Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013876
(1064 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015671.1| mitochondrial chaperone BCS1 [Bos taurus]. 536 e-152
>ref|NP_001015671.1| mitochondrial chaperone BCS1 [Bos taurus].
Length = 419
Score = 536 bits (1381), Expect = e-152
Identities = 265/308 (86%), Positives = 270/308 (87%)
Frame = +1
Query: 139 MPFSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 318
MP SDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY
Sbjct: 1 MPLSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 60
Query: 319 AWLLSWLTRHSARTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 498
AWLLSWLTRHS RTQHLSVET+YLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE
Sbjct: 61 AWLLSWLTRHSTRTQHLSVETTYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 120
Query: 499 MQMIDLQTGTPWESVTFTALGTDRKIFFNIXXXXXXXXXXXXXGKTVMYTAVGSEWRPFG 678
MQMIDLQTGTPWESVTFTALGTDRK+FFNI GKTVMYTAVGSEWRPFG
Sbjct: 121 MQMIDLQTGTPWESVTFTALGTDRKVFFNILEEARELALQQEEGKTVMYTAVGSEWRPFG 180
Query: 679 YPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 858
YPRRRRPLNSVVLEQG+ +RIVRDIREFIDNPKWY DRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLNSVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 859 TALAGELQHXXXXXXXXXXXXXXXXXNHLLGVAPQQSLVLPGDVDAAFLSRDLAAENPVK 1038
TALAGELQH NHLL VAPQQSLVL DVDAAFLSRDLAAENP+K
Sbjct: 241 TALAGELQHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAENPIK 300
Query: 1039 YQVLGRLT 1062
YQ LGRLT
Sbjct: 301 YQGLGRLT 308
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,698,122
Number of extensions: 1199063
Number of successful extensions: 4408
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4401
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013876
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013876
(1064 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536070.1| PREDICTED: similar to Mitochondrial chaperone B... 536 e-152
Alignment gi|XP_863420.1| PREDICTED: similar to Mitochondrial chaperone B... 516 e-146
Alignment gi|XP_863403.1| PREDICTED: similar to Mitochondrial chaperone B... 515 e-146
Alignment gi|XP_863378.1| PREDICTED: similar to Mitochondrial chaperone B... 232 5e-61
Alignment gi|XP_863351.1| PREDICTED: similar to Mitochondrial chaperone B... 60 4e-09
>ref|XP_536070.1| PREDICTED: similar to Mitochondrial chaperone BCS1 (BCS1-like
protein) (H-BCS1) isoform 1 [Canis familiaris].
Length = 419
Score = 536 bits (1381), Expect = e-152
Identities = 265/308 (86%), Positives = 270/308 (87%)
Frame = +1
Query: 139 MPFSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 318
MP SDF+LALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY
Sbjct: 1 MPLSDFILALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 60
Query: 319 AWLLSWLTRHSARTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 498
AWLLSWLTRHS RTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE
Sbjct: 61 AWLLSWLTRHSTRTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 120
Query: 499 MQMIDLQTGTPWESVTFTALGTDRKIFFNIXXXXXXXXXXXXXGKTVMYTAVGSEWRPFG 678
MQMIDLQTGTPWESVTFTALGTDRK+FFNI GKTVMYTA+GSEWRPFG
Sbjct: 121 MQMIDLQTGTPWESVTFTALGTDRKVFFNILEEARELALQQEEGKTVMYTAMGSEWRPFG 180
Query: 679 YPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 858
YPRRRRPL SVVL QGLADRIVRD+REFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLTSVVLGQGLADRIVRDVREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 859 TALAGELQHXXXXXXXXXXXXXXXXXNHLLGVAPQQSLVLPGDVDAAFLSRDLAAENPVK 1038
TALAGEL+H NHLL VAPQQSLVL DVDAAFLSRDLAAENPVK
Sbjct: 241 TALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAENPVK 300
Query: 1039 YQVLGRLT 1062
YQ LGRLT
Sbjct: 301 YQGLGRLT 308
>ref|XP_863420.1| PREDICTED: similar to Mitochondrial chaperone BCS1 (BCS1-like
protein) (H-BCS1) isoform 5 [Canis familiaris].
