
Query: 781 YMINPELXXXXXXXXXXXXXXALEDXXXXXXXXXXXXXXAHTGERLRHELARPSPETLHP 960
YMINPEL ALED AHTGERLRHELARPSPE P
Sbjct: 121 YMINPELGCGEGPGFNPGEEEALEDAPPPRGELPGPRLAAHTGERLRHELARPSPEPCTP 180
Query: 961 SPAGDGGELLXSALQQSCMEEHLLEAAWGVDLTPPEV 1071
SPAGDGG+LL ALQQSCME+HLLEAAWGVDLTPPEV
Sbjct: 181 SPAGDGGDLLLQALQQSCMEDHLLEAAWGVDLTPPEV 217
>ref|NP_998935.1| interferon regulatory factor 3 [Sus scrofa].
Length = 419
Score = 99.4 bits (246), Expect = 3e-21
Identities = 47/112 (41%), Positives = 66/112 (58%)
Frame = +1
Query: 448 PRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIFKAWAVARGR 627
PR+L WL+ +++ G+ G+ WLDE TRFR+PWKH R+D + D IF+AWA A G
Sbjct: 6 PRIL--PWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEASGA 63
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKVY 783
+ P + P +WK NFR AL+ + +D+S DP DPHK+Y
Sbjct: 64 YTPGKDKPDLP--------TWKRNFRSALNRKEALRLAEDHSKDPHDPHKIY 107
>ref|NP_001072138.1| interferon regulatory factor 9 [Sus scrofa].
Length = 411
Score = 84.0 bits (206), Expect = 1e-16
Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Frame = +1
Query: 445 CPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGE-SDSRIFKAWAVAR 621
C R L +W++ +V SG++ G+ W D+A+T R+PWKH ++D E D+ FKAWA+ +
Sbjct: 8 CTRKL-RNWVVEQVESGQFPGVCWDDDAKTMSRIPWKHAGKQDFREDQDAAFFKAWAIFK 66
Query: 622 GRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNS-GDPTDPHKVYMINP 795
G++ SEG A WKT RCAL+ + F + +N +P+KVY + P
Sbjct: 67 GKYKEGDSEGP---------AIWKTRLRCALNKSTEFEEVPENGHRGGAEPYKVYRLLP 116
>ref|NP_999443.1| interferon regulatory factor 6 [Sus scrofa].
Length = 467
Score = 81.6 bits (200), Expect = 7e-16
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFAR-KDLGESDSRIFKAWAVARGR 627
RV WL+ +V SG Y GL WL RF++PWKH R E ++ IFKAWAV G+
Sbjct: 7 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 66
Query: 628 WPPRSSEGA-QPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGD-PTDPHKVYMI 789
+ EG P P A WK RCAL+ +R F ++ D + + P +P K+Y +
Sbjct: 67 Y----QEGVDDPDP-----AKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQV 113
>ref|XP_003134757.2| PREDICTED: interferon regulatory factor 5-like, partial [Sus
scrofa].
Length = 366
Score = 79.0 bits (193), Expect = 4e-15
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
RV WL+ +V+S +Y GL+W++ R F +PW+H R + D+ IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGD-PTDPHKVYMI 789
+ +EG + A A WK N RCAL+ +R F ++ D D P P+K+Y +
Sbjct: 74 Y----TEGV----DEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>ref|XP_003134732.1| PREDICTED: interferon regulatory factor 5-like isoform 2 [Sus
scrofa].
Length = 487
Score = 79.0 bits (193), Expect = 4e-15
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
RV WL+ +V+S +Y GL+W++ R F +PW+H R + D+ IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGD-PTDPHKVYMI 789
+ +EG + A A WK N RCAL+ +R F ++ D D P P+K+Y +
Sbjct: 74 Y----TEGV----DEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>ref|XP_003134731.1| PREDICTED: interferon regulatory factor 5-like isoform 1 [Sus
scrofa].
