Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013834
(1280 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537542.2| PREDICTED: similar to ATP-dependent RNA helicas... 560 e-160
Alignment gi|XP_863206.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 58 2e-08
Alignment gi|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 58 2e-08
Alignment gi|XP_863165.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 57 3e-08
Alignment gi|XP_863121.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 57 3e-08
Alignment gi|XP_534818.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 57 3e-08
Alignment gi|XP_862993.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 57 3e-08
Alignment gi|XP_851051.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 57 3e-08
Alignment gi|XP_866840.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 56 6e-08
Alignment gi|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 56 6e-08
>ref|XP_537542.2| PREDICTED: similar to ATP-dependent RNA helicase DDX24 (DEAD-box
protein 24) [Canis familiaris].
Length = 998
Score = 560 bits (1444), Expect = e-160
Identities = 303/435 (69%), Positives = 326/435 (74%), Gaps = 9/435 (2%)
Frame = +2
Query: 2 GNRCGVVHVTMKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCF 181
G G TMKLKETKSRPKPPS G+FQ KGIKVVGKWKQV+IDPNMFADGQMDDLVCF
Sbjct: 137 GAAAGSPRATMKLKETKSRPKPPSYGRFQTKGIKVVGKWKQVEIDPNMFADGQMDDLVCF 196
Query: 182 EELTDYRLVSPAKNSSNLFLKEESKKRKAQAVAXXXXXXXXXXXXXXXXXXXXRDVAAEG 361
EELTDY+LVSPAKNSS+LF KEE KKRKAQAV+ +D EG
Sbjct: 197 EELTDYQLVSPAKNSSSLFSKEEPKKRKAQAVSGGEEGESSSSKKKIKLKKN-KDTETEG 255
Query: 362 TSVQKEFGVKDPEPEPQGDSTVCPDAEVGEMASESPAQTVPXXXXXXXXXXAEPSQGTTP 541
TSVQKEF V+D P+PQGD TV PD E+ E+ SE A TVP EPSQGT P
Sbjct: 256 TSVQKEFEVRDAGPQPQGDGTVYPDPEIEEVVSEGSAPTVPKKKKKKGKKKLEPSQGTAP 315
Query: 542 KVSKRAKTWMPETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKL 721
KV K+AKTWMPE HDHKADV+AWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKL
Sbjct: 316 KVPKKAKTWMPEMHDHKADVTAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKL 375
Query: 722 DILGAAETGSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGR 901
DILGAAETGSGKTLAFAIPMIH VLQWQVK K TP +S TGA P ET TE
Sbjct: 376 DILGAAETGSGKTLAFAIPMIHTVLQWQVKNKRTPAVSNTGALPGETRTE---------- 425
Query: 902 AGTESGALPDKIGIDSEALPSEAG---------AKTSATTADQVLPSHDADDAGEGPSSL 1054
A TES LPD+IGI+ EALPSEAG KTSA +DQ+LP D DDAGEGPSSL
Sbjct: 426 ARTESEVLPDEIGIEGEALPSEAGVKARATPSKVKTSAAVSDQMLPFCD-DDAGEGPSSL 484
Query: 1055 IREKPVPKQDENKEEKLDEEHSRELNQELNSKIATSEAHPKRPLLGLVLTPTRELAVQVK 1234
I+ +PKQDE+KEEKLDEE + L QEL K+ T + HPKRPLLGLVLTPTRELAVQVK
Sbjct: 485 IK-NTIPKQDEDKEEKLDEEETGRLKQELGGKMTTCKVHPKRPLLGLVLTPTRELAVQVK 543
Query: 1235 QHIDAVAKFTGIXTA 1279
QHIDAVAKFTGI TA
Sbjct: 544 QHIDAVAKFTGIKTA 558
>ref|XP_863206.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
isoform 11 [Canis familiaris].
Length = 811
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 448
Query: 779 MIHAV 793
++ +
Sbjct: 449 LLSGI 453
>ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
isoform 10 [Canis familiaris].
Length = 812
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/67 (38%), Positives = 43/67 (64%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 448
Query: 779 MIHAVLQ 799
++ +++
Sbjct: 449 LLLTLIE 455
>ref|XP_863165.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
isoform 9 [Canis familiaris].
Length = 811
Score = 57.4 bits (137), Expect = 3e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 448
Query: 779 MI 784
++
Sbjct: 449 LL 450
>ref|XP_863121.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
isoform 7 [Canis familiaris].
Length = 810
Score = 57.4 bits (137), Expect = 3e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 448
Query: 779 MI 784
++
Sbjct: 449 LL 450
>ref|XP_534818.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
isoform 1 [Canis familiaris].
Length = 801
Score = 57.4 bits (137), Expect = 3e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 448
Query: 779 MI 784
++
Sbjct: 449 LL 450
>ref|XP_862993.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
isoform 3 [Canis familiaris].
Length = 634
Score = 57.4 bits (137), Expect = 3e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 204 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 262
Query: 779 MI 784
++
Sbjct: 263 LL 264
>ref|XP_851051.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
isoform 2 [Canis familiaris].
Length = 820
Score = 57.4 bits (137), Expect = 3e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 448
Query: 779 MI 784
++
Sbjct: 449 LL 450
>ref|XP_866840.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
isoform 2 isoform 2 [Canis familiaris].
Length = 407
Score = 56.2 bits (134), Expect = 6e-08
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Frame = +2
Query: 572 PETHDHKAD----------VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKL 721
PE HD A+ +KDL V + A LG++ PT IQ + A++ +
Sbjct: 4 PEEHDSPAEEPQPAVQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR- 62
Query: 722 DILGAAETGSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGR 901
DI+G AETGSGKT AFA+P+++A+L+ P + + P E + + + + G
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLE-----TPQRLFALVLTPTRELAFQISEQFEALGS 117
Query: 902 A-GTESGALPDKIGIDS 949
+ G +S + GIDS
Sbjct: 118 SIGVQSAVIVG--GIDS 132
>ref|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
isoform 1 isoform 1 [Canis familiaris].