Length = 411
Score = 516 bits (1329), Expect = e-146
Identities = 255/304 (83%), Positives = 263/304 (86%)
Frame = +1
Query: 139 MPFSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 318
MP SDF+LALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY
Sbjct: 1 MPLSDFILALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 60
Query: 319 AWLLSWLTRHSARTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 498
AWLLSWLTRHS RTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE
Sbjct: 61 AWLLSWLTRHSTRTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 120
Query: 499 MQMIDLQTGTPWESVTFTALGTDRKIFFNIXXXXXXXXXXXXXGKTVMYTAVGSEWRPFG 678
MQMIDLQTGTPWESVTFTALGTDRK+FFNI GKTVMYTA+GSEWRPFG
Sbjct: 121 MQMIDLQTGTPWESVTFTALGTDRKVFFNILEEARELALQQEEGKTVMYTAMGSEWRPFG 180
Query: 679 YPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 858
YPRRRRPL SVVL QGLADRIVRD+REFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLTSVVLGQGLADRIVRDVREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 859 TALAGELQHXXXXXXXXXXXXXXXXXNHLLGVAPQQSLVLPGDVDAAFLSRDLAAENPVK 1038
TALAGEL+H NHLL VAPQQSLVL DVDAAFLSRDLAAE+ +
Sbjct: 241 TALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAESRLT 300
Query: 1039 YQVL 1050
+ L
Sbjct: 301 FSGL 304
>ref|XP_863403.1| PREDICTED: similar to Mitochondrial chaperone BCS1 (BCS1-like
protein) (H-BCS1) isoform 4 [Canis familiaris].
Length = 334
Score = 515 bits (1327), Expect = e-146
Identities = 254/297 (85%), Positives = 260/297 (87%)
Frame = +1
Query: 139 MPFSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 318
MP SDF+LALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY
Sbjct: 1 MPLSDFILALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 60
Query: 319 AWLLSWLTRHSARTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 498
AWLLSWLTRHS RTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE
Sbjct: 61 AWLLSWLTRHSTRTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 120
Query: 499 MQMIDLQTGTPWESVTFTALGTDRKIFFNIXXXXXXXXXXXXXGKTVMYTAVGSEWRPFG 678
MQMIDLQTGTPWESVTFTALGTDRK+FFNI GKTVMYTA+GSEWRPFG
Sbjct: 121 MQMIDLQTGTPWESVTFTALGTDRKVFFNILEEARELALQQEEGKTVMYTAMGSEWRPFG 180
Query: 679 YPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 858
YPRRRRPL SVVL QGLADRIVRD+REFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLTSVVLGQGLADRIVRDVREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 859 TALAGELQHXXXXXXXXXXXXXXXXXNHLLGVAPQQSLVLPGDVDAAFLSRDLAAEN 1029
TALAGEL+H NHLL VAPQQSLVL DVDAAFLSRDLAAE+
Sbjct: 241 TALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAES 297
>ref|XP_863378.1| PREDICTED: similar to Mitochondrial chaperone BCS1 (BCS1-like
protein) (H-BCS1) isoform 3 [Canis familiaris].
Length = 252
Score = 232 bits (591), Expect = 5e-61
Identities = 115/141 (81%), Positives = 118/141 (83%)
Frame = +1
Query: 640 MYTAVGSEWRPFGYPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYL 819
MYTA+GSEWRPFGYPRRRRPL SVVL QGLADRIVRD+REFIDNPKWYTDRGIPYRRGYL
Sbjct: 1 MYTAMGSEWRPFGYPRRRRPLTSVVLGQGLADRIVRDVREFIDNPKWYTDRGIPYRRGYL 60
Query: 820 LYGPPGCGKSSFITALAGELQHXXXXXXXXXXXXXXXXXNHLLGVAPQQSLVLPGDVDAA 999
LYGPPGCGKSSFITALAGEL+H NHLL VAPQQSLVL DVDAA
Sbjct: 61 LYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAA 120
Query: 1000 FLSRDLAAENPVKYQVLGRLT 1062
FLSRDLAAENPVKYQ LGRLT
Sbjct: 121 FLSRDLAAENPVKYQGLGRLT 141
>ref|XP_863351.1| PREDICTED: similar to Mitochondrial chaperone BCS1 (BCS1-like
protein) (H-BCS1) isoform 2 [Canis familiaris].
