Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013863
(1253 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178356.1| short coiled-coil protein [Bos taurus]. 224 1e-58
Alignment gi|XP_002694385.1| PREDICTED: short coiled-coil protein isoform... 224 1e-58
Alignment gi|XP_002700226.1| PREDICTED: short coiled-coil protein-like [B... 206 3e-53
Alignment gi|XP_002707406.1| PREDICTED: short coiled-coil protein-like [B... 206 3e-53
Alignment gi|XP_002694384.1| PREDICTED: short coiled-coil protein isoform... 157 2e-38
Alignment gi|XP_002701690.1| PREDICTED: short coiled-coil protein isoform... 157 2e-38
>ref|NP_001178356.1| short coiled-coil protein [Bos taurus].
Length = 159
Score = 224 bits (571), Expect = 1e-58
Identities = 116/131 (88%), Positives = 120/131 (91%)
Frame = +1
Query: 4 GQRGRGCECQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDA 183
G++G GC CQ QV RPEAS R+LPLPAP ADHSSRILY R +SL PKMMNADMDAVDA
Sbjct: 29 GRKGWGCRCQLVQVFRPEASYRALPLPAPQKADHSSRILYPRRRSLLPKMMNADMDAVDA 88
Query: 184 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 363
ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
Sbjct: 89 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 148
Query: 364 FQTTDTKSKRK 396
FQTTDTKSKRK
Sbjct: 149 FQTTDTKSKRK 159
>ref|XP_002694385.1| PREDICTED: short coiled-coil protein isoform 2 [Bos taurus].
Length = 159
Score = 224 bits (571), Expect = 1e-58
Identities = 116/131 (88%), Positives = 120/131 (91%)
Frame = +1
Query: 4 GQRGRGCECQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDA 183
G++G GC CQ QV RPEAS R+LPLPAP ADHSSRILY R +SL PKMMNADMDAVDA
Sbjct: 29 GRKGWGCRCQLVQVFRPEASYRALPLPAPQKADHSSRILYPRRRSLLPKMMNADMDAVDA 88
Query: 184 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 363
ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
Sbjct: 89 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 148
Query: 364 FQTTDTKSKRK 396
FQTTDTKSKRK
Sbjct: 149 FQTTDTKSKRK 159
>ref|XP_002700226.1| PREDICTED: short coiled-coil protein-like [Bos taurus].
Length = 245
Score = 206 bits (525), Expect = 3e-53
Identities = 110/122 (90%), Positives = 111/122 (90%)
Frame = +1
Query: 31 QSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEK 210
Q QVSRPEAS R+LPLPAP ADHSSRILY R SL PKMMNADMD VDAENQVELEEK
Sbjct: 124 QLVQVSRPEASYRTLPLPAPQKADHSSRILYPRRGSLLPKMMNADMDVVDAENQVELEEK 183
Query: 211 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 390
TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVL QYIENLMSASSVFQTTDTKSK
Sbjct: 184 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLKQYIENLMSASSVFQTTDTKSK 243
Query: 391 RK 396
RK
Sbjct: 244 RK 245
>ref|XP_002707406.1| PREDICTED: short coiled-coil protein-like [Bos taurus].
Length = 245
Score = 206 bits (525), Expect = 3e-53
Identities = 110/122 (90%), Positives = 111/122 (90%)
Frame = +1
Query: 31 QSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEK 210
Q QVSRPEAS R+LPLPAP ADHSSRILY R SL PKMMNADMD VDAENQVELEEK
Sbjct: 124 QLVQVSRPEASYRTLPLPAPQKADHSSRILYPRRGSLLPKMMNADMDVVDAENQVELEEK 183
Query: 211 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 390
TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVL QYIENLMSASSVFQTTDTKSK
Sbjct: 184 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLKQYIENLMSASSVFQTTDTKSK 243
Query: 391 RK 396
RK
Sbjct: 244 RK 245
>ref|XP_002694384.1| PREDICTED: short coiled-coil protein isoform 1 [Bos taurus].
