Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013889
(953 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851479.1| PREDICTED: similar to carbonic anhydrase VA, mi... 278 4e-75
Alignment gi|XP_543579.2| PREDICTED: similar to carbonic anhydrase VB, mi... 256 2e-68
Alignment gi|XP_546892.2| PREDICTED: similar to Carbonic anhydrase VII (C... 163 2e-40
Alignment gi|XP_544159.1| PREDICTED: similar to Carbonic anhydrase XIII (... 152 6e-37
Alignment gi|NP_001138644.1| carbonic anhydrase 3 [Canis lupus familiaris]. 146 2e-35
Alignment gi|NP_001138642.1| carbonic anhydrase 2 [Canis lupus familiaris]. 144 9e-35
Alignment gi|NP_001138643.1| carbonic anhydrase 1 [Canis lupus familiaris]. 139 3e-33
Alignment gi|XP_544094.2| PREDICTED: similar to carbonic anhydrase VIII [... 109 4e-24
Alignment gi|XP_866337.1| PREDICTED: similar to Carbonic anhydrase-relate... 85 9e-17
Alignment gi|XP_852779.1| PREDICTED: similar to Carbonic anhydrase-relate... 85 9e-17
>ref|XP_851479.1| PREDICTED: similar to carbonic anhydrase VA, mitochondrial
precursor [Canis familiaris].
Length = 295
Score = 278 bits (712), Expect = 4e-75
Identities = 127/161 (78%), Positives = 140/161 (86%)
Frame = +2
Query: 299 HPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDD 478
HPLWK AS PGGTR SPINIRWRDSVYDPRL+ L VSY A SCLHVWNTGY QVEFDD
Sbjct: 35 HPLWKGLASVPGGTRQSPINIRWRDSVYDPRLKSLQVSYAATSCLHVWNTGYFFQVEFDD 94
Query: 479 STDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYR 658
ST+ SGISGGPLEN YRLKQFHFHWGA + WGSEHTV+D AYPAELHLVHWN+VKYQNY+
Sbjct: 95 STEGSGISGGPLENHYRLKQFHFHWGAANAWGSEHTVDDRAYPAELHLVHWNSVKYQNYK 154
Query: 659 EAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHKAGK 781
EA GE+G+AVIGVFL+LGA HE LQ+L+EVLP+IKHK +
Sbjct: 155 EAIMGENGVAVIGVFLQLGAHHEGLQKLVEVLPEIKHKGAR 195
>ref|XP_543579.2| PREDICTED: similar to carbonic anhydrase VB, mitochondrial
precursor [Canis familiaris].
Length = 317
Score = 256 bits (654), Expect = 2e-68
Identities = 118/190 (62%), Positives = 138/190 (72%)
Frame = +2
Query: 203 RQRWGTLPGHWLRPERWCVQAPCGPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVY 382
R W P R C C + RN A+HPLW+ P G R SPINIRWRDSV+
Sbjct: 17 RSLWRRFQIPTFMPARPCSLYTCTYKTRNRALHPLWESVDLVPVGERQSPINIRWRDSVF 76
Query: 383 DPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAV 562
DP L+PL++SYD +CLHVWN GY VEF+DSTD S I GGPLE+ YRLKQFHFHWGA+
Sbjct: 77 DPALKPLTISYDPTTCLHVWNNGYSFLVEFEDSTDKSVIKGGPLEDNYRLKQFHFHWGAI 136
Query: 563 DEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQEL 742
D WGSEHTV+ YPAELHLVHWNAVK++N+ +AA EHGLAVIGVFLKLG H+ LQ+L
Sbjct: 137 DAWGSEHTVDSKCYPAELHLVHWNAVKFENFEDAALEEHGLAVIGVFLKLGKHHQELQKL 196
Query: 743 LEVLPDIKHK 772
++ LP IKHK
Sbjct: 197 VDTLPSIKHK 206
>ref|XP_546892.2| PREDICTED: similar to Carbonic anhydrase VII (Carbonate dehydratase
VII) (CA-VII) [Canis familiaris].
Length = 278
Score = 163 bits (413), Expect = 2e-40
Identities = 79/175 (45%), Positives = 107/175 (61%)
Frame = +2
Query: 257 VQAPCGPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLH 436
+QA P A W G R SPINI +VY P L+PL +SY+A L
Sbjct: 15 IQASLSPSLSTPAGPSQWHKLYPIAQGDRQSPINIVSSQAVYSPSLKPLELSYEACISLS 74
Query: 437 VWNTGYLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAEL 616
+ N G+ +QV+F+DS D + ++GGPL+ PYRLKQ HFHWG GSEHTV+ ++P+EL
Sbjct: 75 ITNNGHSVQVDFNDSDDRTAVTGGPLDGPYRLKQLHFHWGKKHSVGSEHTVDGKSFPSEL 134
Query: 617 HLVHWNAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHKAGK 781
HLVHWNA KY + EAA+ GLAV+G+FL+ G H ++ L + L ++ K K
Sbjct: 135 HLVHWNAKKYSTFGEAASAPDGLAVVGIFLETGDEHPSMNRLTDALYMVRFKGTK 189
>ref|XP_544159.1| PREDICTED: similar to Carbonic anhydrase XIII (Carbonate
dehydratase XIII) (CA-XIII) [Canis familiaris].