Length = 456
Score = 56.2 bits (134), Expect = 6e-08
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Frame = +2
Query: 572 PETHDHKAD----------VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKL 721
PE HD A+ +KDL V + A LG++ PT IQ + A++ +
Sbjct: 4 PEEHDSPAEEPQPAVQEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR- 62
Query: 722 DILGAAETGSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGR 901
DI+G AETGSGKT AFA+P+++A+L+ P + + P E + + + + G
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLE-----TPQRLFALVLTPTRELAFQISEQFEALGS 117
Query: 902 A-GTESGALPDKIGIDS 949
+ G +S + GIDS
Sbjct: 118 SIGVQSAVIVG--GIDS 132
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,453,015
Number of extensions: 1153763
Number of successful extensions: 5358
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 5257
Number of HSP's successfully gapped: 19
Length of query: 426
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 320
Effective length of database: 15,340,888
Effective search space: 4909084160
Effective search space used: 4909084160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013834
(1280 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092515.1| ATP-dependent RNA helicase DDX24 [Bos taurus]. 558 e-159
Alignment gi|NP_001095672.1| probable ATP-dependent RNA helicase DDX23 [B... 57 3e-08
Alignment gi|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [B... 56 8e-08
Alignment gi|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polype... 54 2e-07
Alignment gi|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypepti... 54 2e-07
Alignment gi|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [B... 54 3e-07
Alignment gi|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [B... 53 7e-07
Alignment gi|NP_001039472.1| ATP-dependent RNA helicase DDX55 [Bos taurus]. 52 9e-07
Alignment gi|NP_001076071.1| probable ATP-dependent RNA helicase DDX41 [B... 51 2e-06
Alignment gi|XP_002694562.1| PREDICTED: DEAD box RNA helicase DP97-like [... 50 6e-06
>ref|NP_001092515.1| ATP-dependent RNA helicase DDX24 [Bos taurus].
Length = 852
Score = 558 bits (1439), Expect = e-159
Identities = 298/428 (69%), Positives = 323/428 (75%), Gaps = 12/428 (2%)
Frame = +2
Query: 32 MKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCFEELTDYRLVS 211
MKLKE KSRPKP +CG+FQ+KGIKVVGKWK+VKIDPNMFADGQMDDLVCFEELTDY+LVS
Sbjct: 1 MKLKEKKSRPKPTNCGRFQKKGIKVVGKWKEVKIDPNMFADGQMDDLVCFEELTDYQLVS 60
Query: 212 PAKNSSNLFLKEESKKRKAQAVAXXXXXXXXXXXXXXXXXXXXRDVAAEGTSVQKEFGVK 391
PAK+SS+LF K E KKRKAQAVA +DV EGTS QK F VK
Sbjct: 61 PAKSSSSLFSKGEPKKRKAQAVAEGEEEGEPGSSKKKMKLKKSKDVETEGTSSQKAFEVK 120
Query: 392 DPEPEPQGDSTVCPDAEVGEMASESPAQTVPXXXXXXXXXXAEPSQGTTPKVSKRAKTWM 571
D EP PQG+ST+CPD EVGEMASE AQTVP +EPSQGT+PKV K+AKTWM
Sbjct: 121 DTEPAPQGESTICPDPEVGEMASEGLAQTVPKKKKKKGKKKSEPSQGTSPKVPKKAKTWM 180
Query: 572 PETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGS 751
PE HDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGS
Sbjct: 181 PEMHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGS 240
Query: 752 GKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTESGALPD 931
GKTLAFAIPMI AVL+WQVKKKPTP +S TGAPP ET E AG GALPD
Sbjct: 241 GKTLAFAIPMIDAVLRWQVKKKPTPAISNTGAPPGETGNE----------AGAAPGALPD 290
Query: 932 KIGIDSEALPSEAGAKT-----------SATTADQVLPSHDAD-DAGEGPSSLIREKPVP 1075
+IGI+ EA PSE GAKT A +D LPS D D DAGEGPSSLIREKP P
Sbjct: 291 EIGIEGEAPPSEVGAKTGTPPSQAGTSIGAAASDPGLPSRDGDGDAGEGPSSLIREKPTP 350
Query: 1076 KQDENKEEKLDEEHSRELNQELNSKIATSEAHPKRPLLGLVLTPTRELAVQVKQHIDAVA 1255
+Q++N+ EK DEE + +L QEL S PKRPLLGLVLTPTRELAVQVKQH+DAVA
Sbjct: 351 EQEDNQVEKHDEEQAGKLKQELGG----STVPPKRPLLGLVLTPTRELAVQVKQHVDAVA 406
Query: 1256 KFTGIXTA 1279
KFT I TA
Sbjct: 407 KFTSIKTA 414
>ref|NP_001095672.1| probable ATP-dependent RNA helicase DDX23 [Bos taurus].
Length = 820
Score = 57.4 bits (137), Expect = 3e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 448
Query: 779 MI 784
++
Sbjct: 449 LL 450
>ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus].
Length = 457
Score = 55.8 bits (133), Expect = 8e-08
Identities = 31/76 (40%), Positives = 48/76 (63%)
Frame = +2
Query: 572 PETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGS 751
P+T + +KDL V + A LG++ PT IQ + A++ + DI+G AETGS
Sbjct: 16 PQTAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGS 74
Query: 752 GKTLAFAIPMIHAVLQ 799
GKT AFA+P+++A+L+
Sbjct: 75 GKTGAFALPILNALLE 90
>ref|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus].
Length = 1031
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/91 (29%), Positives = 48/91 (52%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +W + +L +L G+ PTPIQ + PAI D++G A+TGSGKT+AF +P
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAI-PAIMSGRDLIGIAKTGSGKTIAFLLP 429
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
M ++ + ++ ++ P E + +
Sbjct: 430 MFRHIMDQRSLEEGEGPIAVIMTPTRELALQ 460
>ref|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus].
Length = 1031
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/91 (29%), Positives = 48/91 (52%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +W + +L +L G+ PTPIQ + PAI D++G A+TGSGKT+AF +P
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAI-PAIMSGRDLIGIAKTGSGKTIAFLLP 429
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
M ++ + ++ ++ P E + +
Sbjct: 430 MFRHIMDQRSLEEGEGPIAVIMTPTRELALQ 460
>ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus].
Length = 765
Score = 53.9 bits (128), Expect = 3e-07
Identities = 44/177 (24%), Positives = 81/177 (45%)
Frame = +2
Query: 605 AWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMI 784
+++D+ + +P+L+A++ +GF PTPIQ + + K DI A TG+GKT AFA+P++
Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGK-DICACAATGTGKTAAFALPVL 246
Query: 785 HAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTESGALPDKIGIDSEALPS 964
++ K + PV P + E G ++ S + + ++ + + + S
Sbjct: 247 ERLI---YKPRQAPVTRVLVLVP---TRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKS 300
Query: 965 EAGAKTSATTADQVLPSHDADDAGEGPSSLIREKPVPKQDENKEEKLDEEHSRELNQ 1135
+ A +A P D PS + V DE + LDE ++ +
Sbjct: 301 QEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDE-ADRMLDEYFEEQMKE 356
>ref|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [Bos taurus].
