Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013860
(983 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001180091.1| SH2 domain-containing protein 1B [Bos taurus]. 245 4e-65
Alignment gi|NP_001029905.1| SH2 domain-containing protein 1A [Bos taurus]. 102 5e-22
Alignment gi|NP_001178105.1| inositol polyphosphate phosphatase-like 1 [B... 94 2e-19
Alignment gi|XP_002693481.1| PREDICTED: phosphatidylinositol-3,4,5-trisph... 94 2e-19
Alignment gi|NP_001095352.1| phosphatidylinositol-3,4,5-trisphosphate 5-p... 84 2e-16
Alignment gi|NP_001193789.1| tyrosine-protein kinase ABL1 [Bos taurus]. 52 8e-07
Alignment gi|NP_001070359.1| dual adapter for phosphotyrosine and 3-phosp... 51 2e-06
Alignment gi|XP_002690130.1| PREDICTED: tyrosine-protein kinase FRK-like ... 50 2e-06
Alignment gi|XP_586141.3| PREDICTED: tyrosine-protein kinase FRK-like iso... 50 2e-06
Alignment gi|NP_001029506.1| lymphocyte-specific protein tyrosine kinase ... 49 7e-06
>ref|NP_001180091.1| SH2 domain-containing protein 1B [Bos taurus].
Length = 133
Score = 245 bits (626), Expect = 4e-65
Identities = 114/133 (85%), Positives = 123/133 (92%)
Frame = +2
Query: 167 MDLPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKH 346
MDLPYYHGPLSKRDCETLLLK G DGNYLLRDSESM GVLCLCVSFKNFVYTYRIFKEKH
Sbjct: 1 MDLPYYHGPLSKRDCETLLLKEGVDGNYLLRDSESMPGVLCLCVSFKNFVYTYRIFKEKH 60
Query: 347 GYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTSPCLRWRRSKIDLDGV 526
GY+ IQT EG +RQIFPNLKELISKFE+P+QGL+ HL+KP+KRT CLRWRRSKI+LDG+
Sbjct: 61 GYFHIQTAEGIRRQIFPNLKELISKFEEPHQGLMFHLVKPIKRTGSCLRWRRSKIELDGI 120
Query: 527 YENSNSDYVDVLP 565
YENS SDYVDVLP
Sbjct: 121 YENSGSDYVDVLP 133
>ref|NP_001029905.1| SH2 domain-containing protein 1A [Bos taurus].
Length = 128
Score = 102 bits (254), Expect = 5e-22
Identities = 46/98 (46%), Positives = 69/98 (70%)
Frame = +2
Query: 182 YHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTI 361
YHG +S+ E LLL G DG+YLLRDSES+ GV CLCV ++ ++YTYR+ + + G ++
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYQGYIYTYRVSQTETGSWSA 66
Query: 362 QTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKR 475
+T G ++ F +K LIS F+KP+QG+V+ L PV++
Sbjct: 67 ETAPGVHKRFFRKIKNLISAFQKPDQGIVIPLQYPVEK 104
>ref|NP_001178105.1| inositol polyphosphate phosphatase-like 1 [Bos taurus].
Length = 1264
Score = 93.6 bits (231), Expect = 2e-19
Identities = 46/99 (46%), Positives = 64/99 (64%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YH LS+ E LL + G DG++L+RDSES+AG LCV ++ V+TYRI + +
Sbjct: 26 WYHRDLSRAAAEELLARAGRDGSFLVRDSESVAGAFALCVLYQKHVHTYRILPDGEDFLA 85
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKR 475
+QT +G + F L ELIS + +PNQGLV LL PV+R
Sbjct: 86 VQTSQGVPVRRFQTLGELISLYAQPNQGLVCALLLPVER 124
>ref|XP_002693481.1| PREDICTED: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase
2-like [Bos taurus].
Length = 1264
Score = 93.6 bits (231), Expect = 2e-19
Identities = 46/99 (46%), Positives = 64/99 (64%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YH LS+ E LL + G DG++L+RDSES+AG LCV ++ V+TYRI + +
Sbjct: 26 WYHRDLSRAAAEELLARAGRDGSFLVRDSESVAGAFALCVLYQKHVHTYRILPDGEDFLA 85
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKR 475
+QT +G + F L ELIS + +PNQGLV LL PV+R
Sbjct: 86 VQTSQGVPVRRFQTLGELISLYAQPNQGLVCALLLPVER 124
>ref|NP_001095352.1| phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 [Bos
taurus].
Length = 1194
Score = 84.0 bits (206), Expect = 2e-16
Identities = 40/95 (42%), Positives = 59/95 (62%)
Frame = +2
Query: 185 HGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTIQ 364
HG +++ E LL + G+DG++L+R SES++ LCV ++N VYTYRI + +T+Q
Sbjct: 7 HGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQ 66
Query: 365 TVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV 469
EG + F L +LI ++K N GLV HL PV
Sbjct: 67 ASEGVPMRFFTKLDQLIEFYKKENMGLVTHLQYPV 101
>ref|NP_001193789.1| tyrosine-protein kinase ABL1 [Bos taurus].
Length = 1151
Score = 52.0 bits (123), Expect = 8e-07
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YHGP+S+ E LL G +G++L+R+SES G + + ++ VY YRI G
Sbjct: 146 WYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLY 204
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV-KRTSPCL--------RWRRSKI 511
+ + F L EL+ GL+ L P KR P + +W +
Sbjct: 205 V-----SSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWEMERT 259
Query: 512 DLDGVYENSNSDYVDVLP*R*GDWTKH 592
D+ ++ Y +V G W K+
Sbjct: 260 DITMKHKLGGGQYGEVYE---GVWKKY 283
>ref|NP_001070359.1| dual adapter for phosphotyrosine and 3-phosphotyrosine and
3-phosphoinositide [Bos taurus].
Length = 280
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +2
Query: 110 SPQSHPWIWDGISRIQESPMDLPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLC 289
S Q +W E DL +YHG L++ E LLL G DG+YLLRDS G+
Sbjct: 12 STQDPSDLWSRSDGEAELLQDLGWYHGNLTRHAAEALLLSNGCDGSYLLRDSNERIGLYS 71
Query: 290 LCV----SFKNFVYTYRIFKEKHGY 352
L V S K+F Y + K G+
Sbjct: 72 LSVRAKDSVKHFHVEYTGYSFKFGF 96
>ref|XP_002690130.1| PREDICTED: tyrosine-protein kinase FRK-like [Bos taurus].