Length = 279
Score = 152 bits (383), Expect = 6e-37
Identities = 71/146 (48%), Positives = 99/146 (67%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPL 514
G + SPI I+ ++ YD L+PLS+ YDA S + N+G+ V+FDD+ D S + GGPL
Sbjct: 43 GDQQSPIEIKTKEVKYDSSLRPLSIKYDANSAKIISNSGHSFSVDFDDTEDKSVLRGGPL 102
Query: 515 ENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVI 694
YRL+QFH HWG+ D+ GSEH V+ Y AELH+VHWN+ KY ++ EAA GLAV+
Sbjct: 103 TGSYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHVVHWNSDKYPSFVEAAHEPDGLAVL 162
Query: 695 GVFLKLGARHEALQELLEVLPDIKHK 772
GVFL++G + LQ++ ++L IK K
Sbjct: 163 GVFLQIGEHNSQLQKITDILDSIKEK 188
>ref|NP_001138644.1| carbonic anhydrase 3 [Canis lupus familiaris].
Length = 260
Score = 146 bits (369), Expect = 2e-35
Identities = 74/155 (47%), Positives = 91/155 (58%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W + G SPI + +D +DP L P S SYD SC + N G +V FDD+ D
Sbjct: 16 WHELYPIAKGDNQSPIELHTKDIRHDPSLLPWSASYDPGSCKTILNNGKTCRVVFDDTYD 75
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GGPL PYRL+QFH HWGA D+ GSEHTV+ Y AELHLVHWN KY Y EA
Sbjct: 76 RSMLRGGPLTGPYRLRQFHLHWGASDDHGSEHTVDGVKYAAELHLVHWNP-KYNTYGEAL 134
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
G+AV+G+FLK+G Q L+ L +K K
Sbjct: 135 KQPDGIAVVGIFLKIGREKGEFQLFLDALDKVKTK 169
>ref|NP_001138642.1| carbonic anhydrase 2 [Canis lupus familiaris].
Length = 260
Score = 144 bits (364), Expect = 9e-35
Identities = 76/167 (45%), Positives = 98/167 (58%)
Frame = +2
Query: 272 GPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTG 451
G + N H W G R SP++I + +V+DP L+ L YD A + N G
Sbjct: 6 GYAKHNGPEH--WHKDFPIAKGERQSPVDIDTKAAVHDPALKSLCPCYDQAVSQRIINNG 63
Query: 452 YLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHW 631
+ VEFDDS D + + GGPL YRL QFHFHWG+ D GSEHTV+ Y AELHLVHW
Sbjct: 64 HSFNVEFDDSQDKTVLKGGPLTGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHW 123
Query: 632 NAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
N KY + +A GLAV+G+FLK+G + LQ++L+ L IK K
Sbjct: 124 N-TKYGEFGKAVQQPDGLAVLGIFLKIGGANPGLQKILDALDSIKTK 169
>ref|NP_001138643.1| carbonic anhydrase 1 [Canis lupus familiaris].
Length = 261
Score = 139 bits (351), Expect = 3e-33
Identities = 63/146 (43%), Positives = 95/146 (65%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPL 514
G SPI+I+ ++ +D L+P+SVSY+ A+ + N G+ V ++D D S + GGPL
Sbjct: 26 GNNQSPIDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHVNYEDHDDRSVLKGGPL 85
Query: 515 ENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVI 694
YRL QFHFHWG+ +++GSEHTV+ Y ELH+VHWN+ KY ++ EA + GLA+I
Sbjct: 86 SASYRLSQFHFHWGSTNDYGSEHTVDGVKYSGELHIVHWNSSKYSSFAEAVSQADGLAII 145
Query: 695 GVFLKLGARHEALQELLEVLPDIKHK 772
V +K+ + LQ++L+ L +K K
Sbjct: 146 AVLMKIDQANPKLQKVLDALNAVKTK 171
>ref|XP_544094.2| PREDICTED: similar to carbonic anhydrase VIII [Canis familiaris].
Length = 290
Score = 109 bits (272), Expect = 4e-24
Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASC--LHVWNTGYLLQVEFDDSTDWSGISGG 508
G SPIN+ R++ YDP L + +S + C V N G+ +QV S +SGG
Sbjct: 46 GEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKSK---SVLSGG 102
Query: 509 PLE--NPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHG 682
PL + + L + FHWG ++ GSEHTV A+P ELHL+HWN+ + + EA HG
Sbjct: 103 PLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGKPHG 162
Query: 683 LAVIGVFLKLGARHEALQELLEVLPDIKHK 772
+A+I +F+++G H L+ + E+L DI++K
Sbjct: 163 IAIIALFVQIGKEHVGLKAVTEILQDIQYK 192
>ref|XP_866337.1| PREDICTED: similar to Carbonic anhydrase-related protein 10
(Carbonic anhydrase-related protein X) (CARP X) (CA-RP
X) isoform 4 [Canis familiaris].
