Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013829
(945 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091485.1| inter-alpha-trypsin inhibitor heavy chain H2... 483 e-136
Alignment gi|NP_001095368.1| inter-alpha-trypsin inhibitor heavy chain H3... 181 8e-46
Alignment gi|NP_001015590.2| inter-alpha-trypsin inhibitor heavy chain H4... 178 5e-45
Alignment gi|NP_001068821.1| inter-alpha-trypsin inhibitor heavy chain H1... 159 3e-39
Alignment gi|NP_001095986.1| inter-alpha-trypsin inhibitor heavy chain H5... 89 4e-18
>ref|NP_001091485.1| inter-alpha-trypsin inhibitor heavy chain H2 [Bos taurus].
Length = 946
Score = 483 bits (1243), Expect = e-136
Identities = 240/278 (86%), Positives = 256/278 (92%)
Frame = +2
Query: 110 MKGLTCFLLCFLLSEAQGFEIPTNGLSEFAEYGDLAELALGKFHVVPGNRRSQRSASGES 289
MKGLTCF LCF LSE++GFEIPTNGLSEFA+YGD ELA GKF VP NRR QRS SGES
Sbjct: 1 MKGLTCFFLCFFLSESRGFEIPTNGLSEFADYGDHVELAPGKFQFVPENRRYQRSISGES 60
Query: 290 GEMMEGVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFS 469
GE E VDQVT+YSYKVQSTITSR+ANTVIQTKVVNHSP+PQ+VVFD+ IPKGAFISNFS
Sbjct: 61 GERTEDVDQVTVYSYKVQSTITSRVANTVIQTKVVNHSPQPQNVVFDVQIPKGAFISNFS 120
Query: 470 MTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFE 649
MTVDGT FTSSIKEKTVGRALY QARAKGKTAGLVRSRALDME+FKTEV+IAPGAKVQFE
Sbjct: 121 MTVDGTTFTSSIKEKTVGRALYAQARAKGKTAGLVRSRALDMEDFKTEVSIAPGAKVQFE 180
Query: 650 LHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVV 829
LHYQEVKWR LGSYEHR+HL+PGRLAKHLEVDV+IIEPQGLR LHVLDTFDGHFDGVPVV
Sbjct: 181 LHYQEVKWRKLGSYEHRLHLKPGRLAKHLEVDVRIIEPQGLRSLHVLDTFDGHFDGVPVV 240
Query: 830 VKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
KG QKAH+AFKPTVAQQRKC +CSET VDG+LVVMYD
Sbjct: 241 SKGPQKAHIAFKPTVAQQRKCLNCSETMVDGELVVMYD 278
>ref|NP_001095368.1| inter-alpha-trypsin inhibitor heavy chain H3 precursor [Bos
taurus].
Length = 891
Score = 181 bits (459), Expect = 8e-46
Identities = 96/246 (39%), Positives = 148/246 (60%), Gaps = 2/246 (0%)
Frame = +2
Query: 212 LAELALGKFHVVPGNRRSQRSASGESGEMMEGVDQVTLYSYKVQSTITSRMANTVIQTKV 391
L+ LA+ F P +RS G + VD + +YS KV +TSR A+ V+ T+
Sbjct: 14 LSGLAVSGFPRNPSLLLGKRSLPGRA------VDGIEVYSTKVNCKVTSRFAHNVVTTRA 67
Query: 392 VNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGL 571
VNH+ ++V FD+ +PK AFI+NF++T+DG + +KEK V + Y +A ++GKTAGL
Sbjct: 68 VNHANTAKEVSFDVELPKTAFITNFTLTIDGVTYPGKVKEKEVAKKQYEKAVSQGKTAGL 127
Query: 572 VRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQ 751
V++ +E F VN+A G+KV FEL Y+E+ R+ G YE + +QP +L KH E+ V
Sbjct: 128 VKASGRKLEKFTVSVNVAAGSKVTFELTYEELLKRHKGKYEMYLKVQPKQLVKHFEITVD 187
Query: 752 IIEPQGLRFLHVLDTFDGHFDGVPVVVK--GQQKAHVAFKPTVAQQRKCPSCSETAVDGK 925
I EPQG+ L +F + + K +K HV+FKP++ QQR CP+C+++ + G
Sbjct: 188 IFEPQGISTLDAEASFITNDLLGSALTKSFSGKKGHVSFKPSLDQQRSCPTCTDSLLKGD 247
Query: 926 LVVMYD 943
++ YD
Sbjct: 248 FIITYD 253
>ref|NP_001015590.2| inter-alpha-trypsin inhibitor heavy chain H4 precursor [Bos
taurus].
Length = 916
Score = 178 bits (452), Expect = 5e-45
Identities = 89/212 (41%), Positives = 134/212 (63%), Gaps = 1/212 (0%)
Frame = +2
Query: 311 DQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTK 490
+ + +YS V S ++SR A+TVI ++VVN + ++ F + +PK AFI+NFSM +DG
Sbjct: 32 NDIDIYSLTVDSKVSSRFAHTVITSRVVNKADAVREATFQMELPKKAFITNFSMVIDGVT 91
Query: 491 FTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVK 670
+ +IKEK + Y A A+G++AGLVR+ E F+ V++AP AKV FEL Y+E+
Sbjct: 92 YPGNIKEKAAAQEQYSAAVARGESAGLVRATGRKTEQFQVSVSVAPAAKVTFELVYEELL 151
Query: 671 WRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTF-DGHFDGVPVVVKGQQK 847
R+LG+YE + ++P +L KHL++D+ I EPQG+ FL TF + + K
Sbjct: 152 ARHLGAYELLLKVRPQQLVKHLQMDIHIFEPQGISFLETESTFMTNKLAEALTTSQNKTK 211
Query: 848 AHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
AHV FKPT++QQ+K P +T +DG +V YD
Sbjct: 212 AHVRFKPTLSQQQKYPEKQDTVIDGSFIVRYD 243
>ref|NP_001068821.1| inter-alpha-trypsin inhibitor heavy chain H1 precursor [Bos
taurus].
Length = 906
Score = 159 bits (403), Expect = 3e-39
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 2/214 (0%)
Frame = +2
Query: 308 VDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGT 487
VD V + S KV +TSR A+ +I ++VVN + ++V F++ IPK AFIS+F++T D
Sbjct: 43 VDGVVIRSLKVNCKVTSRFAHYIITSQVVNSADTAKEVSFNVEIPKTAFISDFAITADEN 102
Query: 488 KFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEV 667
FT IK+K Y +A G+ AGLVR+ ME F + + P +K F L Y+EV
Sbjct: 103 AFTGDIKDKVTAWKQYRKAAISGENAGLVRASGRTMEQFSIHIIVGPRSKATFRLTYEEV 162
Query: 668 KWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVVVK--GQ 841
R L Y+ I ++P +L +H E+DV I EPQG+R L V +F ++ K
Sbjct: 163 LRRKLMQYDIVIKVKPQQLVQHFEIDVDIFEPQGIRKLDVEASFLPKELAAQLIKKSFSG 222
Query: 842 QKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+K HV F+PTV+QQ+ CP+CS T ++G V YD
Sbjct: 223 KKGHVLFRPTVSQQQTCPTCSTTLLNGDFKVTYD 256
>ref|NP_001095986.1| inter-alpha-trypsin inhibitor heavy chain H5 precursor [Bos
taurus].