Length = 514
Score = 50.4 bits (119), Expect = 2e-06
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +2
Query: 176 PYYHGPLSKRDCET-LLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGY 352
P++ G + + D E LL + G +L+R+SES G L V + V YRI + G
Sbjct: 125 PWFFGAIKRTDAEKQLLYSENQTGAFLIRESESQKGDFALSVLDEGVVKHYRIRRLDEGG 184
Query: 353 YTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKP 466
+ + +R+ F L E +S + K + GL V L KP
Sbjct: 185 FFL-----TRRRTFSTLNEFVSHYTKTSDGLCVKLGKP 217
>ref|XP_586141.3| PREDICTED: tyrosine-protein kinase FRK-like isoform 2 [Bos taurus].
Length = 514
Score = 50.4 bits (119), Expect = 2e-06
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +2
Query: 176 PYYHGPLSKRDCET-LLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGY 352
P++ G + + D E LL + G +L+R+SES G L V + V YRI + G
Sbjct: 125 PWFFGAIKRTDAEKQLLYSENQTGAFLIRESESQKGDFALSVLDEGVVKHYRIRRLDEGG 184
Query: 353 YTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKP 466
+ + +R+ F L E +S + K + GL V L KP
Sbjct: 185 FFL-----TRRRTFSTLNEFVSHYTKTSDGLCVKLGKP 217
>ref|NP_001029506.1| lymphocyte-specific protein tyrosine kinase [Bos taurus].
Length = 509
Score = 48.9 bits (115), Expect = 7e-06
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Frame = +2
Query: 176 PYYHGPLSKRDCET-LLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYT-------YRI 331
P++ LS++D E LL G G++L+R+SES AG L V ++F T Y+I
Sbjct: 126 PWFFKTLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSV--RDFDQTQGEVVKHYKI 183
Query: 332 FK-EKHGYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTSPCLRW 496
+K G+Y + R FP L EL+ + + GL L +P + P W
Sbjct: 184 RNLDKGGFYI------SPRVTFPGLHELVRHYMNTSDGLCTRLSRPCQTQKPQKPW 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,236,917
Number of extensions: 1039632
Number of successful extensions: 3392
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3380
Number of HSP's successfully gapped: 12
Length of query: 327
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,273,310
Effective search space: 3197221440
Effective search space used: 3197221440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013860
(983 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851826.1| PREDICTED: similar to SH2 domain protein 1B (EW... 225 6e-59
Alignment gi|XP_852122.1| PREDICTED: similar to SH2 domain protein 1A iso... 102 6e-22
Alignment gi|XP_542327.2| PREDICTED: similar to inositol polyphosphate ph... 92 8e-19
Alignment gi|XP_865096.1| PREDICTED: similar to SH2 domain protein 1A (Si... 69 7e-12
Alignment gi|XP_865080.1| PREDICTED: similar to SH2 domain protein 1A iso... 57 3e-08
Alignment gi|XP_539091.2| PREDICTED: similar to fyn-related kinase [Canis... 55 1e-07
Alignment gi|XP_548413.2| PREDICTED: similar to v-abl Abelson murine leuk... 52 9e-07
Alignment gi|XP_535669.2| PREDICTED: similar to Dual adapter for phosphot... 50 3e-06
Alignment gi|XP_854815.1| PREDICTED: similar to Megakaryocyte-associated ... 49 1e-05
Alignment gi|XP_851972.1| PREDICTED: similar to Proto-oncogene tyrosine-p... 49 1e-05
>ref|XP_851826.1| PREDICTED: similar to SH2 domain protein 1B (EWS/FLI1 activated
transcript 2) (EAT-2) [Canis familiaris].
Length = 144
Score = 225 bits (573), Expect = 6e-59
Identities = 105/139 (75%), Positives = 123/139 (88%), Gaps = 1/139 (0%)
Frame = +2
Query: 152 IQESPMDLPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRI 331
I+ P DLPYYHGPLSK+DCETLLLK G DGN+LLRDSES+ GVLCLCVSFKN VYTYRI
Sbjct: 6 IRRLPTDLPYYHGPLSKKDCETLLLKDGIDGNFLLRDSESLPGVLCLCVSFKNLVYTYRI 65
Query: 332 FKEKHGYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTSPCLRWRRSKI 511
F+E+ G+Y IQTVEGA ++IFPNLKELISKFEKP+QGLV+HL++P+K+ S C RWRRS+I
Sbjct: 66 FEERRGFYNIQTVEGAPKEIFPNLKELISKFEKPSQGLVMHLIQPIKKASSCPRWRRSQI 125
Query: 512 DLDGVYE-NSNSDYVDVLP 565
LD +YE NSNSDYV+VLP
Sbjct: 126 KLDSIYENNSNSDYVEVLP 144
>ref|XP_852122.1| PREDICTED: similar to SH2 domain protein 1A isoform 1 [Canis
familiaris].
Length = 128
Score = 102 bits (254), Expect = 6e-22
Identities = 46/98 (46%), Positives = 69/98 (70%)
Frame = +2
Query: 182 YHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTI 361
YHG +S+ E LLL G DG+YLLRDSES+ GV CLCV ++ ++YTYR+ + + G ++
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYQGYIYTYRVSQTETGSWSA 66
Query: 362 QTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKR 475
+T G ++ F +K LIS F+KP+QG+V+ L PV++
Sbjct: 67 ETAPGVHKRFFRKIKNLISAFQKPDQGIVIPLQYPVEK 104
>ref|XP_542327.2| PREDICTED: similar to inositol polyphosphate phosphatase-like 1
isoform 1 [Canis familiaris].
Length = 1264
Score = 92.0 bits (227), Expect = 8e-19
Identities = 45/99 (45%), Positives = 63/99 (63%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YH LS+ E LL + G DG++L+RDSES+AG LCV ++ V+TYRI + +
Sbjct: 26 WYHRDLSRAAAEELLARAGRDGSFLVRDSESVAGAFALCVLYQKHVHTYRILPDGEDFLA 85
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKR 475
+QT +G + F L ELI + +PNQGLV LL PV+R
Sbjct: 86 VQTSQGVPVRRFQTLGELIGLYAQPNQGLVCALLLPVER 124
>ref|XP_865096.1| PREDICTED: similar to SH2 domain protein 1A (Signaling lymphocyte
activation molecule-associated protein) (SLAM-associated
protein) (T cell signal transduction molecule SAP)
isoform 3 [Canis familiaris].