Length = 131
Score = 157 bits (397), Expect = 2e-38
Identities = 88/131 (67%), Positives = 92/131 (70%)
Frame = +1
Query: 4 GQRGRGCECQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDA 183
G++G GC CQ QV RPEAS R+LPLPAP ADHSSRILY R +SL PKMMNADMD
Sbjct: 29 GRKGWGCRCQLVQVFRPEASYRALPLPAPQKADHSSRILYPRRRSLLPKMMNADMD---- 84
Query: 184 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 363
DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
Sbjct: 85 ------------------------DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 120
Query: 364 FQTTDTKSKRK 396
FQTTDTKSKRK
Sbjct: 121 FQTTDTKSKRK 131
>ref|XP_002701690.1| PREDICTED: short coiled-coil protein isoform 2 [Bos taurus].
Length = 131
Score = 157 bits (397), Expect = 2e-38
Identities = 88/131 (67%), Positives = 92/131 (70%)
Frame = +1
Query: 4 GQRGRGCECQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDA 183
G++G GC CQ QV RPEAS R+LPLPAP ADHSSRILY R +SL PKMMNADMD
Sbjct: 29 GRKGWGCRCQLVQVFRPEASYRALPLPAPQKADHSSRILYPRRRSLLPKMMNADMD---- 84
Query: 184 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 363
DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
Sbjct: 85 ------------------------DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 120
Query: 364 FQTTDTKSKRK 396
FQTTDTKSKRK
Sbjct: 121 FQTTDTKSKRK 131
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,708,216
Number of extensions: 823479
Number of successful extensions: 2822
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2812
Number of HSP's successfully gapped: 6
Length of query: 417
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,207,134
Effective search space: 4432625808
Effective search space used: 4432625808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013863
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013863
(1253 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848367.1| PREDICTED: similar to short coiled-coil protein... 186 3e-47
Alignment gi|XP_855895.1| PREDICTED: similar to short coiled-coil protein... 119 5e-27
>ref|XP_848367.1| PREDICTED: similar to short coiled-coil protein isoform 1 [Canis
familiaris].
Length = 122
Score = 186 bits (473), Expect = 3e-47
Identities = 100/121 (82%), Positives = 107/121 (88%)
Frame = +1
Query: 34 STQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKT 213
S++ + + S+PL + DHSSRILY RPKSL P+MMNADMDAVDAENQVELEEKT
Sbjct: 4 SSKEEEEDNTFTSIPLTDDI--DHSSRILYPRPKSLLPEMMNADMDAVDAENQVELEEKT 61
Query: 214 RLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKR 393
RLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKR
Sbjct: 62 RLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKR 121
Query: 394 K 396
K
Sbjct: 122 K 122
>ref|XP_855895.1| PREDICTED: similar to short coiled-coil protein isoform 2 [Canis
familiaris].
Length = 94
Score = 119 bits (299), Expect = 5e-27
Identities = 72/121 (59%), Positives = 79/121 (65%)
Frame = +1
Query: 34 STQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKT 213
S++ + + S+PL + DHSSRILY RPKSL P+MMNADMD
Sbjct: 4 SSKEEEEDNTFTSIPLTDDI--DHSSRILYPRPKSLLPEMMNADMD-------------- 47
Query: 214 RLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKR 393
DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKR
Sbjct: 48 --------------DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKR 93
Query: 394 K 396
K
Sbjct: 94 K 94
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,388,286
Number of extensions: 850874
Number of successful extensions: 3004
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2995
Number of HSP's successfully gapped: 2
Length of query: 417
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 312
Effective length of database: 15,374,224
Effective search space: 4796757888
Effective search space used: 4796757888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013863
(1253 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357065.1| PREDICTED: LOW QUALITY PROTEIN: short coiled... 253 2e-67
>ref|XP_003357065.1| PREDICTED: LOW QUALITY PROTEIN: short coiled-coil protein-like [Sus
scrofa].