Length = 876
Score = 52.8 bits (125), Expect = 7e-07
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +2
Query: 596 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 775
+++ + D + K L+ L + T IQ T+ A++ K D+LGAA+TGSGKTLAF +
Sbjct: 67 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGK-DVLGAAKTGSGKTLAFLV 125
Query: 776 PMIHAV--LQW 802
P++ A+ LQW
Sbjct: 126 PVLEALYRLQW 136
>ref|NP_001039472.1| ATP-dependent RNA helicase DDX55 [Bos taurus].
Length = 601
Score = 52.4 bits (124), Expect = 9e-07
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Frame = +2
Query: 605 AWKDLFVP--KPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+W+ L VP VL L LGF TP+Q+ T+ +++K D+ A TGSGKTLAF IP
Sbjct: 8 SWESLPVPLHPKVLSVLRELGFPYMTPVQSATIPLFMKNK-DVAAEAVTGSGKTLAFVIP 66
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
+ +L+ + K K + V + P E + +
Sbjct: 67 IEEILLRREEKFKKSQVGAIIITPTRELAVQ 97
>ref|NP_001076071.1| probable ATP-dependent RNA helicase DDX41 [Bos taurus].
Length = 622
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/74 (40%), Positives = 43/74 (58%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ ++K++ P +LR L G PTPIQ + P I D++G A TGSGKTL F +P
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGI-PTILSGRDMIGIAFTGSGKTLVFTLP 238
Query: 779 MIHAVLQWQVKKKP 820
+I L+ Q K+ P
Sbjct: 239 VIMFCLE-QEKRLP 251
>ref|XP_002694562.1| PREDICTED: DEAD box RNA helicase DP97-like [Bos taurus].
Length = 876
Score = 49.7 bits (117), Expect = 6e-06
Identities = 28/87 (32%), Positives = 42/87 (48%)
Frame = +2
Query: 521 PSQGTTPKVSKRAKTWMPETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLA 700
P+ T V + + + K ++ + + PV + + G+ PTPIQ T+
Sbjct: 69 PTSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTI- 127
Query: 701 PAIRDKLDILGAAETGSGKTLAFAIPM 781
P I D D++ A TGSGKT F IPM
Sbjct: 128 PMILDGKDVVAMARTGSGKTACFLIPM 154
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,534,766
Number of extensions: 1120284
Number of successful extensions: 4945
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4858
Number of HSP's successfully gapped: 10
Length of query: 426
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 321
Effective length of database: 14,207,134
Effective search space: 4560490014
Effective search space used: 4560490014
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013834
(1280 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356831.1| PREDICTED: ATP-dependent RNA helicase DDX24 ... 748 0.0
Alignment gi|XP_003356838.1| PREDICTED: ATP-dependent RNA helicase DDX24-... 409 e-114
Alignment gi|XP_003126138.2| PREDICTED: probable ATP-dependent RNA helica... 57 2e-08
Alignment gi|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helica... 57 2e-08
Alignment gi|XP_003359134.1| PREDICTED: ATP-dependent RNA helicase DDX55 ... 54 1e-07
Alignment gi|XP_001927747.2| PREDICTED: ATP-dependent RNA helicase DDX55 ... 54 1e-07
Alignment gi|XP_003354330.1| PREDICTED: probable ATP-dependent RNA helica... 54 1e-07
Alignment gi|XP_003362091.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP... 54 2e-07
Alignment gi|XP_003135023.1| PREDICTED: probable ATP-dependent RNA helica... 50 3e-06
Alignment gi|XP_001927639.2| PREDICTED: ATP-dependent RNA helicase DDX18 ... 49 8e-06
>ref|XP_003356831.1| PREDICTED: ATP-dependent RNA helicase DDX24 [Sus scrofa].
Length = 856
Score = 748 bits (1931), Expect = 0.0
Identities = 382/416 (91%), Positives = 383/416 (92%)
Frame = +2
Query: 32 MKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCFEELTDYRLVS 211
MKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCFEELTDYRLVS
Sbjct: 1 MKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCFEELTDYRLVS 60
Query: 212 PAKNSSNLFLKEESKKRKAQAVAXXXXXXXXXXXXXXXXXXXXRDVAAEGTSVQKEFGVK 391
PAKNSS+LFLKEESKKRKAQAVA RDVAAEGTSVQKEFGVK
Sbjct: 61 PAKNSSSLFLKEESKKRKAQAVAEGEEEGESSSSKKKMKLKKSRDVAAEGTSVQKEFGVK 120
Query: 392 DPEPEPQGDSTVCPDAEVGEMASESPAQTVPXXXXXXXXXXAEPSQGTTPKVSKRAKTWM 571
DPEPEPQGDSTVCPDAEVGEMASESPAQTVP AEPSQGTTPKVSKRAKTWM
Sbjct: 121 DPEPEPQGDSTVCPDAEVGEMASESPAQTVPKKKKKKGKKKAEPSQGTTPKVSKRAKTWM 180
Query: 572 PETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGS 751
PETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGS
Sbjct: 181 PETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGS 240
Query: 752 GKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTESGALPD 931
GKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTESGALPD
Sbjct: 241 GKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTESGALPD 300
Query: 932 KIGIDSEALPSEAGAKTSATTADQVLPSHDADDAGEGPSSLIREKPVPKQDENKEEKLDE 1111
KIGIDSEALPSEAGAKTSATTADQVLPSHDADDAGEGPSSLIREKPVPKQDENKEEKLDE
Sbjct: 301 KIGIDSEALPSEAGAKTSATTADQVLPSHDADDAGEGPSSLIREKPVPKQDENKEEKLDE 360
Query: 1112 EHSRELNQELNSKIATSEAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIXTA 1279
EHS EL QELNSKIATSEAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGI TA
Sbjct: 361 EHSGELKQELNSKIATSEAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTA 416
>ref|XP_003356838.1| PREDICTED: ATP-dependent RNA helicase DDX24-like [Sus scrofa].