Length = 76
Score = 68.9 bits (167), Expect = 7e-12
Identities = 30/61 (49%), Positives = 44/61 (72%)
Frame = +2
Query: 182 YHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTI 361
YHG +S+ E LLL G DG+YLLRDSES+ GV CLCV ++ ++YTYR+ + + G ++
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYQGYIYTYRVSQTETGSWSA 66
Query: 362 Q 364
+
Sbjct: 67 E 67
>ref|XP_865080.1| PREDICTED: similar to SH2 domain protein 1A isoform 2 [Canis
familiaris].
Length = 106
Score = 56.6 bits (135), Expect = 3e-08
Identities = 26/74 (35%), Positives = 46/74 (62%)
Frame = +2
Query: 254 LRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTIQTVEGAKRQIFPNLKELISKFEKP 433
L D ES A + ++ ++YTYR+ + + G ++ +T G ++ F +K LIS F+KP
Sbjct: 9 LADGESKAQKEKVISWYQGYIYTYRVSQTETGSWSAETAPGVHKRFFRKIKNLISAFQKP 68
Query: 434 NQGLVVHLLKPVKR 475
+QG+V+ L PV++
Sbjct: 69 DQGIVIPLQYPVEK 82
>ref|XP_539091.2| PREDICTED: similar to fyn-related kinase [Canis familiaris].
Length = 505
Score = 55.1 bits (131), Expect = 1e-07
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +2
Query: 176 PYYHGPLSKRDCET-LLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGY 352
P++ G + + + E LL G + G +L+R+SES G L V + V YRI + G
Sbjct: 119 PWFFGAIKRTEAEKQLLYSGNQTGAFLIRESESQKGDFALSVLDERVVKHYRIRRMDEGE 178
Query: 353 YTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKP 466
+ + ++++ FP L E +S + K + GL V L KP
Sbjct: 179 FFL-----SQKRTFPTLNEFVSHYTKTSDGLCVQLGKP 211
>ref|XP_548413.2| PREDICTED: similar to v-abl Abelson murine leukemia viral oncogene
homolog 1 isoform a [Canis familiaris].
Length = 1131
Score = 52.0 bits (123), Expect = 9e-07
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YHGP+S+ E LL G +G++L+R+SES G + + ++ VY YRI G
Sbjct: 127 WYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLY 185
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV-KRTSPCL--------RWRRSKI 511
+ + F L EL+ GL+ L P KR P + +W +
Sbjct: 186 V-----SSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWEMERT 240
Query: 512 DLDGVYENSNSDYVDVLP*R*GDWTKH 592
D+ ++ Y +V G W K+
Sbjct: 241 DITMKHKLGGGQYGEVYE---GVWKKY 264
>ref|XP_535669.2| PREDICTED: similar to Dual adapter for phosphotyrosine and
3-phosphotyrosine and 3-phosphoinositide (hDAPP1) (B
cell adapter molecule of 32 kDa) (B lymphocyte adapter
protein Bam32) [Canis familiaris].
Length = 280
Score = 50.4 bits (119), Expect = 3e-06
Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Frame = +2
Query: 110 SPQSHPWIWDGISRIQESPMDLPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLC 289
S Q +W E +L +YHG L++ E LLL G DG+YLLRDS G+
Sbjct: 12 STQDPSDLWSRSDGDAELLQELGWYHGNLTRHAAEALLLSNGCDGSYLLRDSNERTGLYS 71
Query: 290 LCV----SFKNFVYTYRIFKEKHGYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLV 448
L V S K+F Y + K G+ F +LK+ + F NQ L+
Sbjct: 72 LSVRAKDSVKHFHVEYTGYSFKFGF-----------NEFSSLKDFVKHF--ANQPLI 115
>ref|XP_854815.1| PREDICTED: similar to Megakaryocyte-associated tyrosine-protein
kinase (Tyrosine-protein kinase CTK) (Protein kinase
HYL) (Hematopoietic consensus tyrosine-lacking kinase)
[Canis familiaris].
Length = 843
Score = 48.5 bits (114), Expect = 1e-05
Identities = 30/101 (29%), Positives = 52/101 (51%)
Frame = +2
Query: 173 LPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGY 352
+P++HG +S ++ L+ EDG +L+R+S G LCVSF V YR+ + G+
Sbjct: 359 MPWFHGKISGQEA-VQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVL-HRDGH 416
Query: 353 YTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKR 475
TI + F NL +++ + K + L+KP ++
Sbjct: 417 LTID-----EAVCFCNLMDMVEHYSKDKGAICTKLVKPKRK 452
>ref|XP_851972.1| PREDICTED: similar to Proto-oncogene tyrosine-protein kinase LCK
(P56-LCK) (LSK) (T cell-specific protein-tyrosine
kinase) isoform 2 [Canis familiaris].
Length = 509
Score = 48.5 bits (114), Expect = 1e-05
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Frame = +2
Query: 176 PYYHGPLSKRDCET-LLLKGGEDGNYLLRDSESMAGVLCLCV-----SFKNFVYTYRIFK 337
P++ LS++D E LL G G++L+R+SES AG L V + V Y+I
Sbjct: 126 PWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 185
Query: 338 -EKHGYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTSPCLRW 496
+K G+Y + R FP L EL+ + + GL L +P + P W
Sbjct: 186 LDKGGFYI------SPRITFPGLHELVRHYTNSSDGLCTRLSRPCQTQKPQKPW 233
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,897,775
Number of extensions: 1071330
Number of successful extensions: 3467
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3440
Number of HSP's successfully gapped: 10
Length of query: 327
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 224
Effective length of database: 15,440,896
Effective search space: 3458760704
Effective search space used: 3458760704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013860
(983 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355131.1| PREDICTED: SH2 domain-containing protein 1B-... 185 4e-47
Alignment gi|NP_001072143.1| SH2 domain-containing protein 1A [Sus scrofa]. 101 7e-22
Alignment gi|NP_001177208.1| phosphatidylinositol-3,4,5-trisphosphate 5-p... 92 4e-19
Alignment gi|XP_003122293.2| PREDICTED: tyrosine-protein kinase ABL1 [Sus... 52 5e-07
Alignment gi|XP_003129348.2| PREDICTED: dual adapter for phosphotyrosine ... 51 9e-07
Alignment gi|XP_001925827.2| PREDICTED: tyrosine-protein kinase FRK [Sus ... 51 9e-07
Alignment gi|XP_003123102.2| PREDICTED: megakaryocyte-associated tyrosine... 50 2e-06
Alignment gi|NP_001137185.1| tyrosine-protein kinase Lck [Sus scrofa]. 49 6e-06
Alignment gi|XP_003356350.1| PREDICTED: tyrosine-protein kinase Lck-like ... 48 7e-06
Alignment gi|NP_001098422.1| tyrosine-protein kinase SYK [Sus scrofa]. 48 7e-06
>ref|XP_003355131.1| PREDICTED: SH2 domain-containing protein 1B-like [Sus scrofa].