Length = 940
Score = 89.4 bits (220), Expect = 4e-18
Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 18/222 (8%)
Frame = +2
Query: 332 YKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFTSSIKE 511
+ V+STI SR A T + +++N E Q+V F + IP AFI+NF+ + + I E
Sbjct: 54 FSVKSTIISRYAFTTVACRMLNRGSEDQEVTFQMQIPAAAFITNFTALIGDKVYQGEITE 113
Query: 512 KTVGRALYWQARAKGKTAGLVRSRALD------MENFKTEVNIAPGAKVQFELHYQEVKW 673
+ + G R++ ++ E F+ + K F L Y+E+
Sbjct: 114 R---------EKRNGDKVKEKRNKTIEDNGEKGTETFRASAVLPSKDKAAFLLSYEELLQ 164
Query: 674 RNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFD--------GHFDGVP-- 823
R LG YEH + ++P +L L V+V ++E G+ L VL + G D P
Sbjct: 165 RRLGKYEHVVSVRPQQLVGRLTVEVTVLERPGIAELEVLGLQNSRQRGSGRGPDDSGPPP 224
Query: 824 --VVVKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
V+ + + A V FKP+V QQ K ++ + G +V YD
Sbjct: 225 STVINQNETFAKVVFKPSVVQQAK---IAQNGILGDFIVRYD 263
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,545,459
Number of extensions: 1135509
Number of successful extensions: 3674
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3663
Number of HSP's successfully gapped: 5
Length of query: 315
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,306,398
Effective search space: 3047262774
Effective search space used: 3047262774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013829
(945 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535195.2| PREDICTED: similar to inter-alpha globulin inhi... 469 e-132
Alignment gi|XP_848765.1| PREDICTED: similar to inter-alpha (globulin) in... 164 1e-40
Alignment gi|XP_533794.2| PREDICTED: similar to Inter-alpha-trypsin inhib... 157 1e-38
Alignment gi|XP_548489.2| PREDICTED: similar to inter-alpha (globulin) in... 146 2e-35
Alignment gi|XP_541846.2| PREDICTED: similar to inter-alpha (globulin) in... 135 6e-32
Alignment gi|XP_544264.2| PREDICTED: similar to inter-alpha trypsin inhib... 96 4e-20
>ref|XP_535195.2| PREDICTED: similar to inter-alpha globulin inhibitor H2 polypeptide
[Canis familiaris].
Length = 946
Score = 469 bits (1208), Expect = e-132
Identities = 230/278 (82%), Positives = 250/278 (89%)
Frame = +2
Query: 110 MKGLTCFLLCFLLSEAQGFEIPTNGLSEFAEYGDLAELALGKFHVVPGNRRSQRSASGES 289
M L C L+CF + E QGFEIPTNGL EFAEYGDL ELA GKF VP NRR QRS GES
Sbjct: 1 MNRLMCLLICFFVFETQGFEIPTNGLPEFAEYGDLVELAPGKFQFVPENRRYQRSVFGES 60
Query: 290 GEMMEGVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFS 469
GE+ME DQVTLYSYKVQSTITSRMANT+IQTK+VN+SP+PQ+VVFD+ IPKGAFISNFS
Sbjct: 61 GEVMEEADQVTLYSYKVQSTITSRMANTIIQTKLVNNSPQPQNVVFDVQIPKGAFISNFS 120
Query: 470 MTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFE 649
MTVDGT FTSSI+EKTVGRALY QARAKGKT GLVRSRALDMENF+TEVNI PGAKVQFE
Sbjct: 121 MTVDGTTFTSSIREKTVGRALYSQARAKGKTTGLVRSRALDMENFQTEVNILPGAKVQFE 180
Query: 650 LHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVV 829
LHYQEVKWR LGSYEHR+HLQPGRLAKHLEVDV +IEPQG+RFLHV DTFDGHFDGVPV+
Sbjct: 181 LHYQEVKWRKLGSYEHRLHLQPGRLAKHLEVDVWVIEPQGIRFLHVPDTFDGHFDGVPVI 240
Query: 830 VKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
KGQQKAHV+FKP+VA+QRKC +CSETAVDG+LVVMYD
Sbjct: 241 SKGQQKAHVSFKPSVARQRKCSNCSETAVDGELVVMYD 278
>ref|XP_848765.1| PREDICTED: similar to inter-alpha (globulin) inhibitor H4 (plasma
Kallikrein-sensitive glycoprotein) [Canis familiaris].
Length = 826
Score = 164 bits (415), Expect = 1e-40
Identities = 83/212 (39%), Positives = 128/212 (60%), Gaps = 1/212 (0%)
Frame = +2
Query: 311 DQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTK 490
+ +++YS+ V S ++SR A+TV+ ++VVN + Q+ F + +PK AFI+NFSM ++G
Sbjct: 31 NDISIYSFTVDSKVSSRFAHTVVTSRVVNRAETVQEATFQVELPKRAFITNFSMIIEGVT 90
Query: 491 FTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVK 670
+ +IKEK + Y A A+G++AGLV++ E F+ VN+AP AKV FEL Y+E+
Sbjct: 91 YPGNIKEKAAAQEQYSAAVARGESAGLVKATGRKTEQFQVSVNVAPAAKVTFELVYEELL 150
Query: 671 WRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTF-DGHFDGVPVVVKGQQK 847
R LG YE + +QP +L KHL++D+ I EPQG+ FL TF + + + K
Sbjct: 151 KRQLGVYELLLKVQPQQLVKHLQMDIHIFEPQGISFLKTESTFMTSELANALTISQNKTK 210
Query: 848 AHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
AH+ FKP +K + +DG +V YD
Sbjct: 211 AHIQFKP-----QKTAGQLDKVLDGNFIVRYD 237
>ref|XP_533794.2| PREDICTED: similar to Inter-alpha-trypsin inhibitor heavy chain H1
precursor (ITI heavy chain H1) (Inter-alpha-inhibitor
heavy chain 1) (Inter-alpha-trypsin inhibitor complex
component III) (Serum-derived hyaluronan-associated
protein) (SHAP) [Canis familiaris].
Length = 910
Score = 157 bits (398), Expect = 1e-38
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 2/214 (0%)
Frame = +2
Query: 308 VDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGT 487
VD VT+ S KV +TSR A+ VI ++VVN++ E +++ FD+ IPK AFIS+F++T DG+
Sbjct: 47 VDGVTIRSLKVNCKVTSRFAHYVITSQVVNNADEAKEISFDVEIPKTAFISDFAITADGS 106
Query: 488 KFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEV 667
F IK+K Y +A G+ AGLVR+ ME F + I P +K F L Y+EV
Sbjct: 107 AFIGDIKDKVTAWKQYRKAAISGENAGLVRASGRTMEQFTIHLTIGPRSKATFRLTYEEV 166
Query: 668 KWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVVVK--GQ 841
R L Y+ I ++P +L H E+DV I EPQG+ L +F + +V K
Sbjct: 167 LKRRLMQYDIVIKVKPKQLVHHFEIDVDIFEPQGISKLDAHASFLSNDLASQLVKKSFSG 226
Query: 842 QKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
++ V F PTV+QQ+ CP+CS + ++G V YD
Sbjct: 227 KQGRVLFHPTVSQQQSCPTCSTSLLNGDFKVTYD 260
>ref|XP_548489.2| PREDICTED: similar to inter-alpha (globulin) inhibitor H3 [Canis
familiaris].