Length = 328
Score = 85.1 bits (209), Expect = 9e-17
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLH-VWNTGYLLQVEFDDSTDWSGISGGP 511
G R SP+NI ++DP L PL ++ ++NTG + + D ISGGP
Sbjct: 63 GKRQSPVNIETSHMIFDPFLTPLRINTGGRKVSGTMYNTGRHVSLRLDKE-HLVNISGGP 121
Query: 512 LENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAV 691
+ +RL++ H+G+ D GSEH + A+ E+ L+H+N Y N EAA +GL V
Sbjct: 122 MTYSHRLEEIRLHFGSEDSQGSEHLLNGQAFSGEVQLIHYNHELYTNVTEAAKSPNGLVV 181
Query: 692 IGVFLKL 712
+ +F+K+
Sbjct: 182 VSIFIKV 188
>ref|XP_852779.1| PREDICTED: similar to Carbonic anhydrase-related protein 10
(Carbonic anhydrase-related protein X) (CARP X) (CA-RP
X) isoform 2 [Canis familiaris].
Length = 328
Score = 85.1 bits (209), Expect = 9e-17
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLH-VWNTGYLLQVEFDDSTDWSGISGGP 511
G R SP+NI ++DP L PL ++ ++NTG + + D ISGGP
Sbjct: 63 GKRQSPVNIETSHMIFDPFLTPLRINTGGRKVSGTMYNTGRHVSLRLDKE-HLVNISGGP 121
Query: 512 LENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAV 691
+ +RL++ H+G+ D GSEH + A+ E+ L+H+N Y N EAA +GL V
Sbjct: 122 MTYSHRLEEIRLHFGSEDSQGSEHLLNGQAFSGEVQLIHYNHELYTNVTEAAKSPNGLVV 181
Query: 692 IGVFLKL 712
+ +F+K+
Sbjct: 182 VSIFIKV 188
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,328,428
Number of extensions: 1364075
Number of successful extensions: 9005
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 8827
Number of HSP's successfully gapped: 22
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013889
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013889
(953 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179338.1| carbonic anhydrase 5A, mitochondrial [Bos ta... 345 3e-95
Alignment gi|XP_002694807.1| PREDICTED: carbonic anhydrase VA, mitochondr... 345 3e-95
Alignment gi|NP_001074377.2| carbonic anhydrase 5B, mitochondrial [Bos ta... 251 7e-67
Alignment gi|NP_001179451.1| carbonic anhydrase 7 [Bos taurus]. 164 1e-40
Alignment gi|XP_002694851.1| PREDICTED: carbonic anhydrase VII-like [Bos ... 164 1e-40
Alignment gi|XP_002692875.1| PREDICTED: carbonic anhydrase XIII [Bos taur... 153 2e-37
Alignment gi|NP_001068934.1| carbonic anhydrase 1 [Bos taurus]. 149 5e-36
Alignment gi|XP_002692874.1| PREDICTED: carbonic anhydrase 1-like [Bos ta... 149 5e-36
Alignment gi|XP_001250684.1| PREDICTED: carbonic anhydrase 1-like [Bos ta... 149 5e-36
Alignment gi|NP_848667.1| carbonic anhydrase 2 [Bos taurus]. 144 9e-35
>ref|NP_001179338.1| carbonic anhydrase 5A, mitochondrial [Bos taurus].
Length = 310
Score = 345 bits (885), Expect = 3e-95
Identities = 159/211 (75%), Positives = 176/211 (83%)
Frame = +2
Query: 140 MLRAPLSCRGHVTSSAFSGLVRQRWGTLPGHWLRPERWCVQAPCGPRRRNNAVHPLWKDP 319
M+R P+ H+ SS S L +Q WGTL H LRP RWC Q PC RRRN+A+HP+WK P
Sbjct: 1 MVRPPVLGWSHLKSSGLSLLAKQIWGTLRSHLLRPARWCSQVPCAQRRRNDALHPVWKGP 60
Query: 320 ASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGI 499
AS PGGTR SPINIRWRDSVYDP+LQPL VSY+A +CL+VWNTGYL QVEFDDST+ SGI
Sbjct: 61 ASVPGGTRQSPINIRWRDSVYDPQLQPLGVSYNAEACLYVWNTGYLFQVEFDDSTEGSGI 120
Query: 500 SGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEH 679
SGGPLEN YRLKQFHFHWGAV+EWGSEHTV+D YPAELHLVHWNAVKYQNY +A TG
Sbjct: 121 SGGPLENHYRLKQFHFHWGAVNEWGSEHTVDDRVYPAELHLVHWNAVKYQNYTDAVTGAD 180
Query: 680 GLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
GLAV+GVFLKLGARHE LQEL+ VLPDIKHK
Sbjct: 181 GLAVVGVFLKLGARHEELQELVAVLPDIKHK 211
>ref|XP_002694807.1| PREDICTED: carbonic anhydrase VA, mitochondrial-like [Bos taurus].
