Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013848
(1161 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537164.1| PREDICTED: similar to ring finger protein 2 iso... 587 e-168
Alignment gi|NP_001041593.1| E3 ubiquitin-protein ligase RING1 [Canis lup... 328 6e-90
Alignment gi|XP_859904.1| PREDICTED: similar to ring finger protein 2 iso... 317 1e-86
Alignment gi|XP_859868.1| PREDICTED: similar to ring finger protein 2 iso... 274 1e-73
Alignment gi|NP_001013434.1| breast cancer type 1 susceptibility protein ... 62 8e-10
Alignment gi|XP_855151.1| PREDICTED: similar to ring finger protein 3 [Ca... 57 4e-08
Alignment gi|XP_532995.2| PREDICTED: similar to polycomb group ring finge... 51 2e-06
Alignment gi|XP_545469.2| PREDICTED: similar to Tripartite motif protein ... 49 7e-06
Alignment gi|XP_537181.2| PREDICTED: similar to constitutive photomorphog... 49 9e-06
>ref|XP_537164.1| PREDICTED: similar to ring finger protein 2 isoform 2 [Canis
familiaris].
Length = 336
Score = 587 bits (1512), Expect = e-168
Identities = 292/294 (99%), Positives = 292/294 (99%)
Frame = +2
Query: 278 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 457
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
Sbjct: 1 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 60
Query: 458 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 637
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
Sbjct: 61 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 120
Query: 638 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 817
EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS
Sbjct: 121 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 180
Query: 818 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 997
NASTHSNQEAGPSNKRTKTSDDSGLELDNNNA VAIDPVMDGASEIELVFRPHPTLMEKD
Sbjct: 181 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNATVAIDPVMDGASEIELVFRPHPTLMEKD 240
Query: 998 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQMNLDTASEKQYTIY 1159
DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGE NQMNLDTASEKQYTIY
Sbjct: 241 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIY 294
>ref|NP_001041593.1| E3 ubiquitin-protein ligase RING1 [Canis lupus familiaris].
Length = 406
Score = 328 bits (841), Expect = 6e-90
Identities = 181/300 (60%), Positives = 206/300 (68%), Gaps = 40/300 (13%)
Frame = +2
Query: 308 QPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHR 487
Q SKTWELSLYEL RTPQEAI DG EI VSPRSLHSELMCPICLDMLKNTMTTKECLHR
Sbjct: 8 QNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHR 67
Query: 488 FCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLAR 667
FC+DCI+TALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR+EYEAHQ+RVL R
Sbjct: 68 FCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIR 127
Query: 668 INKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQ--------IENGSG--AEDNGDSSHCS 817
+++ +NQQALS SIEEGL++QAM+R QR ++ + G G E GD S
Sbjct: 128 LSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMPGSDQTTTMSGGEGEPGEGEGDGEDVS 187
Query: 818 NASTHSNQEAGPSNKRTKT-----------------------SDDSGLELDNNNAAVAID 928
+ S + GP+ KR + S+DSG
Sbjct: 188 SDSA-PDSAPGPAPKRPRGGGAGGSSVGTGGGGAGGVGGGAGSEDSGDRGGTLGGGTLGP 246
Query: 929 PVMDGA-------SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALE 1087
P GA EIELVFRPHP L+EK + QTRY+KT+GNATVDHLSKYLA+R+ALE
Sbjct: 247 PSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALE 306
>ref|XP_859904.1| PREDICTED: similar to ring finger protein 2 isoform 4 [Canis
familiaris].
Length = 245
Score = 317 bits (812), Expect = 1e-86
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +2
Query: 278 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 457
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
Sbjct: 1 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 60
Query: 458 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 637
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
Sbjct: 61 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 120
Query: 638 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNR 742
EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNR
Sbjct: 121 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNR 155
Score = 97.8 bits (242), Expect = 2e-20
Identities = 49/52 (94%), Positives = 49/52 (94%)
Frame = +2
Query: 1004 AQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQMNLDTASEKQYTIY 1159
A RYIKTSGNATVDHLSKYLAVRLALEELRSKGE NQMNLDTASEKQYTIY
Sbjct: 152 AMNRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIY 203
>ref|XP_859868.1| PREDICTED: similar to ring finger protein 2 isoform 3 [Canis
familiaris].
Length = 264
Score = 274 bits (700), Expect = 1e-73
Identities = 137/139 (98%), Positives = 137/139 (98%)
Frame = +2
Query: 743 LQRGKKQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVA 922
LQRGKKQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNA VA
Sbjct: 84 LQRGKKQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNATVA 143
Query: 923 IDPVMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSK 1102
IDPVMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSK
Sbjct: 144 IDPVMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSK 203
Query: 1103 GEFNQMNLDTASEKQYTIY 1159
GE NQMNLDTASEKQYTIY
Sbjct: 204 GESNQMNLDTASEKQYTIY 222
Score = 172 bits (436), Expect = 5e-43
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +2
Query: 278 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 457
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
Sbjct: 1 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 60
Query: 458 TMTTKECLHRFCADCIITALRSG 526
TMTTKECLHRFCADCIITALRSG
Sbjct: 61 TMTTKECLHRFCADCIITALRSG 83
>ref|NP_001013434.1| breast cancer type 1 susceptibility protein homolog [Canis lupus
familiaris].
Length = 1878
Score = 62.4 bits (150), Expect = 8e-10
Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 27/247 (10%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITAL--RSGNKECPTCRKKLVSKRSLRPDPNF 595
L CPICL+++K ++TK C H FC C++ L R G +CP C K ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQRKGPSQCPLC-KNDITKRSLQESTRF 79
Query: 596 DALISKIYPSRDEYEAHQERVLAR----INKHNNQQALSHSIEEGLKIQAMNRLQRGKK- 760
L+ ++ +E A K NN H EE IQ+M R K+
Sbjct: 80 SQLVEELLKIIHAFELDTGLQFADSYNFSKKENNSP--EHLKEEVSIIQSMGYRNRAKRL 137
Query: 761 QQIENGSGAEDNGDSSHCSN----ASTHSNQEAGPSNKR------TKTSDDS-------- 886
+Q E + + S SN S + Q+ P NK + +S+D+
Sbjct: 138 RQSEPENPTLETSLSVQLSNLGIVRSLRTKQQIQPQNKSVYIELGSDSSEDTVNKASSCS 197
Query: 887 --GLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSK 1060
EL+ + + ++ A + F T +E S+ T +AT H K
Sbjct: 198 VGDDELEITSQGARAEASLNPAKKAACEFSGDITNIEHHQSSNKDLTTTEKHATKKHPEK 257
Query: 1061 YLAVRLA 1081
Y + ++
Sbjct: 258 YQGISVS 264
>ref|XP_855151.1| PREDICTED: similar to ring finger protein 3 [Canis familiaris].
Length = 264
Score = 56.6 bits (135), Expect = 4e-08
Identities = 58/266 (21%), Positives = 100/266 (37%), Gaps = 12/266 (4%)
Frame = +2
Query: 365 EAITDGLEIVVSPRSL---------HSELMCPICLDMLKNTMTTKECLHRFCADCIITAL 517
E GL +V P+ L ++ + C +C L + T ECLH FC C++ L
Sbjct: 9 EQRASGLPLVQKPKMLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYL 68
Query: 518 RSGNKECPTCRKKLVSKRSLR---PDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQ 688
N CPTCR + L+ D ++ K+ P E E ++R +
Sbjct: 69 EE-NNTCPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMRKQR--------DFY 119
Query: 689 QALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRT 868
L + +K + + KQ ++ E D S SN+EA
Sbjct: 120 HKLGMEVPGDVKGETCS-----AKQHLDPHRNGETKADDS--------SNKEAA----EE 162
Query: 869 KTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVD 1048
K +D+ + ++ ++ K + ++I+ S ATV
Sbjct: 163 KQEEDNDYHRSDEQVSICLE-----------------CNSSKLRGLKRKWIRCSAQATVL 205
Query: 1049 HLSKYLAVRLALEELRSKGEFNQMNL 1126
HL K++A +L L FN++++
Sbjct: 206 HLKKFIAKKLNL------SSFNELDI 225
>ref|XP_532995.2| PREDICTED: similar to polycomb group ring finger 1 [Canis
familiaris].