Length = 897
Score = 146 bits (369), Expect = 2e-35
Identities = 75/192 (39%), Positives = 119/192 (61%), Gaps = 2/192 (1%)
Frame = +2
Query: 374 VIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFTSSIKEKTVGRALYWQARAK 553
V TK+ S ++V FD+ +PK AFI+NF++T+DG + ++KEK V + Y +A ++
Sbjct: 71 VYSTKI---SYTAKEVSFDVELPKTAFITNFTLTIDGVTYPGNVKEKEVAKKQYEKAVSQ 127
Query: 554 GKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWRNLGSYEHRIHLQPGRLAKH 733
GKTAGLV++ +E F VN+A G+KV FEL Y+E+ R G YE + +QP +L KH
Sbjct: 128 GKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYEELLKRRKGKYEMYLKVQPKQLVKH 187
Query: 734 LEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVVVK--GQQKAHVAFKPTVAQQRKCPSCSE 907
E++ I EPQG+ L +F + + K +K V+FKP++ QQR CP+C++
Sbjct: 188 FEIEADIYEPQGISTLDAEASFITNDLLGSALTKSFSGKKGRVSFKPSLDQQRSCPTCTD 247
Query: 908 TAVDGKLVVMYD 943
+ ++G ++ YD
Sbjct: 248 SLLNGDFIITYD 259
>ref|XP_541846.2| PREDICTED: similar to inter-alpha (globulin) inhibitor H3 [Canis
familiaris].
Length = 243
Score = 135 bits (340), Expect = 6e-32
Identities = 82/214 (38%), Positives = 122/214 (57%), Gaps = 16/214 (7%)
Frame = +2
Query: 269 RSASGESGE--MMEGVDQ-VTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHI 439
RS S G+ + EGV + +YS K+ +TSR A+ V+ T+ V + ++V FD+ +
Sbjct: 24 RSPSRPLGKRSLPEGVSNGIEVYSTKISCKVTSRFAHNVVTTRAVYRADTAKEVSFDVEL 83
Query: 440 PKGAFISNFSMTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVN 619
PK AFI+NF++T+DG + ++KEK V + Y +A ++GKTAGLV++ +E F VN
Sbjct: 84 PKTAFITNFTLTIDGVTYPGNVKEKEVAKKQYEKAVSQGKTAGLVKASGRKLEKFTVSVN 143
Query: 620 IAPGAKVQFELHYQEVKWRNLGSYEHRIHLQPGRLAKHLEV----------DVQIIEPQG 769
+A G+KV FEL Y+E+ R G YE + +QP +L KH EV D+Q G
Sbjct: 144 VAAGSKVTFELTYEELLKRRKGKYEMYLKVQPKQLVKHFEVSSIRYRKLVHDLQASAMGG 203
Query: 770 LRFLHV-LDTFDG--HFDGVPVVVKGQQKAHVAF 862
L +H+ D D H GVP +K HVA+
Sbjct: 204 LAKVHIWTDQMDSTQHPVGVPWFLKHCATCHVAW 237
>ref|XP_544264.2| PREDICTED: similar to inter-alpha trypsin inhibitor heavy chain
precursor 5 isoform 1 [Canis familiaris].
Length = 893
Score = 96.3 bits (238), Expect = 4e-20
Identities = 72/218 (33%), Positives = 107/218 (49%), Gaps = 14/218 (6%)
Frame = +2
Query: 332 YKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFTSSI-- 505
+ V+STI SR A T + +++N + E Q++ F + IP AFI+NF+M + F I
Sbjct: 11 FSVKSTIISRYAFTTVSCRLLNRASEDQEIEFQMQIPAAAFITNFTMLLGDQVFQGEITE 70
Query: 506 KEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWRNLG 685
+EK G L + KT+ + +M F+ V I K F L Y+E+ R LG
Sbjct: 71 REKKNGDKL---KEKRNKTSEDNGEKGTEM--FRASVVIPSKDKAAFFLSYEELLQRRLG 125
Query: 686 SYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVL--------DTFDGHFDGVP----VV 829
YEH I ++P +L L V+V I+E GL L VL + G D P V+
Sbjct: 126 KYEHVISVRPQQLVGRLMVEVNILERSGLESLEVLPLQHSRQKGSGRGEDDSGPPPSTVI 185
Query: 830 VKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ A V FKP+V QQ K ++ + G ++ YD
Sbjct: 186 NQNDTFAKVTFKPSVVQQAK---IAQNGILGDFIIRYD 220
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,177,787
Number of extensions: 1164675
Number of successful extensions: 3546
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3543
Number of HSP's successfully gapped: 6
Length of query: 315
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 212
Effective length of database: 15,440,896
Effective search space: 3273469952
Effective search space used: 3273469952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013829
(945 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999068.1| inter-alpha-trypsin inhibitor heavy chain H2 pr... 526 e-150
Alignment gi|NP_001001537.1| inter-alpha-trypsin inhibitor heavy chain H4... 178 3e-45
Alignment gi|NP_001193278.1| inter-alpha-trypsin inhibitor heavy chain H3... 176 2e-44
Alignment gi|NP_999089.1| inter-alpha-trypsin inhibitor heavy chain H1 pr... 159 2e-39
Alignment gi|XP_003130868.1| PREDICTED: inter-alpha-trypsin inhibitor hea... 97 1e-20
>ref|NP_999068.1| inter-alpha-trypsin inhibitor heavy chain H2 precursor [Sus
scrofa].
Length = 935
Score = 526 bits (1356), Expect = e-150
Identities = 265/278 (95%), Positives = 266/278 (95%)
Frame = +2
Query: 110 MKGLTCFLLCFLLSEAQGFEIPTNGLSEFAEYGDLAELALGKFHVVPGNRRSQRSASGES 289
MKGLTCFLLCFLLSEAQGFEIPTNGLSEFAEYGDLAELALGKFHVVPGNRRSQ
Sbjct: 1 MKGLTCFLLCFLLSEAQGFEIPTNGLSEFAEYGDLAELALGKFHVVPGNRRSQ------- 53
Query: 290 GEMMEGVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFS 469
EGVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDI IPKGAFISNFS
Sbjct: 54 ----EGVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIQIPKGAFISNFS 109
Query: 470 MTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFE 649
MTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFE
Sbjct: 110 MTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFE 169
Query: 650 LHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVV 829
LHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVV
Sbjct: 170 LHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVV 229
Query: 830 VKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
VKGQQKAHVAFKPTVAQQRKCPSCSETAVDG+LVVMYD
Sbjct: 230 VKGQQKAHVAFKPTVAQQRKCPSCSETAVDGELVVMYD 267
>ref|NP_001001537.1| inter-alpha-trypsin inhibitor heavy chain H4 [Sus scrofa].
Length = 921
Score = 178 bits (452), Expect = 3e-45
Identities = 90/212 (42%), Positives = 133/212 (62%), Gaps = 1/212 (0%)
Frame = +2
Query: 311 DQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTK 490
+ + +YS V S ++SR A+TV+ ++VVN Q+ F + +PK AFI+NFSM +DG
Sbjct: 30 NDINIYSLTVDSKVSSRFAHTVVTSRVVNKGSAVQEATFQMELPKKAFITNFSMIIDGVT 89
Query: 491 FTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVK 670
+ +IKEK + Y A A+G++AGLVR+ E F+ V++AP AKV FEL Y+E+
Sbjct: 90 YPGNIKEKAAAQEQY-SAVARGESAGLVRATGRKTEQFQVAVSVAPAAKVTFELVYEELL 148
Query: 671 WRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTF-DGHFDGVPVVVKGQQK 847
R+LG YE + +QP +L KHL++D+ I EPQG+ FL TF + + + K
Sbjct: 149 ARHLGVYELLLKIQPQQLVKHLQMDIHIFEPQGISFLETESTFMTNELAEALTISQNKTK 208
Query: 848 AHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
AH+ FKPT++QQ+K P ET +DG +V YD
Sbjct: 209 AHIRFKPTLSQQQKSPEQQETVLDGNFIVRYD 240
>ref|NP_001193278.1| inter-alpha-trypsin inhibitor heavy chain H3 [Sus scrofa].