Length = 503
Score = 79.0 bits (193), Expect = 4e-15
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
RV WL+ +V+S +Y GL+W++ R F +PW+H R + D+ IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGD-PTDPHKVYMI 789
+ +EG + A A WK N RCAL+ +R F ++ D D P P+K+Y +
Sbjct: 74 Y----TEGV----DEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>ref|XP_003133382.2| PREDICTED: interferon regulatory factor 2-like [Sus scrofa].
Length = 236
Score = 62.4 bits (150), Expect = 4e-10
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
R+ WL +++S GL+WL++ + F++PW H AR E D+ +F+ WA+ G+
Sbjct: 5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 64
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNS 753
P +P P+ +WK NFRCA++S ++D S
Sbjct: 65 HQPGVD---KPDPK-----TWKANFRCAMNSLPDIEEVKDKS 98
>ref|NP_001090882.1| interferon regulatory factor 1 [Sus scrofa].
Length = 322
Score = 62.4 bits (150), Expect = 4e-10
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
R+ WL +++S + GL W+++ F++PWKH A+ D+ +F++WA+ GR
Sbjct: 5 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGR 64
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDP-TDPHKVYMINPEL 801
+ E P P+ +WK NFRCA++S ++D S + + +VY + P L
Sbjct: 65 YKAGEKE---PDPK-----TWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPL 115
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,392,884
Number of extensions: 902559
Number of successful extensions: 4059
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4040
Number of HSP's successfully gapped: 9
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013813
(1079 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058546.1| interferon regulatory factor 7 [Mus musculus]. 193 2e-49
Alignment gi|NP_058545.1| interferon regulatory factor 3 [Mus musculus]. 97 2e-20
Alignment gi|NP_032346.1| interferon regulatory factor 8 [Mus musculus]. 89 8e-18
Alignment gi|NP_038702.1| interferon regulatory factor 4 [Mus musculus]. 87 2e-17
Alignment gi|NP_001152889.1| interferon regulatory factor 9 isoform 1 [Mu... 82 6e-16
Alignment gi|NP_058547.2| interferon regulatory factor 6 [Mus musculus]. 82 9e-16
Alignment gi|NP_036187.1| interferon regulatory factor 5 [Mus musculus]. 78 1e-14
Alignment gi|NP_001152890.1| interferon regulatory factor 9 isoform 2 [Mu... 77 2e-14
Alignment gi|NP_032420.1| interferon regulatory factor 9 isoform 3 [Mus m... 77 2e-14
Alignment gi|NP_032417.3| interferon regulatory factor 2 [Mus musculus]. 62 6e-10
>ref|NP_058546.1| interferon regulatory factor 7 [Mus musculus].
Length = 457
Score = 193 bits (490), Expect = 2e-49
Identities = 108/213 (50%), Positives = 125/213 (58%), Gaps = 3/213 (1%)
Frame = +1
Query: 439 RGCPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIFKAWAVA 618
RG RVLFGDWLLGEVSSG+Y GL+WL+EART FRVPWKHF R+DL E D++IFKAWAVA
Sbjct: 5 RGVQRVLFGDWLLGEVSSGQYEGLQWLNEARTVFRVPWKHFGRRDLDEEDAQIFKAWAVA 64
Query: 619 RGRWPPRSSEGAQPIPEGA---LRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKVYMI 789
RGRWPP P E A R WKTNFRCALHST RF++ QDNSGDP DPHKVY +
Sbjct: 65 RGRWPPSGVNLPPPEAEAAERRERRGWKTNFRCALHSTGRFILRQDNSGDPVDPHKVYEL 124
Query: 790 NPELXXXXXXXXXXXXXXALEDXXXXXXXXXXXXXXAHTGERLRHELARPSPETLHPSPA 969
+ EL A E+ G L E A +T P +
Sbjct: 125 SREL--------GSTVGPATENREEVSLSNALPTQGVSPGSFLARENA--GLQTPSPLLS 174
Query: 970 GDGGELLXSALQQSCMEEHLLEAAWGVDLTPPE 1068
D G+LL LQ S H+LE+ G D PP+
Sbjct: 175 SDAGDLLLQVLQYS----HILESESGADPVPPQ 203
>ref|NP_058545.1| interferon regulatory factor 3 [Mus musculus].
