Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013878
(1490 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532619.2| PREDICTED: similar to FLJ20859 protein isoform ... 366 e-101
>ref|XP_532619.2| PREDICTED: similar to FLJ20859 protein isoform 2 [Canis familiaris].
Length = 366
Score = 366 bits (939), Expect = e-101
Identities = 180/206 (87%), Positives = 190/206 (92%)
Frame = +3
Query: 417 EEKLHGDVLRALRRTTYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQP 596
EE+L VL+ LRRTTYHWQEL+YNE LSL+YMAARLDGGFAAVSRAFHEI+ R P+FQP
Sbjct: 27 EERLRQAVLQTLRRTTYHWQELTYNERLSLVYMAARLDGGFAAVSRAFHEIRTRVPKFQP 86
Query: 597 QTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGVF 776
QTLMDFGSGTGSVTWAAHS WGQSLREYMCVDSSAAMLDLAEKLL+GGS SG P+VPGVF
Sbjct: 87 QTLMDFGSGTGSVTWAAHSAWGQSLREYMCVDSSAAMLDLAEKLLRGGSASGEPHVPGVF 146
Query: 777 FRQFLPVSPKVQFDVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSLL 956
FRQFLPVSPKVQFDVVVSAFSLSELPSKADR + +QTLWRKT HFLILVENGTKAGH LL
Sbjct: 147 FRQFLPVSPKVQFDVVVSAFSLSELPSKADRTETIQTLWRKTGHFLILVENGTKAGHCLL 206
Query: 957 MDARDLVLNEKEKSPLDPRPGFVFAP 1034
MDARDLVL KEKSPLDPRPGFVFAP
Sbjct: 207 MDARDLVLKGKEKSPLDPRPGFVFAP 232
Score = 107 bits (267), Expect = 3e-23
Identities = 51/68 (75%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Frame = +2
Query: 1283 YLCSQCPHELQCPQLSAPKPLACSFSQAYHPIPFSWN-KKPKEEKFSMVILARGYPEEAS 1459
++ + CPHEL CPQL+A KPLACSFSQAYH IPFSWN KK KEEKFSMVILARG PEEA
Sbjct: 228 FVFAPCPHELPCPQLAASKPLACSFSQAYHCIPFSWNKKKQKEEKFSMVILARGRPEEAP 287
Query: 1460 RWPPYYSP 1483
RWP P
Sbjct: 288 RWPRLTQP 295
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,330,947
Number of extensions: 1777655
Number of successful extensions: 5778
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5771
Number of HSP's successfully gapped: 2
Length of query: 496
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 389
Effective length of database: 15,307,552
Effective search space: 5954637728
Effective search space used: 5954637728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013878
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013878
(1490 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033631.1| methyltransferase-like protein 17, mitochond... 552 e-157
>ref|NP_001033631.1| methyltransferase-like protein 17, mitochondrial precursor [Bos
taurus].