Length = 159
Score = 253 bits (646), Expect = 2e-67
Identities = 130/131 (99%), Positives = 130/131 (99%)
Frame = +1
Query: 4 GQRGRGCECQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDA 183
GQRGRGC CQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDA
Sbjct: 29 GQRGRGCXCQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDA 88
Query: 184 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 363
ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
Sbjct: 89 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 148
Query: 364 FQTTDTKSKRK 396
FQTTDTKSKRK
Sbjct: 149 FQTTDTKSKRK 159
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,499,168
Number of extensions: 524031
Number of successful extensions: 1929
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1925
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 316
Effective length of database: 8,829,335
Effective search space: 2790069860
Effective search space used: 2790069860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013863
(1253 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034226.1| short coiled-coil protein isoform a [Mus mus... 172 4e-43
Alignment gi|XP_001472787.1| PREDICTED: short coiled-coil protein-like [M... 172 4e-43
Alignment gi|XP_003086376.1| PREDICTED: short coiled-coil protein-like [M... 172 4e-43
Alignment gi|NP_062682.1| short coiled-coil protein isoform b [Mus muscul... 157 1e-38
Alignment gi|XP_003085251.1| PREDICTED: short coiled-coil protein-like [M... 155 6e-38
>ref|NP_001034226.1| short coiled-coil protein isoform a [Mus musculus].
Length = 125
Score = 172 bits (437), Expect = 4e-43
Identities = 91/99 (91%), Positives = 93/99 (93%)
Frame = +1
Query: 100 DHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 279
DHS + SR +SL PKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 27 DHSLKSWRSRAESLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 86
Query: 280 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 396
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 87 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 125
>ref|XP_001472787.1| PREDICTED: short coiled-coil protein-like [Mus musculus].
Length = 162
Score = 172 bits (437), Expect = 4e-43
Identities = 95/119 (79%), Positives = 101/119 (84%)
Frame = +1
Query: 40 QVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKTRL 219
+ +RP AS LPA T D S + L SR SL PKMMNADM+AVDAENQVELEEKT+L
Sbjct: 44 RATRPGASYPFRLLPALQTQDRSLKSLCSRAGSLLPKMMNADMNAVDAENQVELEEKTQL 103
Query: 220 INQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 396
INQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQT DTKSKR+
Sbjct: 104 INQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTIDTKSKRR 162
>ref|XP_003086376.1| PREDICTED: short coiled-coil protein-like [Mus musculus].
Length = 162
Score = 172 bits (437), Expect = 4e-43
Identities = 95/119 (79%), Positives = 101/119 (84%)
Frame = +1
Query: 40 QVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKTRL 219
+ +RP AS LPA T D S + L SR SL PKMMNADM+AVDAENQVELEEKT+L
Sbjct: 44 RATRPGASYPFRLLPALQTQDRSLKSLCSRAGSLLPKMMNADMNAVDAENQVELEEKTQL 103
Query: 220 INQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 396
INQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQT DTKSKR+
Sbjct: 104 INQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTIDTKSKRR 162
>ref|NP_062682.1| short coiled-coil protein isoform b [Mus musculus].
Length = 82
Score = 157 bits (398), Expect = 1e-38
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +1
Query: 151 MMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQ 330
MMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQ
Sbjct: 1 MMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQ 60
Query: 331 YIENLMSASSVFQTTDTKSKRK 396
YIENLMSASSVFQTTDTKSKRK
Sbjct: 61 YIENLMSASSVFQTTDTKSKRK 82
>ref|XP_003085251.1| PREDICTED: short coiled-coil protein-like [Mus musculus].