Length = 159
Score = 60.1 bits (144), Expect = 4e-09
Identities = 29/35 (82%), Positives = 30/35 (85%)
Frame = +2
Query: 752 SGNSSITPSGTLTEAFPTDAATCFTAPLVAERAVL 856
SGNSSITPSGTLTEAFPTD ATCF LV E+AVL
Sbjct: 2 SGNSSITPSGTLTEAFPTDVATCFMGLLVVEKAVL 36
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,483,360
Number of extensions: 1235310
Number of successful extensions: 4311
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4297
Number of HSP's successfully gapped: 5
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013876
(1064 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230605.1| BCS1-like [Sus scrofa]. 548 e-156
>ref|NP_001230605.1| BCS1-like [Sus scrofa].
Length = 419
Score = 548 bits (1413), Expect = e-156
Identities = 274/308 (88%), Positives = 274/308 (88%)
Frame = +1
Query: 139 MPFSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 318
MPFSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY
Sbjct: 1 MPFSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 60
Query: 319 AWLLSWLTRHSARTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 498
AWLLSWLTRHSARTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE
Sbjct: 61 AWLLSWLTRHSARTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 120
Query: 499 MQMIDLQTGTPWESVTFTALGTDRKIFFNIXXXXXXXXXXXXXGKTVMYTAVGSEWRPFG 678
MQMIDLQTGTPWESVTFTALGTDRKIFFNI GKTVMYTAVGSEWRPFG
Sbjct: 121 MQMIDLQTGTPWESVTFTALGTDRKIFFNILEEARELALQQEEGKTVMYTAVGSEWRPFG 180
Query: 679 YPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 858
YPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 859 TALAGELQHXXXXXXXXXXXXXXXXXNHLLGVAPQQSLVLPGDVDAAFLSRDLAAENPVK 1038
TALAGELQH NHLL VAPQQSLVL DVDAAFLSRDLAAENPVK
Sbjct: 241 TALAGELQHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAENPVK 300
Query: 1039 YQVLGRLT 1062
YQ LGRLT
Sbjct: 301 YQGLGRLT 308
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,570,558
Number of extensions: 775282
Number of successful extensions: 2941
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2932
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013876
(1064 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080060.1| mitochondrial chaperone BCS1 [Mus musculus]. 530 e-151
>ref|NP_080060.1| mitochondrial chaperone BCS1 [Mus musculus].
Length = 418
Score = 530 bits (1365), Expect = e-151
Identities = 259/308 (84%), Positives = 270/308 (87%)
Frame = +1
Query: 139 MPFSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 318
MPFSDFVLALKDNPYFGAGFGLVGVGTALA+ARKGAQLGLVAFRRHYMITLEVPARDRSY
Sbjct: 1 MPFSDFVLALKDNPYFGAGFGLVGVGTALAMARKGAQLGLVAFRRHYMITLEVPARDRSY 60
Query: 319 AWLLSWLTRHSARTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 498
AWLLSWLTRHS RTQHLSVETSYLQHESGRISTKFEF+PSPGNHFIWYQGKWIRVER+R+
Sbjct: 61 AWLLSWLTRHSTRTQHLSVETSYLQHESGRISTKFEFIPSPGNHFIWYQGKWIRVERNRD 120
Query: 499 MQMIDLQTGTPWESVTFTALGTDRKIFFNIXXXXXXXXXXXXXGKTVMYTAVGSEWRPFG 678
MQM+DLQTGTPWESVTFTALGTDRK+FFNI GKTVMYTAVGSEWR FG
Sbjct: 121 MQMVDLQTGTPWESVTFTALGTDRKVFFNILEEARALALQQEEGKTVMYTAVGSEWRTFG 180
Query: 679 YPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 858
YPRRRRPL+SVVL+QGLADRIV+DIREFIDNPKWY DRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLDSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 859 TALAGELQHXXXXXXXXXXXXXXXXXNHLLGVAPQQSLVLPGDVDAAFLSRDLAAENPVK 1038
TALAGEL+H NHLL VAPQQSLVL DVDAAFLSRDLA ENP+K
Sbjct: 241 TALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPIK 300
Query: 1039 YQVLGRLT 1062
YQ LGRLT
Sbjct: 301 YQGLGRLT 308
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,747,588
Number of extensions: 997458
Number of successful extensions: 3286
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3275
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013876
(1064 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073335.1| mitochondrial chaperone BCS1 [Homo sapiens]. 535 e-152
Alignment gi|NP_004319.1| mitochondrial chaperone BCS1 [Homo sapiens]. 535 e-152
>ref|NP_001073335.1| mitochondrial chaperone BCS1 [Homo sapiens].
