Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013881
(1155 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076869.1| 39S ribosomal protein L37, mitochondrial [Bo... 649 0.0
>ref|NP_001076869.1| 39S ribosomal protein L37, mitochondrial [Bos taurus].
Length = 423
Score = 649 bits (1674), Expect = 0.0
Identities = 306/336 (91%), Positives = 321/336 (95%)
Frame = +2
Query: 146 YEWGVRSTRKPEPPPLDRVYEIPGLEPITYAGKMHFMPGLARPVFPPWDPGWTHPKFRRL 325
YEWGVRSTRKPEPPPLDRVYEIPGLEPIT+AGKMHFMPGLARPVFPPWDPGWTHPKFRRL
Sbjct: 31 YEWGVRSTRKPEPPPLDRVYEIPGLEPITFAGKMHFMPGLARPVFPPWDPGWTHPKFRRL 90
Query: 326 PPLHEHPLYKDQACYVFHQRCRLLEGVKQALWLTKTQLIEGLPEKVLRLADDPRNHIENQ 505
PPL EHPLYKD+ CY+FHQRCRLLEGVKQALWLTKT+LIEGLPEKVL LAD+PRNHIENQ
Sbjct: 91 PPLQEHPLYKDEVCYIFHQRCRLLEGVKQALWLTKTKLIEGLPEKVLSLADNPRNHIENQ 150
Query: 506 DERVLNAISHARLWHSTEDIPKRETYCPVIVDSLIQLCKSQILKHPSLARRICAQNNTLS 685
DERVLN ISHARLWHSTEDIPKRETYCPVIVDSLIQLCKSQILKHPSLARRICAQ N LS
Sbjct: 151 DERVLNVISHARLWHSTEDIPKRETYCPVIVDSLIQLCKSQILKHPSLARRICAQKNMLS 210
Query: 686 ATWNRESILLQVHGSSGARLNAKDPLPPVASQEEVEATKNHVLETFYPISPTMGLQECNV 865
TW RES L+QVHGSSGA+LNAKDPLPP+AS+EEVEATKNHVLETF PISPT+ LQEC++
Sbjct: 211 TTWKRESTLIQVHGSSGAQLNAKDPLPPIASREEVEATKNHVLETFSPISPTISLQECHI 270
Query: 866 YDVNDDTGFQEGYPYPCPHTLYFLESANLRPRRFQPDQLRAKMILFAFGSALAQARLLYG 1045
YDVNDDTGF+EGYPYPCPHTLY LESANLR RFQPDQLRAKMILFAFG+ALAQARLLYG
Sbjct: 271 YDVNDDTGFREGYPYPCPHTLYLLESANLRAHRFQPDQLRAKMILFAFGNALAQARLLYG 330
Query: 1046 NDSKVLEQPVVVQSVGTDGRLFQFLVLQLNTTDLAS 1153
ND KVLEQPVVVQSVGTDGR+FQFLVLQLNTTDLAS
Sbjct: 331 NDPKVLEQPVVVQSVGTDGRVFQFLVLQLNTTDLAS 366
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,751,452
Number of extensions: 1682574
Number of successful extensions: 9448
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9294
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,240,222
Effective search space: 4001502382
Effective search space used: 4001502382
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013881
(1155 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546697.2| PREDICTED: similar to mitochondrial ribosomal p... 606 e-173
>ref|XP_546697.2| PREDICTED: similar to mitochondrial ribosomal protein L37 [Canis
familiaris].