Length = 82
Score = 155 bits (392), Expect = 6e-38
Identities = 81/82 (98%), Positives = 81/82 (98%)
Frame = +1
Query: 151 MMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQ 330
MMNADMDAVDAENQVELEEKTRLINQVLEL HTLEDLSARVDAVKEENLKLKSENQVLGQ
Sbjct: 1 MMNADMDAVDAENQVELEEKTRLINQVLELPHTLEDLSARVDAVKEENLKLKSENQVLGQ 60
Query: 331 YIENLMSASSVFQTTDTKSKRK 396
YIENLMSASSVFQTTDTKSKRK
Sbjct: 61 YIENLMSASSVFQTTDTKSKRK 82
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,553,920
Number of extensions: 732976
Number of successful extensions: 2354
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2350
Number of HSP's successfully gapped: 5
Length of query: 417
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 313
Effective length of database: 12,493,815
Effective search space: 3910564095
Effective search space used: 3910564095
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013863
(1253 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001146956.1| short coiled-coil protein isoform 1 [Homo sa... 219 5e-57
Alignment gi|NP_001147135.1| short coiled-coil protein isoform 2 [Homo sa... 213 4e-55
Alignment gi|NP_115936.2| short coiled-coil protein isoform 4 [Homo sapie... 187 2e-47
Alignment gi|NP_001147057.1| short coiled-coil protein isoform 4 [Homo sa... 187 2e-47
Alignment gi|NP_001146918.1| short coiled-coil protein isoform 4 [Homo sa... 187 2e-47
Alignment gi|NP_001147107.1| short coiled-coil protein isoform 5 [Homo sa... 181 2e-45
Alignment gi|NP_001147024.1| short coiled-coil protein isoform 3 [Homo sa... 152 8e-37
Alignment gi|NP_001147162.1| short coiled-coil protein isoform 6 [Homo sa... 120 3e-27
>ref|NP_001146956.1| short coiled-coil protein isoform 1 [Homo sapiens].
Length = 159
Score = 219 bits (557), Expect = 5e-57
Identities = 115/131 (87%), Positives = 117/131 (89%)
Frame = +1
Query: 4 GQRGRGCECQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDA 183
G+ GR C Q QVSRPE S+ SL LPAP DHSSRILY RPKSL PKMMNADMDAVDA
Sbjct: 29 GRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMMNADMDAVDA 88
Query: 184 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 363
ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
Sbjct: 89 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 148
Query: 364 FQTTDTKSKRK 396
FQTTDTKSKRK
Sbjct: 149 FQTTDTKSKRK 159
>ref|NP_001147135.1| short coiled-coil protein isoform 2 [Homo sapiens].
Length = 158
Score = 213 bits (541), Expect = 4e-55
Identities = 114/131 (87%), Positives = 116/131 (88%)
Frame = +1
Query: 4 GQRGRGCECQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDA 183
G+ GR C Q QVSRPE S+ SL LPAP DHSSRILY RPKSL PKMMNADMD VDA
Sbjct: 29 GRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMMNADMD-VDA 87
Query: 184 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 363
ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
Sbjct: 88 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 147
Query: 364 FQTTDTKSKRK 396
FQTTDTKSKRK
Sbjct: 148 FQTTDTKSKRK 158
>ref|NP_115936.2| short coiled-coil protein isoform 4 [Homo sapiens].
Length = 122
Score = 187 bits (474), Expect = 2e-47
Identities = 97/99 (97%), Positives = 97/99 (97%)
Frame = +1
Query: 100 DHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 279
DHSSRILY RPKSL PKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 280 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 396
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>ref|NP_001147057.1| short coiled-coil protein isoform 4 [Homo sapiens].
Length = 122
Score = 187 bits (474), Expect = 2e-47
Identities = 97/99 (97%), Positives = 97/99 (97%)
Frame = +1
Query: 100 DHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 279
DHSSRILY RPKSL PKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 280 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 396
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>ref|NP_001146918.1| short coiled-coil protein isoform 4 [Homo sapiens].
Length = 122
Score = 187 bits (474), Expect = 2e-47
Identities = 97/99 (97%), Positives = 97/99 (97%)
Frame = +1
Query: 100 DHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 279
DHSSRILY RPKSL PKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 280 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 396
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>ref|NP_001147107.1| short coiled-coil protein isoform 5 [Homo sapiens].