Length = 310
Score = 345 bits (885), Expect = 3e-95
Identities = 159/211 (75%), Positives = 176/211 (83%)
Frame = +2
Query: 140 MLRAPLSCRGHVTSSAFSGLVRQRWGTLPGHWLRPERWCVQAPCGPRRRNNAVHPLWKDP 319
M+R P+ H+ SS S L +Q WGTL H LRP RWC Q PC RRRN+A+HP+WK P
Sbjct: 1 MVRPPVLGWSHLKSSGLSLLAKQIWGTLRSHLLRPARWCSQVPCAQRRRNDALHPVWKGP 60
Query: 320 ASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGI 499
AS PGGTR SPINIRWRDSVYDP+LQPL VSY+A +CL+VWNTGYL QVEFDDST+ SGI
Sbjct: 61 ASVPGGTRQSPINIRWRDSVYDPQLQPLGVSYNAEACLYVWNTGYLFQVEFDDSTEGSGI 120
Query: 500 SGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEH 679
SGGPLEN YRLKQFHFHWGAV+EWGSEHTV+D YPAELHLVHWNAVKYQNY +A TG
Sbjct: 121 SGGPLENHYRLKQFHFHWGAVNEWGSEHTVDDRVYPAELHLVHWNAVKYQNYTDAVTGAD 180
Query: 680 GLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
GLAV+GVFLKLGARHE LQEL+ VLPDIKHK
Sbjct: 181 GLAVVGVFLKLGARHEELQELVAVLPDIKHK 211
>ref|NP_001074377.2| carbonic anhydrase 5B, mitochondrial [Bos taurus].
Length = 317
Score = 251 bits (641), Expect = 7e-67
Identities = 113/177 (63%), Positives = 135/177 (76%)
Frame = +2
Query: 242 PERWCVQAPCGPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDA 421
P R C C + RN +HPLW+ +P G R SPINIRW+DSVYDP LQPL++SYD
Sbjct: 30 PARPCSLYTCTYKSRNRVLHPLWEKVDLAPAGERQSPINIRWKDSVYDPGLQPLTISYDP 89
Query: 422 ASCLHVWNTGYLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHA 601
+CLHVWN GY VEF+DS D S I GGPLE+ YRLKQFHFHWGA+D WGSEHTV+
Sbjct: 90 TTCLHVWNNGYSFLVEFEDSADKSVIEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKC 149
Query: 602 YPAELHLVHWNAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
YPAELHLVHWNAVK++++ +AA E+GLAVIGVFLKLG H+ LQ+L+ +LP IKHK
Sbjct: 150 YPAELHLVHWNAVKFEHFEDAALEENGLAVIGVFLKLGKHHKELQKLVNILPSIKHK 206
>ref|NP_001179451.1| carbonic anhydrase 7 [Bos taurus].
Length = 264
Score = 164 bits (414), Expect = 1e-40
Identities = 76/149 (51%), Positives = 103/149 (69%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPL 514
G R SPINI +VY P L+PL +SY++ + L + N G+ +QV+F+DS D + +SGGPL
Sbjct: 27 GDRQSPINIVSSQAVYSPSLKPLEISYESCTSLSIANNGHSVQVDFNDSDDRTVVSGGPL 86
Query: 515 ENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVI 694
+ PYRLKQFHFHWG GSEHTV+ ++P+ELHLVHWNA KY + EAA+ GLAV+
Sbjct: 87 DGPYRLKQFHFHWGKKHGVGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVV 146
Query: 695 GVFLKLGARHEALQELLEVLPDIKHKAGK 781
GVFL+ G H ++ L + L ++ K K
Sbjct: 147 GVFLETGDEHPSMNRLTDALYMVRFKGTK 175
>ref|XP_002694851.1| PREDICTED: carbonic anhydrase VII-like [Bos taurus].
Length = 264
Score = 164 bits (414), Expect = 1e-40
Identities = 76/149 (51%), Positives = 103/149 (69%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPL 514
G R SPINI +VY P L+PL +SY++ + L + N G+ +QV+F+DS D + +SGGPL
Sbjct: 27 GDRQSPINIVSSQAVYSPSLKPLEISYESCTSLSIANNGHSVQVDFNDSDDRTVVSGGPL 86
Query: 515 ENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVI 694
+ PYRLKQFHFHWG GSEHTV+ ++P+ELHLVHWNA KY + EAA+ GLAV+
Sbjct: 87 DGPYRLKQFHFHWGKKHGVGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVV 146
Query: 695 GVFLKLGARHEALQELLEVLPDIKHKAGK 781
GVFL+ G H ++ L + L ++ K K
Sbjct: 147 GVFLETGDEHPSMNRLTDALYMVRFKGTK 175
>ref|XP_002692875.1| PREDICTED: carbonic anhydrase XIII [Bos taurus].