Length = 280
Score = 409 bits (1051), Expect = e-114
Identities = 208/238 (87%), Positives = 208/238 (87%)
Frame = +2
Query: 32 MKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCFEELTDYRLVS 211
MKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCFEELTDYRLVS
Sbjct: 1 MKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCFEELTDYRLVS 60
Query: 212 PAKNSSNLFLKEESKKRKAQAVAXXXXXXXXXXXXXXXXXXXXRDVAAEGTSVQKEFGVK 391
PAKNSSNLFLKEESKKRKAQAVA RDVAAEGTSVQKEFGVK
Sbjct: 61 PAKNSSNLFLKEESKKRKAQAVAEGEEEGESSSSKKKMKLKKSRDVAAEGTSVQKEFGVK 120
Query: 392 DPEPEPQGDSTVCPDAEVGEMASESPAQTVPXXXXXXXXXXAEPSQGTTPKVSKRAKTWM 571
DPEPEPQGDSTVCPDAEVGEMASESPAQTVP AEPSQGTTPKVSKRAKTWM
Sbjct: 121 DPEPEPQGDSTVCPDAEVGEMASESPAQTVPKKKKKKGKKKAEPSQGTTPKVSKRAKTWM 180
Query: 572 PETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAET 745
PETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAET
Sbjct: 181 PETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAET 238
>ref|XP_003126138.2| PREDICTED: probable ATP-dependent RNA helicase DDX23, partial [Sus
scrofa].
Length = 789
Score = 57.4 bits (137), Expect = 2e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 448
Query: 779 MI 784
++
Sbjct: 449 LL 450
>ref|XP_003361101.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Sus
scrofa].
Length = 473
Score = 57.0 bits (136), Expect = 2e-08
Identities = 31/76 (40%), Positives = 49/76 (64%)
Frame = +2
Query: 572 PETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGS 751
P+T + + +KDL V + A LG++ PT IQ + A++ + DI+G AETGS
Sbjct: 67 PQTAVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR-DIIGLAETGS 125
Query: 752 GKTLAFAIPMIHAVLQ 799
GKT AFA+P+++A+L+
Sbjct: 126 GKTGAFALPILNALLE 141
>ref|XP_003359134.1| PREDICTED: ATP-dependent RNA helicase DDX55 isoform 2 [Sus scrofa].
Length = 569
Score = 54.3 bits (129), Expect = 1e-07
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Frame = +2
Query: 605 AWKDLFVP--KPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+W+ L VP VL L LGF TP+Q+ T+ +++K D+ A TGSGKTLAF IP
Sbjct: 8 SWESLPVPLHPRVLDVLQELGFPYMTPVQSATIPLFMKNK-DVAAEAVTGSGKTLAFVIP 66
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
++ +L+ + K K + V + P E + +
Sbjct: 67 ILEILLRREEKLKKSQVGAIIITPTRELAVQ 97
>ref|XP_001927747.2| PREDICTED: ATP-dependent RNA helicase DDX55 isoform 1 [Sus scrofa].
Length = 600
Score = 54.3 bits (129), Expect = 1e-07
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Frame = +2
Query: 605 AWKDLFVP--KPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+W+ L VP VL L LGF TP+Q+ T+ +++K D+ A TGSGKTLAF IP
Sbjct: 8 SWESLPVPLHPRVLDVLQELGFPYMTPVQSATIPLFMKNK-DVAAEAVTGSGKTLAFVIP 66
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
++ +L+ + K K + V + P E + +
Sbjct: 67 ILEILLRREEKLKKSQVGAIIITPTRELAVQ 97
>ref|XP_003354330.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Sus scrofa].
Length = 1031
Score = 54.3 bits (129), Expect = 1e-07
Identities = 27/91 (29%), Positives = 48/91 (52%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +W + +L +L G+ PTPIQ + PAI D++G A+TGSGKT+AF +P
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAI-PAIMSGRDLIGIAKTGSGKTIAFLLP 429
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
M ++ + ++ ++ P E + +
Sbjct: 430 MFRHIMDQRSLEEGEGPIAVIMTPTRELALQ 460
>ref|XP_003362091.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like, partial [Sus scrofa].
Length = 757
Score = 53.5 bits (127), Expect = 2e-07
Identities = 27/75 (36%), Positives = 47/75 (62%)
Frame = +2
Query: 605 AWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMI 784
+++D+ + +P+L+A++ +GF PTPIQ + + K DI A TG+GKT AFA+P++
Sbjct: 207 SFQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGK-DICACAATGTGKTAAFALPVL 265
Query: 785 HAVLQWQVKKKPTPV 829
++ K + PV
Sbjct: 266 ERLI---YKPRQAPV 277
>ref|XP_003135023.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Sus
scrofa].
Length = 630
Score = 50.1 bits (118), Expect = 3e-06
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Frame = +2
Query: 599 VSAWKDLFVPKP-VLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 775
+ ++D F P P +++++ GF PTPIQ+ P + +D++G A+TG+GKTL++ +
Sbjct: 222 ICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAW-PIVLQGIDLIGIAQTGTGKTLSYLM 280
Query: 776 P-MIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTES 916
P IH Q + K P E + + GAE G +S
Sbjct: 281 PGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKS 328
>ref|XP_001927639.2| PREDICTED: ATP-dependent RNA helicase DDX18 [Sus scrofa].
Length = 672
Score = 48.5 bits (114), Expect = 8e-06
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = +2
Query: 623 VPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIHAVLQ 799
V + LRA+ +GF+ T IQ ++ P + + D+L AA+TGSGKTLAF IP + +++
Sbjct: 188 VNENTLRAIKEMGFTNMTEIQHKSIRPLLEGR-DLLAAAKTGSGKTLAFLIPAVELIVK 245
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,640,754
Number of extensions: 717778
Number of successful extensions: 3121
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3084
Number of HSP's successfully gapped: 10
Length of query: 426
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 324
Effective length of database: 8,804,438
Effective search space: 2852637912
Effective search space used: 2852637912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013834
(1280 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001152974.1| ATP-dependent RNA helicase DDX24 isoform 1 [... 467 e-132
Alignment gi|NP_065240.2| ATP-dependent RNA helicase DDX24 isoform 2 [Mus... 465 e-131
Alignment gi|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [M... 57 2e-08
Alignment gi|NP_001177724.1| ATP-dependent RNA helicase DDX55 isoform 2 [... 57 4e-08
Alignment gi|NP_080685.2| ATP-dependent RNA helicase DDX55 isoform 1 [Mus... 57 4e-08
Alignment gi|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus ... 55 2e-07
Alignment gi|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus ... 54 2e-07
Alignment gi|NP_084212.2| probable ATP-dependent RNA helicase DDX10 [Mus ... 53 6e-07
Alignment gi|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus ... 53 6e-07
Alignment gi|NP_598820.2| probable ATP-dependent RNA helicase DDX41 [Mus ... 51 2e-06
>ref|NP_001152974.1| ATP-dependent RNA helicase DDX24 isoform 1 [Mus musculus].
