Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013833
(881 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547294.2| PREDICTED: similar to FUS interacting protein (... 228 7e-60
Alignment gi|XP_532229.2| PREDICTED: similar to 35 kDa SR repressor prote... 150 2e-36
Alignment gi|XP_866428.1| PREDICTED: similar to FUS interacting protein (... 122 4e-28
Alignment gi|XP_866416.1| PREDICTED: similar to FUS interacting protein (... 122 4e-28
Alignment gi|XP_866404.1| PREDICTED: similar to FUS interacting protein (... 122 4e-28
Alignment gi|XP_866383.1| PREDICTED: similar to FUS interacting protein (... 122 4e-28
Alignment gi|XP_852806.1| PREDICTED: similar to FUS interacting protein (... 122 4e-28
Alignment gi|XP_857772.1| PREDICTED: similar to Splicing factor, arginine... 78 1e-14
Alignment gi|XP_857729.1| PREDICTED: similar to Splicing factor, arginine... 78 1e-14
Alignment gi|XP_857688.1| PREDICTED: similar to Splicing factor, arginine... 78 1e-14
>ref|XP_547294.2| PREDICTED: similar to FUS interacting protein (serine-arginine
rich) 1 [Canis familiaris].
Length = 217
Score = 228 bits (580), Expect(2) = 7e-60
Identities = 117/177 (66%), Positives = 119/177 (67%)
Frame = +3
Query: 141 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 320
PPNTSLFVRNVAD+TRSEDL REFGRYGPIVDVYVPLDFYTR PRGFAYVQFEDVRDAED
Sbjct: 41 PPNTSLFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAED 100
Query: 321 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVXXXXXXXXXXXXXXXXXXXXXX 500
ALHNLDRKWICGRQIEIQFAQGD+KTPNQMKAKEGRNV
Sbjct: 101 ALHNLDRKWICGRQIEIQFAQGDQKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSQSYER 160
Query: 501 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNDRPNCSWNTQYSSAYYTSRKI 671
DNDRPNCSWNTQYSSAYYTSRKI
Sbjct: 161 RRSRSRSFDYNNRRSYSPRNSRPAGRPQRSRSHSDNDRPNCSWNTQYSSAYYTSRKI 217
Score = 21.9 bits (45), Expect(2) = 7e-60
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 94 VSVLRLTPQSCLGICVPP 147
V + RLT SC C PP
Sbjct: 24 VPLPRLTSPSCPATCAPP 41
>ref|XP_532229.2| PREDICTED: similar to 35 kDa SR repressor protein (SRrp35) [Canis
familiaris].
Length = 326
Score = 150 bits (379), Expect = 2e-36
Identities = 72/87 (82%), Positives = 77/87 (88%), Gaps = 8/87 (9%)
Frame = +3
Query: 186 RSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ--------FEDVRDAEDALHNLDR 341
R EDLRREFGRYGPIVDVY+PLDFYTRRPRGFAYVQ FEDVRDAEDAL+NL+R
Sbjct: 79 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPLFSLVIFEDVRDAEDALYNLNR 138
Query: 342 KWICGRQIEIQFAQGDRKTPNQMKAKE 422
KW+CGRQIEIQFAQGDRKTP QMK+KE
Sbjct: 139 KWVCGRQIEIQFAQGDRKTPGQMKSKE 165
>ref|XP_866428.1| PREDICTED: similar to FUS interacting protein (serine-arginine
rich) 1 isoform 6 [Canis familiaris].
Length = 97
Score = 122 bits (306), Expect = 4e-28
Identities = 57/58 (98%), Positives = 58/58 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ+
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQY 58
>ref|XP_866416.1| PREDICTED: similar to FUS interacting protein (serine-arginine
rich) 1 isoform 5 [Canis familiaris].
Length = 97
Score = 122 bits (306), Expect = 4e-28
Identities = 57/58 (98%), Positives = 58/58 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ+
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQY 58
>ref|XP_866404.1| PREDICTED: similar to FUS interacting protein (serine-arginine
rich) 1 isoform 4 [Canis familiaris].
Length = 97
Score = 122 bits (306), Expect = 4e-28
Identities = 57/58 (98%), Positives = 58/58 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ+
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQY 58
>ref|XP_866383.1| PREDICTED: similar to FUS interacting protein (serine-arginine
rich) 1 isoform 2 [Canis familiaris].
Length = 97
Score = 122 bits (306), Expect = 4e-28
Identities = 57/58 (98%), Positives = 58/58 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ+
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQY 58
>ref|XP_852806.1| PREDICTED: similar to FUS interacting protein (serine-arginine
rich) 1 isoform 1 [Canis familiaris].
Length = 97
Score = 122 bits (306), Expect = 4e-28
Identities = 57/58 (98%), Positives = 58/58 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ+
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQY 58
>ref|XP_857772.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 2
(Splicing factor SC35) (SC-35) (Splicing component, 35
kDa) isoform 5 [Canis familiaris].
Length = 221
Score = 78.2 bits (191), Expect = 1e-14
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Frame = +3
Query: 132 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
Y RPP TSL V N+ T + LRR F +YG + DVY+P D YT+ RGFA+V+F
Sbjct: 3 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
Query: 297 EDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 425
D RDAEDA+ +D + GR++ +Q A+ R P+ ++ G
Sbjct: 63 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGR-PPDSHHSRRG 104
>ref|XP_857729.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 2
(Splicing factor SC35) (SC-35) (Splicing component, 35
kDa) isoform 4 [Canis familiaris].