Length = 262
Score = 153 bits (386), Expect = 2e-37
Identities = 74/167 (44%), Positives = 106/167 (63%)
Frame = +2
Query: 272 GPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTG 451
G R+ VH W + G + SPI I+ ++ YD L+PL + YDA+S + N+G
Sbjct: 7 GYGERDGPVH--WNEFFPIADGDQQSPIEIKTKEVRYDSSLRPLGIKYDASSAKIISNSG 64
Query: 452 YLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHW 631
+ V+FDD+ D S + GGPL YRL+QFH HWG+ D+ GSEH V+ Y AELH+VHW
Sbjct: 65 HSFNVDFDDTDDKSVLRGGPLTGSYRLRQFHLHWGSTDDHGSEHVVDGVRYAAELHVVHW 124
Query: 632 NAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
N+ KY ++ EAA GLAV+G+FL++G + LQ++ ++L IK K
Sbjct: 125 NSDKYPSFVEAAHEPDGLAVLGIFLQIGEHNPQLQKITDILDSIKEK 171
>ref|NP_001068934.1| carbonic anhydrase 1 [Bos taurus].
Length = 261
Score = 149 bits (375), Expect = 5e-36
Identities = 70/149 (46%), Positives = 100/149 (67%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPL 514
G SPI+I+ ++ DP L+PLSVSY+ A+ + N G+ V F+DS + S + GGPL
Sbjct: 26 GNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVNVGHSFHVNFEDSDNRSVLKGGPL 85
Query: 515 ENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVI 694
YRL+QFHFHWG D+ GSEH V+ + AELHLVHWN+ KY ++ +AA+ GLA+I
Sbjct: 86 SESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLVHWNSAKYPSFADAASQADGLALI 145
Query: 695 GVFLKLGARHEALQELLEVLPDIKHKAGK 781
GV +K+G + LQ++L+ L +K+K K
Sbjct: 146 GVLVKVGQANPNLQKVLDALKAVKNKNKK 174
>ref|XP_002692874.1| PREDICTED: carbonic anhydrase 1-like [Bos taurus].
Length = 261
Score = 149 bits (375), Expect = 5e-36
Identities = 70/149 (46%), Positives = 100/149 (67%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPL 514
G SPI+I+ ++ DP L+PLSVSY+ A+ + N G+ V F+DS + S + GGPL
Sbjct: 26 GNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVNVGHSFHVNFEDSDNRSVLKGGPL 85
Query: 515 ENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVI 694
YRL+QFHFHWG D+ GSEH V+ + AELHLVHWN+ KY ++ +AA+ GLA+I
Sbjct: 86 SESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLVHWNSAKYPSFADAASKADGLALI 145
Query: 695 GVFLKLGARHEALQELLEVLPDIKHKAGK 781
GV +K+G + LQ++L+ L +K+K K
Sbjct: 146 GVLVKVGQANPNLQKVLDALKAVKNKNKK 174
>ref|XP_001250684.1| PREDICTED: carbonic anhydrase 1-like [Bos taurus].
Length = 261
Score = 149 bits (375), Expect = 5e-36
Identities = 70/149 (46%), Positives = 100/149 (67%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPL 514
G SPI+I+ ++ DP L+PLSVSY+ A+ + N G+ V F+DS + S + GGPL
Sbjct: 26 GNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVNVGHSFHVNFEDSDNRSVLKGGPL 85
Query: 515 ENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVI 694
YRL+QFHFHWG D+ GSEH V+ + AELHLVHWN+ KY ++ +AA+ GLA+I
Sbjct: 86 SESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLVHWNSAKYPSFADAASKADGLALI 145
Query: 695 GVFLKLGARHEALQELLEVLPDIKHKAGK 781
GV +K+G + LQ++L+ L +K+K K
Sbjct: 146 GVLVKVGQANPNLQKVLDALKAVKNKNKK 174
>ref|NP_848667.1| carbonic anhydrase 2 [Bos taurus].