Length = 889
Score = 176 bits (446), Expect = 2e-44
Identities = 92/246 (37%), Positives = 147/246 (59%), Gaps = 2/246 (0%)
Frame = +2
Query: 212 LAELALGKFHVVPGNRRSQRSASGESGEMMEGVDQVTLYSYKVQSTITSRMANTVIQTKV 391
L+ LA+ F P + +RS G V+ + +YS KV ++SR A+ V+ T+
Sbjct: 14 LSSLAVSGFPRSPSRQLGKRSLPGAV------VNGIEVYSTKVSCKVSSRFAHNVVTTRA 67
Query: 392 VNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGL 571
VNH+ ++V FD+ +PK AFI+NF++T+DG + ++KEK V + Y +A ++ KTAGL
Sbjct: 68 VNHADTAKEVSFDVELPKTAFITNFTLTIDGVTYPGNVKEKEVAKKQYEKAVSQDKTAGL 127
Query: 572 VRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQ 751
V++ +E F VN+A G+KV FEL Y+E+ R+ G YE + +QP +L KH E+
Sbjct: 128 VKASGRKLEKFTVSVNVAAGSKVTFELTYEELLKRHKGKYEMYLKVQPKQLVKHFEITAD 187
Query: 752 IIEPQGLRFLHVLDTFDGHFDGVPVVVK--GQQKAHVAFKPTVAQQRKCPSCSETAVDGK 925
I EPQG+ L +F + + K +K HV+FKP++ QQR CP+C+++ + G
Sbjct: 188 IFEPQGISTLDAEASFITNDLLGSALTKSFSGKKGHVSFKPSLDQQRSCPTCTDSLLKGD 247
Query: 926 LVVMYD 943
++ YD
Sbjct: 248 FIITYD 253
>ref|NP_999089.1| inter-alpha-trypsin inhibitor heavy chain H1 precursor [Sus
scrofa].
Length = 902
Score = 159 bits (403), Expect = 2e-39
Identities = 85/216 (39%), Positives = 126/216 (58%), Gaps = 2/216 (0%)
Frame = +2
Query: 302 EGVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVD 481
+ V+ V + S KV +TSR A+ V+ ++VVN++ +P++V FD+ IPK AFIS+F++T D
Sbjct: 38 KAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNTNKPKEVAFDVEIPKTAFISDFAITAD 97
Query: 482 GTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQ 661
F IK+K Y +A G+ +GLVR+ ME F V I P +K F+L Y+
Sbjct: 98 ENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFTIHVTIGPRSKATFQLTYE 157
Query: 662 EVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVVVK-- 835
EV R L Y+ I ++P +L +H E+DV I EPQG+ L +F ++ K
Sbjct: 158 EVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSF 217
Query: 836 GQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+K HV F+PTV QQ+ C +CS T ++G V YD
Sbjct: 218 SGKKGHVLFRPTVGQQQSCSTCSTTLLNGDFKVTYD 253
>ref|XP_003130868.1| PREDICTED: inter-alpha-trypsin inhibitor heavy chain H5-like [Sus
scrofa].
Length = 944
Score = 97.1 bits (240), Expect = 1e-20
Identities = 69/219 (31%), Positives = 107/219 (48%), Gaps = 15/219 (6%)
Frame = +2
Query: 332 YKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFTSSI-- 505
+ V+STI SR A T + +++N + + Q+V F + IP AFI+NF+M + + I
Sbjct: 54 FSVKSTIISRYAFTTVSCRMLNRASKDQEVTFQMQIPAAAFITNFTMLIGNQVYQGEITE 113
Query: 506 -KEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWRNL 682
EK G+ + KTA + +M F+ V + K F L Y+E+ R L
Sbjct: 114 RDEKPGGQV----KEKRNKTAEDNGEKGTEM--FRASVVLPSKDKAAFFLSYEELLQRRL 167
Query: 683 GSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVL--------DTFDGHFDGVP----V 826
G YEH + ++P +L L V+V ++E G+ L VL + G D P V
Sbjct: 168 GKYEHVVSVRPQQLVGRLTVEVNVLERSGIAELEVLRLQNSRRKGSGSGEDDSGPPPSTV 227
Query: 827 VVKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ + AHV FKP+V QQ K ++ + G +V YD
Sbjct: 228 IHHNETFAHVVFKPSVVQQAK---IAQNGILGDFIVRYD 263
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,470,065
Number of extensions: 727476
Number of successful extensions: 2275
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2267
Number of HSP's successfully gapped: 5
Length of query: 315
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 216
Effective length of database: 8,879,129
Effective search space: 1917891864
Effective search space used: 1917891864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013829
(945 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034712.2| inter-alpha-trypsin inhibitor heavy chain H2 [M... 417 e-117
Alignment gi|NP_032433.2| inter-alpha-trypsin inhibitor heavy chain H3 pr... 179 4e-45
Alignment gi|NP_001152771.1| inter alpha-trypsin inhibitor, heavy chain 4... 169 3e-42
Alignment gi|NP_061216.2| inter alpha-trypsin inhibitor, heavy chain 4 is... 169 3e-42
Alignment gi|NP_032432.2| inter-alpha-trypsin inhibitor heavy chain H1 pr... 158 5e-39
Alignment gi|XP_003085348.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha ... 128 6e-30
Alignment gi|XP_003086909.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha ... 128 6e-30
Alignment gi|NP_766059.1| inter-alpha-trypsin inhibitor heavy chain H5 pr... 96 3e-20
>ref|NP_034712.2| inter-alpha-trypsin inhibitor heavy chain H2 [Mus musculus].
Length = 950
Score = 417 bits (1071), Expect = e-117
Identities = 211/278 (75%), Positives = 232/278 (83%)
Frame = +2
Query: 110 MKGLTCFLLCFLLSEAQGFEIPTNGLSEFAEYGDLAELALGKFHVVPGNRRSQRSASGES 289
M+ C L+ L EAQ FEIP NG SEFAEY DL ELA K V N R QRS ES
Sbjct: 5 MQRPVCLLIWLFLLEAQAFEIPINGNSEFAEYSDLVELAPDKLPFVQENGRHQRSLPEES 64
Query: 290 GEMMEGVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFS 469
GE + VD VTLYSYKVQSTITSR+A T IQ+K+VN+SP PQ VVFD+ IPKGAFISNF+
Sbjct: 65 GEETDTVDPVTLYSYKVQSTITSRVATTTIQSKLVNNSPLPQSVVFDVQIPKGAFISNFT 124
Query: 470 MTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFE 649
MTV+G FTSSIKEKTVGRALY QARAKGKTAG VRSR LDMENF TEVNI PGAKVQFE
Sbjct: 125 MTVNGMTFTSSIKEKTVGRALYSQARAKGKTAGWVRSRTLDMENFNTEVNIPPGAKVQFE 184
Query: 650 LHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVV 829
LHYQEVKWR LGSYEH+IHLQPG+LAKHLEV+V IIEPQG+RFLHV DTF+GHF GVPV+
Sbjct: 185 LHYQEVKWRKLGSYEHKIHLQPGKLAKHLEVNVWIIEPQGMRFLHVPDTFEGHFQGVPVI 244
Query: 830 VKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
KGQQKAHV+FKPTVAQQRKCP+C+ETAV+G+LVVMYD
Sbjct: 245 SKGQQKAHVSFKPTVAQQRKCPNCTETAVNGELVVMYD 282
>ref|NP_032433.2| inter-alpha-trypsin inhibitor heavy chain H3 precursor [Mus
musculus].