Length = 903
Score = 467 bits (1202), Expect = e-132
Identities = 263/426 (61%), Positives = 302/426 (70%), Gaps = 9/426 (2%)
Frame = +2
Query: 29 TMKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCFEELTDYRLV 208
TMK+KET S+PK S G FQRKGIK+VGKWKQV IDPN+FADGQMDDLVCFEELTDYRLV
Sbjct: 46 TMKVKETNSKPKLASRGTFQRKGIKIVGKWKQVTIDPNLFADGQMDDLVCFEELTDYRLV 105
Query: 209 SPAKNSSNLFLKEESKKRKAQAVAXXXXXXXXXXXXXXXXXXXX--RDVA--AEGTSVQK 376
KN S LF EE+KKRKAQAV+ RD A AEG + Q
Sbjct: 106 ---KNPSRLFSSEETKKRKAQAVSEEEEEEEGQSSSPKKKIKLKKQRDAARAAEGAAAQN 162
Query: 377 EFGVKDPEPEPQGDSTVCPDAEVGEMASESPAQTVPXXXXXXXXXXAEPSQGTTPKVSKR 556
E+ VK EPE QG+ T C D +VG SES AQ P + Q T+PK+ K+
Sbjct: 163 EYEVKASEPEAQGEVTACSDQKVGGAKSESLAQAAPRKKKNKGKKKLDTFQSTSPKLPKK 222
Query: 557 AK-TWMPETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILG 733
+K TWM E HD KADVSAW+DLFVPK VLRALSFLGFSAPTPIQALTLAPAIRDKLDILG
Sbjct: 223 SKKTWMAEVHDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILG 282
Query: 734 AAETGSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTE 913
AAETGSGKTLAFAIPMIH+VLQW K P P+ +TG PP E A +GSP + TE
Sbjct: 283 AAETGSGKTLAFAIPMIHSVLQWHKMKAP-PIPRSTGMPPREMRFGATAHLGSPCKDRTE 341
Query: 914 SGALPDKIGIDSEALPSEAGA----KTSATTADQVLPSHDADDAGEGPSSLIREKPVPKQ 1081
SG LP++ I++EA PS++G +TSA+ + Q L D DDAGEGPSSL EKPVPKQ
Sbjct: 342 SGVLPEEARIETEAQPSDSGVQATPETSASASAQTLLVCD-DDAGEGPSSL-EEKPVPKQ 399
Query: 1082 DENKEEKLDEEHSRELNQELNSKIATSEAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKF 1261
+E+ EEK D E + +L QEL +IA + HP+RPLLGLVLTPTRELA+QV+QHIDAVAKF
Sbjct: 400 NEDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKF 459
Query: 1262 TGIXTA 1279
TGI TA
Sbjct: 460 TGINTA 465
>ref|NP_065240.2| ATP-dependent RNA helicase DDX24 isoform 2 [Mus musculus].
Length = 857
Score = 465 bits (1197), Expect = e-131
Identities = 262/425 (61%), Positives = 301/425 (70%), Gaps = 9/425 (2%)
Frame = +2
Query: 32 MKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCFEELTDYRLVS 211
MK+KET S+PK S G FQRKGIK+VGKWKQV IDPN+FADGQMDDLVCFEELTDYRLV
Sbjct: 1 MKVKETNSKPKLASRGTFQRKGIKIVGKWKQVTIDPNLFADGQMDDLVCFEELTDYRLV- 59
Query: 212 PAKNSSNLFLKEESKKRKAQAVAXXXXXXXXXXXXXXXXXXXX--RDVA--AEGTSVQKE 379
KN S LF EE+KKRKAQAV+ RD A AEG + Q E
Sbjct: 60 --KNPSRLFSSEETKKRKAQAVSEEEEEEEGQSSSPKKKIKLKKQRDAARAAEGAAAQNE 117
Query: 380 FGVKDPEPEPQGDSTVCPDAEVGEMASESPAQTVPXXXXXXXXXXAEPSQGTTPKVSKRA 559
+ VK EPE QG+ T C D +VG SES AQ P + Q T+PK+ K++
Sbjct: 118 YEVKASEPEAQGEVTACSDQKVGGAKSESLAQAAPRKKKNKGKKKLDTFQSTSPKLPKKS 177
Query: 560 K-TWMPETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGA 736
K TWM E HD KADVSAW+DLFVPK VLRALSFLGFSAPTPIQALTLAPAIRDKLDILGA
Sbjct: 178 KKTWMAEVHDQKADVSAWRDLFVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGA 237
Query: 737 AETGSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTES 916
AETGSGKTLAFAIPMIH+VLQW K P P+ +TG PP E A +GSP + TES
Sbjct: 238 AETGSGKTLAFAIPMIHSVLQWHKMKAP-PIPRSTGMPPREMRFGATAHLGSPCKDRTES 296
Query: 917 GALPDKIGIDSEALPSEAGA----KTSATTADQVLPSHDADDAGEGPSSLIREKPVPKQD 1084
G LP++ I++EA PS++G +TSA+ + Q L D DDAGEGPSSL EKPVPKQ+
Sbjct: 297 GVLPEEARIETEAQPSDSGVQATPETSASASAQTLLVCD-DDAGEGPSSL-EEKPVPKQN 354
Query: 1085 ENKEEKLDEEHSRELNQELNSKIATSEAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFT 1264
E+ EEK D E + +L QEL +IA + HP+RPLLGLVLTPTRELA+QV+QHIDAVAKFT
Sbjct: 355 EDGEEKFDAEQAGKLKQELCDQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFT 414
Query: 1265 GIXTA 1279
GI TA
Sbjct: 415 GINTA 419
>ref|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [Mus musculus].
Length = 819
Score = 57.4 bits (137), Expect = 2e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 389 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 447
Query: 779 MI 784
++
Sbjct: 448 LL 449
>ref|NP_001177724.1| ATP-dependent RNA helicase DDX55 isoform 2 [Mus musculus].