Length = 260
Score = 144 bits (364), Expect = 9e-35
Identities = 77/167 (46%), Positives = 101/167 (60%)
Frame = +2
Query: 272 GPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTG 451
G + N H W G R SP++I + V DP L+PL++ Y A+ + N G
Sbjct: 6 GYGKHNGPEH--WHKDFPIANGERQSPVDIDTKAVVQDPALKPLALVYGEATSRRMVNNG 63
Query: 452 YLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHW 631
+ VE+DDS D + + GPL YRL QFHFHWG+ D+ GSEHTV+ Y AELHLVHW
Sbjct: 64 HSFNVEYDDSQDKAVLKDGPLTGTYRLVQFHFHWGSSDDQGSEHTVDRKKYAAELHLVHW 123
Query: 632 NAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
N KY ++ AA GLAV+GVFLK+G + ALQ++L+ L IK K
Sbjct: 124 N-TKYGDFGTAAQQPDGLAVVGVFLKVGDANPALQKVLDALDSIKTK 169
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,653,599
Number of extensions: 1340273
Number of successful extensions: 8585
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 8436
Number of HSP's successfully gapped: 27
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013889
(953 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926850.1| PREDICTED: carbonic anhydrase 5B, mitochondr... 249 1e-66
Alignment gi|XP_001924497.2| PREDICTED: carbonic anhydrase 13 [Sus scrofa]. 154 9e-38
Alignment gi|XP_001927840.1| PREDICTED: carbonic anhydrase 2 [Sus scrofa]. 151 4e-37
Alignment gi|XP_001924218.1| PREDICTED: carbonic anhydrase 1 [Sus scrofa]. 146 1e-35
Alignment gi|XP_003355077.1| PREDICTED: carbonic anhydrase 3-like [Sus sc... 141 6e-34
Alignment gi|NP_001008688.1| carbonic anhydrase 3 [Sus scrofa]. 135 3e-32
Alignment gi|XP_001926916.1| PREDICTED: carbonic anhydrase-related protei... 109 3e-24
Alignment gi|XP_003131649.2| PREDICTED: carbonic anhydrase-related protei... 85 5e-17
Alignment gi|XP_001924916.3| PREDICTED: carbonic anhydrase 14-like [Sus s... 77 1e-14
Alignment gi|NP_001137588.1| carbonic anhydrase 6 [Sus scrofa]. 76 3e-14
>ref|XP_001926850.1| PREDICTED: carbonic anhydrase 5B, mitochondrial-like [Sus scrofa].
Length = 317
Score = 249 bits (637), Expect = 1e-66
Identities = 113/175 (64%), Positives = 134/175 (76%)
Frame = +2
Query: 248 RWCVQAPCGPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAAS 427
R C C + RN +HPLW+ P G R SPINIRWRDSVYDP L+PL++SYD +
Sbjct: 32 RPCSLYTCTYKTRNRDLHPLWESADLVPAGERQSPINIRWRDSVYDPGLKPLTISYDPTT 91
Query: 428 CLHVWNTGYLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYP 607
CLHVWN GY VEF+DSTD S I GGPLE+ YRLKQFHFHWGA+D WGSEHTV+ YP
Sbjct: 92 CLHVWNNGYSFLVEFEDSTDKSVIEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYP 151
Query: 608 AELHLVHWNAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
AELHLVHWNAVK++N+ +AA E+GLAVIGVFLKLG H+ +Q+L++ LP IKHK
Sbjct: 152 AELHLVHWNAVKFENFEDAAQEENGLAVIGVFLKLGKHHKEVQKLVDTLPSIKHK 206
>ref|XP_001924497.2| PREDICTED: carbonic anhydrase 13 [Sus scrofa].
Length = 243
Score = 154 bits (388), Expect = 9e-38
Identities = 75/167 (44%), Positives = 105/167 (62%)
Frame = +2
Query: 272 GPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTG 451
G N VH W + G + SPI I+ ++ YD L+PLS+ YD +S + N+G
Sbjct: 7 GYGEHNGPVH--WNEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSG 64
Query: 452 YLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHW 631
+ V+FDD+ D S + GGPL YRL+QFH HWG+ D+ GSEH V+ Y AELH+VHW
Sbjct: 65 HSFSVDFDDTEDKSVLRGGPLTGSYRLRQFHLHWGSADDHGSEHVVDGVKYAAELHVVHW 124
Query: 632 NAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
N+ KY ++ EAA GLAV+GVFL++G + LQ++ ++L IK K
Sbjct: 125 NSDKYPSFVEAAHEPDGLAVLGVFLQIGEHNSQLQKITDILDSIKEK 171
>ref|XP_001927840.1| PREDICTED: carbonic anhydrase 2 [Sus scrofa].
Length = 260
Score = 151 bits (382), Expect = 4e-37
Identities = 79/167 (47%), Positives = 102/167 (61%)
Frame = +2
Query: 272 GPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTG 451
G + N H W G R SP++I +V+DP L+PLS+ Y+ A+ + N G
Sbjct: 6 GYDKHNGPEH--WHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNG 63
Query: 452 YLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHW 631
+ VEFD S D + GGPL YRL QFHFHWG+ D GSEHTV+ Y AELHLVHW
Sbjct: 64 HSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHW 123
Query: 632 NAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
N KY+++ EAA GLAV+GVFLK+G LQ++++VL IK K
Sbjct: 124 N-TKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTK 169
>ref|XP_001924218.1| PREDICTED: carbonic anhydrase 1 [Sus scrofa].