Length = 889
Score = 179 bits (453), Expect = 4e-45
Identities = 86/214 (40%), Positives = 137/214 (64%), Gaps = 2/214 (0%)
Frame = +2
Query: 308 VDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGT 487
VD + +YS K+ +TSR A+ V+ T+ VN + ++V FD+ +PK AFI+NF++T+DG
Sbjct: 40 VDGIEVYSTKISCKVTSRFAHNVVTTRAVNRADTAKEVSFDVELPKTAFITNFTLTIDGV 99
Query: 488 KFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEV 667
+ ++KEK V + Y +A ++GKTAGLV++ +E F VN+A G+KV FEL Y+E+
Sbjct: 100 TYPGNVKEKEVAQKQYEKAVSQGKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYEEL 159
Query: 668 KWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVVVK--GQ 841
RN G YE + +QP +L +H E+D I EPQG+ L +F + + K
Sbjct: 160 LKRNKGKYEMYLKVQPKQLVRHFEIDAHIFEPQGISMLDAEASFITNDLLGSALTKSFSG 219
Query: 842 QKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+K HV+FKP++ QQR CP+C+++ ++G ++YD
Sbjct: 220 KKGHVSFKPSLDQQRSCPTCTDSLLNGDFTIVYD 253
>ref|NP_001152771.1| inter alpha-trypsin inhibitor, heavy chain 4 isoform 2 [Mus
musculus].
Length = 941
Score = 169 bits (428), Expect = 3e-42
Identities = 82/210 (39%), Positives = 129/210 (61%), Gaps = 1/210 (0%)
Frame = +2
Query: 317 VTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFT 496
+ +YS V S ++SR A+TV+ ++VVN + Q+ F + +P+ AFI+NFSM +DG +
Sbjct: 33 IDIYSLTVDSRVSSRFAHTVVTSRVVNRADAVQEATFQVELPRKAFITNFSMIIDGVTYP 92
Query: 497 SSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWR 676
+KEK + Y A +G++AG+V++ E F+ VN+APG+K+ FEL YQE+ R
Sbjct: 93 GVVKEKAEAQKQYSAAVGRGESAGIVKTTGRQTEKFEVSVNVAPGSKITFELIYQELLQR 152
Query: 677 NLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTF-DGHFDGVPVVVKGQQKAH 853
LG YE + ++P +L KHL++D+ I EPQG+ L TF + + KAH
Sbjct: 153 RLGMYELLLKVRPQQLVKHLQMDIYIFEPQGISILETESTFMTPELANALTTSQNKTKAH 212
Query: 854 VAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ FKPT++QQ+K S +T ++G +V YD
Sbjct: 213 IRFKPTLSQQQKSQSEQDTVLNGDFIVRYD 242
>ref|NP_061216.2| inter alpha-trypsin inhibitor, heavy chain 4 isoform 1 [Mus
musculus].
Length = 942
Score = 169 bits (428), Expect = 3e-42
Identities = 82/210 (39%), Positives = 129/210 (61%), Gaps = 1/210 (0%)
Frame = +2
Query: 317 VTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFT 496
+ +YS V S ++SR A+TV+ ++VVN + Q+ F + +P+ AFI+NFSM +DG +
Sbjct: 33 IDIYSLTVDSRVSSRFAHTVVTSRVVNRADAVQEATFQVELPRKAFITNFSMIIDGVTYP 92
Query: 497 SSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWR 676
+KEK + Y A +G++AG+V++ E F+ VN+APG+K+ FEL YQE+ R
Sbjct: 93 GVVKEKAEAQKQYSAAVGRGESAGIVKTTGRQTEKFEVSVNVAPGSKITFELIYQELLQR 152
Query: 677 NLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTF-DGHFDGVPVVVKGQQKAH 853
LG YE + ++P +L KHL++D+ I EPQG+ L TF + + KAH
Sbjct: 153 RLGMYELLLKVRPQQLVKHLQMDIYIFEPQGISILETESTFMTPELANALTTSQNKTKAH 212
Query: 854 VAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ FKPT++QQ+K S +T ++G +V YD
Sbjct: 213 IRFKPTLSQQQKSQSEQDTVLNGDFIVRYD 242
>ref|NP_032432.2| inter-alpha-trypsin inhibitor heavy chain H1 precursor [Mus
musculus].
Length = 907
Score = 158 bits (400), Expect = 5e-39
Identities = 84/214 (39%), Positives = 128/214 (59%), Gaps = 2/214 (0%)
Frame = +2
Query: 308 VDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGT 487
V+ V++ S KV +TSR A+ VI ++VVN++ + ++V FD+ IPK AFIS+F++T DG
Sbjct: 45 VNGVSIKSLKVNCKVTSRFAHYVITSQVVNNADKAREVAFDVEIPKTAFISDFAITSDGK 104
Query: 488 KFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEV 667
F IK+K Y +A G++AGLVR+ +ME F + + +K F L Y+EV
Sbjct: 105 AFIGDIKDKVTAWKQYRKAAVLGESAGLVRASGRNMEQFTIHITVGAQSKATFRLTYEEV 164
Query: 668 KWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVVVK--GQ 841
R L Y+ I ++P +L +H E+DV I EPQG+ L +F + K
Sbjct: 165 LKRRLMQYDITIKVRPKQLVQHFEIDVDIFEPQGISKLDAQASFLSEELAAQTIKKSFSG 224
Query: 842 QKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+K HV F+PTV+QQ+ CP+CS + ++G+ V YD
Sbjct: 225 KKGHVLFRPTVSQQQSCPTCSTSLLNGEFKVTYD 258
>ref|XP_003085348.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha (globulin) inhibitor
H5-like, pseudogene [Mus musculus].
Length = 1321
Score = 128 bits (322), Expect = 6e-30
Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 11/221 (4%)
Frame = +2
Query: 314 QVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKF 493
++ + SY ++ST+ SR ANT++ + + N E + +FD+++P+ AFISNF+MT+D +
Sbjct: 34 KLLMMSYSIRSTVVSRYANTLVTSVLFNPHDEAHEAIFDLNLPRIAFISNFTMTIDDKIY 93
Query: 494 TSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKW 673
+ IKEK + +Y +A +GKTA V R + ENF+ +A G K F L Y+E+
Sbjct: 94 VAEIKEKHQAKKMYEKAYQQGKTAAHVGIRDRESENFRISTMLAAGTKATFALAYEELLQ 153
Query: 674 RNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHV-----------LDTFDGHFDGV 820
R+ G Y+ + L+PG+L + L V++ + E G+ ++H+ T +G
Sbjct: 154 RHQGRYQLVVGLRPGQLVRKLNVEITVSERTGIAYVHIPPLRTSQVCTNNQTSEGDLPPS 213
Query: 821 PVVVKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ +G+ H+ F PT+ Q + S + + + YD
Sbjct: 214 TRIQRGETCVHITFSPTLRDQ---SAFSSSGIMADFTIHYD 251
>ref|XP_003086909.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha (globulin) inhibitor
H5-like, pseudogene [Mus musculus].