Length = 423
Score = 606 bits (1563), Expect = e-173
Identities = 288/336 (85%), Positives = 307/336 (91%)
Frame = +2
Query: 146 YEWGVRSTRKPEPPPLDRVYEIPGLEPITYAGKMHFMPGLARPVFPPWDPGWTHPKFRRL 325
YEWGVRSTRKPEP PL+RVY+IPGLEPITYAGKMHFMPGLARPVFPPWDPGWTHPKFRR
Sbjct: 31 YEWGVRSTRKPEPRPLNRVYDIPGLEPITYAGKMHFMPGLARPVFPPWDPGWTHPKFRRP 90
Query: 326 PPLHEHPLYKDQACYVFHQRCRLLEGVKQALWLTKTQLIEGLPEKVLRLADDPRNHIENQ 505
P+HE PLYKD+ CYVFHQRCRLLEGVKQALWLTK +LIEGLPEKVL L DP+N+IENQ
Sbjct: 91 TPVHEQPLYKDRVCYVFHQRCRLLEGVKQALWLTKAKLIEGLPEKVLSLVSDPKNYIENQ 150
Query: 506 DERVLNAISHARLWHSTEDIPKRETYCPVIVDSLIQLCKSQILKHPSLARRICAQNNTLS 685
DERVLN ISHARLWHSTED PKRE YCPVIVDSLIQLCKSQILKHPSL RRI A+N T S
Sbjct: 151 DERVLNVISHARLWHSTEDTPKREAYCPVIVDSLIQLCKSQILKHPSLTRRIYAKNYTFS 210
Query: 686 ATWNRESILLQVHGSSGARLNAKDPLPPVASQEEVEATKNHVLETFYPISPTMGLQECNV 865
TWNRES LLQV G SGARLN+KDPLP +AS+EEVEATKNH+LE FYPISPT+ LQECNV
Sbjct: 211 TTWNRESFLLQVCGPSGARLNSKDPLPAIASREEVEATKNHILEAFYPISPTIDLQECNV 270
Query: 866 YDVNDDTGFQEGYPYPCPHTLYFLESANLRPRRFQPDQLRAKMILFAFGSALAQARLLYG 1045
YDV D+TGFQEGYPYP PHTLYFLE+ANLRP RF+PDQLRAKMILFAFG+AL QAR LYG
Sbjct: 271 YDVEDNTGFQEGYPYPYPHTLYFLETANLRPHRFRPDQLRAKMILFAFGNALVQARRLYG 330
Query: 1046 NDSKVLEQPVVVQSVGTDGRLFQFLVLQLNTTDLAS 1153
N +KVLEQPVVVQSVGTDGR+FQFLVLQLNTTDLAS
Sbjct: 331 NHTKVLEQPVVVQSVGTDGRVFQFLVLQLNTTDLAS 366
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,035,568
Number of extensions: 1731880
Number of successful extensions: 9542
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9377
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 280
Effective length of database: 15,374,224
Effective search space: 4304782720
Effective search space used: 4304782720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013881
(1155 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361776.1| PREDICTED: 39S ribosomal protein L37, mitoch... 386 e-107
Alignment gi|XP_003362158.1| PREDICTED: 39S ribosomal protein L37, mitoch... 72 6e-13
>ref|XP_003361776.1| PREDICTED: 39S ribosomal protein L37, mitochondrial-like, partial
[Sus scrofa].
Length = 212
Score = 386 bits (991), Expect = e-107
Identities = 179/185 (96%), Positives = 179/185 (96%)
Frame = +2
Query: 146 YEWGVRSTRKPEPPPLDRVYEIPGLEPITYAGKMHFMPGLARPVFPPWDPGWTHPKFRRL 325
YEWGVRSTRKPEPPP IPGLEPITYAGKMHFMPGLARPVFPPWDPGWTHPKFRRL
Sbjct: 28 YEWGVRSTRKPEPPPXXXXXXIPGLEPITYAGKMHFMPGLARPVFPPWDPGWTHPKFRRL 87
Query: 326 PPLHEHPLYKDQACYVFHQRCRLLEGVKQALWLTKTQLIEGLPEKVLRLADDPRNHIENQ 505
PPLHEHPLYKDQACYVFHQRCRLLEGVKQALWLTKTQLIEGLPEKVLRLADDPRNHIENQ
Sbjct: 88 PPLHEHPLYKDQACYVFHQRCRLLEGVKQALWLTKTQLIEGLPEKVLRLADDPRNHIENQ 147
Query: 506 DERVLNAISHARLWHSTEDIPKRETYCPVIVDSLIQLCKSQILKHPSLARRICAQNNTLS 685
DERVLNAISHARLWHSTEDIPKRETYCPVIVDSLIQLCKSQILKHPSLARRICAQNNTLS
Sbjct: 148 DERVLNAISHARLWHSTEDIPKRETYCPVIVDSLIQLCKSQILKHPSLARRICAQNNTLS 207
Query: 686 ATWNR 700
ATWNR
Sbjct: 208 ATWNR 212
>ref|XP_003362158.1| PREDICTED: 39S ribosomal protein L37, mitochondrial-like, partial
[Sus scrofa].