Length = 261
Score = 146 bits (369), Expect = 1e-35
Identities = 69/158 (43%), Positives = 99/158 (62%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W G SPI+I+ ++ +D L+P+SVSY+ A+ + N G+ V F+D+ +
Sbjct: 17 WSKVYPIANGNNQSPIDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHVNFEDNDN 76
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GPL YRL QFHFHWG D++GSEH V+ Y AELH+VHWN+ KY + EAA
Sbjct: 77 RSVLKDGPLSESYRLLQFHFHWGKTDDYGSEHLVDGAKYSAELHIVHWNSAKYSSAAEAA 136
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHKAGK 781
+ GLA+IGV +K+G + LQ++L+ L IK+K K
Sbjct: 137 SHADGLAIIGVLVKVGQANPNLQKVLDALKGIKYKGKK 174
>ref|XP_003355077.1| PREDICTED: carbonic anhydrase 3-like [Sus scrofa].
Length = 260
Score = 141 bits (355), Expect = 6e-34
Identities = 73/167 (43%), Positives = 98/167 (58%)
Frame = +2
Query: 272 GPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTG 451
G + N H W G R SP++I +V+DP L+PLS+ Y+ A+ + N G
Sbjct: 6 GYDKHNGPEH--WHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNG 63
Query: 452 YLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHW 631
+ VEFD S D + GGPL YRL+QFH HWG+ D+ GSEHTV+ Y AELHLVHW
Sbjct: 64 HSFNVEFDSSQDKGVLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 123
Query: 632 NAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
N+ KY ++ A G+AV+G+FLK+G Q +L+ L IK K
Sbjct: 124 NS-KYNSFATALKHPDGVAVVGIFLKIGREKGEFQLVLDALDKIKTK 169
>ref|NP_001008688.1| carbonic anhydrase 3 [Sus scrofa].
Length = 260
Score = 135 bits (340), Expect = 3e-32
Identities = 69/155 (44%), Positives = 91/155 (58%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W + G SPI + +D +DP L P + SYD S + N G +V FDD+ D
Sbjct: 16 WHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGKTCRVVFDDTYD 75
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GGPL YRL+QFH HWG+ D+ GSEHTV+ Y AELHLVHWN+ KY ++ A
Sbjct: 76 RSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNS-KYNSFATAL 134
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
G+AV+G+FLK+G Q +L+ L IK K
Sbjct: 135 KHPDGVAVVGIFLKIGREKGEFQLVLDALDKIKTK 169
>ref|XP_001926916.1| PREDICTED: carbonic anhydrase-related protein-like [Sus scrofa].
Length = 291
Score = 109 bits (272), Expect = 3e-24
Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASC--LHVWNTGYLLQVEFDDSTDWSGISGG 508
G SPIN+ R++ YDP L + +S + C V N G+ +QV S +SGG
Sbjct: 47 GEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKSK---SVLSGG 103
Query: 509 PLE--NPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHG 682
PL + + L + FHWG ++ GSEHTV A+P ELHL+HWN+ + + EA HG
Sbjct: 104 PLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGKPHG 163
Query: 683 LAVIGVFLKLGARHEALQELLEVLPDIKHK 772
+A+I +F+++G H L+ + E+L DI++K
Sbjct: 164 IAIIALFVQIGKEHVGLKAVTEILQDIQYK 193
>ref|XP_003131649.2| PREDICTED: carbonic anhydrase-related protein 10-like [Sus scrofa].
Length = 328
Score = 85.1 bits (209), Expect = 5e-17
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLH-VWNTGYLLQVEFDDSTDWSGISGGP 511
G R SP+NI ++DP L PL ++ ++NTG + + D ISGGP
Sbjct: 63 GKRQSPVNIETSHMIFDPFLTPLRINTGGRKVSGTMYNTGRHVSLRLDKE-HLVNISGGP 121
Query: 512 LENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAV 691
+ +RL++ H+G+ D GSEH + A+ E+ L+H+N Y N EAA +GL V
Sbjct: 122 MTYSHRLEEIRLHFGSEDSQGSEHLLNGQAFSGEVQLIHYNHELYTNVTEAAKSPNGLVV 181
Query: 692 IGVFLKL 712
+ +F+K+
Sbjct: 182 VSIFIKV 188
>ref|XP_001924916.3| PREDICTED: carbonic anhydrase 14-like [Sus scrofa].