Length = 419
Score = 97.4 bits (241), Expect = 2e-20
Identities = 50/112 (44%), Positives = 68/112 (60%)
Frame = +1
Query: 448 PRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIFKAWAVARGR 627
PR+L WL+ ++ G+ G+ WLDE+RTRFR+PWKH R+D +D IF+AWA A G
Sbjct: 6 PRIL--PWLVSQLDLGQLEGVAWLDESRTRFRIPWKHGLRQDAQMADFGIFQAWAEASGA 63
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKVY 783
+ P + P+ ++WK NFR AL+ + DNS DP DPHKVY
Sbjct: 64 YTPGKDK-----PD---VSTWKRNFRSALNRKEVLRLAADNSKDPYDPHKVY 107
>ref|NP_032346.1| interferon regulatory factor 8 [Mus musculus].
Length = 424
Score = 88.6 bits (218), Expect = 8e-18
Identities = 46/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Frame = +1
Query: 469 WLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRSS 645
WL+ ++ S Y GL W ++ +T FR+PWKH ++D E D+ IFKAWAV +G++ +
Sbjct: 13 WLIEQIDSSMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF--KEG 70
Query: 646 EGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINPE 798
+ A+P A+WKT RCAL+ + F + D S D ++P+KVY I PE
Sbjct: 71 DKAEP-------ATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPE 115
>ref|NP_038702.1| interferon regulatory factor 4 [Mus musculus].
Length = 450
Score = 87.4 bits (215), Expect = 2e-17
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Frame = +1
Query: 469 WLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRSS 645
WL+ ++ SG+Y GL W +E ++ FR+PWKH ++D E D+ +FKAWA+ +G++
Sbjct: 27 WLIDQIDSGKYPGLVWENEEKSVFRIPWKHAGKQDYNREEDAALFKAWALFKGKF----R 82
Query: 646 EGA-QPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINPE 798
EG +P P +WKT RCAL+ + F L + S D +DP+KVY I PE
Sbjct: 83 EGIDKPDP-----PTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPE 130
>ref|NP_001152889.1| interferon regulatory factor 9 isoform 1 [Mus musculus].
Length = 465
Score = 82.4 bits (202), Expect = 6e-16
Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Frame = +1
Query: 370 AAEAKPVSPRPVLAEGAMAAAP--DRG------------CPRVLFGDWLLGEVSSGRYAG 507
AA+A P+S P L A P RG C R L W++ +V SG + G
Sbjct: 35 AAQALPISSAPPLPPAAAPPTPLAKRGMVRRRMASGKVRCTRKL-RSWIVEQVESGHFPG 93
Query: 508 LRWLDEARTRFRVPWKHFARKDLGE-SDSRIFKAWAVARGRWPPRSSEGAQPIPEGALRA 684
+ W D A+T FR+PWKH ++D E D+ IFKAWA+ + + + + P A
Sbjct: 94 VCWDDAAKTMFRIPWKHAGKQDFREDQDAAIFKAWALFKEK--HKDGDIGHP-------A 144
Query: 685 SWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINP 795
WKT RCAL+ + F + + D +P+KVY I P
Sbjct: 145 VWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILP 182
>ref|NP_058547.2| interferon regulatory factor 6 [Mus musculus].
Length = 467
Score = 81.6 bits (200), Expect = 9e-16
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFAR-KDLGESDSRIFKAWAVARGR 627
RV WL+ +V SG Y GL WL RF++PWKH R E ++ IFKAWAV G+
Sbjct: 7 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 66
Query: 628 WPPRSSEGA-QPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGD-PTDPHKVYMI 789
+ EG P P A WK RCAL+ +R F ++ D + + P +P K+Y +
Sbjct: 67 Y----QEGVDDPDP-----AKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQV 113
>ref|NP_036187.1| interferon regulatory factor 5 [Mus musculus].