Length = 462
Score = 552 bits (1422), Expect = e-157
Identities = 286/353 (81%), Positives = 304/353 (86%)
Frame = +3
Query: 96 VAPRCRALAALVPGVSQVDNKSDFLGKKSHRRHPGILQLSRVRLPQALVDAATLLLLESS 275
+AP+ RALAALVPGVS VDNKSDFLGK+ HRRHPGILQLS VRLPQAL +A LLLL S+
Sbjct: 22 IAPQFRALAALVPGVSHVDNKSDFLGKRPHRRHPGILQLSCVRLPQALAEAGQLLLLGSA 81
Query: 276 MPNMEKQVQALTNYLWSRHLPVETEELQRRAVHLEKKFLENADSCQMEEKLHGDVLRALR 455
MPNMEKQVQALTNYLWSRHLPVE EELQRRAV LEKK LENADSCQ E K H ++L ALR
Sbjct: 82 MPNMEKQVQALTNYLWSRHLPVEPEELQRRAVLLEKKILENADSCQTE-KHHEEILHALR 140
Query: 456 RTTYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQPQTLMDFGSGTGSV 635
RTTYHWQELSY+EGLSL+YMAARLDGGFAAVSRAFHEIQAR PEFQPQTLMDFGSGTGSV
Sbjct: 141 RTTYHWQELSYSEGLSLVYMAARLDGGFAAVSRAFHEIQARLPEFQPQTLMDFGSGTGSV 200
Query: 636 TWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGVFFRQFLPVSPKVQF 815
TWAAHSTWGQSLREYMCVDSSAAML+LAEKLLKGGS SG+P VPGVFFRQFLPVSPKVQF
Sbjct: 201 TWAAHSTWGQSLREYMCVDSSAAMLELAEKLLKGGSGSGMPCVPGVFFRQFLPVSPKVQF 260
Query: 816 DVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSLLMDARDLVLNEKEK 995
DVVV+AFSLSELPSKADR D+VQTLWRKT HFL+L+ENGTKAGHSLLMDARDLVLN KEK
Sbjct: 261 DVVVAAFSLSELPSKADRTDVVQTLWRKTGHFLVLIENGTKAGHSLLMDARDLVLNGKEK 320
Query: 996 SPLDPRPGFVFAPVSITSTFPSMQRTELTCGQEKYEGKAKAPSTTLGHFPISF 1154
SPLDPRPGFVFAP EL C Q K A S + ++PI F
Sbjct: 321 SPLDPRPGFVFAPCP----------HELPCPQ-LTASKPLACSFSQAYYPIPF 362
Score = 114 bits (286), Expect = 2e-25
Identities = 50/67 (74%), Positives = 58/67 (86%)
Frame = +2
Query: 1283 YLCSQCPHELQCPQLSAPKPLACSFSQAYHPIPFSWNKKPKEEKFSMVILARGYPEEASR 1462
++ + CPHEL CPQL+A KPLACSFSQAY+PIPFSWNKKPKEEKFS+VILARG PE+A+R
Sbjct: 329 FVFAPCPHELPCPQLTASKPLACSFSQAYYPIPFSWNKKPKEEKFSLVILARGSPEKANR 388
Query: 1463 WPPYYSP 1483
WP P
Sbjct: 389 WPRITQP 395
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,921,027
Number of extensions: 1731837
Number of successful extensions: 5989
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5975
Number of HSP's successfully gapped: 2
Length of query: 496
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 390
Effective length of database: 14,174,046
Effective search space: 5527877940
Effective search space used: 5527877940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013878
(1490 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362043.1| PREDICTED: methyltransferase-like protein 17... 419 e-117
Alignment gi|XP_003362042.1| PREDICTED: methyltransferase-like protein 17... 419 e-117
>ref|XP_003362043.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like
isoform 2 [Sus scrofa].
Length = 334
Score = 419 bits (1076), Expect = e-117
Identities = 207/207 (100%), Positives = 207/207 (100%)
Frame = +3
Query: 414 MEEKLHGDVLRALRRTTYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQ 593
MEEKLHGDVLRALRRTTYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQ
Sbjct: 1 MEEKLHGDVLRALRRTTYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQ 60
Query: 594 PQTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGV 773
PQTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGV
Sbjct: 61 PQTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGV 120
Query: 774 FFRQFLPVSPKVQFDVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSL 953
FFRQFLPVSPKVQFDVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSL
Sbjct: 121 FFRQFLPVSPKVQFDVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSL 180
Query: 954 LMDARDLVLNEKEKSPLDPRPGFVFAP 1034
LMDARDLVLNEKEKSPLDPRPGFVFAP
Sbjct: 181 LMDARDLVLNEKEKSPLDPRPGFVFAP 207
Score = 130 bits (328), Expect = 1e-30
Identities = 58/67 (86%), Positives = 61/67 (91%)
Frame = +2
Query: 1283 YLCSQCPHELQCPQLSAPKPLACSFSQAYHPIPFSWNKKPKEEKFSMVILARGYPEEASR 1462
++ + CPHELQCPQLSAPKPLACSFSQAYHPIPFSWNKKPKEEKFSMVILARGYPEEASR
Sbjct: 203 FVFAPCPHELQCPQLSAPKPLACSFSQAYHPIPFSWNKKPKEEKFSMVILARGYPEEASR 262
Query: 1463 WPPYYSP 1483
WP P
Sbjct: 263 WPRITQP 269
>ref|XP_003362042.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like
isoform 1 [Sus scrofa].