Length = 1321
Score = 128 bits (322), Expect = 6e-30
Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 11/221 (4%)
Frame = +2
Query: 314 QVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKF 493
++ + SY ++ST+ SR ANT++ + + N E + +FD+++P+ AFISNF+MT+D +
Sbjct: 34 KLLMMSYSIRSTVVSRYANTLVTSVLFNPHDEAHEAIFDLNLPRIAFISNFTMTIDDKIY 93
Query: 494 TSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKW 673
+ IKEK + +Y +A +GKTA V R + ENF+ +A G K F L Y+E+
Sbjct: 94 VAEIKEKHQAKKMYEKAYQQGKTAAHVGIRDRESENFRISTMLAAGTKATFALAYEELLQ 153
Query: 674 RNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHV-----------LDTFDGHFDGV 820
R+ G Y+ + L+PG+L + L V++ + E G+ ++H+ T +G
Sbjct: 154 RHQGRYQLVVGLRPGQLVRKLNVEITVSERTGIAYVHIPPLRTSQVCTNNQTSEGDLPPS 213
Query: 821 PVVVKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ +G+ H+ F PT+ Q + S + + + YD
Sbjct: 214 TRIQRGETCVHITFSPTLRDQ---SAFSSSGIMADFTIHYD 251
>ref|NP_766059.1| inter-alpha-trypsin inhibitor heavy chain H5 precursor [Mus
musculus].
Length = 952
Score = 96.3 bits (238), Expect = 3e-20
Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 12/216 (5%)
Frame = +2
Query: 332 YKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFTSSIKE 511
+ V+STI SR A T + +++N + E Q+ F + IP+ AFI+NF+M + + + I +
Sbjct: 54 FSVKSTIISRYAFTTVSCRMLNRASEDQEAEFQMQIPESAFITNFTMLIGDSVYRGEITQ 113
Query: 512 KTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWRNLGSY 691
K + + + + +T+ DM FK + I K F L Y+E+ R LG Y
Sbjct: 114 KDKKSSESVKDK-RNRTSDDNEENGSDM--FKASLVIPSKDKAAFFLSYEELLQRRLGKY 170
Query: 692 EHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDG------------VPVVVK 835
EH I ++P +L L V+V I+E G+ L VL + G ++ +
Sbjct: 171 EHSISVRPQQLVGRLTVEVDILERSGITSLEVLPLHNSRKKGSGKAEGDVGPPPSTLINQ 230
Query: 836 GQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ A V FKPTV QQ K ++ + G +V YD
Sbjct: 231 NETFAKVIFKPTVVQQAK---IAQNGILGDFIVRYD 263
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,337,399
Number of extensions: 972204
Number of successful extensions: 3025
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3013
Number of HSP's successfully gapped: 8
Length of query: 315
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 214
Effective length of database: 12,583,923
Effective search space: 2692959522
Effective search space used: 2692959522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013829
(945 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002207.2| inter-alpha-trypsin inhibitor heavy chain H2 [H... 457 e-129
Alignment gi|NP_001159921.1| inter-alpha-trypsin inhibitor heavy chain H4... 182 3e-46
Alignment gi|NP_002209.2| inter-alpha-trypsin inhibitor heavy chain H4 is... 182 3e-46
Alignment gi|NP_002208.3| inter-alpha-trypsin inhibitor heavy chain H3 pr... 175 5e-44
Alignment gi|NP_002206.2| inter-alpha-trypsin inhibitor heavy chain H1 is... 162 3e-40
Alignment gi|NP_940912.1| inter-alpha-trypsin inhibitor heavy chain H5-li... 120 2e-27
Alignment gi|NP_085046.5| inter-alpha-trypsin inhibitor heavy chain H5 is... 98 1e-20
Alignment gi|NP_001001851.1| inter-alpha-trypsin inhibitor heavy chain H5... 98 1e-20
Alignment gi|NP_001159906.1| inter-alpha-trypsin inhibitor heavy chain H1... 87 2e-17
>ref|NP_002207.2| inter-alpha-trypsin inhibitor heavy chain H2 [Homo sapiens].
Length = 946
Score = 457 bits (1177), Expect = e-129
Identities = 227/278 (81%), Positives = 246/278 (88%)
Frame = +2
Query: 110 MKGLTCFLLCFLLSEAQGFEIPTNGLSEFAEYGDLAELALGKFHVVPGNRRSQRSASGES 289
MK LTCF +CF LSE GFEIP NGLSEF +Y DL ELA GKF +V NRR QRS GES
Sbjct: 1 MKRLTCFFICFFLSEVSGFEIPINGLSEFVDYEDLVELAPGKFQLVAENRRYQRSLPGES 60
Query: 290 GEMMEGVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFS 469
EMME VDQVTLYSYKVQSTITSRMA T+IQ+KVVN+SP+PQ+VVFD+ IPKGAFISNFS
Sbjct: 61 EEMMEEVDQVTLYSYKVQSTITSRMATTMIQSKVVNNSPQPQNVVFDVQIPKGAFISNFS 120
Query: 470 MTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFE 649
MTVDG F SSIKEKTVGRALY QARAKGKTAGLVRS ALDMENF+TEVN+ PGAKVQFE
Sbjct: 121 MTVDGKTFRSSIKEKTVGRALYAQARAKGKTAGLVRSSALDMENFRTEVNVLPGAKVQFE 180
Query: 650 LHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVV 829
LHYQEVKWR LGSYEHRI+LQPGRLAKHLEVDV +IEPQGLRFLHV DTF+GHFDGVPV+
Sbjct: 181 LHYQEVKWRKLGSYEHRIYLQPGRLAKHLEVDVWVIEPQGLRFLHVPDTFEGHFDGVPVI 240
Query: 830 VKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
KGQQKAHV+FKPTVAQQR CP+C ETAVDG+LVV+YD
Sbjct: 241 SKGQQKAHVSFKPTVAQQRICPNCRETAVDGELVVLYD 278
>ref|NP_001159921.1| inter-alpha-trypsin inhibitor heavy chain H4 isoform 2 precursor
[Homo sapiens].
Length = 900
Score = 182 bits (463), Expect = 3e-46
Identities = 91/210 (43%), Positives = 134/210 (63%), Gaps = 1/210 (0%)
Frame = +2
Query: 317 VTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFT 496
+ +YS V S ++SR A+TV+ ++VVN + Q+ F + +PK AFI+NFSM +DG +
Sbjct: 33 IDIYSLTVDSRVSSRFAHTVVTSRVVNRANTVQEATFQMELPKKAFITNFSMIIDGMTYP 92
Query: 497 SSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWR 676
IKEK +A Y A AKGK+AGLV++ +ME F+ V++AP AK+ FEL Y+E+ R
Sbjct: 93 GIIKEKAEAQAQYSAAVAKGKSAGLVKATGRNMEQFQVSVSVAPNAKITFELVYEELLKR 152
Query: 677 NLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTF-DGHFDGVPVVVKGQQKAH 853
LG YE + ++P +L KHL++D+ I EPQG+ FL TF + + KAH
Sbjct: 153 RLGVYELLLKVRPQQLVKHLQMDIHIFEPQGISFLETESTFMTNQLVDALTTWQNKTKAH 212
Query: 854 VAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ FKPT++QQ+K P ET +DG L++ YD
Sbjct: 213 IRFKPTLSQQQKSPEQQETVLDGNLIIRYD 242
>ref|NP_002209.2| inter-alpha-trypsin inhibitor heavy chain H4 isoform 1 precursor
[Homo sapiens].