Length = 101
Score = 185 bits (469), Expect = 4e-47
Identities = 88/88 (100%), Positives = 88/88 (100%)
Frame = +2
Query: 302 FKNFVYTYRIFKEKHGYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTS 481
FKNFVYTYRIFKEKHGYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTS
Sbjct: 14 FKNFVYTYRIFKEKHGYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTS 73
Query: 482 PCLRWRRSKIDLDGVYENSNSDYVDVLP 565
PCLRWRRSKIDLDGVYENSNSDYVDVLP
Sbjct: 74 PCLRWRRSKIDLDGVYENSNSDYVDVLP 101
>ref|NP_001072143.1| SH2 domain-containing protein 1A [Sus scrofa].
Length = 128
Score = 101 bits (251), Expect = 7e-22
Identities = 47/100 (47%), Positives = 67/100 (67%)
Frame = +2
Query: 182 YHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTI 361
YHG +S+ E LLL G DG+YLLRDSES+ GV CLCV ++ ++YTYR+ + G +
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYQGYIYTYRVSHTETGSWIA 66
Query: 362 QTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTS 481
T G ++ F +K LIS F+KP+QG+V+ L PV++ S
Sbjct: 67 DTAPGVHKRFFRKIKNLISAFQKPDQGIVIPLQYPVEKKS 106
>ref|NP_001177208.1| phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2 [Sus
scrofa].
Length = 1264
Score = 92.0 bits (227), Expect = 4e-19
Identities = 45/99 (45%), Positives = 63/99 (63%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YH LS+ E LL + G DG++L+RDSES+AG LCV ++ V+TYRI + +
Sbjct: 26 WYHRDLSRAAAEELLARAGRDGSFLVRDSESVAGAFALCVLYQKHVHTYRILPDGEDFLA 85
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKR 475
+QT +G + F L ELI + +PNQGLV LL PV+R
Sbjct: 86 VQTSQGVPVRRFQTLGELIGLYAQPNQGLVCALLLPVER 124
>ref|XP_003122293.2| PREDICTED: tyrosine-protein kinase ABL1 [Sus scrofa].
Length = 1127
Score = 52.0 bits (123), Expect = 5e-07
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YHGP+S+ E LL G +G++L+R+SES G + + ++ VY YRI G
Sbjct: 127 WYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLY 185
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV-KRTSPCL--------RWRRSKI 511
+ + F L EL+ GL+ L P KR P + +W +
Sbjct: 186 V-----SSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWEMERT 240
Query: 512 DLDGVYENSNSDYVDVLP*R*GDWTKH 592
D+ ++ Y +V G W K+
Sbjct: 241 DITMKHKLGGGQYGEVYE---GVWKKY 264
>ref|XP_003129348.2| PREDICTED: dual adapter for phosphotyrosine and 3-phosphotyrosine
and 3-phosphoinositide-like [Sus scrofa].
Length = 458
Score = 51.2 bits (121), Expect = 9e-07
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Frame = +2
Query: 83 PH*ANCLHFSPQ---SHPWIWDGISRIQESPMDLPYYHGPLSKRDCETLLLKGGEDGNYL 253
PH +C +PQ + P++ ++RI L +YHG L++ E LLL G DG+YL
Sbjct: 183 PH--SCSSPTPQPRTAEPFVLSTLARIFTW---LRWYHGNLTRHAAEALLLSNGRDGSYL 237
Query: 254 LRDSESMAGVLCLCV----SFKNFVYTYRIFKEKHGYYTIQTVE 373
LRDS G+ L V S K+F Y + K G+ +V+
Sbjct: 238 LRDSNEKTGLYSLSVRAKDSVKHFHVEYTGYSLKFGFNEFSSVK 281
>ref|XP_001925827.2| PREDICTED: tyrosine-protein kinase FRK [Sus scrofa].
Length = 511
Score = 51.2 bits (121), Expect = 9e-07
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +2
Query: 176 PYYHGPLSKRDCET-LLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGY 352
P++ G + + D E LL ++G +L+R+SES G L V + V YRI + G
Sbjct: 124 PWFFGAIKRADAEKQLLYPENQEGAFLIRESESQKGDFSLSVLHEGIVKHYRIRRLDEGG 183
Query: 353 YTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKP 466
+ + +R+ F L E +S + + + GL V L KP
Sbjct: 184 FFL-----TRRRTFSTLNEFVSHYSRTSDGLCVKLGKP 216
>ref|XP_003123102.2| PREDICTED: megakaryocyte-associated tyrosine-protein kinase [Sus
scrofa].
Length = 571
Score = 50.1 bits (118), Expect = 2e-06
Identities = 31/101 (30%), Positives = 52/101 (51%)
Frame = +2
Query: 173 LPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGY 352
+P++HG +S ++ L+ EDG +L+R+S G LCVSF V YR+ + G+
Sbjct: 184 MPWFHGKISGQEA-VQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVL-HREGH 241
Query: 353 YTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKR 475
TI V F NL +++ + K + L+KP ++
Sbjct: 242 LTIDEV-----VCFCNLMDMVEHYSKDKGAICTKLVKPKRK 277
>ref|NP_001137185.1| tyrosine-protein kinase Lck [Sus scrofa].
Length = 509
Score = 48.5 bits (114), Expect = 6e-06
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Frame = +2
Query: 176 PYYHGPLSKRDCET-LLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHG- 349
P++ LS+RD E LL G G++L+R+SES AG L V R F + G
Sbjct: 126 PWFFKNLSRRDAERQLLAPGNTHGSFLIRESESTAGSFSLSV---------RDFDQNQGE 176
Query: 350 ---YYTIQTVEG-----AKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTSPCLRW 496
+Y I+ ++ + R FP L EL+ + + GL L +P + P W
Sbjct: 177 VMKHYKIRNLDKGGFYISPRITFPGLHELVHHYTNSSDGLCTRLNRPCQTQKPQKPW 233
>ref|XP_003356350.1| PREDICTED: tyrosine-protein kinase Lck-like [Sus scrofa].