Length = 497
Score = 77.8 bits (190), Expect = 1e-14
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
RV WL+ +V+S +Y GL+W++ + F +PW+H R + D+ IFKAWA G+
Sbjct: 14 RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSQDGDNTIFKAWAKETGK 73
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGD-PTDPHKVYMI 789
+ +EG + A A WK N RCAL+ +R F + D D P P+K+Y +
Sbjct: 74 Y----TEGV----DEADPAKWKANLRCALNKSRDFQLFYDGPRDMPPQPYKIYEV 120
>ref|NP_001152890.1| interferon regulatory factor 9 isoform 2 [Mus musculus].
Length = 417
Score = 77.4 bits (189), Expect = 2e-14
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Frame = +1
Query: 445 CPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGE-SDSRIFKAWAVAR 621
C R L W++ +V SG + G+ W D A+T FR+PWKH ++D E D+ IFKAWA+ +
Sbjct: 26 CTRKL-RSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIFKAWALFK 84
Query: 622 GRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINP 795
+ + + P A WKT RCAL+ + F + + D +P+KVY I P
Sbjct: 85 EK--HKDGDIGHP-------AVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILP 134
>ref|NP_032420.1| interferon regulatory factor 9 isoform 3 [Mus musculus].
Length = 399
Score = 77.4 bits (189), Expect = 2e-14
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Frame = +1
Query: 445 CPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGE-SDSRIFKAWAVAR 621
C R L W++ +V SG + G+ W D A+T FR+PWKH ++D E D+ IFKAWA+ +
Sbjct: 8 CTRKL-RSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIFKAWALFK 66
Query: 622 GRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINP 795
+ + + P A WKT RCAL+ + F + + D +P+KVY I P
Sbjct: 67 EK--HKDGDIGHP-------AVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILP 116
>ref|NP_032417.3| interferon regulatory factor 2 [Mus musculus].
Length = 349
Score = 62.4 bits (150), Expect = 6e-10
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +1
Query: 451 RVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGR 627
R+ WL +++S GL+WL++ + F++PW H AR E D+ +F+ WA+ G+
Sbjct: 5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 64
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNS 753
P +P P+ +WK NFRCA++S ++D S
Sbjct: 65 HQPGID---KPDPK-----TWKANFRCAMNSLPDIEEVKDRS 98
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,981,526
Number of extensions: 1080879
Number of successful extensions: 4715
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4683
Number of HSP's successfully gapped: 13
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013813
(1079 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001563.2| interferon regulatory factor 7 isoform a [Homo ... 237 2e-62
Alignment gi|NP_004020.1| interferon regulatory factor 7 isoform b [Homo ... 237 2e-62
Alignment gi|NP_004022.2| interferon regulatory factor 7 isoform d [Homo ... 233 2e-61
Alignment gi|NP_001562.1| interferon regulatory factor 3 isoform 1 [Homo ... 94 2e-19
Alignment gi|NP_001184053.1| interferon regulatory factor 3 isoform 4 [Ho... 94 2e-19
Alignment gi|NP_001184051.1| interferon regulatory factor 3 isoform 2 [Ho... 94 2e-19
Alignment gi|NP_002154.1| interferon regulatory factor 8 [Homo sapiens]. 88 1e-17
Alignment gi|NP_001182215.1| interferon regulatory factor 4 isoform 2 [Ho... 87 2e-17
Alignment gi|NP_002451.2| interferon regulatory factor 4 isoform 1 [Homo ... 87 2e-17
Alignment gi|NP_006075.3| interferon regulatory factor 9 [Homo sapiens]. 83 5e-16
>ref|NP_001563.2| interferon regulatory factor 7 isoform a [Homo sapiens].
Length = 503
Score = 237 bits (604), Expect = 2e-62
Identities = 127/216 (58%), Positives = 143/216 (66%), Gaps = 2/216 (0%)
Frame = +1
Query: 421 MAAAPDRGCPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIF 600
MA AP+R PRVLFG+WLLGE+SSG Y GL+WLDEART FRVPWKHFARKDL E+D+RIF
Sbjct: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF 60
Query: 601 KAWAVARGRWPPRSSEGAQPIPEG--ALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPH 774
KAWAVARGRWPP SS G P PE A RA WKTNFRCAL STRRFVML+DNSGDP DPH
Sbjct: 61 KAWAVARGRWPP-SSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPH 119
Query: 775 KVYMINPELXXXXXXXXXXXXXXALEDXXXXXXXXXXXXXXAHTGERLRHELARPSPETL 954
KVY ++ EL A AHT L+ P P
Sbjct: 120 KVYALSRELCWREGPGTDQTEAEA-PAAVPPPQGGPPGPFLAHTHAGLQ----APGP--- 171
Query: 955 HPSPAGDGGELLXSALQQSCMEEHLLEAAWGVDLTP 1062
P+PAGD G+LL A+QQSC+ +HLL A+WG D P
Sbjct: 172 LPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVP 207
>ref|NP_004020.1| interferon regulatory factor 7 isoform b [Homo sapiens].