Length = 596
Score = 56.6 bits (135), Expect = 4e-08
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Frame = +2
Query: 605 AWKDLFVP--KPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
AW+ L VP VL AL LGF TP+Q+ T+ +++K D+ A TGSGKTLAF IP
Sbjct: 8 AWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNK-DVAAEAVTGSGKTLAFVIP 66
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
++ +L+ + K K V + P E + +
Sbjct: 67 ILEILLRREEKLKKNQVGAIVITPTRELAIQ 97
>ref|NP_080685.2| ATP-dependent RNA helicase DDX55 isoform 1 [Mus musculus].
Length = 600
Score = 56.6 bits (135), Expect = 4e-08
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Frame = +2
Query: 605 AWKDLFVP--KPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
AW+ L VP VL AL LGF TP+Q+ T+ +++K D+ A TGSGKTLAF IP
Sbjct: 8 AWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNK-DVAAEAVTGSGKTLAFVIP 66
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
++ +L+ + K K V + P E + +
Sbjct: 67 ILEILLRREEKLKKNQVGAIVITPTRELAIQ 97
>ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus].
Length = 455
Score = 54.7 bits (130), Expect = 2e-07
Identities = 30/75 (40%), Positives = 48/75 (64%)
Frame = +2
Query: 575 ETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSG 754
+T + + +KDL V + A LG++ PT IQ + A++ + DI+G AETGSG
Sbjct: 15 QTAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR-DIIGLAETGSG 73
Query: 755 KTLAFAIPMIHAVLQ 799
KT AFA+P+++A+L+
Sbjct: 74 KTGAFALPILNALLE 88
>ref|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus musculus].
Length = 1031
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/91 (29%), Positives = 48/91 (52%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +W + +L +L G+ PTPIQ + PAI D++G A+TGSGKT+AF +P
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAI-PAIMSGRDLIGIAKTGSGKTIAFLLP 429
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
M ++ + ++ ++ P E + +
Sbjct: 430 MFRHIMDQRSLEEGEGPIAVIMTPTRELALQ 460
>ref|NP_084212.2| probable ATP-dependent RNA helicase DDX10 [Mus musculus].
Length = 875
Score = 52.8 bits (125), Expect = 6e-07
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +2
Query: 596 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 775
+++ + D + K L+ L + T IQ T+ A++ K D+LGAA+TGSGKTLAF +
Sbjct: 67 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGK-DVLGAAKTGSGKTLAFLV 125
Query: 776 PMIHAV--LQW 802
P++ A+ LQW
Sbjct: 126 PVLEALYRLQW 136
>ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus].
Length = 760
Score = 52.8 bits (125), Expect = 6e-07
Identities = 24/64 (37%), Positives = 43/64 (67%)
Frame = +2
Query: 605 AWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMI 784
+++D+ + +P+L+A++ +GF PTPIQ + + K DI A TG+GKT AFA+P++
Sbjct: 185 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGK-DICACAATGTGKTAAFALPVL 243
Query: 785 HAVL 796
++
Sbjct: 244 ERLI 247
>ref|NP_598820.2| probable ATP-dependent RNA helicase DDX41 [Mus musculus].
Length = 622
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/74 (40%), Positives = 43/74 (58%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ ++K++ P +LR L G PTPIQ + P I D++G A TGSGKTL F +P
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGI-PTILSGRDMIGIAFTGSGKTLVFTLP 238
Query: 779 MIHAVLQWQVKKKP 820
+I L+ Q K+ P
Sbjct: 239 VIMFCLE-QEKRLP 251
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,958,955
Number of extensions: 967995
Number of successful extensions: 4311
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4196
Number of HSP's successfully gapped: 11
Length of query: 426
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 322
Effective length of database: 12,493,815
Effective search space: 4023008430
Effective search space used: 4023008430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013834
(1280 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065147.1| ATP-dependent RNA helicase DDX24 [Homo sapiens]. 545 e-155
Alignment gi|NP_004809.2| probable ATP-dependent RNA helicase DDX23 [Homo... 57 3e-08
Alignment gi|NP_065987.1| ATP-dependent RNA helicase DDX55 [Homo sapiens]. 57 5e-08
Alignment gi|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo... 56 6e-08
Alignment gi|NP_957518.1| probable ATP-dependent RNA helicase DDX47 isofo... 56 6e-08
Alignment gi|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isofo... 56 6e-08
Alignment gi|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo... 54 2e-07
Alignment gi|NP_004389.2| probable ATP-dependent RNA helicase DDX10 [Homo... 53 7e-07
Alignment gi|NP_057306.2| probable ATP-dependent RNA helicase DDX41 [Homo... 51 2e-06
Alignment gi|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Hom... 49 8e-06
>ref|NP_065147.1| ATP-dependent RNA helicase DDX24 [Homo sapiens].
Length = 859
Score = 545 bits (1405), Expect = e-155
Identities = 297/422 (70%), Positives = 321/422 (76%), Gaps = 6/422 (1%)
Frame = +2
Query: 32 MKLKETKSRPKPPSCGKFQRKGIKVVGKWKQVKIDPNMFADGQMDDLVCFEELTDYRLVS 211
MKLK+TKSRPK SCGKFQ KGIKVVGKWK+VKIDPNMFADGQMDDLVCFEELTDY+LVS
Sbjct: 1 MKLKDTKSRPKQSSCGKFQTKGIKVVGKWKEVKIDPNMFADGQMDDLVCFEELTDYQLVS 60
Query: 212 PAKNSSNLFLKEESKKRKAQAVAXXXXXXXXXXXXXXXXXXXXR--DVAAEGTSVQKEFG 385
PAKN S+LF KE + KRKAQAV+ + +VA EGTS QKEF
Sbjct: 61 PAKNPSSLFSKE-APKRKAQAVSEEEEEEEGKSSSPKKKIKLKKSKNVATEGTSTQKEFE 119
Query: 386 VKDPEPEPQGDSTVCPDAEVGEMASESPAQTVPXXXXXXXXXXAEPSQGTTPKVSKRAKT 565
VKDPE E QGD VC D E GEM SE+ QT P EPSQ T KV K+AKT
Sbjct: 120 VKDPELEAQGDDMVCDDPEAGEMTSENLVQTAPKKKKNKGKKGLEPSQSTAAKVPKKAKT 179
Query: 566 WMPETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAET 745
W+PE HD KADVSAWKDLFVP+PVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAET
Sbjct: 180 WIPEVHDQKADVSAWKDLFVPRPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAET 239
Query: 746 GSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTESGAL 925
GSGKTLAFAIPMIHAVLQWQ K+ P S T APP ET TE GAE SPG+A ES AL
Sbjct: 240 GSGKTLAFAIPMIHAVLQWQ-KRNAAPPPSNTEAPPGETRTEAGAETRSPGKAEAESDAL 298
Query: 926 PDKIGIDSEALPS----EAGAKTSATTADQVLPSHDADDAGEGPSSLIREKPVPKQDENK 1093
PD I+SEALPS EA AKT T +DQ L D DDAGEGPSSLIREKPVPKQ+EN+
Sbjct: 299 PDDTVIESEALPSDIAAEARAKTGGTVSDQALLFGD-DDAGEGPSSLIREKPVPKQNENE 357
Query: 1094 EEKLDEEHSRELNQELNSKIATSEAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIX 1273
EE LD+E + L QEL+ K AT +A+PKRPLLGLVLTPTRELAVQVKQHIDAVA+FTGI
Sbjct: 358 EENLDKEQTGNLKQELDDKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIK 417
Query: 1274 TA 1279
TA
Sbjct: 418 TA 419
>ref|NP_004809.2| probable ATP-dependent RNA helicase DDX23 [Homo sapiens].