Length = 444
Score = 48.1 bits (113), Expect = 7e-06
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Frame = +2
Query: 176 PYYHGPLSKRDCET-LLLKGGEDGNYLLRDSESMAGVLCLCV-----SFKNFVYTYRIFK 337
P++ LS++D E LL G G++L+R+SES AG L V + V Y+I
Sbjct: 126 PWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 185
Query: 338 -EKHGYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTSPCLRW 496
+K G+Y + R FP L EL+ + + GL L +P + P W
Sbjct: 186 LDKGGFYI------SPRITFPGLHELVHHYTNSSDGLCTRLNRPCQTQKPQKPW 233
>ref|NP_001098422.1| tyrosine-protein kinase SYK [Sus scrofa].
Length = 628
Score = 48.1 bits (113), Expect = 7e-06
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +2
Query: 158 ESPMDLPYYHGPLSKRDCETLLLKGG-EDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIF 334
+S LP++ G +++ + E L++GG DG YLLR S + G L V++ + Y I
Sbjct: 3 DSANHLPFFFGQITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAYDRKAHHYTIE 62
Query: 335 KEKHGYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKR 475
+E +G Y I G + P EL + GLV L P R
Sbjct: 63 RELNGTYAI---SGGRTHGSP--AELCHYHSQELDGLVCLLKNPFNR 104
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,609,460
Number of extensions: 667830
Number of successful extensions: 2202
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2193
Number of HSP's successfully gapped: 10
Length of query: 327
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,879,129
Effective search space: 2024441412
Effective search space used: 2024441412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013860
(983 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036139.3| SH2 domain-containing protein 1B [Mus musculus]. 185 4e-47
Alignment gi|NP_001028671.1| SH2 domain protein 1B2 [Mus musculus]. 175 4e-44
Alignment gi|NP_035494.1| SH2 domain-containing protein 1A [Mus musculus]. 102 3e-22
Alignment gi|NP_001116211.1| phosphatidylinositol-3,4,5-trisphosphate 5-p... 90 2e-18
Alignment gi|NP_034697.2| phosphatidylinositol-3,4,5-trisphosphate 5-phos... 90 2e-18
Alignment gi|NP_001103663.1| phosphatidylinositol-3,4,5-trisphosphate 5-p... 85 7e-17
Alignment gi|NP_001103662.1| phosphatidylinositol-3,4,5-trisphosphate 5-p... 85 7e-17
Alignment gi|NP_034696.2| phosphatidylinositol-3,4,5-trisphosphate 5-phos... 85 7e-17
Alignment gi|NP_036062.1| dual adapter for phosphotyrosine and 3-phosphot... 52 5e-07
Alignment gi|NP_001106174.1| tyrosine-protein kinase ABL1 isoform a [Mus ... 52 5e-07
>ref|NP_036139.3| SH2 domain-containing protein 1B [Mus musculus].
Length = 132
Score = 185 bits (470), Expect = 4e-47
Identities = 87/133 (65%), Positives = 107/133 (80%)
Frame = +2
Query: 167 MDLPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKH 346
MDLPYYHG L+KR+CE LLLKGG DGN+L+RDSES+ G LCLCVSFK VY+YRIF+EKH
Sbjct: 1 MDLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKH 60
Query: 347 GYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTSPCLRWRRSKIDLDGV 526
GYY I+T R IFPNL+EL+SK+ KP QGLVVHL P+ R + C R RR +++L+ V
Sbjct: 61 GYYRIETNAHTPRTIFPNLQELVSKYGKPGQGLVVHLSNPIMRNNLCQRGRRMELELN-V 119
Query: 527 YENSNSDYVDVLP 565
YEN++ +YVDVLP
Sbjct: 120 YENTDKEYVDVLP 132
>ref|NP_001028671.1| SH2 domain protein 1B2 [Mus musculus].
Length = 132
Score = 175 bits (444), Expect = 4e-44
Identities = 83/133 (62%), Positives = 103/133 (77%)
Frame = +2
Query: 167 MDLPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKH 346
MDLPYYHG L+KR+CE LLLKGG DGN+L+RDSES+ G LCLCVSFK VY YRIF+EK+
Sbjct: 1 MDLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYNYRIFREKN 60
Query: 347 GYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTSPCLRWRRSKIDLDGV 526
GYY I+T + IFPNL+ELISKF+ P QG+VVHL P+ R+ C RR ++ + V
Sbjct: 61 GYYRIETEPSTPKTIFPNLEELISKFKTPGQGMVVHLSNPIMRSGFCPGARRLNLEAN-V 119
Query: 527 YENSNSDYVDVLP 565
YEN++ +YVDVLP
Sbjct: 120 YENTDEEYVDVLP 132
>ref|NP_035494.1| SH2 domain-containing protein 1A [Mus musculus].
Length = 126
Score = 102 bits (255), Expect = 3e-22
Identities = 47/100 (47%), Positives = 70/100 (70%)
Frame = +2
Query: 182 YHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTI 361
YHG +S+ E LLL G DG+YLLRDSES+ GV CLCV ++ ++YTYR+ + + G ++
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYQGYIYTYRVSQTETGSWSA 66
Query: 362 QTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTS 481
+T G ++ F +K LIS F+KP+QG+V L PV+++S
Sbjct: 67 ETAPGVHKRFFRKVKNLISAFQKPDQGIVTPLQYPVEKSS 106
>ref|NP_001116211.1| phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2 [Mus
musculus].
Length = 1257
Score = 90.1 bits (222), Expect = 2e-18
Identities = 44/98 (44%), Positives = 62/98 (63%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YH LS+ E LL + G DG++L+RDSES+AG LCV ++ V+TYRI + +
Sbjct: 21 WYHRDLSRAAAEELLARAGRDGSFLVRDSESVAGAFALCVLYQKHVHTYRILPDGEDFLA 80
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVK 472
+QT +G + F L ELI + +PNQGLV LL PV+
Sbjct: 81 VQTSQGVPVRRFQTLGELIGLYAQPNQGLVCALLLPVE 118
>ref|NP_034697.2| phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2 [Mus
musculus].
Length = 1257
Score = 90.1 bits (222), Expect = 2e-18
Identities = 44/98 (44%), Positives = 62/98 (63%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YH LS+ E LL + G DG++L+RDSES+AG LCV ++ V+TYRI + +
Sbjct: 21 WYHRDLSRAAAEELLARAGRDGSFLVRDSESVAGAFALCVLYQKHVHTYRILPDGEDFLA 80
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVK 472
+QT +G + F L ELI + +PNQGLV LL PV+
Sbjct: 81 VQTSQGVPVRRFQTLGELIGLYAQPNQGLVCALLLPVE 118
>ref|NP_001103663.1| phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 isoform 3
[Mus musculus].