Length = 121
Score = 181 bits (458), Expect = 2e-45
Identities = 96/99 (96%), Positives = 96/99 (96%)
Frame = +1
Query: 100 DHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 279
DHSSRILY RPKSL PKMMNADMD VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMD-VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 82
Query: 280 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 396
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 83 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 121
>ref|NP_001147024.1| short coiled-coil protein isoform 3 [Homo sapiens].
Length = 131
Score = 152 bits (383), Expect = 8e-37
Identities = 87/131 (66%), Positives = 89/131 (67%)
Frame = +1
Query: 4 GQRGRGCECQSTQVSRPEASSRSLPLPAPLTADHSSRILYSRPKSLSPKMMNADMDAVDA 183
G+ GR C Q QVSRPE S+ SL LPAP DHSSRILY RPKSL PKMMNADMD
Sbjct: 29 GRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMMNADMD---- 84
Query: 184 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 363
DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
Sbjct: 85 ------------------------DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV 120
Query: 364 FQTTDTKSKRK 396
FQTTDTKSKRK
Sbjct: 121 FQTTDTKSKRK 131
>ref|NP_001147162.1| short coiled-coil protein isoform 6 [Homo sapiens].
Length = 94
Score = 120 bits (300), Expect = 3e-27
Identities = 69/99 (69%), Positives = 69/99 (69%)
Frame = +1
Query: 100 DHSSRILYSRPKSLSPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 279
DHSSRILY RPKSL PKMMNADMD DLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMD----------------------------DLSARVDA 55
Query: 280 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 396
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 56 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 94
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,781,354
Number of extensions: 848298
Number of successful extensions: 2917
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2907
Number of HSP's successfully gapped: 8
Length of query: 417
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,835,944
Effective search space: 4628814528
Effective search space used: 4628814528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013863
(1253 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1873 0.0
Sscrofa_Chr01 228 6e-57
>Sscrofa_Chr08
|| Length = 148491826
Score = 1873 bits (945), Expect = 0.0
Identities = 984/999 (98%), Gaps = 1/999 (0%)
Strand = Plus / Minus
Query: 255 agatctctctgcaagggtagatgcggttaaggaagaaaatctgaagctaaaatcagaaaa 314
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92174096 agatctctctgcaagagtagatgcggttaaggaagaaaatctgaagctaaaatcagaaaa 92174037
Query: 315 tcaagtacttggacaatacatagaaaacctcatgtcagcttctagtgtttttcaaacgac 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92174036 tcaagtacttggacaatacatagaaaacctcatgtcagcttctagtgtttttcaaacgac 92173977
Query: 375 tgacacaaaaagcaaaagaaagtaagggattgatatcccttatgtcttatggaattgctg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173976 tgacacaaaaagcaaaagaaagtaagggattgatatcccttatgtcttatggaattgctg 92173917
Query: 435 ctgatcttttttctttaaaacttagattccaaaagttataatagttttgtttgtggcttc 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173916 ctgatcttttttctttaaaacttagattccaaaagttataatagttttgtttgtggcttc 92173857
Query: 495 actgagtatttatgaagataatgtcagatctaggcaaaattaagaacctaacagaagact 554