Length = 93
Score = 72.0 bits (175), Expect = 6e-13
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +2
Query: 1046 NDSKVLEQPVVVQSVGTDGRLFQFLVLQLNTTDLAS 1153
NDSKVLEQPVVVQSVGTDGRLFQFLVLQLNTTDLAS
Sbjct: 1 NDSKVLEQPVVVQSVGTDGRLFQFLVLQLNTTDLAS 36
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,452,551
Number of extensions: 1089504
Number of successful extensions: 6208
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6100
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 284
Effective length of database: 8,829,335
Effective search space: 2507531140
Effective search space used: 2507531140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013881
(1155 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079776.1| 39S ribosomal protein L37, mitochondrial precur... 574 e-164
>ref|NP_079776.1| 39S ribosomal protein L37, mitochondrial precursor [Mus musculus].
Length = 423
Score = 574 bits (1480), Expect = e-164
Identities = 270/336 (80%), Positives = 303/336 (90%)
Frame = +2
Query: 146 YEWGVRSTRKPEPPPLDRVYEIPGLEPITYAGKMHFMPGLARPVFPPWDPGWTHPKFRRL 325
YEWGVRSTRKPEP PLDRVYEIPGLEPITY GK HF+P LARP+FPPW+ GW P+F R
Sbjct: 31 YEWGVRSTRKPEPRPLDRVYEIPGLEPITYEGKKHFVPWLARPIFPPWERGWNDPRFHRA 90
Query: 326 PPLHEHPLYKDQACYVFHQRCRLLEGVKQALWLTKTQLIEGLPEKVLRLADDPRNHIENQ 505
P+HE LYK++ CY+FHQRCRLLEG+KQALWLTKT+LIEGLP+KVL L DDP NHIENQ
Sbjct: 91 APIHEQTLYKEEPCYIFHQRCRLLEGMKQALWLTKTKLIEGLPKKVLSLVDDPANHIENQ 150
Query: 506 DERVLNAISHARLWHSTEDIPKRETYCPVIVDSLIQLCKSQILKHPSLARRICAQNNTLS 685
++RVL+ ISHARLWHSTEDIPKRETYCP+IVDSLIQLCKSQILKHPSLARR AQN TL+
Sbjct: 151 EQRVLDIISHARLWHSTEDIPKRETYCPLIVDSLIQLCKSQILKHPSLARRTSAQNCTLA 210
Query: 686 ATWNRESILLQVHGSSGARLNAKDPLPPVASQEEVEATKNHVLETFYPISPTMGLQECNV 865
TWNRES+LLQV G+S L+AKDPLP +AS+EEVEAT++HVLETFYPISPT+ LQEC+V
Sbjct: 211 TTWNRESLLLQVRGTSSTILSAKDPLPVIASREEVEATRSHVLETFYPISPTIDLQECHV 270
Query: 866 YDVNDDTGFQEGYPYPCPHTLYFLESANLRPRRFQPDQLRAKMILFAFGSALAQARLLYG 1045
Y+V DDTGFQEGYPYP PHTLYFLE ANLRP+RF P+QLRAKM+LFAF +ALAQARLLYG
Sbjct: 271 YEVKDDTGFQEGYPYPHPHTLYFLEKANLRPQRFLPEQLRAKMLLFAFANALAQARLLYG 330
Query: 1046 NDSKVLEQPVVVQSVGTDGRLFQFLVLQLNTTDLAS 1153
N +KVLEQP+VVQSVGTDGR+FQFLVLQLNTTDLAS
Sbjct: 331 NTAKVLEQPIVVQSVGTDGRVFQFLVLQLNTTDLAS 366
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,486,001
Number of extensions: 1395901
Number of successful extensions: 7174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7061
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 282
Effective length of database: 12,523,851
Effective search space: 3531725982
Effective search space used: 3531725982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013881
(1155 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057575.2| 39S ribosomal protein L37, mitochondrial precur... 599 e-171
>ref|NP_057575.2| 39S ribosomal protein L37, mitochondrial precursor [Homo sapiens].