Length = 221
Score = 78.2 bits (191), Expect = 1e-14
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Frame = +3
Query: 132 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
Y RPP TSL V N+ T + LRR F +YG + DVY+P D YT+ RGFA+V+F
Sbjct: 3 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
Query: 297 EDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 425
D RDAEDA+ +D + GR++ +Q A+ R P+ ++ G
Sbjct: 63 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGR-PPDSHHSRRG 104
>ref|XP_857688.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 2
(Splicing factor SC35) (SC-35) (Splicing component, 35
kDa) isoform 3 [Canis familiaris].
Length = 221
Score = 78.2 bits (191), Expect = 1e-14
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Frame = +3
Query: 132 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
Y RPP TSL V N+ T + LRR F +YG + DVY+P D YT+ RGFA+V+F
Sbjct: 3 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
Query: 297 EDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 425
D RDAEDA+ +D + GR++ +Q A+ R P+ ++ G
Sbjct: 63 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGR-PPDSHHSRRG 104
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,116,967
Number of extensions: 729984
Number of successful extensions: 3258
Number of sequences better than 1.0e-05: 151
Number of HSP's gapped: 3198
Number of HSP's successfully gapped: 177
Length of query: 293
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 191
Effective length of database: 15,474,232
Effective search space: 2955578312
Effective search space used: 2955578312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013833
(881 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071594.1| splicing factor, arginine/serine-rich 13A [B... 218 6e-57
Alignment gi|XP_002695876.1| PREDICTED: FUS interacting protein (serine-a... 213 2e-55
Alignment gi|XP_001250667.1| PREDICTED: FUS interacting protein (serine-a... 213 2e-55
Alignment gi|XP_002690241.1| PREDICTED: serine-arginine repressor protein... 187 8e-48
Alignment gi|XP_001788719.1| PREDICTED: serine-arginine repressor protein... 187 8e-48
Alignment gi|NP_001029490.1| serine/arginine-rich splicing factor 2 [Bos ... 78 9e-15
Alignment gi|NP_001029872.1| serine/arginine-rich splicing factor 3 [Bos ... 72 6e-13
Alignment gi|XP_002687868.1| PREDICTED: splicing factor, arginine/serine-... 72 6e-13
Alignment gi|XP_001790217.1| PREDICTED: splicing factor, arginine/serine-... 72 6e-13
Alignment gi|NP_001029449.1| serine/arginine-rich splicing factor 7 [Bos ... 69 5e-12
>ref|NP_001071594.1| splicing factor, arginine/serine-rich 13A [Bos taurus].
Length = 182
Score = 218 bits (555), Expect = 6e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
Score = 55.5 bits (132), Expect = 6e-08
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +3
Query: 603 DNDRPNCSWNTQYSSAYYTSRKI 671
DNDRPNCSWNTQYSSAYYTSRKI
Sbjct: 160 DNDRPNCSWNTQYSSAYYTSRKI 182
>ref|XP_002695876.1| PREDICTED: FUS interacting protein (serine-arginine rich) 1-like
[Bos taurus].
Length = 262
Score = 213 bits (542), Expect = 2e-55
Identities = 103/104 (99%), Positives = 103/104 (99%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRK ICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKCICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>ref|XP_001250667.1| PREDICTED: FUS interacting protein (serine-arginine rich) 1 [Bos
taurus].
Length = 262
Score = 213 bits (542), Expect = 2e-55
Identities = 103/104 (99%), Positives = 103/104 (99%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRK ICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKCICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>ref|XP_002690241.1| PREDICTED: serine-arginine repressor protein (35kDa) (SRrp35)-like
[Bos taurus].
Length = 268
Score = 187 bits (476), Expect = 8e-48
Identities = 91/107 (85%), Positives = 96/107 (89%), Gaps = 7/107 (6%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ--- 293
MSRY RPPNTSLFVRNVAD TR EDLRREFGRYGPIVDVY+PLDFYTRRPRGFAYVQ
Sbjct: 1 MSRYTRPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPL 60
Query: 294 ----FEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 422
FEDVRDAEDAL+NL+RKW+CGRQIEIQFAQGDRKTP QMK+KE
Sbjct: 61 FYFIFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE 107
>ref|XP_001788719.1| PREDICTED: serine-arginine repressor protein, partial [Bos taurus].
Length = 145
Score = 187 bits (476), Expect = 8e-48
Identities = 91/107 (85%), Positives = 96/107 (89%), Gaps = 7/107 (6%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ--- 293
MSRY RPPNTSLFVRNVAD TR EDLRREFGRYGPIVDVY+PLDFYTRRPRGFAYVQ
Sbjct: 1 MSRYTRPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQYPL 60
Query: 294 ----FEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 422
FEDVRDAEDAL+NL+RKW+CGRQIEIQFAQGDRKTP QMK+KE
Sbjct: 61 FYFIFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE 107
>ref|NP_001029490.1| serine/arginine-rich splicing factor 2 [Bos taurus].
Length = 221
Score = 78.2 bits (191), Expect = 9e-15
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Frame = +3
Query: 132 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
Y RPP TSL V N+ T + LRR F +YG + DVY+P D YT+ RGFA+V+F
Sbjct: 3 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
Query: 297 EDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 425
D RDAEDA+ +D + GR++ +Q A+ R P+ ++ G
Sbjct: 63 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGR-PPDSHHSRRG 104
>ref|NP_001029872.1| serine/arginine-rich splicing factor 3 [Bos taurus].