Length = 1130
Score = 85.1 bits (209), Expect = 7e-17
Identities = 41/95 (43%), Positives = 58/95 (61%)
Frame = +2
Query: 185 HGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTIQ 364
HG +++ E LL + G+DG++L+R SES+ LCV F+N VYTYRI + +T+Q
Sbjct: 10 HGNITRSKAEELLSRAGKDGSFLVRASESIPRAYALCVLFRNCVYTYRILPNEDDKFTVQ 69
Query: 365 TVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV 469
EG + F L +LI ++K N GLV HL PV
Sbjct: 70 ASEGVPMRFFTKLDQLIDFYKKENMGLVTHLQYPV 104
>ref|NP_001103662.1| phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 isoform 2
[Mus musculus].
Length = 1190
Score = 85.1 bits (209), Expect = 7e-17
Identities = 41/95 (43%), Positives = 58/95 (61%)
Frame = +2
Query: 185 HGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTIQ 364
HG +++ E LL + G+DG++L+R SES+ LCV F+N VYTYRI + +T+Q
Sbjct: 10 HGNITRSKAEELLSRAGKDGSFLVRASESIPRAYALCVLFRNCVYTYRILPNEDDKFTVQ 69
Query: 365 TVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV 469
EG + F L +LI ++K N GLV HL PV
Sbjct: 70 ASEGVPMRFFTKLDQLIDFYKKENMGLVTHLQYPV 104
>ref|NP_034696.2| phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 isoform 1
[Mus musculus].
Length = 1191
Score = 85.1 bits (209), Expect = 7e-17
Identities = 41/95 (43%), Positives = 58/95 (61%)
Frame = +2
Query: 185 HGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTIQ 364
HG +++ E LL + G+DG++L+R SES+ LCV F+N VYTYRI + +T+Q
Sbjct: 10 HGNITRSKAEELLSRAGKDGSFLVRASESIPRAYALCVLFRNCVYTYRILPNEDDKFTVQ 69
Query: 365 TVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV 469
EG + F L +LI ++K N GLV HL PV
Sbjct: 70 ASEGVPMRFFTKLDQLIDFYKKENMGLVTHLQYPV 104
>ref|NP_036062.1| dual adapter for phosphotyrosine and 3-phosphotyrosine and
3-phosphoinositide [Mus musculus].
Length = 280
Score = 52.4 bits (124), Expect = 5e-07
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +2
Query: 104 HFSPQSHPWIWDGISRIQESPMDLPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGV 283
+ S Q +W + DL +YHG L++ E LLL G DG+YLLRDS G+
Sbjct: 10 NMSTQDPSELWGRADGGTDLLQDLGWYHGNLTRHAAEALLLSNGRDGSYLLRDSNEQTGL 69
Query: 284 LCLCV----SFKNFVYTYRIFKEKHGY 352
L V S K+F Y + K G+
Sbjct: 70 YSLSVRAKDSVKHFHVEYTGYSFKFGF 96
>ref|NP_001106174.1| tyrosine-protein kinase ABL1 isoform a [Mus musculus].
Length = 1142
Score = 52.4 bits (124), Expect = 5e-07
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YHGP+S+ E LL G +G++L+R+SES G + + ++ VY YRI G
Sbjct: 146 WYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLY 204
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV-KRTSPCL--------RWRRSKI 511
+ + F L EL+ GL+ L P KR P + +W +
Sbjct: 205 V-----SSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTIYGVSPNYDKWEMERT 259
Query: 512 DLDGVYENSNSDYVDVLP*R*GDWTKH 592
D+ ++ Y +V G W K+
Sbjct: 260 DITMKHKLGGGQYGEVYE---GVWKKY 283
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,423,988
Number of extensions: 898873
Number of successful extensions: 2988
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2970
Number of HSP's successfully gapped: 11
Length of query: 327
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 225
Effective length of database: 12,553,887
Effective search space: 2824624575
Effective search space used: 2824624575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013860
(983 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444512.2| SH2 domain-containing protein 1B [Homo sapiens]. 221 8e-58
Alignment gi|NP_002342.1| SH2 domain-containing protein 1A isoform 1 [Hom... 102 5e-22
Alignment gi|NP_001108409.1| SH2 domain-containing protein 1A isoform 2 [... 102 5e-22
Alignment gi|NP_001558.3| phosphatidylinositol-3,4,5-trisphosphate 5-phos... 90 3e-18
Alignment gi|NP_005532.2| phosphatidylinositol-3,4,5-trisphosphate 5-phos... 84 2e-16
Alignment gi|NP_001017915.1| phosphatidylinositol-3,4,5-trisphosphate 5-p... 84 2e-16
Alignment gi|NP_055210.2| dual adapter for phosphotyrosine and 3-phosphot... 53 5e-07
Alignment gi|NP_009297.2| tyrosine-protein kinase ABL1 isoform b [Homo sa... 52 8e-07
Alignment gi|NP_005148.2| tyrosine-protein kinase ABL1 isoform a [Homo sa... 52 8e-07
Alignment gi|NP_002022.1| tyrosine-protein kinase FRK [Homo sapiens]. 51 1e-06
>ref|NP_444512.2| SH2 domain-containing protein 1B [Homo sapiens].
Length = 132
Score = 221 bits (563), Expect = 8e-58
Identities = 104/133 (78%), Positives = 119/133 (89%)
Frame = +2
Query: 167 MDLPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKH 346
MDLPYYHG L+K+DCETLLLK G DGN+LLRDSES+ GVLCLCVSFKN VYTYRIF+EKH
Sbjct: 1 MDLPYYHGRLTKQDCETLLLKEGVDGNFLLRDSESIPGVLCLCVSFKNIVYTYRIFREKH 60
Query: 347 GYYTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTSPCLRWRRSKIDLDGV 526
GYY IQT EG+ +Q+FP+LKELISKFEKPNQG+VVHLLKP+KRTSP LRWR K++L+
Sbjct: 61 GYYRIQTAEGSPKQVFPSLKELISKFEKPNQGMVVHLLKPIKRTSPSLRWRGLKLELE-T 119
Query: 527 YENSNSDYVDVLP 565
+ NSNSDYVDVLP
Sbjct: 120 FVNSNSDYVDVLP 132
>ref|NP_002342.1| SH2 domain-containing protein 1A isoform 1 [Homo sapiens].