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 92173856 actgagtatttatgaagataatgtcagatctaggcaaaattaagatcctaacagaagact 92173797
Query: 555 tccatgagtttgtgtattatgttagtctatgaaaatgtgcaaatgtattgtagagacttt 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173796 tccatgagtttgtgtattatgttagtctatgaaaatgtgcaaatgtattgtagagacttt 92173737
Query: 615 ataattagaattgcatatatttatgaaacttgaaaatgaatgttttatcaaatttgcttt 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173736 ataattagaattgcatatatttatgaaacttgaaaatgaatgttttatcaaatttgcttt 92173677
Query: 675 tataggcttagcactgtcttttattataggcatagttaaagatataagaaaataaccacc 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173676 tataggcttagcactgtcttttattataggcatagttaaagatataagaaaataaccacc 92173617
Query: 735 acgttgtgagaaagtgaccaaaatcatgtactgaatgcacagctttctataccctgtcca 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173616 acgttgtgagaaagtgaccaaaatcatgtactgaatgcacagctttctataccctgtcca 92173557
Query: 795 ccattgtgtgcctcttttccatttgctttcttcttgttttccttcccctaaagaaaaaac 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173556 ccattgtgtgcctcttttccatttgctttcttcttgttttccttcccctaaagaaaaaac 92173497
Query: 855 tgctttcacatttataaaaagtaattccaagtgttaatcatctaggagagtaacctgaac 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173496 tgctttcacatttataaaaagtaattccaagtgttaatcatctaggagagtaacctgaac 92173437
Query: 915 tctcaactgttgaaacttaaccaaaataagacactttctccattagggcttatttgttat 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173436 tctcaactgttgaaacttaaccaaaataagacactttctccattagggcttatttgttat 92173377
Query: 975 atttagtaataagatagaatatttggtttctctttaatcaattgaaaattgaggctataa 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173376 atttagtaataagatagaatatttggtttctctttaatcaattgaaaattgaggctataa 92173317
Query: 1035 aaatgaagatttttccttgaaactgaaatgtcaaattggggaagatgtgttgttaaaann 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173316 aaatgaagatttttccttgaaactgaaatgtcaaattggggaagatgtgttgttaaaa-t 92173258
Query: 1095 nnnnnnnngcacaaaataacccacttggttatctgnaaagatgagctaaactgtgtttct 1154
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 92173257 ttttttttgcacaaaataacccacttggttatctgaaaagatgagctaaactgtgtttct 92173198
Query: 1155 gaagtagaaatttttgaggagaaatagaaatagggtgggaaaagtacttgctaagtacct 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92173197 gaagtagaaatttttgaggagaaatagaaatagggtgggaaaagtacttgctaagtacct 92173138
Query: 1215 tcttaaccaacttcaaagttttttactccagatttgtgt 1253
||||||||||||||||| ||||||||||||||||||||
Sbjct: 92173137 tcttaaccaacttcaaatgtttttactccagatttgtgt 92173099
Score = 188 bits (95), Expect = 5e-45
Identities = 98/99 (98%)
Strand = Plus / Minus
Query: 2 gtgggcagagagggcggggctgcgagtgccagtcgacccaagtatcccggcctgaggcgt 61
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 92182405 gtgggcagagagggcggggctgctagtgccagtcgacccaagtatcccggcctgaggcgt 92182346
Query: 62 cctcccgatccctccccctgccggcgcctctaacggcag 100
|||||||||||||||||||||||||||||||||||||||
Sbjct: 92182345 cctcccgatccctccccctgccggcgcctctaacggcag 92182307
Score = 161 bits (81), Expect = 1e-36
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 172 gcagttgatgctgaaaatcaggtggaactggaggaaaaaacacgacttattaatcaagtg 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 92175522 gcagttgatgctgaaaatcaggtggaactggaggaaaaaacacgacttattaatcaggtg 92175463
Query: 232 ttggaactccaacacacacttgaag 256
|||||||||||||||||||||||||
Sbjct: 92175462 ttggaactccaacacacacttgaag 92175438