Length = 820
Score = 57.4 bits (137), Expect = 3e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +WKD +P +L + G+ PTPIQ + ++++ DI+G AETGSGKT AF IP
Sbjct: 390 IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTAAFLIP 448
Query: 779 MI 784
++
Sbjct: 449 LL 450
>ref|NP_065987.1| ATP-dependent RNA helicase DDX55 [Homo sapiens].
Length = 600
Score = 56.6 bits (135), Expect = 5e-08
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +2
Query: 605 AWKDLFVP--KPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+W+ L VP VL AL LGF TP+Q+ T+ +R+K D+ A TGSGKTLAF IP
Sbjct: 8 SWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNK-DVAAEAVTGSGKTLAFVIP 66
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
++ +L+ + K K + V + P E + +
Sbjct: 67 ILEILLRREEKLKKSQVGAIIITPTRELAIQ 97
>ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens].
Length = 796
Score = 56.2 bits (134), Expect = 6e-08
Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 1/265 (0%)
Frame = +2
Query: 344 DVAAEGTSVQKEFGVKD-PEPEPQGDSTVCPDAEVGEMASESPAQTVPXXXXXXXXXXAE 520
D A+ ++KE K+ EP+ Q D + + ASE+ +
Sbjct: 132 DKEAKSGKLEKEKEAKEGSEPKEQEDLQENDEEGSEDEASETDYSSADENILTKADTLKV 191
Query: 521 PSQGTTPKVSKRAKTWMPETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLA 700
+ K + A + + + ++S ++D+ + +P+L+A++ +GF PTPIQ +
Sbjct: 192 KDRKKKKKKGQEAGGFFEDASQYDENLS-FQDMNLSRPLLKAITAMGFKQPTPIQKACIP 250
Query: 701 PAIRDKLDILGAAETGSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGA 880
+ K DI A TG+GKT AFA+P++ ++ K + PV P + E G
Sbjct: 251 VGLLGK-DICACAATGTGKTAAFALPVLERLI---YKPRQAPVTRVLVLVP---TRELGI 303
Query: 881 EIGSPGRAGTESGALPDKIGIDSEALPSEAGAKTSATTADQVLPSHDADDAGEGPSSLIR 1060
++ S R + + + + + S+ A +A P D PS +
Sbjct: 304 QVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLS 363
Query: 1061 EKPVPKQDENKEEKLDEEHSRELNQ 1135
V DE + LDE ++ +
Sbjct: 364 SIEVLILDE-ADRMLDEYFEEQMKE 387
>ref|NP_957518.1| probable ATP-dependent RNA helicase DDX47 isoform 2 [Homo sapiens].
Length = 406
Score = 56.2 bits (134), Expect = 6e-08
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Frame = +2
Query: 572 PETHDHKADVS----------AWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKL 721
PE HD + S +KDL V + A LG++ PT IQ + A++ +
Sbjct: 4 PEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR- 62
Query: 722 DILGAAETGSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGR 901
DI+G AETGSGKT AFA+P+++A+L+ P + + P E + + + + G
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLE-----TPQRLFALVLTPTRELAFQISEQFEALGS 117
Query: 902 A-GTESGALPDKIGIDS 949
+ G +S + GIDS
Sbjct: 118 SIGVQSAVIVG--GIDS 132
>ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens].
Length = 455
Score = 56.2 bits (134), Expect = 6e-08
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Frame = +2
Query: 572 PETHDHKADVS----------AWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKL 721
PE HD + S +KDL V + A LG++ PT IQ + A++ +
Sbjct: 4 PEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGR- 62
Query: 722 DILGAAETGSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGR 901
DI+G AETGSGKT AFA+P+++A+L+ P + + P E + + + + G
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALLE-----TPQRLFALVLTPTRELAFQISEQFEALGS 117
Query: 902 A-GTESGALPDKIGIDS 949
+ G +S + GIDS
Sbjct: 118 SIGVQSAVIVG--GIDS 132
>ref|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo sapiens].
Length = 1031
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/91 (29%), Positives = 48/91 (52%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ +W + +L +L G+ PTPIQ + PAI D++G A+TGSGKT+AF +P
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAI-PAIMSGRDLIGIAKTGSGKTIAFLLP 429
Query: 779 MIHAVLQWQVKKKPTPVLSTTGAPPEETSTE 871
M ++ + ++ ++ P E + +
Sbjct: 430 MFRHIMDQRSLEEGEGPIAVIMTPTRELALQ 460
>ref|NP_004389.2| probable ATP-dependent RNA helicase DDX10 [Homo sapiens].
Length = 875
Score = 52.8 bits (125), Expect = 7e-07
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +2
Query: 596 DVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAI 775
+++ + D + K L+ L + T IQ T+ A++ K D+LGAA+TGSGKTLAF +
Sbjct: 67 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGK-DVLGAAKTGSGKTLAFLV 125
Query: 776 PMIHAV--LQW 802
P++ A+ LQW
Sbjct: 126 PVLEALYRLQW 136
>ref|NP_057306.2| probable ATP-dependent RNA helicase DDX41 [Homo sapiens].
Length = 622
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/74 (40%), Positives = 43/74 (58%)
Frame = +2
Query: 599 VSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIP 778
+ ++K++ P +LR L G PTPIQ + P I D++G A TGSGKTL F +P
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGI-PTILSGRDMIGIAFTGSGKTLVFTLP 238
Query: 779 MIHAVLQWQVKKKP 820
+I L+ Q K+ P
Sbjct: 239 VIMFCLE-QEKRLP 251
>ref|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Homo sapiens].