Length = 419
Score = 535 bits (1378), Expect = e-152
Identities = 263/308 (85%), Positives = 270/308 (87%)
Frame = +1
Query: 139 MPFSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 318
MP SDF+LALKDNPYFGAGFGLVGVGTALALARKG QLGLVAFRRHYMITLEVPARDRSY
Sbjct: 1 MPLSDFILALKDNPYFGAGFGLVGVGTALALARKGVQLGLVAFRRHYMITLEVPARDRSY 60
Query: 319 AWLLSWLTRHSARTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 498
AWLLSWLTRHS RTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWY+GKWIRVERSRE
Sbjct: 61 AWLLSWLTRHSTRTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYRGKWIRVERSRE 120
Query: 499 MQMIDLQTGTPWESVTFTALGTDRKIFFNIXXXXXXXXXXXXXGKTVMYTAVGSEWRPFG 678
MQMIDLQTGTPWESVTFTALGTDRK+FFNI GKTVMYTAVGSEWRPFG
Sbjct: 121 MQMIDLQTGTPWESVTFTALGTDRKVFFNILEEARELALQQEEGKTVMYTAVGSEWRPFG 180
Query: 679 YPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 858
YPRRRRPLNSVVL+QGLADRIVRD++EFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 859 TALAGELQHXXXXXXXXXXXXXXXXXNHLLGVAPQQSLVLPGDVDAAFLSRDLAAENPVK 1038
TALAGEL+H NHLL VAPQQSLVL DVDAAFLSRDLA ENPVK
Sbjct: 241 TALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVK 300
Query: 1039 YQVLGRLT 1062
YQ LGRLT
Sbjct: 301 YQGLGRLT 308
>ref|NP_004319.1| mitochondrial chaperone BCS1 [Homo sapiens].
Length = 419
Score = 535 bits (1378), Expect = e-152
Identities = 263/308 (85%), Positives = 270/308 (87%)
Frame = +1
Query: 139 MPFSDFVLALKDNPYFGAGFGLVGVGTALALARKGAQLGLVAFRRHYMITLEVPARDRSY 318
MP SDF+LALKDNPYFGAGFGLVGVGTALALARKG QLGLVAFRRHYMITLEVPARDRSY
Sbjct: 1 MPLSDFILALKDNPYFGAGFGLVGVGTALALARKGVQLGLVAFRRHYMITLEVPARDRSY 60
Query: 319 AWLLSWLTRHSARTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYQGKWIRVERSRE 498
AWLLSWLTRHS RTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWY+GKWIRVERSRE
Sbjct: 61 AWLLSWLTRHSTRTQHLSVETSYLQHESGRISTKFEFVPSPGNHFIWYRGKWIRVERSRE 120
Query: 499 MQMIDLQTGTPWESVTFTALGTDRKIFFNIXXXXXXXXXXXXXGKTVMYTAVGSEWRPFG 678
MQMIDLQTGTPWESVTFTALGTDRK+FFNI GKTVMYTAVGSEWRPFG
Sbjct: 121 MQMIDLQTGTPWESVTFTALGTDRKVFFNILEEARELALQQEEGKTVMYTAVGSEWRPFG 180
Query: 679 YPRRRRPLNSVVLEQGLADRIVRDIREFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 858
YPRRRRPLNSVVL+QGLADRIVRD++EFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI
Sbjct: 181 YPRRRRPLNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFI 240
Query: 859 TALAGELQHXXXXXXXXXXXXXXXXXNHLLGVAPQQSLVLPGDVDAAFLSRDLAAENPVK 1038
TALAGEL+H NHLL VAPQQSLVL DVDAAFLSRDLA ENPVK
Sbjct: 241 TALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVK 300
Query: 1039 YQVLGRLT 1062
YQ LGRLT
Sbjct: 301 YQGLGRLT 308
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,635,626
Number of extensions: 1207778
Number of successful extensions: 4424
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4417
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013876
(1064 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118457.1| Sus scrofa unplaced genomic scaffold ChrUScaf441 728 0.0
Sscrofa_Chr15 100 3e-18
>gb|JH118457.1| Sus scrofa unplaced genomic scaffold ChrUScaf441
Length = 88551
Score = 728 bits (367), Expect = 0.0
Identities = 373/375 (99%)
Strand = Plus / Plus
Query: 87 caggtcttgaaaatgcctcggggcttgtaaggttcagtgttttcctttcaagatgccctt 146
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 39002 caggtcttgaaaatgcctcagggcttgtaaggttcagtgttttcctttcaagatgccctt 39061
Query: 147 ctcagactttgttctggccctgaaggacaacccctactttggggctggatttgggctggt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39062 ctcagactttgttctggccctgaaggacaacccctactttggggctggatttgggctggt 39121
Query: 207 gggtgtgggcacagccctggccttggcccggaagggcgcccagctgggcctggtggcatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39122 gggtgtgggcacagccctggccttggcccggaagggcgcccagctgggcctggtggcatt 39181