Length = 930
Score = 182 bits (463), Expect = 3e-46
Identities = 91/210 (43%), Positives = 134/210 (63%), Gaps = 1/210 (0%)
Frame = +2
Query: 317 VTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFT 496
+ +YS V S ++SR A+TV+ ++VVN + Q+ F + +PK AFI+NFSM +DG +
Sbjct: 33 IDIYSLTVDSRVSSRFAHTVVTSRVVNRANTVQEATFQMELPKKAFITNFSMIIDGMTYP 92
Query: 497 SSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWR 676
IKEK +A Y A AKGK+AGLV++ +ME F+ V++AP AK+ FEL Y+E+ R
Sbjct: 93 GIIKEKAEAQAQYSAAVAKGKSAGLVKATGRNMEQFQVSVSVAPNAKITFELVYEELLKR 152
Query: 677 NLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTF-DGHFDGVPVVVKGQQKAH 853
LG YE + ++P +L KHL++D+ I EPQG+ FL TF + + KAH
Sbjct: 153 RLGVYELLLKVRPQQLVKHLQMDIHIFEPQGISFLETESTFMTNQLVDALTTWQNKTKAH 212
Query: 854 VAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ FKPT++QQ+K P ET +DG L++ YD
Sbjct: 213 IRFKPTLSQQQKSPEQQETVLDGNLIIRYD 242
>ref|NP_002208.3| inter-alpha-trypsin inhibitor heavy chain H3 preproprotein [Homo
sapiens].
Length = 890
Score = 175 bits (444), Expect = 5e-44
Identities = 94/247 (38%), Positives = 149/247 (60%), Gaps = 3/247 (1%)
Frame = +2
Query: 212 LAELALGKFHVVPGNRRSQRSASGESGEMMEGV-DQVTLYSYKVQSTITSRMANTVIQTK 388
L+ LA F P +RS + EGV + + +YS K+ S +TSR A+ V+ +
Sbjct: 14 LSSLAASGFPRSPFRLLGKRS-------LPEGVANGIEVYSTKINSKVTSRFAHNVVTMR 66
Query: 389 VVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFTSSIKEKTVGRALYWQARAKGKTAG 568
VN + ++V FD+ +PK AFI+NF++T+DG + ++KEK V + Y +A ++GKTAG
Sbjct: 67 AVNRADTAKEVSFDVELPKTAFITNFTLTIDGVTYPGNVKEKEVAKKQYEKAVSQGKTAG 126
Query: 569 LVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDV 748
LV++ +E F VN+A G+KV FEL Y+E+ R+ G YE + +QP +L KH E++V
Sbjct: 127 LVKASGRKLEKFTVSVNVAAGSKVTFELTYEELLKRHKGKYEMYLKVQPKQLVKHFEIEV 186
Query: 749 QIIEPQGLRFLHVLDTFDGHFDGVPVVVK--GQQKAHVAFKPTVAQQRKCPSCSETAVDG 922
I EPQG+ L +F + + K +K HV+FKP++ QQR CP+C+++ ++G
Sbjct: 187 DIFEPQGISMLDAEASFITNDLLGSALTKSFSGKKGHVSFKPSLDQQRSCPTCTDSLLNG 246
Query: 923 KLVVMYD 943
+ YD
Sbjct: 247 DFTITYD 253
>ref|NP_002206.2| inter-alpha-trypsin inhibitor heavy chain H1 isoform a [Homo
sapiens].
Length = 911
Score = 162 bits (411), Expect = 3e-40
Identities = 92/228 (40%), Positives = 132/228 (57%), Gaps = 3/228 (1%)
Frame = +2
Query: 269 RSASGESGEMME-GVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPK 445
RS S E + ++ VD V + S KV +TSR A+ V+ ++VVN + E ++V FD+ IPK
Sbjct: 34 RSKSSEKRQAVDTAVDGVFIRSLKVNCKVTSRFAHYVVTSQVVNTANEAREVAFDLEIPK 93
Query: 446 GAFISNFSMTVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIA 625
AFIS+F++T DG F IK+K Y +A G+ AGLVR+ ME F + +
Sbjct: 94 TAFISDFAVTADGNAFIGDIKDKVTAWKQYRKAAISGENAGLVRASGRTMEQFTIHLTVN 153
Query: 626 PGAKVQFELHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDG 805
P +KV F+L Y+EV RN YE I ++P +L H E+DV I EPQG+ L +F
Sbjct: 154 PQSKVTFQLTYEEVLKRNHMQYEIVIKVKPKQLVHHFEIDVDIFEPQGISKLDAQASFLP 213
Query: 806 HFDGVPVVVK--GQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ K +K HV F+PTV+QQ+ CP+CS + ++G V YD
Sbjct: 214 KELAAQTIKKSFSGKKGHVLFRPTVSQQQSCPTCSTSLLNGHFKVTYD 261
>ref|NP_940912.1| inter-alpha-trypsin inhibitor heavy chain H5-like protein precursor
[Homo sapiens].
Length = 1313
Score = 120 bits (300), Expect = 2e-27
Identities = 66/221 (29%), Positives = 119/221 (53%), Gaps = 11/221 (4%)
Frame = +2
Query: 314 QVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKF 493
++ + SY ++ST+ SR A+T++ + + N E + +FD+ +P AFISNF+MT++ +
Sbjct: 34 KLLMTSYSMRSTVVSRYAHTLVTSVLFNPHAEAHEAIFDLDLPHLAFISNFTMTINNKVY 93
Query: 494 TSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKW 673
+ +KEK + +Y +A +GKTA V R + E F+ ++A G +V F L Y+E+
Sbjct: 94 IAEVKEKHQAKKIYEEAHQQGKTAAHVGIRDRESEKFRISTSLAAGTEVTFSLAYEELLQ 153
Query: 674 RNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHF---------DGVPV 826
R+ G Y+ + L+PG+L K L ++V + E G+ ++H+ G D P
Sbjct: 154 RHQGQYQLVVSLRPGQLVKRLSIEVTVSERTGISYVHIPPLRTGRLRTNAHASEVDSPPS 213
Query: 827 --VVKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ +G+ + + PT+ Q S S + + +V YD
Sbjct: 214 TRIERGETCVRITYCPTLQDQ---SSISGSGIMADFLVQYD 251
>ref|NP_085046.5| inter-alpha-trypsin inhibitor heavy chain H5 isoform 1 precursor
[Homo sapiens].
Length = 942
Score = 98.2 bits (243), Expect = 1e-20
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 14/218 (6%)
Frame = +2
Query: 332 YKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFTSSI-- 505
+ V+STI SR A T + +++N + E QD+ F + IP AFI+NF+M + + I
Sbjct: 54 FSVKSTIISRYAFTTVSCRMLNRASEDQDIEFQMQIPAAAFITNFTMLIGDKVYQGEITE 113
Query: 506 KEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWRNLG 685
+EK G + + KT + E F+ I K F L Y+E+ R LG
Sbjct: 114 REKKSGDRV---KEKRNKTT--EENGEKGTEIFRASAVIPSKDKAAFFLSYEELLQRRLG 168
Query: 686 SYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFD--------GHFDGVP----VV 829
YEH I ++P +L+ L VDV I+E G+ L VL + G D P V+
Sbjct: 169 KYEHSISVRPQQLSGRLSVDVNILESAGIASLEVLPLHNSRQRGSGRGEDDSGPPPSTVI 228
Query: 830 VKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ + A++ FKPTV QQ + ++ + G ++ YD
Sbjct: 229 NQNETFANIIFKPTVVQQAR---IAQNGILGDFIIRYD 263
>ref|NP_001001851.1| inter-alpha-trypsin inhibitor heavy chain H5 isoform 3 precursor
[Homo sapiens].
