Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013818
(1006 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535867.2| PREDICTED: similar to Valacyclovir hydrolase pr... 474 e-134
>ref|XP_535867.2| PREDICTED: similar to Valacyclovir hydrolase precursor (VACVase)
(Biphenyl hydrolase-like protein) (Biphenyl
hydrolase-related protein) (Bph-rp) (Breast epithelial
mucin-associated antigen) (MCNAA) [Canis familiaris].
Length = 310
Score = 474 bits (1220), Expect = e-134
Identities = 220/255 (86%), Positives = 239/255 (93%)
Frame = +3
Query: 141 SSSVTSARVAVNGVHLHYLQTGEGEHAVLLLPGMLGSGETDFGPQIEALNKKLFTVVAWD 320
SSSVTS +VAVNGVHLHY QTGEGEHAVLLLPGMLGSG+TDFGPQI+ LNKKLFTVVAWD
Sbjct: 55 SSSVTSTKVAVNGVHLHYQQTGEGEHAVLLLPGMLGSGKTDFGPQIKNLNKKLFTVVAWD 114
Query: 321 PRGYGRSRPPDRDFPREFFERDAEDAIGLMKTLKFKKVSLLGWSDGGITALTAAARYPSY 500
PRGYG SRPPDRDFP +F ERDA+DA+ LMKTL FKKVSLLGWSDGGITAL AAA+YP Y
Sbjct: 115 PRGYGHSRPPDRDFPMDFLERDAKDAVDLMKTLNFKKVSLLGWSDGGITALIAAAKYPLY 174
Query: 501 VSKMVIWGANAYVTDQDERIYQGIRDVSKWSERTRKPLEALYGFDYFARTCEKWVDGIMQ 680
++KMVIWGANAYVTD+DE+IYQGIRDVSKWSE+TRKPLE LYG+DYFA+TCEKWVDG+ Q
Sbjct: 175 INKMVIWGANAYVTDEDEKIYQGIRDVSKWSEKTRKPLETLYGYDYFAKTCEKWVDGMQQ 234
Query: 681 FKRLPEGNICRHLLPLVQCPTLIVHGEKDPLVPRFHADYIHEHVRGSRLHLMPEGKHNLH 860
FK LP+GNICRHLLPLVQCPTLIVHGEKDPLVPR H D+IH+HV+GSRLHLMPEGKHNLH
Sbjct: 235 FKHLPDGNICRHLLPLVQCPTLIVHGEKDPLVPRPHVDFIHKHVKGSRLHLMPEGKHNLH 294
Query: 861 LRFADEFNKLAEDFL 905
LRFADEFNKL EDFL
Sbjct: 295 LRFADEFNKLVEDFL 309
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,845,434
Number of extensions: 1132333
Number of successful extensions: 4239
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4235
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013818
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013818
(1006 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039383.1| valacyclovir hydrolase [Bos taurus]. 501 e-142
Alignment gi|XP_002697676.1| PREDICTED: biphenyl hydrolase-like [Bos taur... 138 9e-33
>ref|NP_001039383.1| valacyclovir hydrolase [Bos taurus].