Query: 267 ccggcgccattatatgatcacactggaagtccctgctcgagacaggagctacgcctggtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39182 ccggcgccattatatgatcacactggaagtccctgctcgagacaggagctacgcctggtt 39241
Query: 327 gcttagctggctcacccgccacagtgcccgcactcagcacctcagtgtcgagacttcata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 39242 gcttagctggctcacccgccacagtgcccgcactcagcacctcagtgtcgagacttcgta 39301
Query: 387 ccttcagcacgagagtggtcgcatctccactaagtttgaatttgtccctagccctggaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39302 ccttcagcacgagagtggtcgcatctccactaagtttgaatttgtccctagccctggaaa 39361
Query: 447 ccactttatctggta 461
|||||||||||||||
Sbjct: 39362 ccactttatctggta 39376
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 597 agctcgagaactagccttgcagcaagaggaagggaagacagtgatgtacacagctgtggg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39818 agctcgagaactagccttgcagcaagaggaagggaagacagtgatgtacacagctgtggg 39877
Query: 657 ctctgaatggcgccccttcggctatccgcgccgccggcggccactgaattctgtggttct 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39878 ctctgaatggcgccccttcggctatccgcgccgccggcggccactgaattctgtggttct 39937
Query: 717 agaacagggtctggctgaccgaattgtcagagacatccgggaattcatcgataaccccaa 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39938 agaacagggtctggctgaccgaattgtcagagacatccgggaattcatcgataaccccaa 39997
Query: 777 gtggtacactgacagagg 794
||||||||||||||||||
Sbjct: 39998 gtggtacactgacagagg 40015
Score = 272 bits (137), Expect = 4e-70
Identities = 140/141 (99%)
Strand = Plus / Plus
Query: 458 ggtaccaggggaaatggatccgggtggaaaggagccgagagatgcagatgatagacctgc 517
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 39474 ggtaccaggggaaatggatccgggtggaacggagccgagagatgcagatgatagacctgc 39533
Query: 518 agacggggactccttgggagtctgttaccttcacggctctgggcactgaccgaaagattt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39534 agacggggactccttgggagtctgttaccttcacggctctgggcactgaccgaaagattt 39593
Query: 578 tcttcaacatcctggaagaag 598
|||||||||||||||||||||
Sbjct: 39594 tcttcaacatcctggaagaag 39614
Score = 262 bits (132), Expect = 4e-67
Identities = 166/172 (96%), Gaps = 4/172 (2%)
Strand = Plus / Plus
Query: 858 cacagccctggctggggagctgcagcacagcatctgcctgctgagtctcacagactccag 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40935 cacagccctggctggggagctgcagcacagcatctgcctgctgagtctcacagactccag 40994
Query: 918 cctctctcgatgac-ggctcaaccacctgctgggcgtggccccgcagcagagcctggtgc 976
|||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 40995 cctctcg-gatgaccggctcaaccacctgctgagcgtggccccgcagcagagcctggtgc 41053
Query: 977 tccctgga-gatgtggatgctgcctttctcagccgggacctggctgcggaga 1027
| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41054 t-cctggaggatgtggatgctgcctttctcagccgggacctggctgcggaga 41104
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 792 aggcattccctacagacgcggctacctgctttacggcccccctggttgcggaaagagcag 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40544 aggcattccctacagacgcggctacctgctttacggcccccctggttgcggaaagagcag 40603
Query: 852 ttttat 857
||||||
Sbjct: 40604 ttttat 40609
>Sscrofa_Chr15
|| Length = 157681621
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 1 gagcgcggaggtgaaaccatcgagagggagggccagagagtcatggcggt 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133827391 gagcgcggaggtgaaaccatcgagagggagggccagagagtcatggcggt 133827440
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 48 ggtttaaggaatctccagaccgagacatctggtgggaaacaggt 91
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133828397 ggtttaaggaatctccagaccgagacatctggtgggaaacaggt 133828440
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,834,986
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 7
Length of query: 1064
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1043
Effective length of database: 2,808,413,156
Effective search space: 2929174921708
Effective search space used: 2929174921708
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)