Length = 702
Score = 98.2 bits (243), Expect = 1e-20
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 14/218 (6%)
Frame = +2
Query: 332 YKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIHIPKGAFISNFSMTVDGTKFTSSI-- 505
+ V+STI SR A T + +++N + E QD+ F + IP AFI+NF+M + + I
Sbjct: 54 FSVKSTIISRYAFTTVSCRMLNRASEDQDIEFQMQIPAAAFITNFTMLIGDKVYQGEITE 113
Query: 506 KEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFELHYQEVKWRNLG 685
+EK G + + KT + E F+ I K F L Y+E+ R LG
Sbjct: 114 REKKSGDRV---KEKRNKTT--EENGEKGTEIFRASAVIPSKDKAAFFLSYEELLQRRLG 168
Query: 686 SYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFD--------GHFDGVP----VV 829
YEH I ++P +L+ L VDV I+E G+ L VL + G D P V+
Sbjct: 169 KYEHSISVRPQQLSGRLSVDVNILESAGIASLEVLPLHNSRQRGSGRGEDDSGPPPSTVI 228
Query: 830 VKGQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
+ + A++ FKPTV QQ + ++ + G ++ YD
Sbjct: 229 NQNETFANIIFKPTVVQQAR---IAQNGILGDFIIRYD 263
>ref|NP_001159906.1| inter-alpha-trypsin inhibitor heavy chain H1 isoform b [Homo
sapiens].
Length = 769
Score = 87.0 bits (214), Expect = 2e-17
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Frame = +2
Query: 593 MENFKTEVNIAPGAKVQFELHYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGL 772
ME F + + P +KV F+L Y+EV RN YE I ++P +L H E+DV I EPQG+
Sbjct: 1 MEQFTIHLTVNPQSKVTFQLTYEEVLKRNHMQYEIVIKVKPKQLVHHFEIDVDIFEPQGI 60
Query: 773 RFLHVLDTFDGHFDGVPVVVK--GQQKAHVAFKPTVAQQRKCPSCSETAVDGKLVVMYD 943
L +F + K +K HV F+PTV+QQ+ CP+CS + ++G V YD
Sbjct: 61 SKLDAQASFLPKELAAQTIKKSFSGKKGHVLFRPTVSQQQSCPTCSTSLLNGHFKVTYD 119
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,533,108
Number of extensions: 1159156
Number of successful extensions: 3397
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3390
Number of HSP's successfully gapped: 9
Length of query: 315
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,934,836
Effective search space: 3181120068
Effective search space used: 3181120068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013829
(945 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 367 7e-99
>Sscrofa_Chr10
|| Length = 79102373
Score = 367 bits (185), Expect = 7e-99
Identities = 191/193 (98%)
Strand = Plus / Minus
Query: 1 gagatgaagttggtctttttcaaagccaaccgcaaggctctcttgtcccccgaacgtggg 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 69752071 gagatgaagttggtctttttcaaagccaaccacaaggctctcttgtcccccgaacgtggg 69752012
Query: 61 acagcagagggaccctgggctggagagctgggcagagcctccgaggacaatgaaggggct 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69752011 acagcagaggaaccctgggctggagagctgggcagagcctccgaggacaatgaaggggct 69751952
Query: 121 cacgtgctttctcctctgctttcttctttcggaagcgcagggcttcgaaatccccaccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69751951 cacgtgctttctcctctgctttcttctttcggaagcgcagggcttcgaaatccccaccaa 69751892
Query: 181 tggactttcagaa 193
|||||||||||||
Sbjct: 69751891 tggactttcagaa 69751879
Score = 331 bits (167), Expect = 4e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 575 aggagccgagctctcgatatggagaacttcaaaaccgaagtgaacatcgcccctggagcc 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69739958 aggagccgagctctcgatatggagaacttcaaaaccgaagtgaacatcgcccctggagcc 69739899
Query: 635 aaggtgcagtttgaacttcattaccaggaagtgaagtggaggaacctggggtcctatgag 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69739898 aaggtgcagtttgaacttcattaccaggaagtgaagtggaggaacctggggtcctatgag 69739839
Query: 695 cacaggatccacctgcagccgggacgactggccaagcacctggaggt 741
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69739838 cacaggatccacctgcagccgggacgactggccaagcacctggaggt 69739792
Score = 325 bits (164), Expect = 3e-86
Identities = 170/172 (98%)
Strand = Plus / Minus
Query: 301 ggaaggtgtggatcaagtcactctttacagctataaagttcagtctactattacgtctcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69745700 ggaaggtgtggatcaagtcactctttacagctataaagttcagtctactattacgtctcg 69745641
Query: 361 aatggccaacaccgtcatccagaccaaagtggtgaaccactccccggagcctcaggatgt 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 69745640 aatggccaacaccgtcatccagaccaaagtggtgaaccactccccagagcctcaggatgt 69745581
Query: 421 tgtgtttgatattcacatccccaaaggagccttcatctccaacttctccatg 472
||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 69745580 tgtgtttgatattcagatccccaaaggagccttcatctccaacttctccatg 69745529
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 738 aggtagatgtgcagattattgaacctcagggattaagatttctccatgttctggacacat 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69738375 aggtagatgtgcagattattgaacctcagggattaagatttctccatgttctggacacat 69738316
Query: 798 tcgacgggcatttcgatggagttccagtcgtcgttaaaggacagcagaagg 848
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69738315 tcgacgggcatttcgatggagttccagtcgtcgttaaaggacagcagaagg 69738265
Score = 202 bits (102), Expect = 2e-49
Identities = 105/106 (99%)
Strand = Plus / Minus
Query: 472 gactgtggacggcaccaagtttaccagttccattaaggagaaaactgtgggccgcgccct 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69742440 gactgtggacggcaccaagtttaccagttccattaaggagaaaactgtgggccgcgccct 69742381
Query: 532 ctactggcaggcgagagcaaaaggcaaaacagctggactggtgagg 577
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 69742380 ctactggcaggcgagagcaaaaggcaaaacagctggattggtgagg 69742335
Score = 190 bits (96), Expect = 1e-45
Identities = 99/100 (99%)
Strand = Plus / Minus
Query: 846 aggcacacgtggccttcaagcccacagtggcacagcagagaaaatgccccagctgctctg 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69737610 aggcacacgtggccttcaagcccacagtggcacagcagagaaaatgccccagctgctctg 69737551
Query: 906 agacggccgtggacggaaagctggtggtgatgtatgatgt 945
||||||||||||||||| ||||||||||||||||||||||
Sbjct: 69737550 agacggccgtggacggagagctggtggtgatgtatgatgt 69737511
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 194 tttgcagaatatggagatcttgcggaactggccctgggcaaatttcacgttgtgccagga 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69750144 tttgcagaatatggagatcttgcggaactggccctgggcaaatttcacgttgtgccagga 69750085
Query: 254 aaccggaggtctcag 268
|||||||||||||||
Sbjct: 69750084 aaccggaggtctcag 69750070
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 266 cagagaagtgcttctggagaatctggagaaatgatgg 302
|||||||||||||||||||||||||||||||||||||
Sbjct: 69748186 cagagaagtgcttctggagaatctggagaaatgatgg 69748150
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,157,175
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 8
Length of query: 945
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 924
Effective length of database: 2,808,413,156
Effective search space: 2594973756144
Effective search space used: 2594973756144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)