Length = 259
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Frame = +2
Query: 386 EIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 565
E+ V + L+ ++C +C + T ECLH FC CI+ L++ +K CP C K+
Sbjct: 33 EVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQT-SKYCPMCNIKIHE 91
Query: 566 KR---SLRPDPNFDALISKIYPSRDEYEA------HQERVLARINKHNNQQ-ALSH 703
+ +L+ D ++ K+ P + E +Q R L R+ + + ++ ALS+
Sbjct: 92 TQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSRGLDRVTQPSGEEPALSN 147
>ref|XP_545469.2| PREDICTED: similar to Tripartite motif protein 26 (Zinc finger
protein 173) (Acid finger protein) (AFP) (RING finger
protein 95) [Canis familiaris].
Length = 509
Score = 49.3 bits (116), Expect = 7e-06
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Frame = +2
Query: 404 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCI--ITALRSGNKECPTCRKKLVSKRSL 577
RSL E+ C ICLD L++ +T +C H FC C + + G CP C KK K ++
Sbjct: 8 RSLEEEVTCSICLDYLRDPVTI-DCGHVFCRGCTTDVRPVSGGRPVCPLC-KKPFKKENI 65
Query: 578 RPDPNFDALIS-----KIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNR 742
RP +L+ K+ +R + +E AR+ + ++++ + ++G + M R
Sbjct: 66 RPVWQLASLVENIERLKVDKTRQPGDVAREPPDARLCERHHEKLHYYCEDDGKLLCVMCR 125
Query: 743 LQR 751
R
Sbjct: 126 ESR 128
>ref|XP_537181.2| PREDICTED: similar to constitutive photomorphogenic protein 1
[Canis familiaris].
Length = 733
Score = 48.9 bits (115), Expect = 9e-06
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Frame = +2
Query: 416 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 595
++ +CPIC DM++ TK C H FC CI +L N+ CP C + + L P+
Sbjct: 134 NDFVCPICFDMIEEAYMTK-CGHSFCYKCIHQSLEDNNR-CPKCNYVVDNIDHLYPNFLV 191
Query: 596 DALISKIYPSRDEYEAHQERVLARINKHNNQ--QALSHSIEEGLKIQAMN---RLQRGKK 760
+ LI K +E + ++ N H Q Q L + ++ L + +N L KK
Sbjct: 192 NELILKQKQRFEEKRFKLDHSVSSTNGHRWQILQDLLGTDQDNLDLANVNLMLELLVQKK 251
Query: 761 QQIENGSGA 787
+Q+E S A
Sbjct: 252 KQLEAESHA 260
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,897,356
Number of extensions: 834168
Number of successful extensions: 3079
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3036
Number of HSP's successfully gapped: 11
Length of query: 387
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 282
Effective length of database: 15,374,224
Effective search space: 4335531168
Effective search space used: 4335531168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013848
(1161 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094673.1| E3 ubiquitin-protein ligase RING2 [Bos tauru... 587 e-168
Alignment gi|NP_001098521.1| E3 ubiquitin-protein ligase RING1 [Bos tauru... 328 6e-90
Alignment gi|NP_848668.1| breast cancer type 1 susceptibility protein hom... 55 1e-07
Alignment gi|NP_001040032.1| polycomb group RING finger protein 3 [Bos ta... 55 1e-07
Alignment gi|NP_001033263.1| E3 ubiquitin-protein ligase RNF138 [Bos taur... 53 4e-07
Alignment gi|XP_002697385.1| PREDICTED: tripartite motif-containing 26 [B... 53 4e-07
Alignment gi|XP_581015.1| PREDICTED: tripartite motif-containing 26 isofo... 53 4e-07
Alignment gi|XP_001250768.1| PREDICTED: tripartite motif-containing 26 [B... 53 4e-07
Alignment gi|NP_001137578.1| polycomb group RING finger protein 2 [Bos ta... 52 1e-06
Alignment gi|NP_001096726.1| E3 ubiquitin-protein ligase RFWD2 [Bos tauru... 51 2e-06
>ref|NP_001094673.1| E3 ubiquitin-protein ligase RING2 [Bos taurus].
Length = 336
Score = 587 bits (1512), Expect = e-168
Identities = 292/294 (99%), Positives = 292/294 (99%)
Frame = +2
Query: 278 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 457
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
Sbjct: 1 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 60
Query: 458 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 637
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
Sbjct: 61 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 120
Query: 638 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 817
EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS
Sbjct: 121 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 180
Query: 818 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 997
NASTHSNQEAGPSNKRTKTSDDSGLELDNNNA VAIDPVMDGASEIELVFRPHPTLMEKD
Sbjct: 181 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNATVAIDPVMDGASEIELVFRPHPTLMEKD 240
Query: 998 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQMNLDTASEKQYTIY 1159
DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGE NQMNLDTASEKQYTIY
Sbjct: 241 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIY 294
>ref|NP_001098521.1| E3 ubiquitin-protein ligase RING1 [Bos taurus].
Length = 407
Score = 328 bits (841), Expect = 6e-90
Identities = 181/300 (60%), Positives = 206/300 (68%), Gaps = 40/300 (13%)
Frame = +2
Query: 308 QPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHR 487
Q SKTWELSLYEL RTPQEAI DG EI VSPRSLHSELMCPICLDMLKNTMTTKECLHR
Sbjct: 8 QNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHR 67
Query: 488 FCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLAR 667
FC+DCI+TALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR+EYEAHQ+RVL R
Sbjct: 68 FCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIR 127
Query: 668 INKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQ--------IENGSG--AEDNGDSSHCS 817
+++ +NQQALS SIEEGL++QAM+R QR ++ + G G E GD S
Sbjct: 128 LSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMPGSDQTTTMSGGEGEPGEGEGDGEDVS 187
Query: 818 NASTHSNQEAGPSNKRTKT-----------------------SDDSGLELDNNNAAVAID 928
+ S + GP+ KR + S+DSG
Sbjct: 188 SDSA-PDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGP 246
Query: 929 PVMDGA-------SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALE 1087
P GA EIELVFRPHP L+EK + QTRY+KT+GNATVDHLSKYLA+R+ALE
Sbjct: 247 PSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALE 306
>ref|NP_848668.1| breast cancer type 1 susceptibility protein homolog [Bos taurus].
Length = 1849
Score = 55.1 bits (131), Expect = 1e-07
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITAL--RSGNKECPTCRKKLVSKRSLRPDPNF 595
L CPICL+++K ++TK C H FC C++ L + G +CP C K ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLC-KNDITKRSLQESTRF 79
Query: 596 DALISKIYPSRDEYEAHQERVLARINKHN----NQQALSHSIEEGLKIQAMNRLQRGKK 760
L+ ++ +E + L N +N + H EE IQ+M R K+
Sbjct: 80 SQLVEELLKIIHAFEL--DTGLQFANSYNFSRKEDNSPEHLKEEVSIIQSMGYRNRAKR 136
>ref|NP_001040032.1| polycomb group RING finger protein 3 [Bos taurus].