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 97 gcagaccattcatcaagaattttgtattcaaggcccaaaagtttgtcaccgaagatgatg 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92175958 gcagaccattcatcaagaattttgtattcaaggcccaaaagtttgtcaccgaagatgatg 92175899
Query: 157 aatgctgacatggatg 172
||||||||||||||||
Sbjct: 92175898 aatgctgacatggatg 92175883
>Sscrofa_Chr01
|| Length = 315321322
Score = 228 bits (115), Expect = 6e-57
Identities = 209/239 (87%), Gaps = 6/239 (2%)
Strand = Plus / Plus
Query: 111 aagaattttgtattcaaggcccaaaagtttgtcaccgaagatgatgaatgctgacatgga 170
||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 302950417 aagaattttgtatccaaggcccaaaagtttgttaccgaagacaatgaatgctgacatg-- 302950474
Query: 171 tgcagttgatgctgaaaatcaggtggaactggaggaaaaaacacgacttattaatcaagt 230
| ||||||| |||||| ||||||||| |||||||||||||| |||||||| |||||||
Sbjct: 302950475 --cggttgatgttgaaaagcaggtggaagtggaggaaaaaacaggacttatttatcaagt 302950532
Query: 231 gttggaactccaacacacacttgaagatctctctgcaagggtagatgcggttaaggaaga 290
|||||||||||||||| |||| |||||||| |||||||| ||||| | ||||||||||||
Sbjct: 302950533 gttggaactccaacacgcactggaagatctatctgcaagagtagaggaggttaaggaaga 302950592
Query: 291 aaatctgaagcta--aaatcagaaaatcaagtacttggacaatacatagaaaacctcat 347
||||| ||||||| ||||||||||| |||| ||||| || | ||||||||||||||
Sbjct: 302950593 aaatccgaagctaagaaatcagaaaaccaaggtcttgggtaagatatagaaaacctcat 302950651
Score = 145 bits (73), Expect = 7e-32
Identities = 124/141 (87%)
Strand = Plus / Plus
Query: 461 ttccaaaagttataatagttttgtttgtggcttcactgagtatttatgaagataatgtca 520
|||||||| | ||| || ||||| ||||||| |||||||||||||||||||| | |||||
Sbjct: 302951387 ttccaaaaatgatagtacttttgattgtggcctcactgagtatttatgaagacagtgtca 302951446
Query: 521 gatctaggcaaaattaagaacctaacagaagacttccatgagtttgtgtattatgttagt 580
|||||||||||||||| || ||||||||||||| ||| || |||||||||| ||| |||
Sbjct: 302951447 gatctaggcaaaattaggagcctaacagaagacgtccgtgtgtttgtgtatcatgctagc 302951506
Query: 581 ctatgaaaatgtgcaaatgta 601
|| ||||||||||||||||||
Sbjct: 302951507 ctctgaaaatgtgcaaatgta 302951527
Score = 141 bits (71), Expect = 1e-30
Identities = 115/129 (89%), Gaps = 3/129 (2%)
Strand = Plus / Plus
Query: 329 aatacatagaaaacctcatgtcagcttctagtgtttttcaaacgactgacacaaaaagca 388
|||| |||||||||||||||||||||||||||||||| ||||| || || |||| |||
Sbjct: 302950695 aatatatagaaaacctcatgtcagcttctagtgttttccaaac---tgccagaaaatgca 302950751
Query: 389 aaagaaagtaagggattgatatcccttatgtcttatggaattgctgctgatcttttttct 448
||||||| |||| |||||||| ||||||||||||||||||||||||||| | ||||| ||
Sbjct: 302950752 aaagaaaataagagattgataccccttatgtcttatggaattgctgctggtatttttgct 302950811
Query: 449 ttaaaactt 457
|||||||||
Sbjct: 302950812 ttaaaactt 302950820
Score = 79.8 bits (40), Expect = 3e-12
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 998 tggtttctctttaatcaattgaaaattgaggctataaaaatgaagatttttccttgaaac 1057
||||||||||||||||||||||||| |||||| |||||||| ||||||||| | |||||
Sbjct: 302952635 tggtttctctttaatcaattgaaaacagaggctgtaaaaatgtagatttttcttggaaac 302952694
Query: 1058 tgaa 1061
||||
Sbjct: 302952695 tgaa 302952698
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,275,461
Number of extensions: 592
Number of successful extensions: 592
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 9
Length of query: 1253
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1232
Effective length of database: 2,808,413,156
Effective search space: 3459965008192
Effective search space used: 3459965008192
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)