Length = 128
Score = 102 bits (254), Expect = 5e-22
Identities = 47/100 (47%), Positives = 69/100 (69%)
Frame = +2
Query: 182 YHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTI 361
YHG +S+ E LLL G DG+YLLRDSES+ GV CLCV + ++YTYR+ + + G ++
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSA 66
Query: 362 QTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTS 481
+T G ++ F +K LIS F+KP+QG+V+ L PV++ S
Sbjct: 67 ETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKS 106
>ref|NP_001108409.1| SH2 domain-containing protein 1A isoform 2 [Homo sapiens].
Length = 125
Score = 102 bits (254), Expect = 5e-22
Identities = 47/100 (47%), Positives = 69/100 (69%)
Frame = +2
Query: 182 YHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTI 361
YHG +S+ E LLL G DG+YLLRDSES+ GV CLCV + ++YTYR+ + + G ++
Sbjct: 7 YHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSA 66
Query: 362 QTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVKRTS 481
+T G ++ F +K LIS F+KP+QG+V+ L PV++ S
Sbjct: 67 ETAPGVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKS 106
>ref|NP_001558.3| phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2 [Homo
sapiens].
Length = 1258
Score = 90.1 bits (222), Expect = 3e-18
Identities = 44/98 (44%), Positives = 62/98 (63%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YH LS+ E LL + G DG++L+RDSES+AG LCV ++ V+TYRI + +
Sbjct: 21 WYHRDLSRAAAEELLARAGRDGSFLVRDSESVAGAFALCVLYQKHVHTYRILPDGEDFLA 80
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPVK 472
+QT +G + F L ELI + +PNQGLV LL PV+
Sbjct: 81 VQTSQGVPVRRFQTLGELIGLYAQPNQGLVCALLLPVE 118
>ref|NP_005532.2| phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 isoform b
[Homo sapiens].
Length = 1188
Score = 84.3 bits (207), Expect = 2e-16
Identities = 40/95 (42%), Positives = 59/95 (62%)
Frame = +2
Query: 185 HGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTIQ 364
HG +++ E LL + G+DG++L+R SES++ LCV ++N VYTYRI + +T+Q
Sbjct: 7 HGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQ 66
Query: 365 TVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV 469
EG + F L +LI ++K N GLV HL PV
Sbjct: 67 ASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPV 101
>ref|NP_001017915.1| phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 isoform a
[Homo sapiens].
Length = 1189
Score = 84.3 bits (207), Expect = 2e-16
Identities = 40/95 (42%), Positives = 59/95 (62%)
Frame = +2
Query: 185 HGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYTIQ 364
HG +++ E LL + G+DG++L+R SES++ LCV ++N VYTYRI + +T+Q
Sbjct: 7 HGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQ 66
Query: 365 TVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV 469
EG + F L +LI ++K N GLV HL PV
Sbjct: 67 ASEGVSMRFFTKLDQLIEFYKKENMGLVTHLQYPV 101
>ref|NP_055210.2| dual adapter for phosphotyrosine and 3-phosphotyrosine and
3-phosphoinositide [Homo sapiens].
Length = 280
Score = 52.8 bits (125), Expect = 5e-07
Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 5/147 (3%)
Frame = +2
Query: 110 SPQSHPWIWDGISRIQESPMDLPYYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLC 289
S Q +W E DL +YHG L++ E LLL G DG+YLLRDS G+
Sbjct: 12 STQDPSDLWSRSDGEAELLQDLGWYHGNLTRHAAEALLLSNGCDGSYLLRDSNETTGLYS 71
Query: 290 LCV----SFKNFVYTYRIFKEKHGYYTIQTVEGAKRQIFPNLKELISKF-EKPNQGLVVH 454
L V S K+F Y + K G+ F +LK+ + F +P G
Sbjct: 72 LSVRAKDSVKHFHVEYTGYSFKFGF-----------NEFSSLKDFVKHFANQPLIGSETG 120
Query: 455 LLKPVKRTSPCLRWRRSKIDLDGVYEN 535
L +K P K++ +YE+
Sbjct: 121 TLMVLKHPYP------RKVEEPSIYES 141
>ref|NP_009297.2| tyrosine-protein kinase ABL1 isoform b [Homo sapiens].
Length = 1149
Score = 52.0 bits (123), Expect = 8e-07
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YHGP+S+ E LL G +G++L+R+SES G + + ++ VY YRI G
Sbjct: 146 WYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLY 204
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV-KRTSPCL--------RWRRSKI 511
+ + F L EL+ GL+ L P KR P + +W +
Sbjct: 205 V-----SSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWEMERT 259
Query: 512 DLDGVYENSNSDYVDVLP*R*GDWTKH 592
D+ ++ Y +V G W K+
Sbjct: 260 DITMKHKLGGGQYGEVYE---GVWKKY 283
>ref|NP_005148.2| tyrosine-protein kinase ABL1 isoform a [Homo sapiens].
Length = 1130
Score = 52.0 bits (123), Expect = 8e-07
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Frame = +2
Query: 179 YYHGPLSKRDCETLLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGYYT 358
+YHGP+S+ E LL G +G++L+R+SES G + + ++ VY YRI G
Sbjct: 127 WYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLY 185
Query: 359 IQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKPV-KRTSPCL--------RWRRSKI 511
+ + F L EL+ GL+ L P KR P + +W +
Sbjct: 186 V-----SSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWEMERT 240
Query: 512 DLDGVYENSNSDYVDVLP*R*GDWTKH 592
D+ ++ Y +V G W K+
Sbjct: 241 DITMKHKLGGGQYGEVYE---GVWKKY 264
>ref|NP_002022.1| tyrosine-protein kinase FRK [Homo sapiens].