Length = 474
Score = 237 bits (604), Expect = 2e-62
Identities = 127/216 (58%), Positives = 143/216 (66%), Gaps = 2/216 (0%)
Frame = +1
Query: 421 MAAAPDRGCPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIF 600
MA AP+R PRVLFG+WLLGE+SSG Y GL+WLDEART FRVPWKHFARKDL E+D+RIF
Sbjct: 1 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF 60
Query: 601 KAWAVARGRWPPRSSEGAQPIPEG--ALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPH 774
KAWAVARGRWPP SS G P PE A RA WKTNFRCAL STRRFVML+DNSGDP DPH
Sbjct: 61 KAWAVARGRWPP-SSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPH 119
Query: 775 KVYMINPELXXXXXXXXXXXXXXALEDXXXXXXXXXXXXXXAHTGERLRHELARPSPETL 954
KVY ++ EL A AHT L+ P P
Sbjct: 120 KVYALSRELCWREGPGTDQTEAEA-PAAVPPPQGGPPGPFLAHTHAGLQ----APGP--- 171
Query: 955 HPSPAGDGGELLXSALQQSCMEEHLLEAAWGVDLTP 1062
P+PAGD G+LL A+QQSC+ +HLL A+WG D P
Sbjct: 172 LPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVP 207
>ref|NP_004022.2| interferon regulatory factor 7 isoform d [Homo sapiens].
Length = 516
Score = 233 bits (595), Expect = 2e-61
Identities = 127/228 (55%), Positives = 143/228 (62%), Gaps = 2/228 (0%)
Frame = +1
Query: 385 PVSPRPVLAEGAMAAAPDRGCPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFA 564
PV RP + R PRVLFG+WLLGE+SSG Y GL+WLDEART FRVPWKHFA
Sbjct: 2 PVPERPAAGPDSPRPGTRRAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFA 61
Query: 565 RKDLGESDSRIFKAWAVARGRWPPRSSEGAQPIPEG--ALRASWKTNFRCALHSTRRFVM 738
RKDL E+D+RIFKAWAVARGRWPP SS G P PE A RA WKTNFRCAL STRRFVM
Sbjct: 62 RKDLSEADARIFKAWAVARGRWPP-SSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM 120
Query: 739 LQDNSGDPTDPHKVYMINPELXXXXXXXXXXXXXXALEDXXXXXXXXXXXXXXAHTGERL 918
L+DNSGDP DPHKVY ++ EL A AHT L
Sbjct: 121 LRDNSGDPADPHKVYALSRELCWREGPGTDQTEAEA-PAAVPPPQGGPPGPFLAHTHAGL 179
Query: 919 RHELARPSPETLHPSPAGDGGELLXSALQQSCMEEHLLEAAWGVDLTP 1062
+ P P P+PAGD G+LL A+QQSC+ +HLL A+WG D P
Sbjct: 180 Q----APGP---LPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVP 220
>ref|NP_001562.1| interferon regulatory factor 3 isoform 1 [Homo sapiens].
Length = 427
Score = 94.0 bits (232), Expect = 2e-19
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1
Query: 448 PRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIFKAWAVARGR 627
PR+L WL+ ++ G+ G+ W++++RTRFR+PWKH R+D + D IF+AWA A G
Sbjct: 6 PRIL--PWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGA 63
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKVY 783
+ P + P +WK NFR AL+ + +D S DP DPHK+Y
Sbjct: 64 YVPGRDKPDLP--------TWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIY 107
>ref|NP_001184053.1| interferon regulatory factor 3 isoform 4 [Homo sapiens].