Length = 164
Score = 72.0 bits (175), Expect = 6e-13
Identities = 34/95 (35%), Positives = 58/95 (61%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQ 407
RDA DA+ LD + +CG ++ ++ + G++++ N+
Sbjct: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNR 90
>ref|XP_002687868.1| PREDICTED: splicing factor, arginine/serine-rich 3-like [Bos
taurus].
Length = 164
Score = 72.0 bits (175), Expect = 6e-13
Identities = 34/95 (35%), Positives = 58/95 (61%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQ 407
RDA DA+ LD + +CG ++ ++ + G++++ N+
Sbjct: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNR 90
>ref|XP_001790217.1| PREDICTED: splicing factor, arginine/serine-rich 3 [Bos taurus].
Length = 164
Score = 72.0 bits (175), Expect = 6e-13
Identities = 34/95 (35%), Positives = 58/95 (61%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQ 407
RDA DA+ LD + +CG ++ ++ + G++++ N+
Sbjct: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNR 90
>ref|NP_001029449.1| serine/arginine-rich splicing factor 7 [Bos taurus].
Length = 235
Score = 68.9 bits (167), Expect = 5e-12
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 123 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 299
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
Query: 300 DVRDAEDALHNLDRKWICGRQIEIQFAQG 386
D RDAEDA+ LD K ICG ++ ++ + G
Sbjct: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTG 84
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,698,298
Number of extensions: 703851
Number of successful extensions: 2431
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 2410
Number of HSP's successfully gapped: 52
Length of query: 293
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 192
Effective length of database: 14,339,486
Effective search space: 2753181312
Effective search space used: 2753181312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013833
(881 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182527.1| splicing factor, arginine/serine-rich 13B [S... 194 4e-50
Alignment gi|XP_003361166.1| PREDICTED: serine/arginine-rich splicing fac... 192 2e-49
Alignment gi|NP_001070697.1| serine/arginine-rich splicing factor 2 [Sus ... 78 6e-15
Alignment gi|XP_003361690.1| PREDICTED: serine/arginine-rich splicing fac... 72 4e-13
Alignment gi|XP_003128414.1| PREDICTED: serine/arginine-rich splicing fac... 72 4e-13
Alignment gi|XP_003125259.1| PREDICTED: serine/arginine-rich splicing fac... 69 3e-12
Alignment gi|XP_003125258.1| PREDICTED: serine/arginine-rich splicing fac... 69 3e-12
Alignment gi|NP_001070689.1| transformer-2 protein homolog beta [Sus scro... 63 2e-10
Alignment gi|XP_003354018.1| PREDICTED: cold-inducible RNA-binding protei... 63 2e-10
Alignment gi|XP_003354017.1| PREDICTED: cold-inducible RNA-binding protei... 63 2e-10
>ref|NP_001182527.1| splicing factor, arginine/serine-rich 13B [Sus scrofa].
Length = 261
Score = 194 bits (494), Expect = 4e-50
Identities = 91/100 (91%), Positives = 96/100 (96%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRY RPPNTSLFVRNVAD TR EDLRREFGRYGPIVDVY+PLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYTRPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE 422
VRDAEDAL+NL+RKW+CGRQIEIQFAQGDRKTP QMK+KE
Sbjct: 61 VRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKE 100
>ref|XP_003361166.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Sus
scrofa].
Length = 342
Score = 192 bits (488), Expect = 2e-49
Identities = 103/157 (65%), Positives = 111/157 (70%), Gaps = 32/157 (20%)
Frame = +3
Query: 60 RQSCGRFAEPVSVRAETYAAVMSRYLRPPNTSLFV-RNVADD------------------ 182
R SCGRFAEPVSVRAETYAAVMSRYLRPPNTSLFV R ++ +
Sbjct: 28 RCSCGRFAEPVSVRAETYAAVMSRYLRPPNTSLFVPRGLSGEAAGSERTRAAAAAARWAG 87
Query: 183 -------------TRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 323
++SEDLRREFGRYGPIVDVY+PL + P + FEDVRDAEDA
Sbjct: 88 GGEGPCVMFSCPNSKSEDLRREFGRYGPIVDVYIPLAYTRTFPSPLTFSTFEDVRDAEDA 147
Query: 324 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 148 LHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 184
>ref|NP_001070697.1| serine/arginine-rich splicing factor 2 [Sus scrofa].
Length = 221
Score = 78.2 bits (191), Expect = 6e-15
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Frame = +3
Query: 132 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
Y RPP TSL V N+ T + LRR F +YG + DVY+P D YT+ RGFA+V+F
Sbjct: 3 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
Query: 297 EDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 425
D RDAEDA+ +D + GR++ +Q A+ R P+ ++ G
Sbjct: 63 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGR-PPDSHHSRRG 104
>ref|XP_003361690.1| PREDICTED: serine/arginine-rich splicing factor 3-like [Sus
scrofa].
Length = 164
Score = 72.0 bits (175), Expect = 4e-13
Identities = 34/95 (35%), Positives = 58/95 (61%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQ 407
RDA DA+ LD + +CG ++ ++ + G++++ N+
Sbjct: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNR 90
>ref|XP_003128414.1| PREDICTED: serine/arginine-rich splicing factor 3-like [Sus
scrofa].