Length = 334
Score = 419 bits (1076), Expect = e-117
Identities = 207/207 (100%), Positives = 207/207 (100%)
Frame = +3
Query: 414 MEEKLHGDVLRALRRTTYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQ 593
MEEKLHGDVLRALRRTTYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQ
Sbjct: 1 MEEKLHGDVLRALRRTTYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQ 60
Query: 594 PQTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGV 773
PQTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGV
Sbjct: 61 PQTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGV 120
Query: 774 FFRQFLPVSPKVQFDVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSL 953
FFRQFLPVSPKVQFDVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSL
Sbjct: 121 FFRQFLPVSPKVQFDVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSL 180
Query: 954 LMDARDLVLNEKEKSPLDPRPGFVFAP 1034
LMDARDLVLNEKEKSPLDPRPGFVFAP
Sbjct: 181 LMDARDLVLNEKEKSPLDPRPGFVFAP 207
Score = 130 bits (328), Expect = 1e-30
Identities = 58/67 (86%), Positives = 61/67 (91%)
Frame = +2
Query: 1283 YLCSQCPHELQCPQLSAPKPLACSFSQAYHPIPFSWNKKPKEEKFSMVILARGYPEEASR 1462
++ + CPHELQCPQLSAPKPLACSFSQAYHPIPFSWNKKPKEEKFSMVILARGYPEEASR
Sbjct: 203 FVFAPCPHELQCPQLSAPKPLACSFSQAYHPIPFSWNKKPKEEKFSMVILARGYPEEASR 262
Query: 1463 WPPYYSP 1483
WP P
Sbjct: 263 WPRITQP 269
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,225,871
Number of extensions: 1112298
Number of successful extensions: 3822
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3821
Number of HSP's successfully gapped: 4
Length of query: 496
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 393
Effective length of database: 8,779,541
Effective search space: 3450359613
Effective search space used: 3450359613
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013878
(1490 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001025161.1| methyltransferase-like protein 17, mitochond... 505 e-143
>ref|NP_001025161.1| methyltransferase-like protein 17, mitochondrial precursor [Mus
musculus].
Length = 461
Score = 505 bits (1301), Expect = e-143
Identities = 262/351 (74%), Positives = 286/351 (81%)
Frame = +3
Query: 102 PRCRALAALVPGVSQVDNKSDFLGKKSHRRHPGILQLSRVRLPQALVDAATLLLLESSMP 281
P+ RA AALVPGVSQVDN SDFLGKK HR+HPGIL L V+LPQAL DAA L+L E M
Sbjct: 23 PQSRAYAALVPGVSQVDNGSDFLGKKPHRKHPGILHLPHVQLPQALADAAQLMLFERPMR 82
Query: 282 NMEKQVQALTNYLWSRHLPVETEELQRRAVHLEKKFLENADSCQMEEKLHGDVLRALRRT 461
++EKQVQALTNYLWSRHLPVE EELQRRA +LEKKFLE DS EEKL VL ALR+T
Sbjct: 83 SVEKQVQALTNYLWSRHLPVEPEELQRRAAYLEKKFLEKQDSAPTEEKLREAVLHALRKT 142
Query: 462 TYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQPQTLMDFGSGTGSVTW 641
TYHWQELSY+E LSL+YMAARLDGGFAAV RAFHEIQAR PEF+PQTLMDFGSGTGSV W
Sbjct: 143 TYHWQELSYSEELSLIYMAARLDGGFAAVFRAFHEIQARIPEFRPQTLMDFGSGTGSVAW 202
Query: 642 AAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGVFFRQFLPVSPKVQFDV 821
AAH TWGQSLREY+CVDSSAAML LAEKLLKGGSESG P +PGVFFRQFLPVSPKVQFDV
Sbjct: 203 AAHRTWGQSLREYVCVDSSAAMLGLAEKLLKGGSESGKPCIPGVFFRQFLPVSPKVQFDV 262
Query: 822 VVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSLLMDARDLVLNEKEKSP 1001
VVSA++LSELPS+ADR +++Q LWRKTSHFL+LVENGTKAGH LLMDAR+LVL EKEKSP
Sbjct: 263 VVSAYALSELPSRADRIEVIQNLWRKTSHFLVLVENGTKAGHRLLMDARNLVLGEKEKSP 322
Query: 1002 LDPRPGFVFAPVSITSTFPSMQRTELTCGQEKYEGKAKAPSTTLGHFPISF 1154
LD RP FVFAP EL C Q K+ A S + + PI F
Sbjct: 323 LDLRPSFVFAPCP----------HELPCPQLN-ASKSLACSFSQAYHPIPF 362
Score = 110 bits (276), Expect = 2e-24
Identities = 49/67 (73%), Positives = 56/67 (83%)
Frame = +2
Query: 1283 YLCSQCPHELQCPQLSAPKPLACSFSQAYHPIPFSWNKKPKEEKFSMVILARGYPEEASR 1462
++ + CPHEL CPQL+A K LACSFSQAYHPIPF+WNKKPKEE FSMVILARG P+EA+R
Sbjct: 329 FVFAPCPHELPCPQLNASKSLACSFSQAYHPIPFNWNKKPKEEIFSMVILARGSPKEANR 388
Query: 1463 WPPYYSP 1483
WP P
Sbjct: 389 WPRITQP 395
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,989,572
Number of extensions: 1480088
Number of successful extensions: 4861
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4859
Number of HSP's successfully gapped: 2
Length of query: 496
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 391
Effective length of database: 12,463,779
Effective search space: 4873337589
Effective search space used: 4873337589
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013878
(1490 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001025162.1| methyltransferase-like protein 17, mitochond... 528 e-150
Alignment gi|NP_073571.1| methyltransferase-like protein 17, mitochondria... 528 e-150
>ref|NP_001025162.1| methyltransferase-like protein 17, mitochondrial isoform 1 [Homo
sapiens].
Length = 478
Score = 528 bits (1359), Expect = e-150
Identities = 269/330 (81%), Positives = 284/330 (86%)
Frame = +3
Query: 96 VAPRCRALAALVPGVSQVDNKSDFLGKKSHRRHPGILQLSRVRLPQALVDAATLLLLESS 275
VAP+ RALAALVPGV+QVDNKS FL K+ HR+HPGIL+L VRLPQAL + A LLLL S+
Sbjct: 20 VAPQARALAALVPGVTQVDNKSGFLQKRPHRQHPGILKLPHVRLPQALANGAQLLLLGSA 79
Query: 276 MPNMEKQVQALTNYLWSRHLPVETEELQRRAVHLEKKFLENADSCQMEEKLHGDVLRALR 455
P ME QVQ LT+YLWSRHLPVE EELQRRA HLEKKFLEN D Q EEKL G VL ALR
Sbjct: 80 GPTMENQVQTLTSYLWSRHLPVEPEELQRRARHLEKKFLENPDLSQTEEKLRGAVLHALR 139
Query: 456 RTTYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQPQTLMDFGSGTGSV 635
+TTYHWQELSY EGLSL+YMAARLDGGFAAVSRAFHEI+AR P FQPQTLMDFGSGTGSV
Sbjct: 140 KTTYHWQELSYTEGLSLVYMAARLDGGFAAVSRAFHEIRARNPAFQPQTLMDFGSGTGSV 199
Query: 636 TWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGVFFRQFLPVSPKVQF 815
TWAAHS WGQSLREYMCVD SAAML LAEKLLKGGSESG PY+PGVFFRQFLPVSPKVQF
Sbjct: 200 TWAAHSIWGQSLREYMCVDRSAAMLVLAEKLLKGGSESGEPYIPGVFFRQFLPVSPKVQF 259
Query: 816 DVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSLLMDARDLVLNEKEK 995
DVVVSAFSLSELPSKADR ++VQTLWRKT HFL+LVENGTKAGHSLLMDARDLVL KEK