Length = 505
Score = 51.2 bits (121), Expect = 1e-06
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +2
Query: 176 PYYHGPLSKRDCET-LLLKGGEDGNYLLRDSESMAGVLCLCVSFKNFVYTYRIFKEKHGY 352
P++ G + + D E LL + G++L+R+SES G L V V YRI + G
Sbjct: 115 PWFFGAIGRSDAEKQLLYSENKTGSFLIRESESQKGEFSLSVLDGAVVKHYRIKRLDEGG 174
Query: 353 YTIQTVEGAKRQIFPNLKELISKFEKPNQGLVVHLLKP 466
+ + +R+IF L E +S + K + GL V L KP
Sbjct: 175 FFL-----TRRRIFSTLNEFVSHYTKTSDGLCVKLGKP 207
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,295,809
Number of extensions: 1064265
Number of successful extensions: 3561
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3535
Number of HSP's successfully gapped: 16
Length of query: 327
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,901,872
Effective search space: 3338019328
Effective search space used: 3338019328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013860
(983 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894126.2| Sus scrofa unplaced genomic scaffold ChrUScaf2010 591 e-166
Sscrofa_Chr04 591 e-166
>gb|GL894126.2| Sus scrofa unplaced genomic scaffold ChrUScaf2010
Length = 62080
Score = 591 bits (298), Expect = e-166
Identities = 301/302 (99%)
Strand = Plus / Minus
Query: 1 aatcttgcgaaattatctgagtcccacagagcaaacttatctgactgccaccagccagag 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 aatcttgtgaaattatctgagtcccacagagcaaacttatctgactgccaccagccagag 2494
Query: 61 gagcacgaggtgtttccacaggcctcattaggccaattgtctccacttttctcctcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 gagcacgaggtgtttccacaggcctcattaggccaattgtctccacttttctcctcagag 2434
Query: 121 ccatccctggatttgggacgggatttcaagaatacaagagtcccccatggatttgcctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 ccatccctggatttgggacgggatttcaagaatacaagagtcccccatggatttgcctta 2374
Query: 181 ctaccacggccctctgtccaagagagactgtgagaccttgctgctcaagggaggggagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 ctaccacggccctctgtccaagagagactgtgagaccttgctgctcaagggaggggagga 2314
Query: 241 tggcaattatctgttaagggacagcgagtccatggcaggagtcctgtgcctctgtgtctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 tggcaattatctgttaagggacagcgagtccatggcaggagtcctgtgcctctgtgtctc 2254
Query: 301 gt 302
||
Sbjct: 2253 gt 2252
Score = 85.7 bits (43), Expect = 4e-14
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 182 taccacggccctctgtccaagagagactgtgagaccttgctgctcaagggaggggaggat 241
||||| ||||||||||||||| | |||||| |||||| |||||||||| || ||||||
Sbjct: 21005 taccatggccctctgtccaagcaaaactgtgggaccttactgctcaaggaagtagaggat 20946
Query: 242 ggcaattatctgttaagggacag 264
||||||||||||||| |||||||
Sbjct: 20945 ggcaattatctgttacgggacag 20923
>Sscrofa_Chr04
|| Length = 143465943
Score = 591 bits (298), Expect = e-166
Identities = 301/302 (99%)
Strand = Plus / Plus
Query: 1 aatcttgcgaaattatctgagtcccacagagcaaacttatctgactgccaccagccagag 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95956860 aatcttgtgaaattatctgagtcccacagagcaaacttatctgactgccaccagccagag 95956919
Query: 61 gagcacgaggtgtttccacaggcctcattaggccaattgtctccacttttctcctcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95956920 gagcacgaggtgtttccacaggcctcattaggccaattgtctccacttttctcctcagag 95956979
Query: 121 ccatccctggatttgggacgggatttcaagaatacaagagtcccccatggatttgcctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95956980 ccatccctggatttgggacgggatttcaagaatacaagagtcccccatggatttgcctta 95957039
Query: 181 ctaccacggccctctgtccaagagagactgtgagaccttgctgctcaagggaggggagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95957040 ctaccacggccctctgtccaagagagactgtgagaccttgctgctcaagggaggggagga 95957099
Query: 241 tggcaattatctgttaagggacagcgagtccatggcaggagtcctgtgcctctgtgtctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95957100 tggcaattatctgttaagggacagcgagtccatggcaggagtcctgtgcctctgtgtctc 95957159
Query: 301 gt 302
||
Sbjct: 95957160 gt 95957161
Score = 565 bits (285), Expect = e-158
Identities = 285/285 (100%)
Strand = Plus / Minus
Query: 530 gagaacagtaacagtgattatgtggacgtcttgccttgaagataaggagactggacgaag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95921855 gagaacagtaacagtgattatgtggacgtcttgccttgaagataaggagactggacgaag 95921796
Query: 590 cacttatagaagagatgggatgacagctctcactagcgaccctgcttcttctgcaggtgt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95921795 cacttatagaagagatgggatgacagctctcactagcgaccctgcttcttctgcaggtgt 95921736
Query: 650 aagtctgaaaggccaaactccaggggacaatttagactctctggtctgagtgaatgaaga 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95921735 aagtctgaaaggccaaactccaggggacaatttagactctctggtctgagtgaatgaaga 95921676
Query: 710 tgttctgtccaccagcctcagacaaatcattcccccatccccaccgcttcccatgcatac 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95921675 tgttctgtccaccagcctcagacaaatcattcccccatccccaccgcttcccatgcatac 95921616
Query: 770 accacaagcagctttgaaactccttttcctcgctcactcttcttt 814
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95921615 accacaagcagctttgaaactccttttcctcgctcactcttcttt 95921571
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 362 cagaccgtggaaggtgctaaaagacagatctttccaaacctaaaggaactgatctccaag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95923568 cagaccgtggaaggtgctaaaagacagatctttccaaacctaaaggaactgatctccaag 95923509
Query: 422 tttgaaaaaccaaaccaagggctagtggttcacctcttaaagccagtaaagagaaccagc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95923508 tttgaaaaaccaaaccaagggctagtggttcacctcttaaagccagtaaagagaaccagc 95923449
Query: 482 ccctgcctgagatggagaagatcgaagatagatttggatggtgtttatg 530
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95923448 ccctgcctgagatggagaagatcgaagatagatttggatggtgtttatg 95923400
Score = 141 bits (71), Expect = 8e-31
Identities = 112/126 (88%), Gaps = 2/126 (1%)
Strand = Plus / Minus
Query: 860 gctaccactgcatcacggttgacacc-cttcttccagatcanngcatcannnnnnncagc 918
|||||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct: 95921455 gctaccactgcatcacggttgacaccncttcttccagatcaggcaatcaggggggcaagc 95921396
Query: 919 ctcccacagaagaga-agcacaggctgctggttaggagtctgagttccagtcctgtggct 977
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95921395 ctcccacagaagagagagcacaggctgctggttaggagtctgagttccagtcctgtggct 95921336
Query: 978 atgtga 983
||||||
Sbjct: 95921335 atgtga 95921330
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 301 gtttaaaaattttgtctacacataccgaatcttcaaagagaaacatgggtattacactat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95926267 gtttaaaaattttgtctacacataccgaatcttcaaagagaaacatgggtattacactat 95926208
Query: 361 acag 364
||||
Sbjct: 95926207 acag 95926204
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,029,040
Number of extensions: 205
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 8
Length of query: 983
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 962
Effective length of database: 2,808,413,156
Effective search space: 2701693456072
Effective search space used: 2701693456072
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)