Length = 242
Score = 55.1 bits (131), Expect = 1e-07
Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 3/242 (1%)
Frame = +2
Query: 410 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR--- 580
+++ + C +C L + T ECLH FC C++ L N CPTCR + L+
Sbjct: 11 INAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEE-NNTCPTCRIVIHQSHPLQYIG 69
Query: 581 PDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKK 760
D ++ K+ P E E ++R L + +K + + K
Sbjct: 70 HDRTMQDIVYKLVPGLQEAEMRKQREF--------YHKLGLEVPGDIKGETCS-----AK 116
Query: 761 QQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMD 940
Q ++ E D S A+ +E G + ++ + + L+ N++
Sbjct: 117 QHLDPHRNGETKADDSSNKEAAEEKQEEDGDYH---RSDEQVSICLECNSS--------- 164
Query: 941 GASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQM 1120
K + ++I+ S ATV HL K++A +L L FN++
Sbjct: 165 -----------------KLRGLKRKWIRCSAQATVLHLKKFIAKKLNL------SSFNEL 201
Query: 1121 NL 1126
++
Sbjct: 202 DI 203
>ref|NP_001033263.1| E3 ubiquitin-protein ligase RNF138 [Bos taurus].
Length = 245
Score = 53.1 bits (126), Expect = 4e-07
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 386 EIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 565
E+ + + CP+C ++LK + T C H FC C +TA+R CP CR +
Sbjct: 4 ELSAATSYTEDDFYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGNVTR 63
Query: 566 KRSLRPDPNFD 598
+ P+ D
Sbjct: 64 RERACPERALD 74
>ref|XP_002697385.1| PREDICTED: tripartite motif-containing 26 [Bos taurus].
Length = 539
Score = 53.1 bits (126), Expect = 4e-07
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Frame = +2
Query: 404 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCI--ITALRSGNKECPTCRKKLVSKRSL 577
RSL E+ C ICLD L++ +T +C H FC C I ++ G CP C KK K ++
Sbjct: 8 RSLEEEVTCSICLDYLRDPVTI-DCGHVFCRSCTTDIRSISGGRPVCPLC-KKPFKKENI 65
Query: 578 RPDPNFDALIS-----KIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNR 742
RP +L+ K+ R E QE+ R+ + + ++ + ++G + M R
Sbjct: 66 RPVWQLASLVENIERLKVDRGRQPGEVAQEQADVRLCERHREKLHYYCEDDGKLLCVMCR 125
Query: 743 LQR 751
R
Sbjct: 126 ESR 128
>ref|XP_581015.1| PREDICTED: tripartite motif-containing 26 isoform 1 [Bos taurus].
Length = 539
Score = 53.1 bits (126), Expect = 4e-07
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Frame = +2
Query: 404 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCI--ITALRSGNKECPTCRKKLVSKRSL 577
RSL E+ C ICLD L++ +T +C H FC C I ++ G CP C KK K ++
Sbjct: 8 RSLEEEVTCSICLDYLRDPVTI-DCGHVFCRSCTTDIRSISGGRPVCPLC-KKPFKKENI 65
Query: 578 RPDPNFDALIS-----KIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNR 742
RP +L+ K+ R E QE+ R+ + + ++ + ++G + M R
Sbjct: 66 RPVWQLASLVENIERLKVDRGRQPGEVAQEQADVRLCERHREKLHYYCEDDGKLLCVMCR 125
Query: 743 LQR 751
R
Sbjct: 126 ESR 128
>ref|XP_001250768.1| PREDICTED: tripartite motif-containing 26 [Bos taurus].
Length = 539
Score = 53.1 bits (126), Expect = 4e-07
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Frame = +2
Query: 404 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCI--ITALRSGNKECPTCRKKLVSKRSL 577
RSL E+ C ICLD L++ +T +C H FC C I ++ G CP C KK K ++
Sbjct: 8 RSLEEEVTCSICLDYLRDPVTI-DCGHVFCRSCTTDIRSISGGRPVCPLC-KKPFKKENI 65
Query: 578 RPDPNFDALIS-----KIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNR 742
RP +L+ K+ R E QE+ R+ + + ++ + ++G + M R
Sbjct: 66 RPVWQLASLVENIERLKVDRGRQPGEVAQEQADVRLCERHREKLHYYCEDDGKLLCVMCR 125
Query: 743 LQR 751
R
Sbjct: 126 ESR 128
>ref|NP_001137578.1| polycomb group RING finger protein 2 [Bos taurus].
Length = 344
Score = 51.6 bits (122), Expect = 1e-06
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Frame = +2
Query: 410 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR---SLR 580
L+ LMC +C + T ECLH FC CI+ L + NK CP C ++ R S+R
Sbjct: 12 LNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRPLLSIR 70
Query: 581 PDPNFDALISKIYPS---------RDEYEAHQERVLARINKHNNQQ----------ALSH 703
D ++ K+ P RD Y A+ L + +N+ ALS
Sbjct: 71 SDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYP---LTEVPNGSNEDRGEVLEQEKGALSD 127
Query: 704 SIEEGLKIQAMN--RLQRGKKQQIENGSGAED 793
L I+ R + KK +ENG G ++
Sbjct: 128 DEIVSLSIEFYEGVRDREEKKGPLENGDGDKE 159
>ref|NP_001096726.1| E3 ubiquitin-protein ligase RFWD2 [Bos taurus].
Length = 735
Score = 51.2 bits (121), Expect = 2e-06
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Frame = +2
Query: 332 LSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIIT 511
LS +R P + +GL + S ++ +CPIC DM++ TK C H FC CI
Sbjct: 110 LSSGSRKRPPLAPLCNGL--INSYEDKSNDFVCPICFDMIEEAYMTK-CGHSFCYKCIHQ 166
Query: 512 ALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQ- 688
+L N+ CP C + + L P+ + LI K +E + ++ N H Q
Sbjct: 167 SLEDNNR-CPKCNYVVDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQI 225
Query: 689 -QALSHSIEEGLKIQAMN---RLQRGKKQQIENGSGA 787
Q L + ++ L + +N L KK+Q+E S A
Sbjct: 226 FQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAESHA 262
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,534,711
Number of extensions: 828405
Number of successful extensions: 2671
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2622
Number of HSP's successfully gapped: 11
Length of query: 387
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,240,222
Effective search space: 4029982826
Effective search space used: 4029982826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013848
(1161 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357629.1| PREDICTED: e3 ubiquitin-protein ligase RING2... 586 e-168
Alignment gi|XP_003357628.1| PREDICTED: e3 ubiquitin-protein ligase RING2... 586 e-168
Alignment gi|XP_003130427.1| PREDICTED: e3 ubiquitin-protein ligase RING2... 586 e-168
Alignment gi|NP_001177164.1| E3 ubiquitin-protein ligase RING1 [Sus scrof... 328 3e-90
Alignment gi|XP_003358078.1| PREDICTED: breast cancer type 1 susceptibili... 58 9e-09
Alignment gi|XP_003358077.1| PREDICTED: breast cancer type 1 susceptibili... 58 9e-09
Alignment gi|XP_003127930.1| PREDICTED: e3 ubiquitin-protein ligase RNF13... 53 3e-07
Alignment gi|XP_003361952.1| PREDICTED: polycomb group RING finger protei... 51 1e-06
Alignment gi|NP_001116681.1| tripartite motif-containing protein 26 [Sus ... 50 2e-06
Alignment gi|NP_001193331.1| E3 ubiquitin-protein ligase TRIM31 [Sus scro... 49 4e-06
>ref|XP_003357629.1| PREDICTED: e3 ubiquitin-protein ligase RING2-like isoform 3 [Sus
scrofa].
