Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013882
(1008 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073258.1| hypothetical protein LOC616142 [Bos taurus]. 194 1e-49
>ref|NP_001073258.1| hypothetical protein LOC616142 [Bos taurus].
Length = 237
Score = 194 bits (493), Expect = 1e-49
Identities = 110/199 (55%), Positives = 126/199 (63%), Gaps = 9/199 (4%)
Frame = +3
Query: 186 QEARVTTSARTACQTAASHRAPDRRTSKKFKHDRGHLGKSELQKLVPQSDGTTVPAESPR 365
Q+ VTTSA+TACQT +SH+A DRRTSKKFK+D+GH+ KSELQK +SD P+E+P
Sbjct: 29 QDTHVTTSAQTACQTPSSHKATDRRTSKKFKYDKGHIVKSELQK--HRSDSAATPSETPG 86
Query: 366 GPEPXXXXXXXXXXPGEEV--------AGLPPGHRRASTDTCXXXXXXXXXXXXXXXLSS 521
EP G+E AG PG +D
Sbjct: 87 THEPLASAEDGASLLGKEAGGSTPQGTAGPLPGRCGTESDASPAETENEPLPPRHGAPVG 146
Query: 522 GESDGGGPTQDGAVLDAERGTPA-LQLDTSVLLDDDSNQPMPVSRFFGNVELMQDLPPAS 698
GES+GG P +DGA LD E+G A L +D S LLDDDSNQPMPVSRFFGNVELMQDLPP S
Sbjct: 147 GESNGGCPARDGAALDLEQGPGAPLLMDGSALLDDDSNQPMPVSRFFGNVELMQDLPPVS 206
Query: 699 SSCPSMSRREFRKMHFRAK 755
SSCPSMSRREFRKMHFRAK
Sbjct: 207 SSCPSMSRREFRKMHFRAK 225
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,633,267
Number of extensions: 958416
Number of successful extensions: 4782
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4771
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013882
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013882
(1008 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536724.2| PREDICTED: hypothetical protein XP_536724 [Cani... 189 4e-48
>ref|XP_536724.2| PREDICTED: hypothetical protein XP_536724 [Canis familiaris].
Length = 239
Score = 189 bits (480), Expect = 4e-48
Identities = 111/202 (54%), Positives = 119/202 (58%), Gaps = 12/202 (5%)
Frame = +3
Query: 186 QEARVTTSARTACQTAASHRAPDRRTSKKFKHDRGHLGKSELQKLVPQSDGTTVPA---E 356
+EA SART CQT SH+A DRRTSKKFK D+GHL KSELQKL PQSD VP E
Sbjct: 29 REASTAVSARTVCQT--SHKAADRRTSKKFKCDKGHLVKSELQKLAPQSDRVAVPRIPPE 86
Query: 357 SPRGPEPXXXXXXXXXXPGE--------EVAGLPPGHRRASTDTCXXXXXXXXXXXXXXX 512
SP EP PG+ E AG P H A DTC
Sbjct: 87 SPGNSEPLGFAKEHALPPGKGAGAPAQPEAAGCPLRHATAVGDTCPAETEDSLALPAHTP 146
Query: 513 LSSGESDGGGPTQDGAVLDAERGT-PALQLDTSVLLDDDSNQPMPVSRFFGNVELMQDLP 689
L+ E Q G+ L E+ P LQ D SV LD+DSNQPMPV RFFGNVELMQDLP
Sbjct: 147 LAGEEPHSSRSAQGGSTLHTEQAARPPLQTDDSVFLDEDSNQPMPVGRFFGNVELMQDLP 206
Query: 690 PASSSCPSMSRREFRKMHFRAK 755
PASSSCPSMSRREFRKMHFRAK
Sbjct: 207 PASSSCPSMSRREFRKMHFRAK 228
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,060,465
Number of extensions: 979283
Number of successful extensions: 5009
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5004
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013882
(1008 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127567.1| PREDICTED: UPF0688 protein C1orf174-like [Su... 327 8e-90
>ref|XP_003127567.1| PREDICTED: UPF0688 protein C1orf174-like [Sus scrofa].