Length = 881
Score = 49.3 bits (116), Expect = 8e-06
Identities = 27/87 (31%), Positives = 42/87 (48%)
Frame = +2
Query: 521 PSQGTTPKVSKRAKTWMPETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLA 700
P+ T V + + + K ++ + + PV + + G+ PTPIQ T+
Sbjct: 69 PTSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTI- 127
Query: 701 PAIRDKLDILGAAETGSGKTLAFAIPM 781
P I D D++ A TGSGKT F +PM
Sbjct: 128 PVILDGKDVVAMARTGSGKTACFLLPM 154
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,800,461
Number of extensions: 1143584
Number of successful extensions: 5039
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4957
Number of HSP's successfully gapped: 11
Length of query: 426
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 321
Effective length of database: 14,835,944
Effective search space: 4762338024
Effective search space used: 4762338024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013834
(1280 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1011 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1011 bits (510), Expect = 0.0
Identities = 519/522 (99%)
Strand = Plus / Minus
Query: 745 aggaagtgggaaaactcttgcctttgccattccaatgattcatgcagtgctgcagtggca 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122197136 aggaagtgggaaaactcttgcctttgccattccaatgattcatgcagtgctgcagtggca 122197077
Query: 805 ggtgaagaagaagcctaccccagttctaagtaccacaggagcaccacctgaggagaccag 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122197076 ggtgaagaagaagcctaccccagttctaagtaccacaggagcaccacctgaggagaccag 122197017
Query: 865 tactgagcctggagctgagataggctcaccaggcagggctggaacggagtctggagcttt 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122197016 tactgagcctggagctgagataggctcaccaggcagggctggaacggagtctggagcttt 122196957
Query: 925 gcctgataagattggaattgacagtgaagcacttcccagtgaggctggagccaagaccag 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122196956 gcctgataagattggaattgacagtgaagcacttcccagtgaggctggagccaagaccag 122196897
Query: 985 tgctactaccgcagaccaggtgctgccctctcatgatgctgatgatgctggtgaaggacc 1044
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122196896 tgctaccaccgcagaccaggtgctgccctctcatgatgctgatgatgctggtgaaggacc 122196837
Query: 1045 ttcttccctgatcagggagaagcctgtccccaagcaggatgaaaacaaggaggaaaagct 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122196836 ttcttccctgatcagggagaagcctgtccccaagcaggatgaaaacaaggaggaaaagct 122196777
Query: 1105 tgatgaagagcattccagagagttaaatcaagagctgaacagcaaaattgccacctctga 1164
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 122196776 tgatgaagagcattccggagagttaaaacaagagctgaacagcaaaattgccacctctga 122196717
Query: 1165 agcacatccaaagcgtcccctgcttggactggttctgactcctactcgagagctagccgt 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122196716 agcacatccaaagcgtcccctgcttggactggttctgactcctactcgagagctagccgt 122196657
Query: 1225 tcaagtcaaacaacacattgatgctgtggccaagtttacagg 1266
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122196656 tcaagtcaaacaacacattgatgctgtggccaagtttacagg 122196615
Score = 892 bits (450), Expect = 0.0
Identities = 456/458 (99%)
Strand = Plus / Minus
Query: 26 gtaaccatgaagttgaaggagacaaaatcaaggccaaagccaccaagctgtggcaaattt 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205780 gtaaccatgaagttgaaggagacaaaatcaaggccaaagccaccaagctgtggcaaattt 122205721
Query: 86 cagaggaaaggaatcaaagttgtgggaaaatggaagcaggtgaagattgatccaaacatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205720 cagaggaaaggaatcaaagttgtgggaaaatggaagcaggtgaagattgatccaaacatg 122205661
Query: 146 tttgcagacggacagatggatgatttggtttgttttgaggaactgacagattaccggtta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205660 tttgcagacggacagatggatgatttggtttgttttgaggaactgacagattaccggtta 122205601
Query: 206 gtctcccctgccaagaattcctccaatctcttcttaaaagaggagtccaagaagagaaag 265
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 122205600 gtctcccctgccaagaattcctccagtctcttcttaaaagaggagtccaagaagagaaag 122205541
Query: 266 gcacaagctgttgcagagggagaggaggaaggagaatctagctcctcaaagaaaaagatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205540 gcacaagctgttgcagagggagaggaggaaggagaatctagctcctcaaagaaaaagatg 122205481
Query: 326 aaattgaagaagagtagagatgtggcagctgaaggaaccagtgttcagaaagagtttggg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205480 aaattgaagaagagtagagatgtggcagctgaaggaaccagtgttcagaaagagtttggg 122205421
Query: 386 gtcaaagatcctgagccagagccccagggagatagcacagtttgtcctgatgcagaggta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205420 gtcaaagatcctgagccagagccccagggagatagcacagtttgtcctgatgcagaggta 122205361
Query: 446 ggggagatggcatcagaaagcccagcgcagactgttcc 483
|||||||||||||||||||||||||| |||||||||||
Sbjct: 122205360 ggggagatggcatcagaaagcccagctcagactgttcc 122205323
Score = 452 bits (228), Expect = e-124
Identities = 231/232 (99%)
Strand = Plus / Minus
Query: 516 cagagccttctcagggtactactccaaaagtgtctaaaagagcaaagacatggatgcctg 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205290 cagagccttctcagggtactactccaaaagtgtctaaaagagcaaagacatggatgcctg 122205231
Query: 576 aaacacatgatcacaaggcagatgtatcagcttggaaggatctgtttgtacccaagccag 635
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205230 aaacgcatgatcacaaggcagatgtatcagcttggaaggatctgtttgtacccaagccag 122205171
Query: 636 ttctccgagcactcagctttctaggcttctctgcccccacaccaatccaagctctgacct 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205170 ttctccgagcactcagctttctaggcttctctgcccccacaccaatccaagctctgacct 122205111
Query: 696 tggcacctgccattcgtgacaaactggacatccttggggctgctgagacagg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122205110 tggcacctgccattcgtgacaaactggacatccttggggctgctgagacagg 122205059
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,739,318
Number of extensions: 419
Number of successful extensions: 419
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 3
Length of query: 1280
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1259
Effective length of database: 2,808,413,156
Effective search space: 3535792163404
Effective search space used: 3535792163404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)