Length = 338
Score = 586 bits (1511), Expect = e-168
Identities = 292/294 (99%), Positives = 292/294 (99%)
Frame = +2
Query: 278 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 457
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
Sbjct: 3 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 62
Query: 458 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 637
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
Sbjct: 63 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 122
Query: 638 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 817
EAHQERVLARINKHNNQQAL HSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS
Sbjct: 123 EAHQERVLARINKHNNQQALCHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 182
Query: 818 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 997
NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD
Sbjct: 183 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 242
Query: 998 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQMNLDTASEKQYTIY 1159
DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGE NQMNLDTASEKQYTIY
Sbjct: 243 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIY 296
>ref|XP_003357628.1| PREDICTED: e3 ubiquitin-protein ligase RING2-like isoform 2 [Sus
scrofa].
Length = 347
Score = 586 bits (1511), Expect = e-168
Identities = 292/294 (99%), Positives = 292/294 (99%)
Frame = +2
Query: 278 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 457
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
Sbjct: 12 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 71
Query: 458 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 637
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
Sbjct: 72 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 131
Query: 638 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 817
EAHQERVLARINKHNNQQAL HSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS
Sbjct: 132 EAHQERVLARINKHNNQQALCHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 191
Query: 818 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 997
NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD
Sbjct: 192 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 251
Query: 998 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQMNLDTASEKQYTIY 1159
DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGE NQMNLDTASEKQYTIY
Sbjct: 252 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIY 305
>ref|XP_003130427.1| PREDICTED: e3 ubiquitin-protein ligase RING2-like isoform 1 [Sus
scrofa].
Length = 336
Score = 586 bits (1511), Expect = e-168
Identities = 292/294 (99%), Positives = 292/294 (99%)
Frame = +2
Query: 278 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 457
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
Sbjct: 1 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 60
Query: 458 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 637
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
Sbjct: 61 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 120
Query: 638 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 817
EAHQERVLARINKHNNQQAL HSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS
Sbjct: 121 EAHQERVLARINKHNNQQALCHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 180
Query: 818 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 997
NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD
Sbjct: 181 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 240
Query: 998 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQMNLDTASEKQYTIY 1159
DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGE NQMNLDTASEKQYTIY
Sbjct: 241 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIY 294
>ref|NP_001177164.1| E3 ubiquitin-protein ligase RING1 [Sus scrofa].
Length = 406
Score = 328 bits (841), Expect = 3e-90
Identities = 181/300 (60%), Positives = 206/300 (68%), Gaps = 40/300 (13%)
Frame = +2
Query: 308 QPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHR 487
Q SKTWELSLYEL RTPQEAI DG EI VSPRSLHSELMCPICLDMLKNTMTTKECLHR
Sbjct: 8 QNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHR 67
Query: 488 FCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLAR 667
FC+DCI+TALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR+EYEAHQ+RVL R
Sbjct: 68 FCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIR 127
Query: 668 INKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQ--------IENGSG--AEDNGDSSHCS 817
+++ +NQQALS SIEEGL++QAM+R QR ++ + G G E GD S
Sbjct: 128 LSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMPGSDQTTTMSGGEGEPGEGEGDGEDVS 187
Query: 818 NASTHSNQEAGPSNKRTKT-----------------------SDDSGLELDNNNAAVAID 928
+ S + GP+ KR + S+DSG
Sbjct: 188 SDSA-PDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGP 246
Query: 929 PVMDGA-------SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALE 1087
P GA EIELVFRPHP L+EK + QTRY+KT+GNATVDHLSKYLA+R+ALE
Sbjct: 247 PSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALE 306
>ref|XP_003358078.1| PREDICTED: breast cancer type 1 susceptibility protein homolog
isoform 2 [Sus scrofa].
Length = 759
Score = 58.2 bits (139), Expect = 9e-09
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 11/176 (6%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITAL--RSGNKECPTCRKKLVSKRSLRPDPNF 595
L CPICL+++K ++TK C H FC C++ L + G +CP C K ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLC-KNDITKRSLQESTRF 79
Query: 596 DALISKIYPSRDEYEAHQERVLA---RINKHNNQQALSHSIEEGLKIQAMNRLQRGK--K 760
L+ ++ +E A +K + H EE IQ+M R K +
Sbjct: 80 SQLVEELLKIIHAFELDTGLQFANNYNFSKKTENNSPEHLKEEVSIIQSMGYRNRAKRLR 139
Query: 761 QQIENGSGAEDNGDSSHCSNAS----THSNQEAGPSNKRTKTSDDSGLELDNNNAA 916
Q ++ S+ SN + Q+ P NK S D N A
Sbjct: 140 QSDPEDPTLQETSLSAQLSNLGIVKPLRTQQQIQPQNKSVYIELGSDSSEDTVNKA 195
>ref|XP_003358077.1| PREDICTED: breast cancer type 1 susceptibility protein homolog
isoform 1 [Sus scrofa].
Length = 1865
Score = 58.2 bits (139), Expect = 9e-09
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 11/176 (6%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITAL--RSGNKECPTCRKKLVSKRSLRPDPNF 595
L CPICL+++K ++TK C H FC C++ L + G +CP C K ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLC-KNDITKRSLQESTRF 79
Query: 596 DALISKIYPSRDEYEAHQERVLA---RINKHNNQQALSHSIEEGLKIQAMNRLQRGK--K 760
L+ ++ +E A +K + H EE IQ+M R K +
Sbjct: 80 SQLVEELLKIIHAFELDTGLQFANNYNFSKKTENNSPEHLKEEVSIIQSMGYRNRAKRLR 139
Query: 761 QQIENGSGAEDNGDSSHCSNAS----THSNQEAGPSNKRTKTSDDSGLELDNNNAA 916
Q ++ S+ SN + Q+ P NK S D N A
Sbjct: 140 QSDPEDPTLQETSLSAQLSNLGIVKPLRTQQQIQPQNKSVYIELGSDSSEDTVNKA 195
>ref|XP_003127930.1| PREDICTED: e3 ubiquitin-protein ligase RNF138-like isoform 1 [Sus
scrofa].
Length = 245
Score = 53.1 bits (126), Expect = 3e-07
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 386 EIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 565
E+ + + CP+C ++LK + T C H FC C +TA+R CP CR +
Sbjct: 4 ELSAATSYTEDDFYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGNVTR 63
Query: 566 KRSLRPDPNFD 598
+ P+ D
Sbjct: 64 RERACPERALD 74
>ref|XP_003361952.1| PREDICTED: polycomb group RING finger protein 1-like [Sus scrofa].
Length = 262
Score = 51.2 bits (121), Expect = 1e-06
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Frame = +2
Query: 386 EIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 565
E+ V + L+ ++C +C + T ECLH FC CI+ L++ +K CP C K+
Sbjct: 68 EVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQT-SKYCPMCNIKIHE 126
Query: 566 KR---SLRPDPNFDALISKIYPSRDEYEA------HQERVLARINKHNNQQ-ALSH 703
+ +L+ D ++ K+ P + E +Q R L RI + + ++ ALS+
Sbjct: 127 TQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSRGLDRITQPSGEEPALSN 182
>ref|NP_001116681.1| tripartite motif-containing protein 26 [Sus scrofa].
Length = 545
Score = 50.1 bits (118), Expect = 2e-06
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Frame = +2
Query: 404 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCI--ITALRSGNKECPTCRKKLVSKRSL 577
RSL E+ C ICLD L++ +T +C H FC C I + G CP C KK +K ++
Sbjct: 8 RSLEEEVTCSICLDYLRDPVTI-DCGHVFCRSCTTDIHPVSGGRPVCPLC-KKPFTKENI 65
Query: 578 RPDPNFDALIS-----KIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNR 742
RP +L+ K+ R E +E+ R+ + + ++ + ++G + M R
Sbjct: 66 RPVWQLASLVENIERLKVDTGRQPGEVAREQQDTRLCERHQEKLHYYCEDDGKLLCVMCR 125
Query: 743 LQR 751
R
Sbjct: 126 ESR 128
>ref|NP_001193331.1| E3 ubiquitin-protein ligase TRIM31 [Sus scrofa].