Sbjct: 260 DVVVSAFSLSELPSKADRTEVVQTLWRKTGHFLVLVENGTKAGHSLLMDARDLVLKGKEK 319
Query: 996 SPLDPRPGFVFAPVSITSTFPSMQRTELTC 1085
SPLDPRPGFVFAP P Q T L C
Sbjct: 320 SPLDPRPGFVFAP--CPHELPCPQLTNLAC 347
Score = 107 bits (266), Expect = 4e-23
Identities = 50/67 (74%), Positives = 54/67 (80%)
Frame = +2
Query: 1283 YLCSQCPHELQCPQLSAPKPLACSFSQAYHPIPFSWNKKPKEEKFSMVILARGYPEEASR 1462
++ + CPHEL CPQL+ LACSFSQAYHPIPFSWNKKPKEEKFSMVILARG PEEA R
Sbjct: 328 FVFAPCPHELPCPQLTN---LACSFSQAYHPIPFSWNKKPKEEKFSMVILARGSPEEAHR 384
Query: 1463 WPPYYSP 1483
WP P
Sbjct: 385 WPRITQP 391
>ref|NP_073571.1| methyltransferase-like protein 17, mitochondrial isoform 2 [Homo
sapiens].
Length = 456
Score = 528 bits (1359), Expect = e-150
Identities = 269/330 (81%), Positives = 284/330 (86%)
Frame = +3
Query: 96 VAPRCRALAALVPGVSQVDNKSDFLGKKSHRRHPGILQLSRVRLPQALVDAATLLLLESS 275
VAP+ RALAALVPGV+QVDNKS FL K+ HR+HPGIL+L VRLPQAL + A LLLL S+
Sbjct: 20 VAPQARALAALVPGVTQVDNKSGFLQKRPHRQHPGILKLPHVRLPQALANGAQLLLLGSA 79
Query: 276 MPNMEKQVQALTNYLWSRHLPVETEELQRRAVHLEKKFLENADSCQMEEKLHGDVLRALR 455
P ME QVQ LT+YLWSRHLPVE EELQRRA HLEKKFLEN D Q EEKL G VL ALR
Sbjct: 80 GPTMENQVQTLTSYLWSRHLPVEPEELQRRARHLEKKFLENPDLSQTEEKLRGAVLHALR 139
Query: 456 RTTYHWQELSYNEGLSLLYMAARLDGGFAAVSRAFHEIQARFPEFQPQTLMDFGSGTGSV 635
+TTYHWQELSY EGLSL+YMAARLDGGFAAVSRAFHEI+AR P FQPQTLMDFGSGTGSV
Sbjct: 140 KTTYHWQELSYTEGLSLVYMAARLDGGFAAVSRAFHEIRARNPAFQPQTLMDFGSGTGSV 199
Query: 636 TWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGLPYVPGVFFRQFLPVSPKVQF 815
TWAAHS WGQSLREYMCVD SAAML LAEKLLKGGSESG PY+PGVFFRQFLPVSPKVQF
Sbjct: 200 TWAAHSIWGQSLREYMCVDRSAAMLVLAEKLLKGGSESGEPYIPGVFFRQFLPVSPKVQF 259
Query: 816 DVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVENGTKAGHSLLMDARDLVLNEKEK 995
DVVVSAFSLSELPSKADR ++VQTLWRKT HFL+LVENGTKAGHSLLMDARDLVL KEK
Sbjct: 260 DVVVSAFSLSELPSKADRTEVVQTLWRKTGHFLVLVENGTKAGHSLLMDARDLVLKGKEK 319
Query: 996 SPLDPRPGFVFAPVSITSTFPSMQRTELTC 1085
SPLDPRPGFVFAP P Q T L C
Sbjct: 320 SPLDPRPGFVFAP--CPHELPCPQLTNLAC 347
Score = 107 bits (266), Expect = 4e-23
Identities = 50/67 (74%), Positives = 54/67 (80%)
Frame = +2
Query: 1283 YLCSQCPHELQCPQLSAPKPLACSFSQAYHPIPFSWNKKPKEEKFSMVILARGYPEEASR 1462
++ + CPHEL CPQL+ LACSFSQAYHPIPFSWNKKPKEEKFSMVILARG PEEA R
Sbjct: 328 FVFAPCPHELPCPQLTN---LACSFSQAYHPIPFSWNKKPKEEKFSMVILARGSPEEAHR 384
Query: 1463 WPPYYSP 1483
WP P
Sbjct: 385 WPRITQP 391
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,384,245
Number of extensions: 1757355
Number of successful extensions: 5965
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5950
Number of HSP's successfully gapped: 4
Length of query: 496
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 389
Effective length of database: 14,770,016
Effective search space: 5745536224
Effective search space used: 5745536224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013878