Length = 423
Score = 599 bits (1544), Expect = e-171
Identities = 282/334 (84%), Positives = 304/334 (91%)
Frame = +2
Query: 146 YEWGVRSTRKPEPPPLDRVYEIPGLEPITYAGKMHFMPGLARPVFPPWDPGWTHPKFRRL 325
YEWGVRSTRK EPPPLDRVYEIPGLEPIT+AGKMHF+P LARP+FPPWD G+ P+F R
Sbjct: 31 YEWGVRSTRKSEPPPLDRVYEIPGLEPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRS 90
Query: 326 PPLHEHPLYKDQACYVFHQRCRLLEGVKQALWLTKTQLIEGLPEKVLRLADDPRNHIENQ 505
PPLHEHPLYKDQACY+FH RCRLLEGVKQALWLTKT+LIEGLPEKVL L DDPRNHIENQ
Sbjct: 91 PPLHEHPLYKDQACYIFHHRCRLLEGVKQALWLTKTKLIEGLPEKVLSLVDDPRNHIENQ 150
Query: 506 DERVLNAISHARLWHSTEDIPKRETYCPVIVDSLIQLCKSQILKHPSLARRICAQNNTLS 685
DE VLN ISHARLW +TE+IPKRETYCPVIVD+LIQLCKSQILKHPSLARRIC QN+T S
Sbjct: 151 DECVLNVISHARLWQTTEEIPKRETYCPVIVDNLIQLCKSQILKHPSLARRICVQNSTFS 210
Query: 686 ATWNRESILLQVHGSSGARLNAKDPLPPVASQEEVEATKNHVLETFYPISPTMGLQECNV 865
ATWNRES+LLQV GS GARL+ KDPLP +AS+EE+EATKNHVLETFYPISP + L ECN+
Sbjct: 211 ATWNRESLLLQVRGSGGARLSTKDPLPTIASREEIEATKNHVLETFYPISPIIDLHECNI 270
Query: 866 YDVNDDTGFQEGYPYPCPHTLYFLESANLRPRRFQPDQLRAKMILFAFGSALAQARLLYG 1045
YDV +DTGFQEGYPYP PHTLY L+ ANLRP R QPDQLRAKMILFAFGSALAQARLLYG
Sbjct: 271 YDVKNDTGFQEGYPYPYPHTLYLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYG 330
Query: 1046 NDSKVLEQPVVVQSVGTDGRLFQFLVLQLNTTDL 1147
ND+KVLEQPVVVQSVGTDGR+F FLV QLNTTDL
Sbjct: 331 NDAKVLEQPVVVQSVGTDGRVFHFLVFQLNTTDL 364
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,902,070
Number of extensions: 1691725
Number of successful extensions: 8867
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8727
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,868,908
Effective search space: 4178163148
Effective search space used: 4178163148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013881
(1155 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895333.2| Sus scrofa unplaced genomic scaffold ChrUScaf3217 392 e-106
gb|GL896474.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 375 e-101
gb|GL896182.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 319 2e-84
gb|GL896363.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 204 8e-50
>gb|GL895333.2| Sus scrofa unplaced genomic scaffold ChrUScaf3217
Length = 132163
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Minus
Query: 207 agatcccaggactggagcccatcacctacgcggggaaaatgcacttcatgcccgggctgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6402 agatcccaggactggagcccatcacctacgcggggaaaatgcacttcatgcccgggctgg 6343
Query: 267 cgcggccagtcttccctccctgggaccccggctggacgcacccaaagttccgccgtttgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342 cgcggccagtcttccctccctgggaccccggctggacgcacccaaagttccgccgtttgc 6283
Query: 327 ccccgcttcacgagcacccgctgtacaaggaccaggcgtgctacgtctttcaccagcgtt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6282 ccccgcttcacgagcacccgctgtacaaggaccaggcgtgctacgtctttcaccagcgtt 6223
Query: 387 gccgtctcctcgagggtg 404
||||||||||||||||||
Sbjct: 6222 gccgtctcctcgagggtg 6205
Score = 367 bits (185), Expect = 9e-99
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 401 ggtgtaaagcaggccctctggcttaccaagacccagttaatagaaggccttcctgagaaa 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2090 ggtgtaaagcaggccctctggcttaccaagacccagttaatagaaggccttcctgagaaa 2031
Query: 461 gtgcttcgccttgctgacgatccacggaaccacatagagaaccaggatgaacgcgttctg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2030 gtgcttcgccttgctgacgatccacggaaccacatagagaaccaggatgaacgcgttctg 1971
Query: 521 aatgccatctctcatgctcgcctctggcactctactgaagacatccccaagagagagacc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1970 aatgccatctctcatgctcgcctctggcactctactgaagacatccccaagagagagacc 1911
Query: 581 tactg 585
|||||