Length = 576
Score = 49.3 bits (116), Expect = 4e-06
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Frame = +2
Query: 410 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK--ECPTCRKKLVSKRSLRP 583
L E++CPIC+D+L++ T +C H FC CI+ + + +CP C K+V + ++RP
Sbjct: 10 LQEEVICPICMDILQDPATI-DCGHSFCLQCIMRSREGLDSVIKCPLC-NKIVKRDTIRP 67
Query: 584 DPNFDALISKIY---PSRDEYEAHQ 649
+ L+ KI PS ++ E +
Sbjct: 68 NWLLVNLVEKIQAMDPSEEQPEVKE 92
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,966,767
Number of extensions: 553144
Number of successful extensions: 1707
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1672
Number of HSP's successfully gapped: 15
Length of query: 387
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 286
Effective length of database: 8,829,335
Effective search space: 2525189810
Effective search space used: 2525189810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013848
(1161 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035407.1| E3 ubiquitin-protein ligase RING2 [Mus musculus]. 588 e-168
Alignment gi|NP_033092.3| E3 ubiquitin-protein ligase RING1 [Mus musculus]. 328 5e-90
Alignment gi|NP_766304.2| polycomb group RING finger protein 3 [Mus muscu... 58 1e-08
Alignment gi|NP_033894.3| breast cancer type 1 susceptibility protein hom... 54 2e-07
Alignment gi|NP_666189.1| E3 ubiquitin-protein ligase TRIM31 [Mus musculu... 54 2e-07
Alignment gi|NP_997506.1| E3 ubiquitin-protein ligase RNF138 isoform 1 [M... 53 4e-07
Alignment gi|NP_062680.2| E3 ubiquitin-protein ligase RNF138 isoform 2 [M... 53 4e-07
Alignment gi|NP_932109.1| polycomb group RING finger protein 1 [Mus muscu... 51 2e-06
Alignment gi|XP_142049.3| PREDICTED: polycomb group RING finger protein 6... 50 3e-06
Alignment gi|XP_913741.1| PREDICTED: polycomb group RING finger protein 6... 50 3e-06
>ref|NP_035407.1| E3 ubiquitin-protein ligase RING2 [Mus musculus].
Length = 336
Score = 588 bits (1516), Expect = e-168
Identities = 293/294 (99%), Positives = 293/294 (99%)
Frame = +2
Query: 278 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 457
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
Sbjct: 1 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 60
Query: 458 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 637
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
Sbjct: 61 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 120
Query: 638 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 817
EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS
Sbjct: 121 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 180
Query: 818 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 997
NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD
Sbjct: 181 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 240
Query: 998 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQMNLDTASEKQYTIY 1159
DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGE NQMNLDTASEKQYTIY
Sbjct: 241 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIY 294
>ref|NP_033092.3| E3 ubiquitin-protein ligase RING1 [Mus musculus].
Length = 406
Score = 328 bits (841), Expect = 5e-90
Identities = 181/300 (60%), Positives = 206/300 (68%), Gaps = 40/300 (13%)
Frame = +2
Query: 308 QPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHR 487
Q SKTWELSLYEL RTPQEAI DG EI VSPRSLHSELMCPICLDMLKNTMTTKECLHR
Sbjct: 8 QNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHR 67
Query: 488 FCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLAR 667
FC+DCI+TALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR+EYEAHQ+RVL R
Sbjct: 68 FCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIR 127
Query: 668 INKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQ--------IENGSG--AEDNGDSSHCS 817
+++ +NQQALS SIEEGL++QAM+R QR ++ + G G E GD S
Sbjct: 128 LSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMPGSDQTATMSGGEGEPGEGEGDGEDVS 187
Query: 818 NASTHSNQEAGPSNKRTK-----------------------TSDDSGLELDNNNAAVAID 928
+ S + GP+ KR + S+DSG
Sbjct: 188 SDSA-PDSAPGPAPKRPRGAGAGASSVGTGGGAAGGACGGAGSEDSGDRGGTLGGGTLGP 246
Query: 929 PVMDGA-------SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALE 1087
P GA EIELVFRPHP L+EK + QTRY+KT+GNATVDHLSKYLA+R+ALE
Sbjct: 247 PSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALE 306
>ref|NP_766304.2| polycomb group RING finger protein 3 [Mus musculus].
Length = 241
Score = 58.2 bits (139), Expect = 1e-08
Identities = 53/239 (22%), Positives = 90/239 (37%)
Frame = +2
Query: 410 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDP 589
+++ + C +C L + T ECLH FC C++ L N CPTCR +
Sbjct: 11 INAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEE-NNTCPTCRIVI---------- 59
Query: 590 NFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQI 769
HQ L I Q + + + GL+ M K+++
Sbjct: 60 ------------------HQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMR-----KQREF 96
Query: 770 ENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGAS 949
+ G E GD + + Q P N TK D+S E D
Sbjct: 97 YHKLGMEVPGD---IKGEACSAKQHLDPRNGETKADDNSNKETAEEKQEEDND-YHRSDE 152
Query: 950 EIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQMNL 1126
++ + + + + + ++I+ S ATV HL K++A +L L FN++++
Sbjct: 153 QVSICLECNSSKLR---GLKRKWIRCSAQATVLHLKKFIAKKLNL------SSFNELDI 202
>ref|NP_033894.3| breast cancer type 1 susceptibility protein homolog [Mus musculus].
Length = 1812
Score = 53.9 bits (128), Expect = 2e-07
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITAL--RSGNKECPTCRKKLVSKRSLRPDPNF 595
L CPICL+++K ++TK C H FC C++ L + G +CP C+ + ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNE-ITKRSLQGSTRF 79
Query: 596 DALISKIYPSRDEYEAHQERVLAR----INKHNNQQALSHSIEEGLKIQAMNRLQRGKK- 760
L ++ +E L K NN + EE IQ++ R ++
Sbjct: 80 SQLAEELLRIMAAFELDTGMQLTNGFSFSKKRNN--SCERLNEEASIIQSVGYRNRVRRL 137
Query: 761 QQIENGSGAEDNGDSSHCSN----ASTHSNQEAGPSNKRTKTSDDS 886
Q+E G+ + SN S N++ P K DS
Sbjct: 138 PQVEPGNATLKDSLGVQLSNLGIVRSVKKNRQTQPRKKSVYIELDS 183
>ref|NP_666189.1| E3 ubiquitin-protein ligase TRIM31 [Mus musculus].
Length = 507
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +2
Query: 410 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNK-ECPTCRKKLVSKRSLRPD 586
L E+ CPIC+++L++ +T +C H FC CI ++ K +CP C K V+K + RP+
Sbjct: 10 LQEEVTCPICMEILQDPVTI-DCGHNFCLQCISQVGKTSEKIQCPLC-KLSVNKNTFRPN 67
Query: 587 PNFDALISKIYPSRDEYEAHQERVLARINKHNNQ 688
+L KI S D + E+ +R +H +
Sbjct: 68 KLLASLAEKI-QSMDPADIQAEKEDSRCQRHKEK 100
>ref|NP_997506.1| E3 ubiquitin-protein ligase RNF138 isoform 1 [Mus musculus].
Length = 245
Score = 53.1 bits (126), Expect = 4e-07
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 386 EIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 565
E+ + + CP+C ++LK + T C H FC C +TA+R CP CR +
Sbjct: 4 ELSAATSYTEDDFYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGSVTR 63
Query: 566 KRSLRPDPNFD 598
+ P+ D
Sbjct: 64 RERACPERALD 74
>ref|NP_062680.2| E3 ubiquitin-protein ligase RNF138 isoform 2 [Mus musculus].