Length = 291
Score = 501 bits (1291), Expect = e-142
Identities = 239/270 (88%), Positives = 253/270 (93%)
Frame = +3
Query: 96 KPGLHVPRAGPSAAFSSSVTSARVAVNGVHLHYLQTGEGEHAVLLLPGMLGSGETDFGPQ 275
KPG+ +PRAGP+AAF SSVTSA+ AVNGVHLHYL+TG GEHAVLLLPGMLGSGETDFGPQ
Sbjct: 21 KPGIQIPRAGPAAAFGSSVTSAKAAVNGVHLHYLRTGGGEHAVLLLPGMLGSGETDFGPQ 80
Query: 276 IEALNKKLFTVVAWDPRGYGRSRPPDRDFPREFFERDAEDAIGLMKTLKFKKVSLLGWSD 455
IE LNKKLFTVVAWDPRGYG SRPPDRDFP +FFERDA+DAI LMKTLKFKKVSLLGWSD
Sbjct: 81 IENLNKKLFTVVAWDPRGYGHSRPPDRDFPVDFFERDAKDAIDLMKTLKFKKVSLLGWSD 140
Query: 456 GGITALTAAARYPSYVSKMVIWGANAYVTDQDERIYQGIRDVSKWSERTRKPLEALYGFD 635
GGITAL AAARYPSYVSKMVIWGANAYVT+QD IYQGIRDVSK SE+TRKPLEALYGFD
Sbjct: 141 GGITALIAAARYPSYVSKMVIWGANAYVTEQDTEIYQGIRDVSKRSEKTRKPLEALYGFD 200
Query: 636 YFARTCEKWVDGIMQFKRLPEGNICRHLLPLVQCPTLIVHGEKDPLVPRFHADYIHEHVR 815
YFARTCEKWVDGI QFK LP+G+ICR LLPLVQCPTLIVHGEKDPLVPRFHAD++H HVR
Sbjct: 201 YFARTCEKWVDGIEQFKHLPDGSICRDLLPLVQCPTLIVHGEKDPLVPRFHADFLHRHVR 260
Query: 816 GSRLHLMPEGKHNLHLRFADEFNKLAEDFL 905
GSRLHLMPEGKHNLHLRFADEFN+LAE FL
Sbjct: 261 GSRLHLMPEGKHNLHLRFADEFNRLAEGFL 290
>ref|XP_002697676.1| PREDICTED: biphenyl hydrolase-like [Bos taurus].
Length = 362
Score = 138 bits (347), Expect = 9e-33
Identities = 62/69 (89%), Positives = 66/69 (95%)
Frame = +3
Query: 699 GNICRHLLPLVQCPTLIVHGEKDPLVPRFHADYIHEHVRGSRLHLMPEGKHNLHLRFADE 878
G+ICR LLPLVQCPTLIVHGEKDPLVPRFHAD++H HVRGSRLHLMPEGKHNLHLRFADE
Sbjct: 293 GSICRDLLPLVQCPTLIVHGEKDPLVPRFHADFLHRHVRGSRLHLMPEGKHNLHLRFADE 352
Query: 879 FNKLAEDFL 905
FN+LAE FL
Sbjct: 353 FNRLAEGFL 361
Score = 89.4 bits (220), Expect = 5e-18
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +3
Query: 96 KPGLHVPRAGPSAAFSSSVTSARVAVNGVHLHYLQTGEGEHAVLLLPGML 245
KPG+ +PRAGP+AAF SSVTSA+ AVNGVHLHYL+TG GEHAVLLLPGML
Sbjct: 21 KPGIQIPRAGPAAAFGSSVTSAKAAVNGVHLHYLRTGGGEHAVLLLPGML 70
Score = 59.7 bits (143), Expect = 4e-09
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = -1
Query: 520 QITILLT*DGYLAAAVRAVIPPSLHPSRETFLNLSV 413
+ITILLT +GY AAA+RAVIPPSLHPS+ETFLN SV
Sbjct: 72 KITILLTYEGYRAAAMRAVIPPSLHPSKETFLNFSV 107
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,093,138
Number of extensions: 1094718
Number of successful extensions: 4013
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4002
Number of HSP's successfully gapped: 4
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013818
(1006 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230414.1| valacyclovir hydrolase [Sus scrofa]. 580 e-166
Alignment gi|XP_003354164.1| PREDICTED: epoxide hydrolase 3-like [Sus scr... 48 1e-05
>ref|NP_001230414.1| valacyclovir hydrolase [Sus scrofa].