(1490 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896236.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 807 0.0
gb|GL896328.1| Sus scrofa unplaced genomic scaffold chrU_scaffold68 244 1e-61
>gb|GL896236.1| Sus scrofa unplaced genomic scaffold chrU_scaffold597
Length = 70069
Score = 807 bits (407), Expect = 0.0
Identities = 407/407 (100%)
Strand = Plus / Plus
Query: 984 gaaaaagaaaagtcacctttggaccctcgacctggttttgtctttgccccagtgagtatt 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5227 gaaaaagaaaagtcacctttggaccctcgacctggttttgtctttgccccagtgagtatt 5286
Query: 1044 acttctacctttcccagcatgcaaagaactgaactcacctgtggccaggaaaagtatgag 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5287 acttctacctttcccagcatgcaaagaactgaactcacctgtggccaggaaaagtatgag 5346
Query: 1104 ggtaaagctaaggcaccttccactactttgggtcactttccaatttctttcttagtgatt 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5347 ggtaaagctaaggcaccttccactactttgggtcactttccaatttctttcttagtgatt 5406
Query: 1164 gccctggctttccctaccctcttctcttgtgctcctttatccctaaaccttatgggccca 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407 gccctggctttccctaccctcttctcttgtgctcctttatccctaaaccttatgggccca 5466
Query: 1224 atcactctcagcttttcagttttatgatctgaggttcttttgtcttaactcatgtgtttt 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5467 atcactctcagcttttcagttttatgatctgaggttcttttgtcttaactcatgtgtttt 5526
Query: 1284 atttgtgttcacagtgtccccatgaacttcagtgtccccagttgtcagcccctaagcccc 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5527 atttgtgttcacagtgtccccatgaacttcagtgtccccagttgtcagcccctaagcccc 5586
Query: 1344 tggcctgtagcttttcccaggcttaccatcctatccccttcagctgg 1390
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5587 tggcctgtagcttttcccaggcttaccatcctatccccttcagctgg 5633
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 805 aggtacaattcgatgtagtggtatcagccttttctctaagcgaactacccagcaaggctg 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4070 aggtacaattcgatgtagtggtatcagccttttctctaagcgaactacccagcaaggctg 4129
Query: 865 accgcaatgatatagtccaaactttgtggcgcaaaacaagtcattttctg 914
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4130 accgcaatgatatagtccaaactttgtggcgcaaaacaagtcattttctg 4179
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 640 gggctgctcatagtacttggggccagagcctacgtgaatacatgtgtgtggacagctcag 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3349 gggctgctcatagtacttggggccagagcctacgtgaatacatgtgtgtggacagctcag 3408
Query: 700 ctgccatgttggatctggcagaaaagctactgaaaggt 737
||||||||||||||||||||||||||||||||||||||
Sbjct: 3409 ctgccatgttggatctggcagaaaagctactgaaaggt 3446
Score = 176 bits (89), Expect = 2e-41
Identities = 99/101 (98%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 1390 gaacaagaagccaaaagaggaaaagttctctatggtaatccttgcccgagggtatccaga 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5851 gaacaagaagccaaaagaggaaaagttctctatggtaatccttgcccgagggtatccaga 5910