Length = 209
Score = 53.1 bits (126), Expect = 4e-07
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 386 EIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 565
E+ + + CP+C ++LK + T C H FC C +TA+R CP CR +
Sbjct: 4 ELSAATSYTEDDFYCPVCQEVLKTPVRTAACQHVFCRKCFLTAMRESGIHCPLCRGSVTR 63
Query: 566 KRSLRPDPNFD 598
+ P+ D
Sbjct: 64 RERACPERALD 74
>ref|NP_932109.1| polycomb group RING finger protein 1 [Mus musculus].
Length = 247
Score = 51.2 bits (121), Expect = 2e-06
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Frame = +2
Query: 386 EIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 565
E+ V + L+ ++C +C + T ECLH FC CI+ L++ +K CP C K+
Sbjct: 21 EVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQT-SKYCPMCNIKIHE 79
Query: 566 KR---SLRPDPNFDALISKIYPSRDEYEA------HQERVLARINKHNNQQ-ALSH 703
+ +L+ D ++ K+ P + E +Q R L R+++ + ++ ALS+
Sbjct: 80 TQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSRGLDRVSQPSGEEPALSN 135
>ref|XP_142049.3| PREDICTED: polycomb group RING finger protein 6-like [Mus
musculus].
Length = 230
Score = 50.4 bits (119), Expect = 3e-06
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCR---KKLVSKRSLRPDPN 592
+ C IC L + T ECLH FC CI+ N+ CP C + ++LR DP
Sbjct: 119 ISCFICKGYLIDAATITECLHTFCKSCIVKHFEHSNR-CPKCNIIVHQAKPHKNLRMDPQ 177
Query: 593 FDALISKIYPSRDEYEAHQER 655
+++ K+ +E E Q R
Sbjct: 178 LQSIVYKLVAGLEENEKKQRR 198
>ref|XP_913741.1| PREDICTED: polycomb group RING finger protein 6-like [Mus
musculus].
Length = 230
Score = 50.4 bits (119), Expect = 3e-06
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCR---KKLVSKRSLRPDPN 592
+ C IC L + T ECLH FC CI+ N+ CP C + ++LR DP
Sbjct: 119 ISCFICKGYLIDAATITECLHTFCKSCIVKHFEHSNR-CPKCNIIVHQAKPHKNLRMDPQ 177
Query: 593 FDALISKIYPSRDEYEAHQER 655
+++ K+ +E E Q R
Sbjct: 178 LQSIVYKLVAGLEENEKKQRR 198
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,247,011
Number of extensions: 719546
Number of successful extensions: 2523
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 2470
Number of HSP's successfully gapped: 21
Length of query: 387
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 284
Effective length of database: 12,523,851
Effective search space: 3556773684
Effective search space used: 3556773684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013848
(1161 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009143.1| E3 ubiquitin-protein ligase RING2 [Homo sapiens]. 587 e-168
Alignment gi|NP_002922.2| E3 ubiquitin-protein ligase RING1 [Homo sapiens]. 328 8e-90
Alignment gi|NP_006306.2| polycomb group RING finger protein 3 [Homo sapi... 57 4e-08
Alignment gi|NP_001178253.1| E3 ubiquitin-protein ligase RNF138 isoform 3... 55 1e-07
Alignment gi|NP_009230.2| breast cancer type 1 susceptibility protein iso... 54 4e-07
Alignment gi|NP_009229.2| breast cancer type 1 susceptibility protein iso... 54 4e-07
Alignment gi|NP_057355.2| E3 ubiquitin-protein ligase RNF138 isoform 1 [H... 54 4e-07
Alignment gi|NP_009231.2| breast cancer type 1 susceptibility protein iso... 54 4e-07
Alignment gi|NP_009225.1| breast cancer type 1 susceptibility protein iso... 54 4e-07
Alignment gi|NP_009075.1| polycomb group RING finger protein 2 [Homo sapi... 51 2e-06
>ref|NP_009143.1| E3 ubiquitin-protein ligase RING2 [Homo sapiens].
Length = 336
Score = 587 bits (1513), Expect = e-168
Identities = 292/294 (99%), Positives = 293/294 (99%)
Frame = +2
Query: 278 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 457
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
Sbjct: 1 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN 60
Query: 458 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 637
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
Sbjct: 61 TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY 120
Query: 638 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 817
EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS
Sbjct: 121 EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS 180
Query: 818 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMDGASEIELVFRPHPTLMEKD 997
NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAA+AIDPVMDGASEIELVFRPHPTLMEKD
Sbjct: 181 NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAMAIDPVMDGASEIELVFRPHPTLMEKD 240
Query: 998 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQMNLDTASEKQYTIY 1159
DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGE NQMNLDTASEKQYTIY
Sbjct: 241 DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIY 294
>ref|NP_002922.2| E3 ubiquitin-protein ligase RING1 [Homo sapiens].
Length = 406
Score = 328 bits (840), Expect = 8e-90
Identities = 181/300 (60%), Positives = 206/300 (68%), Gaps = 40/300 (13%)
Frame = +2
Query: 308 QPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHR 487
Q SKTWELSLYEL RTPQEAI DG EI VSPRSLHSELMCPICLDMLKNTMTTKECLHR
Sbjct: 8 QNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHR 67
Query: 488 FCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLAR 667
FC+DCI+TALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR+EYEAHQ+RVL R
Sbjct: 68 FCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIR 127
Query: 668 INKHNNQQALSHSIEEGLKIQAMNRLQRGKKQ--------QIENGSG--AEDNGDSSHCS 817
+++ +NQQALS SIEEGL++QAM+R QR ++ + G G E GD S
Sbjct: 128 LSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVS 187
Query: 818 NASTHSNQEAGPSNKRTKT-----------------------SDDSGLELDNNNAAVAID 928
+ S + GP+ KR + S+DSG
Sbjct: 188 SDSA-PDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGP 246
Query: 929 PVMDGA-------SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALE 1087
P GA EIELVFRPHP L+EK + QTRY+KT+GNATVDHLSKYLA+R+ALE
Sbjct: 247 PSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALE 306
>ref|NP_006306.2| polycomb group RING finger protein 3 [Homo sapiens].
Length = 242
Score = 56.6 bits (135), Expect = 4e-08
Identities = 52/242 (21%), Positives = 93/242 (38%), Gaps = 3/242 (1%)
Frame = +2
Query: 410 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR--- 580
+++ + C +C L + T ECLH FC C++ L N CPTCR + L+
Sbjct: 11 INAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEE-NNTCPTCRIVIHQSHPLQYIG 69
Query: 581 PDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKK 760
D ++ K+ P E E ++R L + +K + + K
Sbjct: 70 HDRTMQDIVYKLVPGLQEAEMRKQREF--------YHKLGMEVPGDIKGETCS-----AK 116
Query: 761 QQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAVAIDPVMD 940
Q +++ E D S SN+EA K +D+ + ++ ++
Sbjct: 117 QHLDSHRNGETKADDS--------SNKEAA----EEKPEEDNDYHRSDEQVSICLE---- 160
Query: 941 GASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGEFNQM 1120
K + ++I+ S ATV HL K++A +L L FN++
Sbjct: 161 -------------CNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNL------SSFNEL 201
Query: 1121 NL 1126
++
Sbjct: 202 DI 203
>ref|NP_001178253.1| E3 ubiquitin-protein ligase RNF138 isoform 3 [Homo sapiens].
Length = 282
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +2
Query: 356 TPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE 535
+P A+ + L S + CP+C ++LK + T C H FC C +TA+R
Sbjct: 33 SPSPAMAEDLSAATS--YTEDDFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAH 90
Query: 536 CPTCRKKLVSKRSLRPDPNFD 598
CP CR + + P+ D
Sbjct: 91 CPLCRGNVTRRERACPERALD 111
>ref|NP_009230.2| breast cancer type 1 susceptibility protein isoform 5 [Homo
sapiens].