Length = 298
Score = 580 bits (1494), Expect = e-166
Identities = 278/278 (100%), Positives = 278/278 (100%)
Frame = +3
Query: 96 KPGLHVPRAGPSAAFSSSVTSARVAVNGVHLHYLQTGEGEHAVLLLPGMLGSGETDFGPQ 275
KPGLHVPRAGPSAAFSSSVTSARVAVNGVHLHYLQTGEGEHAVLLLPGMLGSGETDFGPQ
Sbjct: 21 KPGLHVPRAGPSAAFSSSVTSARVAVNGVHLHYLQTGEGEHAVLLLPGMLGSGETDFGPQ 80
Query: 276 IEALNKKLFTVVAWDPRGYGRSRPPDRDFPREFFERDAEDAIGLMKTLKFKKVSLLGWSD 455
IEALNKKLFTVVAWDPRGYGRSRPPDRDFPREFFERDAEDAIGLMKTLKFKKVSLLGWSD
Sbjct: 81 IEALNKKLFTVVAWDPRGYGRSRPPDRDFPREFFERDAEDAIGLMKTLKFKKVSLLGWSD 140
Query: 456 GGITALTAAARYPSYVSKMVIWGANAYVTDQDERIYQGIRDVSKWSERTRKPLEALYGFD 635
GGITALTAAARYPSYVSKMVIWGANAYVTDQDERIYQGIRDVSKWSERTRKPLEALYGFD
Sbjct: 141 GGITALTAAARYPSYVSKMVIWGANAYVTDQDERIYQGIRDVSKWSERTRKPLEALYGFD 200
Query: 636 YFARTCEKWVDGIMQFKRLPEGNICRHLLPLVQCPTLIVHGEKDPLVPRFHADYIHEHVR 815
YFARTCEKWVDGIMQFKRLPEGNICRHLLPLVQCPTLIVHGEKDPLVPRFHADYIHEHVR
Sbjct: 201 YFARTCEKWVDGIMQFKRLPEGNICRHLLPLVQCPTLIVHGEKDPLVPRFHADYIHEHVR 260
Query: 816 GSRLHLMPEGKHNLHLRFADEFNKLAEDFLCNSVPENM 929
GSRLHLMPEGKHNLHLRFADEFNKLAEDFLCNSVPENM
Sbjct: 261 GSRLHLMPEGKHNLHLRFADEFNKLAEDFLCNSVPENM 298
>ref|XP_003354164.1| PREDICTED: epoxide hydrolase 3-like [Sus scrofa].
Length = 360
Score = 47.8 bits (112), Expect = 1e-05
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Frame = +3
Query: 174 NGVHLHYLQTGEGEHAVLLLPGMLGSGETDFGPQIEALN-KKLFTVVAWDPRGYGRS-RP 347
+GVHLHY+ G G ++L + G E F + + + F VVA D RGYG S P
Sbjct: 83 SGVHLHYVSAGRGNGPLMLF--LHGFPENWFSWRYQIREFQSHFHVVAVDLRGYGSSDAP 140
Query: 348 PDRD-FPREFFERDAEDAIGLMKTLKFKKVSLLGWSDGGITALTAAARYPSYVSKMVIWG 524
D D + + D +D I L + K L+ G + A + YPS V +MV+
Sbjct: 141 SDMDCYTIDLLMADIQDVI---LGLGYSKCILVAHDWGALLAWNFSIYYPSLVERMVVVS 197
Query: 525 ANAYVTDQD 551
A QD
Sbjct: 198 AAPMSVYQD 206
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,632,790
Number of extensions: 707757
Number of successful extensions: 2624
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2620
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013818
(1006 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080788.1| valacyclovir hydrolase precursor [Mus musculus]. 471 e-133
>ref|NP_080788.1| valacyclovir hydrolase precursor [Mus musculus].