Length = 164
Score = 72.0 bits (175), Expect = 4e-13
Identities = 34/95 (35%), Positives = 58/95 (61%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQ 407
RDA DA+ LD + +CG ++ ++ + G++++ N+
Sbjct: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNR 90
>ref|XP_003125259.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 2
[Sus scrofa].
Length = 226
Score = 68.9 bits (167), Expect = 3e-12
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 123 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 299
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
Query: 300 DVRDAEDALHNLDRKWICGRQIEIQFAQG 386
D RDAEDA+ LD K ICG ++ ++ + G
Sbjct: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTG 84
>ref|XP_003125258.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Sus scrofa].
Length = 238
Score = 68.9 bits (167), Expect = 3e-12
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 123 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 299
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
Query: 300 DVRDAEDALHNLDRKWICGRQIEIQFAQG 386
D RDAEDA+ LD K ICG ++ ++ + G
Sbjct: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTG 84
>ref|NP_001070689.1| transformer-2 protein homolog beta [Sus scrofa].
Length = 288
Score = 63.2 bits (152), Expect = 2e-10
Identities = 33/79 (41%), Positives = 47/79 (59%)
Frame = +3
Query: 144 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 323
PN L V ++ T DLR F +YGPI DV + D +RR RGFA+V FE+V DA++A
Sbjct: 116 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
Query: 324 LHNLDRKWICGRQIEIQFA 380
+ + GR+I + F+
Sbjct: 176 KERANGMELDGRRIRVDFS 194
>ref|XP_003354018.1| PREDICTED: cold-inducible RNA-binding protein isoform 3 [Sus
scrofa].
Length = 168
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/90 (36%), Positives = 53/90 (58%)
Frame = +3
Query: 156 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 335
LFV ++ DT + L + F +YG I +V V D T+R RGF +V FE++ DA+DA+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 336 DRKWICGRQIEIQFAQGDRKTPNQMKAKEG 425
+ K + GRQI + Q + + N+ + G
Sbjct: 68 NGKSVDGRQIRVD--QAGKSSDNRSRGYRG 95
>ref|XP_003354017.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Sus
scrofa].
Length = 168
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/90 (36%), Positives = 53/90 (58%)
Frame = +3
Query: 156 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 335
LFV ++ DT + L + F +YG I +V V D T+R RGF +V FE++ DA+DA+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 336 DRKWICGRQIEIQFAQGDRKTPNQMKAKEG 425
+ K + GRQI + Q + + N+ + G
Sbjct: 68 NGKSVDGRQIRVD--QAGKSSDNRSRGYRG 95
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,053,805
Number of extensions: 447264
Number of successful extensions: 1533
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 1521
Number of HSP's successfully gapped: 44
Length of query: 293
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,904,026
Effective search space: 1736285070
Effective search space used: 1736285070
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013833
(881 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034308.1| serine/arginine-rich splicing factor 10 isoform... 247 7e-66
Alignment gi|NP_001073856.1| serine/arginine-rich splicing factor 10 isof... 218 5e-57
Alignment gi|NP_035488.1| serine/arginine-rich splicing factor 2 [Mus mus... 78 8e-15
Alignment gi|NP_038691.1| serine/arginine-rich splicing factor 3 [Mus mus... 72 6e-13
Alignment gi|NP_001182416.1| serine/arginine-rich splicing factor 7 isofo... 69 5e-12
Alignment gi|NP_001182415.1| serine/arginine-rich splicing factor 7 isofo... 69 5e-12
Alignment gi|NP_001182414.1| serine/arginine-rich splicing factor 7 isofo... 69 5e-12
Alignment gi|NP_666195.1| serine/arginine-rich splicing factor 7 isoform ... 69 5e-12
Alignment gi|XP_003085565.1| PREDICTED: serine/arginine-rich splicing fac... 67 2e-11
Alignment gi|XP_003085799.1| PREDICTED: serine/arginine-rich splicing fac... 67 2e-11
>ref|NP_034308.1| serine/arginine-rich splicing factor 10 isoform 1 [Mus musculus].
Length = 183
Score = 247 bits (631), Expect = 7e-66
Identities = 127/183 (69%), Positives = 127/183 (69%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVXXXXXXXXXXXXXXXX 482
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 483 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNDRPNCSWNTQYSSAYYTS 662
DNDRPNCSWNTQYSSAYYTS
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS 180
Query: 663 RKI 671
RKI
Sbjct: 181 RKI 183
>ref|NP_001073856.1| serine/arginine-rich splicing factor 10 isoform 2 [Mus musculus].
Length = 262
Score = 218 bits (555), Expect = 5e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>ref|NP_035488.1| serine/arginine-rich splicing factor 2 [Mus musculus].
Length = 221
Score = 78.2 bits (191), Expect = 8e-15
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Frame = +3
Query: 132 YLRPPN-----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 296
Y RPP TSL V N+ T + LRR F +YG + DVY+P D YT+ RGFA+V+F
Sbjct: 3 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
Query: 297 EDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 425
D RDAEDA+ +D + GR++ +Q A+ R P+ ++ G
Sbjct: 63 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGR-PPDSHHSRRG 104
>ref|NP_038691.1| serine/arginine-rich splicing factor 3 [Mus musculus].