Length = 699
Score = 53.5 bits (127), Expect = 4e-07
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITAL--RSGNKECPTCRKKLVSKRSLRPDPNF 595
L CPICL+++K ++TK C H FC C++ L + G +CP C K ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLC-KNDITKRSLQESTRF 79
Query: 596 DALISKIYPSRDEYEAHQERVLARINKHN----NQQALSHSIEEGLKIQAM---NRLQRG 754
L+ ++ ++ + L N +N + H +E IQ+M NR +R
Sbjct: 80 SQLVEELLKIICAFQL--DTGLEYANSYNFAKKENNSPEHLKDEVSIIQSMGYRNRAKRL 137
Query: 755 KKQQIENGSGAEDNGDSSHCSNAST 829
+ + EN S ++ S SN T
Sbjct: 138 LQSEPENPS-LQETSLSVQLSNLGT 161
>ref|NP_009229.2| breast cancer type 1 susceptibility protein isoform 4 [Homo
sapiens].
Length = 759
Score = 53.5 bits (127), Expect = 4e-07
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITAL--RSGNKECPTCRKKLVSKRSLRPDPNF 595
L CPICL+++K ++TK C H FC C++ L + G +CP C K ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLC-KNDITKRSLQESTRF 79
Query: 596 DALISKIYPSRDEYEAHQERVLARINKHN----NQQALSHSIEEGLKIQAM---NRLQRG 754
L+ ++ ++ + L N +N + H +E IQ+M NR +R
Sbjct: 80 SQLVEELLKIICAFQL--DTGLEYANSYNFAKKENNSPEHLKDEVSIIQSMGYRNRAKRL 137
Query: 755 KKQQIENGSGAEDNGDSSHCSNAST 829
+ + EN S ++ S SN T
Sbjct: 138 LQSEPENPS-LQETSLSVQLSNLGT 161
>ref|NP_057355.2| E3 ubiquitin-protein ligase RNF138 isoform 1 [Homo sapiens].
Length = 245
Score = 53.5 bits (127), Expect = 4e-07
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 419 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFD 598
+ CP+C ++LK + T C H FC C +TA+R CP CR + + P+ D
Sbjct: 15 DFYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERALD 74
>ref|NP_009231.2| breast cancer type 1 susceptibility protein isoform 2 [Homo
sapiens].
Length = 1884
Score = 53.5 bits (127), Expect = 4e-07
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITAL--RSGNKECPTCRKKLVSKRSLRPDPNF 595
L CPICL+++K ++TK C H FC C++ L + G +CP C K ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLC-KNDITKRSLQESTRF 79
Query: 596 DALISKIYPSRDEYEAHQERVLARINKHN----NQQALSHSIEEGLKIQAM---NRLQRG 754
L+ ++ ++ + L N +N + H +E IQ+M NR +R
Sbjct: 80 SQLVEELLKIICAFQL--DTGLEYANSYNFAKKENNSPEHLKDEVSIIQSMGYRNRAKRL 137
Query: 755 KKQQIENGSGAEDNGDSSHCSNAST 829
+ + EN S ++ S SN T
Sbjct: 138 LQSEPENPS-LQETSLSVQLSNLGT 161
>ref|NP_009225.1| breast cancer type 1 susceptibility protein isoform 1 [Homo
sapiens].
Length = 1863
Score = 53.5 bits (127), Expect = 4e-07
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Frame = +2
Query: 422 LMCPICLDMLKNTMTTKECLHRFCADCIITAL--RSGNKECPTCRKKLVSKRSLRPDPNF 595
L CPICL+++K ++TK C H FC C++ L + G +CP C K ++KRSL+ F
Sbjct: 22 LECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLC-KNDITKRSLQESTRF 79
Query: 596 DALISKIYPSRDEYEAHQERVLARINKHN----NQQALSHSIEEGLKIQAM---NRLQRG 754
L+ ++ ++ + L N +N + H +E IQ+M NR +R
Sbjct: 80 SQLVEELLKIICAFQL--DTGLEYANSYNFAKKENNSPEHLKDEVSIIQSMGYRNRAKRL 137
Query: 755 KKQQIENGSGAEDNGDSSHCSNAST 829
+ + EN S ++ S SN T
Sbjct: 138 LQSEPENPS-LQETSLSVQLSNLGT 161
>ref|NP_009075.1| polycomb group RING finger protein 2 [Homo sapiens].
Length = 344
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Frame = +2
Query: 410 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR---SLR 580
L+ LMC +C + T ECLH FC CI+ L + NK CP C ++ R S+R
Sbjct: 12 LNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRPLLSIR 70
Query: 581 PDPNFDALISKIYPS---------RDEYEAHQERVLARINKHNNQQ----------ALSH 703
D ++ K+ P RD Y A+ L + +N+ ALS
Sbjct: 71 SDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYP---LTEVPNGSNEDRGEVLEQEKGALSD 127
Query: 704 SIEEGLKIQAMN--RLQRGKKQQIENGSGAED 793
L I+ R + KK +ENG G ++
Sbjct: 128 DEIVSLSIEFYEGARDRDEKKGPLENGDGDKE 159
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,408,245
Number of extensions: 830336
Number of successful extensions: 2923
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2862
Number of HSP's successfully gapped: 13
Length of query: 387
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,868,908
Effective search space: 4207900964
Effective search space used: 4207900964
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013848
(1161 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 904 0.0
Sscrofa_Chr09 545 e-152
>Sscrofa_Chr01
|| Length = 315321322
Score = 904 bits (456), Expect = 0.0
Identities = 790/892 (88%), Gaps = 12/892 (1%)
Strand = Plus / Plus
Query: 259 ggctggggcgggagccgcaatgtctcaggctgtgcagacaaatggaactcaaccattaag 318
||||||||| || ||| |||||||||| |||| ||||||||||| |||||||||||||||
Sbjct: 198227713 ggctggggcaggcgccacaatgtctcaagctgggcagacaaatgaaactcaaccattaag 198227772
Query: 319 caaaacatgggaactcagtttatatgaattacaacgaacacctcaggaggcaataaccga 378
|||| || |||||||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct: 198227773 caaa-caggggaactcagtttatatgaattacaatgaacacccaaggaggcaataat-ga 198227830
Query: 379 tggcttggaaattgtggtttcacctcgaagtctacacagtgaactaatgtgcccgatttg 438
||||| |||||||||||||||||||| |||||||||||||||| |||| ||||| |||||
Sbjct: 198227831 tggctaggaaattgtggtttcacctcaaagtctacacagtgaattaatatgcccaatttg 198227890
Query: 439 tttggacatgttgaagaataccatgactacaaaggagtgtttacatcgtttttgtgcaga 498
|||||| |||||||||||| |||||||||||||||||||| | | |||||||||| |
Sbjct: 198227891 tttggatatgttgaagaatgccatgactacaaaggagtgtcaa--ttgtttttgtgctca 198227948
Query: 499 ctgcattatcacagccctcagaagtggcaataaagaatgccctacctgtcggaaaaagct 558
||||||||||||||| |||||| |||||| | ||||| ||||||||||| ||||||||||
Sbjct: 198227949 ctgcattatcacagctctcagaggtggcagttaagaacgccctacctgttggaaaaagct 198228008
Query: 559 agtttccaaaagatcactaagaccagacccaaactttgatgcactca---tcagcaaaat 615
||||||||||||||| |||||||||||| |||||| || |||||| | |||| |||||
Sbjct: 198228009 agtttccaaaagatcgctaagaccagacacaaactgtggtgcactaaaaatcagtaaaat 198228068
Query: 616 ttatccaagtcgtgatgagtatgaagctcatcaagaaagagtgttagcgaggatcaacaa 675
|||||||||| ||||||||||||| ||||||||||||| ||| |||| |||||||||||
Sbjct: 198228069 ttatccaagttgtgatgagtatgaggctcatcaagaaaaagtattagtgaggatcaacat 198228128
Query: 676 gcacaataatcagcaagcactcagtcacagcattgaggaaggactgaagatacaggccat 735
||||||| ||||||||||| | ||||| |||||| |||||||||||||||||||||||||
Sbjct: 198228129 gcacaattatcagcaagcattgagtcatagcatttaggaaggactgaagatacaggccat 198228188
Query: 736 gaacagatta-cagcgaggc-aagaaacagcagattgaaaatggtagtggagcagaagat 793