Length = 300
Score = 94.0 bits (232), Expect = 2e-19
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1
Query: 448 PRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIFKAWAVARGR 627
PR+L WL+ ++ G+ G+ W++++RTRFR+PWKH R+D + D IF+AWA A G
Sbjct: 6 PRIL--PWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGA 63
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKVY 783
+ P + P +WK NFR AL+ + +D S DP DPHK+Y
Sbjct: 64 YVPGRDKPDLP--------TWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIY 107
>ref|NP_001184051.1| interferon regulatory factor 3 isoform 2 [Homo sapiens].
Length = 452
Score = 94.0 bits (232), Expect = 2e-19
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1
Query: 448 PRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGESDSRIFKAWAVARGR 627
PR+L WL+ ++ G+ G+ W++++RTRFR+PWKH R+D + D IF+AWA A G
Sbjct: 6 PRIL--PWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGA 63
Query: 628 WPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSGDPTDPHKVY 783
+ P + P +WK NFR AL+ + +D S DP DPHK+Y
Sbjct: 64 YVPGRDKPDLP--------TWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIY 107
>ref|NP_002154.1| interferon regulatory factor 8 [Homo sapiens].
Length = 426
Score = 88.2 bits (217), Expect = 1e-17
Identities = 46/112 (41%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Frame = +1
Query: 469 WLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRSS 645
WL+ ++ S Y GL W +E ++ FR+PWKH ++D E D+ IFKAWAV +G++ +
Sbjct: 13 WLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF--KEG 70
Query: 646 EGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINPE 798
+ A+P A+WKT RCAL+ + F + D S D ++P+KVY I PE
Sbjct: 71 DKAEP-------ATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPE 115
>ref|NP_001182215.1| interferon regulatory factor 4 isoform 2 [Homo sapiens].
Length = 450
Score = 87.4 bits (215), Expect = 2e-17
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Frame = +1
Query: 469 WLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRSS 645
WL+ ++ SG+Y GL W +E ++ FR+PWKH ++D E D+ +FKAWA+ +G++
Sbjct: 27 WLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKF----R 82
Query: 646 EGA-QPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINPE 798
EG +P P +WKT RCAL+ + F L + S D +DP+KVY I PE
Sbjct: 83 EGIDKPDP-----PTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPE 130
>ref|NP_002451.2| interferon regulatory factor 4 isoform 1 [Homo sapiens].
Length = 451
Score = 87.4 bits (215), Expect = 2e-17
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Frame = +1
Query: 469 WLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLG-ESDSRIFKAWAVARGRWPPRSS 645
WL+ ++ SG+Y GL W +E ++ FR+PWKH ++D E D+ +FKAWA+ +G++
Sbjct: 27 WLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKF----R 82
Query: 646 EGA-QPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINPE 798
EG +P P +WKT RCAL+ + F L + S D +DP+KVY I PE
Sbjct: 83 EGIDKPDP-----PTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPE 130
>ref|NP_006075.3| interferon regulatory factor 9 [Homo sapiens].