Length = 291
Score = 471 bits (1213), Expect = e-133
Identities = 217/270 (80%), Positives = 247/270 (91%)
Frame = +3
Query: 96 KPGLHVPRAGPSAAFSSSVTSARVAVNGVHLHYLQTGEGEHAVLLLPGMLGSGETDFGPQ 275
K + VP+A P A F ++VTSA+VAVNGVHLHY + GEGEHA+LLLPGMLGSG+TDF PQ
Sbjct: 21 KSRICVPQAEPVATFGTAVTSAKVAVNGVHLHYQRVGEGEHAILLLPGMLGSGKTDFAPQ 80
Query: 276 IEALNKKLFTVVAWDPRGYGRSRPPDRDFPREFFERDAEDAIGLMKTLKFKKVSLLGWSD 455
+++LNKK FT+VAWDPRGYG SRPPDRDFPR+FFERDA+DA+ LMK L+FK+VSLLGWSD
Sbjct: 81 LQSLNKKRFTLVAWDPRGYGYSRPPDRDFPRDFFERDAKDAVDLMKALQFKQVSLLGWSD 140
Query: 456 GGITALTAAARYPSYVSKMVIWGANAYVTDQDERIYQGIRDVSKWSERTRKPLEALYGFD 635
GGITAL AAA+YPSY+ KMVIWGANAYVT++D RIYQGIRDVSKWSE+ RKPLEALYG+D
Sbjct: 141 GGITALIAAAKYPSYIRKMVIWGANAYVTEEDSRIYQGIRDVSKWSEKARKPLEALYGYD 200
Query: 636 YFARTCEKWVDGIMQFKRLPEGNICRHLLPLVQCPTLIVHGEKDPLVPRFHADYIHEHVR 815
Y A+TCE WVDGI QFK+LPEGNICRHLLPLVQCPTLIVHGEKDPLVPRFHAD++ +HV+
Sbjct: 201 YLAKTCEDWVDGISQFKQLPEGNICRHLLPLVQCPTLIVHGEKDPLVPRFHADFLLQHVK 260
Query: 816 GSRLHLMPEGKHNLHLRFADEFNKLAEDFL 905
GSRLHLMPEGKHNLHLRFADEFN+L EDFL
Sbjct: 261 GSRLHLMPEGKHNLHLRFADEFNRLVEDFL 290
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,668,523
Number of extensions: 912805
Number of successful extensions: 3115
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3106
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013818
(1006 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004323.2| valacyclovir hydrolase precursor [Homo sapiens]. 506 e-143
>ref|NP_004323.2| valacyclovir hydrolase precursor [Homo sapiens].
Length = 291
Score = 506 bits (1302), Expect = e-143
Identities = 235/270 (87%), Positives = 254/270 (94%)
Frame = +3
Query: 96 KPGLHVPRAGPSAAFSSSVTSARVAVNGVHLHYLQTGEGEHAVLLLPGMLGSGETDFGPQ 275
KPG+HVPRAGP+AAF +SVTSA+VAVNGV LHY QTGEG+HAVLLLPGMLGSGETDFGPQ
Sbjct: 21 KPGIHVPRAGPAAAFGTSVTSAKVAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQ 80
Query: 276 IEALNKKLFTVVAWDPRGYGRSRPPDRDFPREFFERDAEDAIGLMKTLKFKKVSLLGWSD 455
++ LNKKLFTVVAWDPRGYG SRPPDRDFP +FFERDA+DA+ LMK LKFKKVSLLGWSD
Sbjct: 81 LKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWSD 140
Query: 456 GGITALTAAARYPSYVSKMVIWGANAYVTDQDERIYQGIRDVSKWSERTRKPLEALYGFD 635
GGITAL AAA+YPSY+ KMVIWGANAYVTD+D IY+GIRDVSKWSERTRKPLEALYG+D
Sbjct: 141 GGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYD 200
Query: 636 YFARTCEKWVDGIMQFKRLPEGNICRHLLPLVQCPTLIVHGEKDPLVPRFHADYIHEHVR 815
YFARTCEKWVDGI QFK LP+GNICRHLLP VQCP LIVHGEKDPLVPRFHAD+IH+HV+
Sbjct: 201 YFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVK 260
Query: 816 GSRLHLMPEGKHNLHLRFADEFNKLAEDFL 905
GSRLHLMPEGKHNLHLRFADEFNKLAEDFL
Sbjct: 261 GSRLHLMPEGKHNLHLRFADEFNKLAEDFL 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,868,043
Number of extensions: 1094237
Number of successful extensions: 3901
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3890
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013818
(1006 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 333 1e-88
gb|GL894638.2| Sus scrofa unplaced genomic scaffold ChrUScaf2522 103 2e-19
>Sscrofa_Chr07
|| Length = 134764511
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 246 ggaagtggcgagacggatttcggccctcagatcgaggccctcaacaagaagctcttcacg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1955556 ggaagtggcgagacggatttcggccctcagatcgaggccctcaacaagaagctcttcacg 1955615
Query: 306 gtggtcgcctgggacccccgaggctacggacgctccagacccccggatcgagacttcccc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1955616 gtggtcgcctgggacccccgaggctacggacgctccagacccccggatcgagacttcccc 1955675
Query: 366 cgggagtttttcgaaagggacgcagaagacgccattggcctgatgaag 413
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1955676 cgggagtttttcgaaagggacgcagaagacgccattggcctgatgaag 1955723
Score = 295 bits (149), Expect = 2e-77