Length = 225
Score = 327 bits (837), Expect = 8e-90
Identities = 171/225 (76%), Positives = 172/225 (76%)
Frame = +3
Query: 117 MRSRKXXXXXXXXXXXXXXXXXXQEARVTTSARTACQTAASHRAPDRRTSKKFKHDRGHL 296
MRSRK QEARVTTSARTACQTAASHRAPDRRTSKKFKHDRGHL
Sbjct: 1 MRSRKLAGAVRSSARLRARSCLAQEARVTTSARTACQTAASHRAPDRRTSKKFKHDRGHL 60
Query: 297 GKSELQKLVPQSDGTTVPAESPRGPEPXXXXXXXXXXPGEEVAGLPPGHRRASTDTCXXX 476
GKSELQKLVPQSDGTTVPAESPRGPEP PGEEVAGLPPGHRRASTDTC
Sbjct: 61 GKSELQKLVPQSDGTTVPAESPRGPEPLALAKASALLPGEEVAGLPPGHRRASTDTCPAQ 120
Query: 477 XXXXXXXXXXXXLSSGESDGGGPTQDGAVLDAERGTPALQLDTSVLLDDDSNQPMPVSRF 656
LSSGESDGGG TQDGAVL+AERGTPALQLDTSVLLDDDSNQPMPVSRF
Sbjct: 121 GAHPPAPPRPGALSSGESDGGGLTQDGAVLEAERGTPALQLDTSVLLDDDSNQPMPVSRF 180
Query: 657 FGNVELMQDLPPASSSCPSMSRREFRKMHFRAKXXXXXXXXXAEM 791
FGNVELMQDLPPASSSCPSMSRREFRKMHFRAK AEM
Sbjct: 181 FGNVELMQDLPPASSSCPSMSRREFRKMHFRAKDDDEDDGDDAEM 225
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,039,697
Number of extensions: 620462
Number of successful extensions: 3124
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3121
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013882
(1008 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780496.2| hypothetical protein LOC97159 isoform 1 [Mus mu... 156 3e-38
Alignment gi|NP_001156491.1| hypothetical protein LOC97159 isoform 2 [Mus... 145 4e-35
>ref|NP_780496.2| hypothetical protein LOC97159 isoform 1 [Mus musculus].
Length = 230
Score = 156 bits (394), Expect = 3e-38
Identities = 93/194 (47%), Positives = 113/194 (58%), Gaps = 9/194 (4%)
Frame = +3
Query: 201 TTSARTACQTAASHRAPDRRTSKKFKHDRGHLGKSELQKLVPQSDGTTVPAESPRGPEPX 380
+TSA+T C ++SH+A DRRTSKKFK+D+GHL K+ELQKL P+SD +++P +P P
Sbjct: 35 STSAKTTCLASSSHKATDRRTSKKFKYDKGHLVKAELQKLDPKSDISSLPKVAPVAP--- 91
Query: 381 XXXXXXXXXPGEEVAGLPPGHRRASTDTCXXXXXXXXXXXXXXXLSSGESDGGGPTQ--D 554
E +P R C LS+ S + D
Sbjct: 92 -CENKFAEDSAEAAVSVP--ESREPPQGCSTPASEEPSVKAENGLSTEPSSAAAAQEPDD 148
Query: 555 GAVLDAER-------GTPALQLDTSVLLDDDSNQPMPVSRFFGNVELMQDLPPASSSCPS 713
+ AE LQ+D+S+ LDDDSNQPMPVSRFFGNVELMQDLPPASSS PS
Sbjct: 149 SSAGQAEPVPRTEEVRASVLQMDSSIFLDDDSNQPMPVSRFFGNVELMQDLPPASSSYPS 208
Query: 714 MSRREFRKMHFRAK 755
MSRREFRKMHFRAK
Sbjct: 209 MSRREFRKMHFRAK 222
>ref|NP_001156491.1| hypothetical protein LOC97159 isoform 2 [Mus musculus].