Length = 164
Score = 72.0 bits (175), Expect = 6e-13
Identities = 34/95 (35%), Positives = 58/95 (61%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
M R P + ++V N+ ++ +L R FG YGP+ V+V R P GFA+V+FED
Sbjct: 1 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFED 55
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQ 407
RDA DA+ LD + +CG ++ ++ + G++++ N+
Sbjct: 56 PRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNR 90
>ref|NP_001182416.1| serine/arginine-rich splicing factor 7 isoform 4 [Mus musculus].
Length = 223
Score = 68.9 bits (167), Expect = 5e-12
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 123 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 299
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
Query: 300 DVRDAEDALHNLDRKWICGRQIEIQFAQG 386
D RDAEDA+ LD K ICG ++ ++ + G
Sbjct: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTG 84
>ref|NP_001182415.1| serine/arginine-rich splicing factor 7 isoform 3 [Mus musculus].
Length = 227
Score = 68.9 bits (167), Expect = 5e-12
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 123 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 299
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
Query: 300 DVRDAEDALHNLDRKWICGRQIEIQFAQG 386
D RDAEDA+ LD K ICG ++ ++ + G
Sbjct: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTG 84
>ref|NP_001182414.1| serine/arginine-rich splicing factor 7 isoform 2 [Mus musculus].
Length = 235
Score = 68.9 bits (167), Expect = 5e-12
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 123 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 299
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
Query: 300 DVRDAEDALHNLDRKWICGRQIEIQFAQG 386
D RDAEDA+ LD K ICG ++ ++ + G
Sbjct: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTG 84
>ref|NP_666195.1| serine/arginine-rich splicing factor 7 isoform 1 [Mus musculus].
Length = 238
Score = 68.9 bits (167), Expect = 5e-12
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +3
Query: 123 MSRYLR-PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFE 299
MSRY R T ++V N+ +L R F YGP+ V++ R P GFA+V+FE
Sbjct: 1 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFE 55
Query: 300 DVRDAEDALHNLDRKWICGRQIEIQFAQG 386
D RDAEDA+ LD K ICG ++ ++ + G
Sbjct: 56 DPRDAEDAVRGLDGKVICGSRVRVELSTG 84
>ref|XP_003085565.1| PREDICTED: serine/arginine-rich splicing factor 3-like [Mus
musculus].
Length = 163
Score = 67.0 bits (162), Expect = 2e-11
Identities = 30/84 (35%), Positives = 53/84 (63%)
Frame = +3
Query: 156 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 335
++V N+ ++ +L FG YGP+ V+V R P GFA+V+FED RDA DA+ L
Sbjct: 11 VYVGNLGNNGNKTELEWAFGYYGPLRSVWV-----ARNPPGFAFVEFEDPRDAADAVREL 65
Query: 336 DRKWICGRQIEIQFAQGDRKTPNQ 407
D + +CG ++ ++ + G++++ N+
Sbjct: 66 DGRTLCGCRVRVELSNGEKRSRNR 89
>ref|XP_003085799.1| PREDICTED: serine/arginine-rich splicing factor 3-like [Mus
musculus].
Length = 163
Score = 67.0 bits (162), Expect = 2e-11
Identities = 30/84 (35%), Positives = 53/84 (63%)
Frame = +3
Query: 156 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 335
++V N+ ++ +L FG YGP+ V+V R P GFA+V+FED RDA DA+ L
Sbjct: 11 VYVGNLGNNGNKTELEWAFGYYGPLRSVWV-----ARNPPGFAFVEFEDPRDAADAVREL 65
Query: 336 DRKWICGRQIEIQFAQGDRKTPNQ 407
D + +CG ++ ++ + G++++ N+
Sbjct: 66 DGRTLCGCRVRVELSNGEKRSRNR 89
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,130,111
Number of extensions: 617580
Number of successful extensions: 2270
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 2243
Number of HSP's successfully gapped: 82
Length of query: 293
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 192
Effective length of database: 12,583,923
Effective search space: 2416113216
Effective search space used: 2416113216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013833
(881 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003119129.1| PREDICTED: serine/arginine-rich splicing fac... 247 9e-66
Alignment gi|NP_006616.1| serine/arginine-rich splicing factor 10 isoform... 247 9e-66
Alignment gi|XP_003119132.1| PREDICTED: serine/arginine-rich splicing fac... 218 6e-57
Alignment gi|XP_003119131.1| PREDICTED: serine/arginine-rich splicing fac... 218 6e-57
Alignment gi|XP_003119130.1| PREDICTED: serine/arginine-rich splicing fac... 218 6e-57
Alignment gi|NP_001177938.1| serine/arginine-rich splicing factor 10 isof... 218 6e-57
Alignment gi|NP_001177936.1| serine/arginine-rich splicing factor 10 isof... 218 6e-57
Alignment gi|NP_001177935.1| serine/arginine-rich splicing factor 10 isof... 218 6e-57
Alignment gi|NP_001177934.1| serine/arginine-rich splicing factor 10 isof... 218 6e-57
Alignment gi|NP_473357.1| serine/arginine-rich splicing factor 10 isoform... 218 6e-57
>ref|XP_003119129.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens].
Length = 183
Score = 247 bits (631), Expect = 9e-66
Identities = 127/183 (69%), Positives = 127/183 (69%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVXXXXXXXXXXXXXXXX 482
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 483 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNDRPNCSWNTQYSSAYYTS 662
DNDRPNCSWNTQYSSAYYTS
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS 180
Query: 663 RKI 671
RKI
Sbjct: 181 RKI 183
>ref|NP_006616.1| serine/arginine-rich splicing factor 10 isoform 1 [Homo sapiens].