Identities = 161/165 (97%)
Strand = Plus / Plus
Query: 823 ggttgcacctgatgccggaaggcaagcacaacctgcatttacgttttgcagatgaattca 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973991 ggttgcacctgatgccggaaggcaagcacaacctgcatttacgttttgcagatgaattca 1974050
Query: 883 acaagttagcagaagacttcctatgcaacagtgtccctgagaacatgtgacccagtgatt 942
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1974051 acaagttagcagaagacttcctatgcaacagtgtccctgagaacatgtgacccggtgatt 1974110
Query: 943 cccctgcctggggcgggagcctggggtgctgccccctaaactgca 987
| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1974111 ctcctgcctggggcgggagcctggggtgctgcccctaaaactgca 1974155
Score = 272 bits (137), Expect = 3e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 567 ggtatccgcgacgtttctaaatggagtgagagaacgaggaagccgctggaagccctgtat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1962947 ggtatccgcgacgtttctaaatggagtgagagaacgaggaagccgctggaagccctgtat 1963006
Query: 627 gggttcgactactttgccaggacctgtgagaagtgggtggatggcatcatgcagtttaaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963007 gggttcgactactttgccaggacctgtgagaagtgggtggatggcatcatgcagtttaaa 1963066
Query: 687 cgtcttcccgaaggtaa 703
|||||||||||||||||
Sbjct: 1963067 cgtcttcccgaaggtaa 1963083
Score = 254 bits (128), Expect = 8e-65
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 698 aggtaacatctgtcggcacctgctgcccctggtgcagtgtcccaccttgatcgtgcatgg 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1965940 aggtaacatctgtcggcacctgctgcccctggtgcagtgtcccaccttgatcgtgcatgg 1965999
Query: 758 cgagaaggaccctctggtcccacgtttccacgccgactatatccatgaacatgtgcgagg 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1966000 cgagaaggaccctctggtcccacgtttccacgccgactatatccatgaacatgtgcgagg 1966059
Query: 818 gtcacggt 825
||||||||
Sbjct: 1966060 gtcacggt 1966067
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 140 cagctcctctgtgacctctgccagagtggccgtgaacggcgtccacctgcattacctgca 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952913 cagctcctctgtgacctctgccagagtggccgtgaacggcgtccacctgcattacctgca 1952972
Query: 200 gacgggagagggagagcacgcggtcctgctgctgccggggatgttggg 247
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952973 gacgggagagggagagcacgcggtcctgctgctgccggggatgttggg 1953020
Score = 103 bits (52), Expect = 2e-19
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 814 gagggtcacggttgcacctgatgccggaaggcaagcacaacctgcatttacgttttgcag 873
||||||||| ||| || |||||||| ||||||||||||| |||| |||||| |||||||
Sbjct: 8621641 gagggtcacagttacatctgatgccagaaggcaagcacagcctgtatttacattttgcaa 8621582
Query: 874 atgaattcaacaagttagcagaagactt 901
||||||||| ||||||||||||||||||
Sbjct: 8621581 atgaattcagcaagttagcagaagactt 8621554
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 96 aagccagggctccacgtccccagggccgggccctcggccgcgttcag 142
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947322 aagccagggctccacgtccccagggccgggccctcggccgcgttcag 1947368
>gb|GL894638.2| Sus scrofa unplaced genomic scaffold ChrUScaf2522
Length = 121685
Score = 103 bits (52), Expect = 2e-19
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 814 gagggtcacggttgcacctgatgccggaaggcaagcacaacctgcatttacgttttgcag 873
||||||||| ||| || |||||||| ||||||||||||| |||| |||||| |||||||
Sbjct: 78902 gagggtcacagttacatctgatgccagaaggcaagcacagcctgtatttacattttgcaa 78843
Query: 874 atgaattcaacaagttagcagaagactt 901
||||||||| ||||||||||||||||||
Sbjct: 78842 atgaattcagcaagttagcagaagactt 78815
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,113,086
Number of extensions: 127
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 8
Length of query: 1006
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 985
Effective length of database: 2,808,413,156
Effective search space: 2766286958660
Effective search space used: 2766286958660
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)