Length = 192
Score = 145 bits (367), Expect = 4e-35
Identities = 88/186 (47%), Positives = 107/186 (57%), Gaps = 9/186 (4%)
Frame = +3
Query: 225 QTAASHRAPDRRTSKKFKHDRGHLGKSELQKLVPQSDGTTVPAESPRGPEPXXXXXXXXX 404
+ ++SH+A DRRTSKKFK+D+GHL K+ELQKL P+SD +++P +P P
Sbjct: 5 KASSSHKATDRRTSKKFKYDKGHLVKAELQKLDPKSDISSLPKVAPVAP----CENKFAE 60
Query: 405 XPGEEVAGLPPGHRRASTDTCXXXXXXXXXXXXXXXLSSGESDGGGPTQ--DGAVLDAER 578
E +P R C LS+ S + D + AE
Sbjct: 61 DSAEAAVSVP--ESREPPQGCSTPASEEPSVKAENGLSTEPSSAAAAQEPDDSSAGQAEP 118
Query: 579 -------GTPALQLDTSVLLDDDSNQPMPVSRFFGNVELMQDLPPASSSCPSMSRREFRK 737
LQ+D+S+ LDDDSNQPMPVSRFFGNVELMQDLPPASSS PSMSRREFRK
Sbjct: 119 VPRTEEVRASVLQMDSSIFLDDDSNQPMPVSRFFGNVELMQDLPPASSSYPSMSRREFRK 178
Query: 738 MHFRAK 755
MHFRAK
Sbjct: 179 MHFRAK 184
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,453,155
Number of extensions: 786560
Number of successful extensions: 3473
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3469
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013882
(1008 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_997239.2| hypothetical protein LOC339448 [Homo sapiens]. 179 4e-45
>ref|NP_997239.2| hypothetical protein LOC339448 [Homo sapiens].
Length = 243
Score = 179 bits (454), Expect = 4e-45
Identities = 105/214 (49%), Positives = 122/214 (57%), Gaps = 12/214 (5%)
Frame = +3
Query: 186 QEARVTTSARTACQTAASHRAPDRRTSKKFKHDRGHLGKSELQKLVPQSDGTTVPAESPR 365
QE +TSA+TAC T++SH+A D RTSKKFK D+GHL KSELQKLVP++D ++P +P
Sbjct: 30 QEVAGSTSAKTACLTSSSHKATDTRTSKKFKCDKGHLVKSELQKLVPKNDSASLPKVTPE 89
Query: 366 GPEPXXXXXXXXXXPGEEV--------AGLPPGHRRASTDTCXXXXXXXXXXXXXXXLSS 521
P PG E A LP G R +D+ S
Sbjct: 90 TPCENEFAEGSALLPGSEAGVSVQQGAASLPLGGCRVVSDSRLAKTRDGLSVPKHSAGSG 149
Query: 522 GESDGGGPT----QDGAVLDAERGTPALQLDTSVLLDDDSNQPMPVSRFFGNVELMQDLP 689
E T + + + P LQ+D SV LDDDSNQPMPVSRFFGNVELMQDLP
Sbjct: 150 AEESNSSSTVQKQNEPGLQTEDVQKPPLQMDNSVFLDDDSNQPMPVSRFFGNVELMQDLP 209
Query: 690 PASSSCPSMSRREFRKMHFRAKXXXXXXXXXAEM 791
PASSSCPSMSRREFRKMHFRAK AEM
Sbjct: 210 PASSSCPSMSRREFRKMHFRAKDDDDDDDDDAEM 243
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,274,561
Number of extensions: 958987
Number of successful extensions: 4505
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4501
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013882
(1008 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 890 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 890 bits (449), Expect = 0.0
Identities = 455/457 (99%)
Strand = Plus / Plus
Query: 225 cagaccgccgcctcacacagagcccccgacaggcggacctccaagaagttcaagcacgac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60035842 cagaccgccgcctcacacagagcccccgacaggcggacctccaagaagttcaagcacgac 60035901
Query: 285 agaggtcaccttgggaaatcagaattacagaaactagtcccccagagtgatggcaccacc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60035902 agaggtcaccttgggaaatcagaattacagaaactagtcccccagagtgatggcaccacc 60035961
Query: 345 gtgcccgctgagagcccacgtggacctgagcctctggccttggccaaggccagtgcactg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60035962 gtgcccgctgagagcccacgtggacctgagcctctggccttggccaaggccagtgcactg 60036021
Query: 405 ctcccgggagaggaggtggcaggcctccccccgggacaccgcagagcctcaaccgacacg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60036022 ctcccgggagaggaggtggcaggcctccccccgggacaccgcagagcctcaaccgacacg 60036081