Length = 183
Score = 247 bits (631), Expect = 9e-66
Identities = 127/183 (69%), Positives = 127/183 (69%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVXXXXXXXXXXXXXXXX 482
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSR 120
Query: 483 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNDRPNCSWNTQYSSAYYTS 662
DNDRPNCSWNTQYSSAYYTS
Sbjct: 121 SRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTS 180
Query: 663 RKI 671
RKI
Sbjct: 181 RKI 183
>ref|XP_003119132.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens].
Length = 165
Score = 218 bits (555), Expect = 6e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>ref|XP_003119131.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens].
Length = 262
Score = 218 bits (555), Expect = 6e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>ref|XP_003119130.1| PREDICTED: serine/arginine-rich splicing factor 10-like [Homo
sapiens].
Length = 173
Score = 218 bits (555), Expect = 6e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>ref|NP_001177938.1| serine/arginine-rich splicing factor 10 isoform 6 [Homo sapiens].
Length = 165
Score = 218 bits (555), Expect = 6e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>ref|NP_001177936.1| serine/arginine-rich splicing factor 10 isoform 5 [Homo sapiens].
Length = 182
Score = 218 bits (555), Expect = 6e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
Score = 55.5 bits (132), Expect = 6e-08
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +3
Query: 603 DNDRPNCSWNTQYSSAYYTSRKI 671
DNDRPNCSWNTQYSSAYYTSRKI
Sbjct: 160 DNDRPNCSWNTQYSSAYYTSRKI 182
>ref|NP_001177935.1| serine/arginine-rich splicing factor 10 isoform 4 [Homo sapiens].
Length = 173
Score = 218 bits (555), Expect = 6e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>ref|NP_001177934.1| serine/arginine-rich splicing factor 10 isoform 3 [Homo sapiens].
Length = 261
Score = 218 bits (555), Expect = 6e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>ref|NP_473357.1| serine/arginine-rich splicing factor 10 isoform 2 [Homo sapiens].
Length = 262
Score = 218 bits (555), Expect = 6e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 123 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 302
MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED
Sbjct: 1 MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFED 60
Query: 303 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 434
VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV
Sbjct: 61 VRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,525,626
Number of extensions: 719708
Number of successful extensions: 2649
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 2613
Number of HSP's successfully gapped: 82
Length of query: 293
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 191
Effective length of database: 14,934,836
Effective search space: 2852553676
Effective search space used: 2852553676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013833
(881 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 835 0.0
gb|GL893661.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 454 e-125
Sscrofa_Chr03 254 7e-65
Sscrofa_Chr01 84 1e-13
>Sscrofa_Chr16
|| Length = 86898991
Score = 835 bits (421), Expect = 0.0
Identities = 638/704 (90%), Gaps = 11/704 (1%)
Strand = Plus / Plus
Query: 181 ataccaggtctgaagatttgcgacgtgaatttggtcgttatggtcctatagttgatgtgt 240
|||||| ||||||||||||| ||| ||||||||||| | ||||||||| |||||||||||
Sbjct: 68086916 ataccacgtctgaagatttgtgacatgaatttggtcatcatggtcctagagttgatgtgt 68086975
Query: 241 atgttccacttgatttctacactcgtcgtccaagaggatttgcatatgttcaatttgagg 300
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 68086976 atgttccacttgatttctatactcgttgtccaagaggatttgcatatgttcaatttgagg 68087035
Query: 301 atgttcgtgatgctgaagatgctttgcataatttggacagaaaatggatttgtggacgcc 360
|||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| |
Sbjct: 68087036 atgttcatgatgctgaagatgctttacataatttgggcagaaaatggatttgtggacac- 68087094
Query: 361 aaattgaaatacagttcgcacagggggatcggaagactccaaatcagatgaaagcaaagg 420
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 68087095 aaattgaaatacagtttgcacagggggatcagaagactccaaatcagatgaaagcaaagg 68087154
Query: 421 aagggagaaatgtgtacagttcttcacgctatgatgattatgacagatataggcgttcta 480
|||||||||| ||||| || |||||||||||||||||||||| |||| |||||
Sbjct: 68087155 aagggagaaaggtgtaac------catgctatgatgattatgacagataaaggcattcta 68087208
Query: 481 gaagccgaagttacgaaagaaggagatcaagaagtcggtcctttgattacaactatagac 540
|||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct: 68087209 gaagccaaagttacaaaagaaggagatcaagaagttggtcctttggttacaactataaaa 68087268
Query: 541 gatcttatagccctagaaacagtagaccgactggaagaccacggcgtagcagaagccatt 600
|||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||