Length = 393
Score = 82.8 bits (203), Expect = 5e-16
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Frame = +1
Query: 445 CPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGE-SDSRIFKAWAVAR 621
C R L +W++ +V SG++ G+ W D A+T FR+PWKH ++D E D+ FKAWA+ +
Sbjct: 8 CTRKL-RNWVVEQVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFK 66
Query: 622 GRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNSG-DPTDPHKVYMINP 795
G++ + G A WKT RCAL+ + F + + D +P+KVY + P
Sbjct: 67 GKYKEGDTGGP---------AVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLP 116
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,060,667
Number of extensions: 1315578
Number of successful extensions: 6161
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 6122
Number of HSP's successfully gapped: 21
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013813
(1079 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 478 e-132
>Sscrofa_Chr02
|| Length = 162569375
Score = 478 bits (241), Expect = e-132
Identities = 244/245 (99%)
Strand = Plus / Plus
Query: 197 ccttggccaagactcacctgggcaacgtcgtggccagagccctcaacccccatctgtgac 256
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 299444 ccttggccaagactcacctgggcaacgtcgtggacagagccctcaacccccatctgtgac 299503
Query: 257 cccaacacccgtgacacctggccacactcactacctgtggtgtgtggtgacacacgcgca 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299504 cccaacacccgtgacacctggccacactcactacctgtggtgtgtggtgacacacgcgca 299563
Query: 317 gctctcctctcacctgcggttaacacctgcctgcccccgtggtcagagctctcgccgcgg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299564 gctctcctctcacctgcggttaacacctgcctgcccccgtggtcagagctctcgccgcgg 299623
Query: 377 aggccaagccagtgtctccacgcccagtccttgcagagggagcaatggccgcggctcctg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299624 aggccaagccagtgtctccacgcccagtccttgcagagggagcaatggccgcggctcctg 299683
Query: 437 acagg 441
|||||
Sbjct: 299684 acagg 299688
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 602 aggcctgggccgtggcccgcggcaggtggccgccccgcagcagcgaaggtgcgcagccga 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300010 aggcctgggccgtggcccgcggcaggtggccgccccgcagcagcgaaggtgcgcagccga 300069
Query: 662 tcccggagggtgccctccgcgcctcctggaaaaccaacttccgctgtgccctgcacagca 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300070 tcccggagggtgccctccgcgcctcctggaaaaccaacttccgctgtgccctgcacagca 300129
Query: 722 cgcggcgcttcgtgatgttgcaggacaactcaggggaccccactgaccctcataaggtgt 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300130 cgcggcgcttcgtgatgttgcaggacaactcaggggaccccactgaccctcataaggtgt 300189
Query: 782 atatgatcaaccccgagctggggtgcggag 811
||||||||||||||||||||||||||||||
Sbjct: 300190 atatgatcaaccccgagctggggtgcggag 300219
Score = 331 bits (167), Expect = 5e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 438 cagggggtgcccacgcgtgctcttcggagactggcttctgggcgaagtcagcagcggccg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299769 cagggggtgcccacgcgtgctcttcggagactggcttctgggcgaagtcagcagcggccg 299828
Query: 498 ttacgcagggctgcgatggctggatgaagccagaacacggttccgcgtgccctggaagca 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299829 ttacgcagggctgcgatggctggatgaagccagaacacggttccgcgtgccctggaagca 299888
Query: 558 cttcgcccgaaaggacctgggcgagtccgactcgcgcatctttaagg 604
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299889 cttcgcccgaaaggacctgggcgagtccgactcgcgcatctttaagg 299935
Score = 291 bits (147), Expect = 4e-76
Identities = 180/189 (95%), Gaps = 2/189 (1%)
Strand = Plus / Plus
Query: 870 gggtgagcttcccgggccgcgcctggcagcacatactggtgagaggctgaggcacgagct 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300642 gggtgagcttcccgggccgcgcctggcagcacatactggtgagaggctgaggcacgagct 300701
Query: 930 ggccaggccgagccctgaaaccctgcacccc-agcccagctggagatggtggggaactcc 988
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 300702 ggccaggccgagccctg-aaccctgcaccccaagcccagctggagatggtggggacctcc 300760
Query: 989 tgcnntcagctctgcagcagagctgcatggaggaacatctgctggaagctgcatggggcg 1048
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 300761 tgctccaggctctgcagcagagctgcatggaggaccatctgctggaagctgcatggggcg 300820
Query: 1049 tggatctga 1057
|||||||||
Sbjct: 300821 tggatctga 300829
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 810 agaaggcccaggcttcaacccgggggaagaggaggccctcgaggatgccccacccccaag 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300482 agaaggcccaggcttcaacccgggggaagaggaggccctcgaggatgccccacccccaag 300541
Query: 870 gg 871
||
Sbjct: 300542 gg 300543
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,390,533
Number of extensions: 96
Number of successful extensions: 96
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 5
Length of query: 1079
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1058
Effective length of database: 2,808,413,156
Effective search space: 2971301119048
Effective search space used: 2971301119048
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)