Query: 465 tgcccagcacagggtgctcacccgccggccccgccaagacccggggccctttcaagtggc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60036082 tgcccagcacagggtgctcacccgccggccccgccaagacccggggccctttcaagtggc 60036141
Query: 525 gagtctgatggcggtggccccacgcaggacggggcagtgctggacgcagagcggggcacg 584
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 60036142 gagtctgatggcggtggcctcacgcaggacggggcagtgctggaggcagagcggggcacg 60036201
Query: 585 cctgccctgcagctggacaccagcgtccttctggacgacgacagcaaccagcccatgcca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60036202 cctgccctgcagctggacaccagcgtccttctggacgacgacagcaaccagcccatgcca 60036261
Query: 645 gtgagccgcttctttggaaatgtggagctcatgcagg 681
|||||||||||||||||||||||||||||||||||||
Sbjct: 60036262 gtgagccgcttctttggaaatgtggagctcatgcagg 60036298
Score = 638 bits (322), Expect = e-180
Identities = 328/330 (99%)
Strand = Plus / Plus
Query: 679 aggacctcccgccggcctcctcctcctgcccgtccatgagcaggcgggagttcaggaaga 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60036719 aggacctcccgccggcctcctcctcctgcccgtccatgagcaggcgggagttcaggaaga 60036778
Query: 739 tgcatttcagagccaaggacgatgacgaggacgatggcgacgatgcagaaatgtagggac 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60036779 tgcatttcagagccaaggacgatgacgaggacgatggcgacgatgcagaaatgtagggac 60036838
Query: 799 ggccccacggcgactcctgggctcttgagttcagctcacagtcgacagtgcagctggtta 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60036839 ggccccacggcgactcctgggctcttgagttcagctcacagtcgacagtgcagctggtta 60036898
Query: 859 cgggatttatacagaatttgtctctgagagcgaaactgcagaactgccccgcgcgaggct 918
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60036899 cgggatttatacagaatttgtctctgagagcgaaactgcagaactgccccgcgcgaggcc 60036958
Query: 919 gccgcgcagaccccgcctgcctgtgggagactggctccggtgaacccaggaccttcgcgt 978
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 60036959 gccgcgcagaccccgcctgcctgtgggagactggctccggtgaaccaaggaccttcgcgt 60037018
Query: 979 ggcaagcagctcgttccaggtgatgtattt 1008
||||||||||||||||||||||||||||||
Sbjct: 60037019 ggcaagcagctcgttccaggtgatgtattt 60037048
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 1 gtcatacgccgcggcgcgagccgagaacggcggggtcgctgctcccttggagagcgttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60030401 gtcatacgccgcggcgcgagccgagaacggcggggtcgctgctcccttggagagcgttgg 60030460
Query: 61 gcagggtgcagggccttggcggcggggctgggggcggcagcgcgccgctcacactcatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60030461 gcagggtgcagggccttggcggcggggctgggggcggcagcgcgccgctcacactcatga 60030520
Query: 121 ggagccggaag 131
|||||||||||
Sbjct: 60030521 ggagccggaag 60030531
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 130 agctcgcaggtgcagtgcggtcctcggcgcgcctccgagcccggagctgcttggcccagg 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60035016 agctcgcaggtgcagtgcggtcctcggcgcgcctccgagcccggagctgcttggcccagg 60035075
Query: 190 aagcccgcgtcaccacgtccgctcggacggcatgtcag 227
||||||||||||||||||||||||||||||||||||||
Sbjct: 60035076 aagcccgcgtcaccacgtccgctcggacggcatgtcag 60035113
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,032,355
Number of extensions: 144
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 4
Length of query: 1008
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 987
Effective length of database: 2,808,413,156
Effective search space: 2771903784972
Effective search space used: 2771903784972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)