Sbjct: 68087269 gatcttatagtcctagaaacagtagaccaactgtaagacca-ggcgtagcagaagccata 68087327
Query: 601 ccgacaatgatagaccaaactgcagctggaatacccagtacagttctgcttactacactt 660
| ||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||
Sbjct: 68087328 ctgacaatgatagaccatactacagctggaatacccagtatacttctgcttactacacac 68087387
Query: 661 caagaaagatctgagaaagcggaaaaagaaccaaagaagggcagttcaagcgaccaaagg 720
||| ||||||||||||||| ||||||||||| |||||||||||||||||| ||||| ||
Sbjct: 68087388 caacaaagatctgagaaagtggaaaaagaacaaaagaagggcagttcaagtgaccagagt 68087447
Query: 721 gtgggtggaaggtgctgcagtatgaatactgtacgaatattttgactctggtctgaaaag 780
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 68087448 gtgggtggaaggtgctgcagtatgaatactgtatgaatattttgactctggtctgaaaag 68087507
Query: 781 ataaaagaatgttatcgaaactacatggaataattgaagtccctttcagttttgaagt-a 839
||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| |||| |
Sbjct: 68087508 ataaaagaatgttattgaaaccacatggaataactgaagacccttcaagtttgaaagtga 68087567
Query: 840 gcattttaggac-aataaaaagaaattc-actttgtacttgtgg 881
|||||||||||| ||| ||| ||||||| ||||||||| |||||
Sbjct: 68087568 gcattttaggacaaatgaaaggaaattcaactttgtacctgtgg 68087611
Score = 823 bits (415), Expect = 0.0
Identities = 612/674 (90%), Gaps = 9/674 (1%)
Strand = Plus / Minus
Query: 181 ataccaggtctgaagatttgcgacgtgaatttggtcgttatggtcctatagttgatgtgt 240
|||||| ||||||||||||| ||| ||||||||||| | |||||||||||||||||||||
Sbjct: 68259206 ataccacgtctgaagatttgtgacatgaatttggtcatcatggtcctatagttgatgtgt 68259147
Query: 241 atgttccacttgatttctacactcgtcgtccaagaggatttgcatatgttcaatttgagg 300
||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct: 68259146 atgttccacttgatttctatactcgttgcccaagaggatttgcatatgttcaatttgagg 68259087
Query: 301 atgttcgtgatgctgaagatgctttgcataatttggacagaaaatggatttgtggacgcc 360
|||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||| |
Sbjct: 68259086 atgttcatgatgctgaagatgctttacataatttgggcagaaactggatttgtggacac- 68259028
Query: 361 aaattgaaatacagttcgcacagggggatcggaagactccaaatcagatgaaagcaaagg 420
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 68259027 aaattgaaatacagtttgcacagggggatcagaagactccaaatcagatgaaagcaaagg 68258968
Query: 421 aagggagaaatgtgtacagttcttcacgctatgatgattatgacagatataggcgttcta 480
|||||||||| ||||| || |||||||||||||||||||||| |||| |||||
Sbjct: 68258967 aagggagaaaggtgtaac------catgctatgatgattatgacagataaaggcattcta 68258914
Query: 481 gaagccgaagttacgaaagaaggagatcaagaagtcggtcctttgattacaactatagac 540
|||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 68258913 gaagccaaagttacaaaagaaggagatcaagaagttggtcctttgattacaactataaaa 68258854
Query: 541 gatcttatagccctagaaacagtagaccgactggaagaccacggcgtagcagaagccatt 600
|||||||||| || ||||| |||||||| |||| ||||||| |||||||||||||||||
Sbjct: 68258853 gatcttatagtcccagaaagagtagaccaactgtaagacca-ggcgtagcagaagccata 68258795
Query: 601 ccgacaatgatagaccaaactgcagctggaatacccagtacagttctgcttactacactt 660
| ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct: 68258794 ctgacaatgatagaccatactacagctggaatacccagtatagttctgcttactacacac 68258735
Query: 661 caagaaagatctgagaaagcggaaaaagaaccaaagaagggcagttcaagcgaccaaagg 720
||| ||||||||||||||| ||||||||||| |||||||||||||||||| ||||| ||
Sbjct: 68258734 caacaaagatctgagaaagtggaaaaagaacaaaagaagggcagttcaagtgaccagagt 68258675
Query: 721 gtgggtggaaggtgctgcagtatgaatactgtacgaatattttgactctggtctgaaaag 780
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 68258674 gtgggtggaaggtgctgcagtatgaatactgtatgaatattttgactctggtctgaaaag 68258615
Query: 781 ataaaagaatgttatcgaaactacatggaataattgaagtccctttcagttttgaagt-a 839
||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| |||| |
Sbjct: 68258614 ataaaagaatgttattgaaaccacatggaataactgaagacccttcaagtttgaaagtga 68258555
Query: 840 gcattttaggacaa 853
||||||||||||||
Sbjct: 68258554 gcattttaggacaa 68258541
>gb|GL893661.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2403
Length = 78068
Score = 454 bits (229), Expect = e-125
Identities = 265/273 (97%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 612 agaccaaactgcagctggaatacccagtacagttctgcttactacacttcaagaaagatc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58363 agaccaaactgcagctggaatacccagtacagttctgcttactacacttcaagaaagatc 58422
Query: 672 tgagaaagcggaaaaagaaccaaagaagggcagttcaagcgaccaaagggtgggtggaag 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58423 tgagaaagcggaaaaagaaccaaagaagggcagttcaagcgaccaaagggtgggtggaag 58482
Query: 732 gtgctgcagtatgaatactgtacgaatattttgactctggtctgaaaagataaaagaatg 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58483 gtgctgcagtatgaatactgtacgaatattttgactctggtctgaaaagataaaagaatg 58542
Query: 792 ttatcgaaactacatggaataattgaagtccctttcagttttgaagt-agcattttagga 850
|||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 58543 ttatcgaaactacatggaataattgaagtcccttcaagtttgaaagtaagcattttagga 58602