Sbjct: 1910 tactg 1906
Score = 299 bits (151), Expect = 2e-78
Identities = 178/189 (94%), Gaps = 9/189 (4%)
Strand = Plus / Minus
Query: 2 gcgctcgggaagatggtggcgtccaggtggaggctttgagaagatccgctgggtatggcg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6682 gcgctcgggaagatggtggcgtccaggtggaggctttgagaagatccgctgggtatggcg 6623
Query: 62 ttggcgtctgggcccgcaaggcgggcgctggctcgcctcggccggctcggccttgggggc 121
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6622 ttggcgtctgggcccgcaaggcgggcgctnn---------gccggctcggccttgggggc 6572
Query: 122 tgcggggccccgagacgcggggcgtacgagtggggtgtgcgctccacgcggaaacccgag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6571 tgcggggccccgagacgcggggcgtacgagtggggtgtgcgctccacgcggaaacccgag 6512
Query: 182 cctcctccc 190
|||||||||
Sbjct: 6511 cctcctccc 6503
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 585 gcccagtcattgtggacagtctgattcagctgtgtaaatcccagattctcaagcatcctt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1815 gcccagtcattgtggacagtctgattcagctgtgtaaatcccagattctcaagcatcctt 1756
Query: 645 ctctggccaggcggatctgtgcccaaaacaacacattatctgccacctggaatcgag 701
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1755 ctctggccaggcggatctgtgcccaaaacaacacattatctgccacctggaatcgag 1699
>gb|GL896474.1| Sus scrofa unplaced genomic scaffold chrU_scaffold810
Length = 5533
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 700 agagtctattctccttcaggtccatggttccagtggagcccgactgaatgccaaggatcc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4102 agagtctattctccttcaggtccatggttccagtggagcccgactgaatgccaaggatcc 4161
Query: 760 tctgccccctgttgcctcccaagaggaggtggaagctactaagaatcacgttctcgagac 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4162 tctgccccctgttgcctcccaagaggaggtggaagctactaagaatcacgttctcgagac 4221
Query: 820 cttctatcccatatctcccactatgggtcttcaggaatgcaatgtttatgatgtgaatga 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4222 cttctatcccatatctcccactatgggtcttcaggaatgcaatgtttatgatgtgaatga 4281
Query: 880 tgatacagg 888
|||||||||
Sbjct: 4282 tgatacagg 4290
>gb|GL896182.1| Sus scrofa unplaced genomic scaffold chrU_scaffold548
Length = 3923
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 885 cagggttccaggagggttatccttacccctgtccccacaccctgtatttcctggagtcag 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 cagggttccaggagggttatccttacccctgtccccacaccctgtatttcctggagtcag 1125
Query: 945 ccaatttacgaccacgccgctttcaaccagatcagctgcgggccaagatgatcctgtttg 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 ccaatttacgaccacgccgctttcaaccagatcagctgcgggccaagatgatcctgtttg 1065
Query: 1005 cttttggaagtgccctggctcaggcccggctcctctatggg 1045
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 cttttggaagtgccctggctcaggcccggctcctctatggg 1024
>gb|GL896363.1| Sus scrofa unplaced genomic scaffold chrU_scaffold710
Length = 4802
Score = 204 bits (103), Expect = 8e-50
Identities = 109/111 (98%)
Strand = Plus / Plus
Query: 1045 gaacgactctaaggttttggagcaaccggtcgttgtgcaaagtgtgggtactgatggacg 1104
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1097 gaacgactctaaggttttggagcagccggtcgttgtgcagagtgtgggtactgatggacg 1156
Query: 1105 tctcttccagtttctggtgctacaactgaacaccacagatctggcctctga 1155
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 tctcttccagtttctggtgctacaactgaacaccacagatctggcctctga 1207
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,713,834
Number of extensions: 163
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 8
Length of query: 1155
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1134
Effective length of database: 2,808,413,156
Effective search space: 3184740518904
Effective search space used: 3184740518904
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)