|||||| | ||| | ||| || ||| ||||||||||||||||||||||| |||||||
Sbjct: 198228189 gaacaggccatcagtgtggcaaaaaaatagcagattgaaaatggtagtggaatagaagat 198228248
Query: 794 aatggtgacagttctcactgtagtaatgcatccacgcatagcaatcaggaagcaggacct 853
||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct: 198228249 aatggcgacagttctcactgtagtaatgcatccatacgtagtaatcaggaagcaggacct 198228308
Query: 854 agcaacaaacggaccaaaacatctgatgattctgggcttgagcttgataataacaatgca 913
|| |||||| | ||||||||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct: 198228309 agtaacaaatgaaccaaaacacctgatgattctggacttgagcttgataataacaataca 198228368
Query: 914 gcagtggcaattgatccagtcatggatggtgctagtgaaattgagttagtattcaggcct 973
|||||| |||||||||||| |||||| |||||||| ||||| |||||||||| |||
Sbjct: 198228369 acagtggtaattgatccagtaatggattgtgctagt--tattgaattagtattcacacct 198228426
Query: 974 catcccacacttatggagaaagatgacagtgcacagacaagatacataaagacttcaggt 1033
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 198228427 catcttacacttatggaaaaagatgacagtgcacagacaagatacataaagacttccggt 198228486
Query: 1034 aatgccactgttgatcatttatccaagtatctggctgtgaggttagctttagaagaactt 1093
|||| |||||||||| |||||||| ||| ||||||||| |||||||||||||||||||
Sbjct: 198228487 aatg-ttctgttgatcacttatccaaatatttggctgtgaagttagctttagaagaactt 198228545
Query: 1094 cggagcaaaggagaattcaaccagatgaatcttgatacagccagtgagaagc 1145
| |||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 198228546 tgatgcaaaggagaatcaaaccaaatgaatcttgatacagccagtgagaagc 198228597
>Sscrofa_Chr09
|| Length = 153670197
Score = 545 bits (275), Expect = e-152
Identities = 275/275 (100%)
Strand = Plus / Plus
Query: 740 agattacagcgaggcaagaaacagcagattgaaaatggtagtggagcagaagataatggt 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138726755 agattacagcgaggcaagaaacagcagattgaaaatggtagtggagcagaagataatggt 138726814
Query: 800 gacagttctcactgtagtaatgcatccacgcatagcaatcaggaagcaggacctagcaac 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138726815 gacagttctcactgtagtaatgcatccacgcatagcaatcaggaagcaggacctagcaac 138726874
Query: 860 aaacggaccaaaacatctgatgattctgggcttgagcttgataataacaatgcagcagtg 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138726875 aaacggaccaaaacatctgatgattctgggcttgagcttgataataacaatgcagcagtg 138726934
Query: 920 gcaattgatccagtcatggatggtgctagtgaaattgagttagtattcaggcctcatccc 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138726935 gcaattgatccagtcatggatggtgctagtgaaattgagttagtattcaggcctcatccc 138726994
Query: 980 acacttatggagaaagatgacagtgcacagacaag 1014
|||||||||||||||||||||||||||||||||||
Sbjct: 138726995 acacttatggagaaagatgacagtgcacagacaag 138727029
Score = 406 bits (205), Expect = e-110
Identities = 214/217 (98%)
Strand = Plus / Plus
Query: 525 gcaataaagaatgccctacctgtcggaaaaagctagtttccaaaagatcactaagaccag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138721212 gcaataaagaatgccctacctgtcggaaaaagctagtttccaaaagatcactaagaccag 138721271
Query: 585 acccaaactttgatgcactcatcagcaaaatttatccaagtcgtgatgagtatgaagctc 644
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 138721272 acccaaactttgatgcactcatcagcaaaatttatccgagtcgtgatgagtatgaagctc 138721331
Query: 645 atcaagaaagagtgttagcgaggatcaacaagcacaataatcagcaagcactcagtcaca 704
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 138721332 atcaagaaagagtattagcgaggatcaacaagcacaataatcagcaagcactctgtcaca 138721391
Query: 705 gcattgaggaaggactgaagatacaggccatgaacag 741
|||||||||||||||||||||||||||||||||||||
Sbjct: 138721392 gcattgaggaaggactgaagatacaggccatgaacag 138721428
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 362 caggaggcaataaccgatggcttggaaattgtggtttcacctcgaagtctacacagtgaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138719816 caggaggcaataaccgatggcttggaaattgtggtttcacctcgaagtctacacagtgaa 138719875
Query: 422 ctaatgtgcccgatttgtttggacatgttgaagaataccatgactacaaaggagtgttta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138719876 ctaatgtgcccgatttgtttggacatgttgaagaataccatgactacaaaggagtgttta 138719935
Query: 482 catcgtttttgtgcagactgcattatcacagccctcagaagtgg 525
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138719936 catcgtttttgtgcagactgcattatcacagccctcagaagtgg 138719979
Score = 280 bits (141), Expect = 2e-72
Identities = 147/149 (98%)
Strand = Plus / Plus
Query: 1013 agatacataaagacttcaggtaatgccactgttgatcatttatccaagtatctggctgtg 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138728094 agatacataaagacttcaggtaatgccactgttgatcatttatccaagtatctggctgtg 138728153
Query: 1073 aggttagctttagaagaacttcggagcaaaggagaattcaaccagatgaatcttgataca 1132
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 138728154 aggttagctttagaagaacttcggagcaaaggagaatcaaaccagatgaatcttgataca 138728213
Query: 1133 gccagtgagaagcagtataccatttacat 1161
|||||||||||||||||||||||||||||
Sbjct: 138728214 gccagtgagaagcagtataccatttacat 138728242
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 96 gcaaagccggcttcccctcggtctctcatgaatattgagcggcccctgttgtatttcccg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138670569 gcaaagccggcttcccctcggtctctcatgaatattgagcggcccctgttgtatttcccg 138670628
Query: 156 agctccattgcggaagccgaggctcgccatattgt 190
|||||||||||||||||||||||||||||||||||
Sbjct: 138670629 agctccattgcggaagccgaggctcgccatattgt 138670663
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 275 gcaatgtctcaggctgtgcagacaaatggaactcaaccattaagcaaaacatgggaactc 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138716541 gcaatgtctcaggctgtgcagacaaatggaactcaaccattaagcaaaacatgggaactc 138716600
Query: 335 agtttatatgaattacaacgaacacctcagg 365
|||||||||||||||||||||||||||||||
Sbjct: 138716601 agtttatatgaattacaacgaacacctcagg 138716631
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 217 ttcttcccgtgtctcactccggccgcggccagcggagccccgggctggggcgggagccg 275
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138670690 ttcttcccgtgtctcactccggccgcggccagcggagccccgggctggggcgggagccg 138670748
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,940,342
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 9
Length of query: 1161
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1140
Effective length of database: 2,808,413,156
Effective search space: 3201590997840
Effective search space used: 3201590997840
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)