Query: 851 c-aataaaaagaaattc-actttgtacttgtgg 881
| ||||||| ||||||| |||||||||||||||
Sbjct: 58603 caaataaaaggaaattcaactttgtacttgtgg 58635
Score = 323 bits (163), Expect = 9e-86
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 397 ctccaaatcagatgaaagcaaaggaagggagaaatgtgtacagttcttcacgctatgatg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54241 ctccaaatcagatgaaagcaaaggaagggagaaatgtgtacagttcttcacgctatgatg 54300
Query: 457 attatgacagatataggcgttctagaagccgaagttacgaaagaaggagatcaagaagtc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54301 attatgacagatataggcgttctagaagccgaagttacgaaagaaggagatcaagaagtc 54360
Query: 517 ggtcctttgattacaactatagacgatcttatagccctagaaa 559
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54361 ggtcctttgattacaactatagacgatcttatagccctagaaa 54403
Score = 240 bits (121), Expect = 1e-60
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 54 atccgccgccagagctgcggacggtttgctgagcccgttagtgtccgtgctgagacttac 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46989 atccgccgccagagctgcggacggtttgctgagcccgttagtgtccgtgctgagacttac 47048
Query: 114 gccgcagtcatgtctcggtatctgcgtccccccaatacgtctctgttcgtaaggaacgtg 173
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 47049 gccgcagtcatgtctcggtatctgcgtccccccaatacgtctctgttcgtgaggaacgtg 47108
Query: 174 gccga 178
|||||
Sbjct: 47109 gccga 47113
Score = 206 bits (104), Expect = 1e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 293 atttgaggatgttcgtgatgctgaagatgctttgcataatttggacagaaaatggatttg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52611 atttgaggatgttcgtgatgctgaagatgctttgcataatttggacagaaaatggatttg 52670
Query: 353 tggacgccaaattgaaatacagttcgcacagggggatcggaaga 396
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52671 tggacgccaaattgaaatacagttcgcacagggggatcggaaga 52714
Score = 115 bits (58), Expect = 4e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 186 aggtctgaagatttgcgacgtgaatttggtcgttatggtcctatagttgatgtgtatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48766 aggtctgaagatttgcgacgtgaatttggtcgttatggtcctatagttgatgtgtatg 48823
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 560 cagtagaccgactggaagaccacggcgtagcagaagccattccgacaatgatag 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54764 cagtagaccgactggaagaccacggcgtagcagaagccattccgacaatgatag 54817
>Sscrofa_Chr03
|| Length = 144787322
Score = 254 bits (128), Expect = 7e-65
Identities = 204/231 (88%), Gaps = 10/231 (4%)
Strand = Plus / Minus
Query: 64 agagctgcggacggtttgctgagcccgttagtgtccgtgctgagacttacgccgcagtca 123
||||||| ||||||||||||||||| |||||||||| ||||||||||||||| | ||||
Sbjct: 57868042 agagctgaggacggtttgctgagccggttagtgtccctgctgagacttacgctgtggtca 57867983
Query: 124 tgtctcggtatctgcgtccccccaatacgtctctgttcgtaaggaacgtggccgacgata 183
|||||| | | ||| | | |||||||||| ||||||| |||||||| ||||
Sbjct: 57867982 tgtctcaggagctg----------acatgtctctgttcataaggaatgtggccgaggata 57867933
Query: 184 ccaggtctgaagatttgcgacgtgaatttggtcgttatggtcctatagttgatgtgtatg 243
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 57867932 ccaggtctgaagatttgcgacgtggatttggtcgctatggtcctatagttgatgtgtatg 57867873
Query: 244 ttccacttgatttctacactcgtcgtccaagaggatttgcatatgttcaat 294
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 57867872 ttccacttgatttctacactcgtcgtccaagaggatttgcataagttcaat 57867822
>Sscrofa_Chr01
|| Length = 315321322
Score = 83.8 bits (42), Expect = 1e-13
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 185 caggtctgaagatttgcgacgtgaatttggtcgttatggtcctatagttgatgtgtatgt 244
|||| |||| || ||||| ||||| |||||||| || || |||||||| ||||| || |
Sbjct: 63802469 caggcctgaggacttgcgccgtgagtttggtcgatacggccctatagtagatgtttacat 63802528
Query: 245 tccacttgatttctacactcgtcgtccaagaggatttgcatatgttcaat 294
||||||||| |||||||| || || |||||||||||||| ||||||||||
Sbjct: 63802529 tccacttgacttctacacccgccgcccaagaggatttgcttatgttcaat 63802578
Score = 83.8 bits (42), Expect = 1e-13
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 185 caggtctgaagatttgcgacgtgaatttggtcgttatggtcctatagttgatgtgtatgt 244
|||| |||| || ||||| ||||| |||||||| || || |||||||| ||||| || |
Sbjct: 63934134 caggcctgaggacttgcgccgtgagtttggtcgatacggccctatagtagatgtttacat 63934075
Query: 245 tccacttgatttctacactcgtcgtccaagaggatttgcatatgttcaat 294
||||||||| |||||||| || || |||||||||||||| ||||||||||
Sbjct: 63934074 tccacttgacttctacacccgccgcccaagaggatttgcttatgttcaat 63934025
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,057,610
Number of extensions: 168
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 14
Length of query: 881
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 860
Effective length of database: 2,808,413,156
Effective search space: 2415235314160
Effective search space used: 2415235314160
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)