Query: 1450 ggaggcaagtcgctggcccccgtattactcaccctgtcctt 1490
|||||||||||||||| |||||||||||||| |||||||||
Sbjct: 5911 ggaggcaagtcgctgg-ccccgtattactcagcctgtcctt 5950
Score = 174 bits (88), Expect = 9e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 400 cagactcatgtcagatggaggaaaaacttcatggagatgtgctgcgtgctctgcgcagaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 cagactcatgtcagatggaggaaaaacttcatggagatgtgctgcgtgctctgcgcagaa 1465
Query: 460 ctacctatcattggcaagaactgagcta 487
||||||||||||||||||||||||||||
Sbjct: 1466 ctacctatcattggcaagaactgagcta 1493
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 483 agctacaatgagggactgagcctgttgtatatggcagcaagactggatggtggctttgca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1868 agctacaatgagggactgagcctgttgtatatggcagcaagactggatggtggctttgca 1927
Query: 543 gcagtctccagggcattccatgag 566
||||||||||||||||||||||||
Sbjct: 1928 gcagtctccagggcattccatgag 1951
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 734 aggtggttcagaatctgggctgccttatgttccaggggtctttttcagacagtttctacc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3803 aggtggttcagaatctgggctgccttatgttccaggggtctttttcagacagtttctacc 3862
Query: 794 tgtatcacccaagg 807
||||||||||||||
Sbjct: 3863 tgtatcacccaagg 3876
Score = 145 bits (73), Expect = 8e-32
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 565 agatccaagctcgatttccagagttccagccacaaaccttaatggactttggctcgggta 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2814 agatccaagctcgatttccagagttccagccacaaaccttaatggactttggctcaggta 2873
Query: 625 ctggttctgtcacctgg 641
|||||||||||||||||
Sbjct: 2874 ctggttctgtcacctgg 2890
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 914 gatattggtggagaatggaacaaaagctggacactcccttctcatggatgccagggacct 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4449 gatattggtggagaatggaacaaaagctggacactcccttctcatggatgccagggacct 4508
Query: 974 ggtccttaatg 984
|||||||||||
Sbjct: 4509 ggtccttaatg 4519
>gb|GL896328.1| Sus scrofa unplaced genomic scaffold chrU_scaffold68
Length = 126
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 280 ccaatatggagaagcaggtgcaagcactgaccaattatctctggagccggcatttacccg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ccaatatggagaagcaggtgcaagcactgaccaattatctctggagccggcatttacccg 67
Query: 340 tagagacagaggagttgcaaagacgggctgtacatttggagaaaaaattcttggaaaacg 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tagagacagaggagttgcaaagacgggctgtacatttggagaaaaaattcttggaaaacg 7
Query: 400 cag 402
|||
Sbjct: 6 cag 4
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,539,850
Number of extensions: 309
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 10
Length of query: 1490
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1469
Effective length of database: 2,808,413,156
Effective search space: 4125558926164
Effective search space used: 4125558926164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)