Length = 340
Score = 77.4 bits (189), Expect = 1e-14
Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 11/185 (5%)
Frame = +2
Query: 251 WCVQAPCGPRRRNNAVHPLWKDPASSP--GGTRPSPINIRWRDSVYDPRLQPLS---VSY 415
W + A G H PAS P G SPINI+ +DP L PL
Sbjct: 12 WILAAEDGQHWTYEGPHGQDHWPASYPECGSNAQSPINIQTDSVTFDPELLPLQPHGYEQ 71
Query: 416 DAASCLHVWNTGYL----LQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDE-WGSE 580
L + N G+ Q+ + G L Y Q H HWG GSE
Sbjct: 72 PGTEPLDLHNNGHTGKNAXQLSLPPTLHLEG-----LPRKYVAAQLHLHWGQKGSPGGSE 126
Query: 581 HTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVIGVFLKLG-ARHEALQELLEVLP 757
H + A AELH+VH+++ Y + EAA GLAV+G+ +++G + A + +L L
Sbjct: 127 HKINGEATAAELHIVHYDSESYASLSEAAQQPQGLAVLGILVEVGETENPAYEHILSHLH 186
Query: 758 DIKHK 772
+I+HK
Sbjct: 187 EIRHK 191
>ref|NP_001137588.1| carbonic anhydrase 6 [Sus scrofa].
Length = 317
Score = 75.9 bits (185), Expect = 3e-14
Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVS-YDAASC-LHVWNTGYLLQVEFDDS 481
W G R SPI+++ + Y+P L+ LS++ Y+A + N G+ +Q+ +
Sbjct: 35 WSREYPDCDGRRQSPIDVQRKSVQYNPALRALSLTGYEAQEGEFSMINNGHTVQISLPST 94
Query: 482 TDWSGISGGPLENPYRLKQFHFHWGAV--DEWGSEHTVEDHAYPAELHLVHWNAVKYQNY 655
+ G Y KQ HFHWG + GSEHT++ Y E+H+VH+N+ KY++Y
Sbjct: 95 MRLTAPDG----TQYIAKQMHFHWGGAFSEISGSEHTIDGIRYVTEVHVVHYNS-KYKSY 149
Query: 656 REAATGEHGLAVIGVFLKL 712
EA T GLAV+ ++
Sbjct: 150 DEAQTAPDGLAVLAALFEI 168
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,562,720
Number of extensions: 904416
Number of successful extensions: 5751
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5674
Number of HSP's successfully gapped: 17
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013889
(953 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031634.2| carbonic anhydrase 5A, mitochondrial precursor ... 276 2e-74
Alignment gi|NP_851832.2| carbonic anhydrase 5B, mitochondrial precursor ... 252 3e-67
Alignment gi|NP_444300.1| carbonic anhydrase 7 [Mus musculus]. 162 3e-40
Alignment gi|NP_078771.1| carbonic anhydrase 13 [Mus musculus]. 155 4e-38
Alignment gi|NP_033931.4| carbonic anhydrase 2 [Mus musculus]. 150 1e-36
Alignment gi|NP_031632.2| carbonic anhydrase 3 [Mus musculus]. 145 3e-35
Alignment gi|NP_001077426.1| carbonic anhydrase 1 [Mus musculus]. 144 8e-35
Alignment gi|NP_033929.2| carbonic anhydrase 1 [Mus musculus]. 144 8e-35
Alignment gi|NP_031618.2| carbonic anhydrase-related protein [Mus musculu... 108 5e-24
Alignment gi|NP_082572.1| carbonic anhydrase-related protein 10 [Mus musc... 85 7e-17
>ref|NP_031634.2| carbonic anhydrase 5A, mitochondrial precursor [Mus musculus].
Length = 299
Score = 276 bits (706), Expect = 2e-74
Identities = 123/177 (69%), Positives = 144/177 (81%)
Frame = +2
Query: 242 PERWCVQAPCGPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDA 421
P+RW Q C N A HPLW P SS GTR SPINI+W+DSVYDP+L PL VSYDA
Sbjct: 24 PQRWRFQHSCAEEHSNCARHPLWTGPVSSAEGTRQSPINIQWKDSVYDPQLAPLRVSYDA 83
Query: 422 ASCLHVWNTGYLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHA 601
ASC ++WNTGY QVEFDDS + SGISGGPL N YRLKQFHFHWGA DEWGSEH V+ H
Sbjct: 84 ASCRYLWNTGYFFQVEFDDSCEDSGISGGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHT 143
Query: 602 YPAELHLVHWNAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
YPAELHLVHWN+ KY+NY++A+ GE+GLAVIGVFLKLGA H+ALQ+L++VLP+++HK
Sbjct: 144 YPAELHLVHWNSTKYENYKKASVGENGLAVIGVFLKLGAHHQALQKLVDVLPEVRHK 200
>ref|NP_851832.2| carbonic anhydrase 5B, mitochondrial precursor [Mus musculus].
Length = 317
Score = 252 bits (644), Expect = 3e-67
Identities = 115/179 (64%), Positives = 138/179 (77%)
Frame = +2
Query: 236 LRPERWCVQAPCGPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSY 415
L P R C C R RN A+ PLW++ P G R SPINIRWRDSVYDP L+PL++SY
Sbjct: 28 LVPRRSCSLYTCTYRTRNRALPPLWENLDLVPAGDRQSPINIRWRDSVYDPGLKPLTISY 87
Query: 416 DAASCLHVWNTGYLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVED 595
D A+CLH+WN GY VEF+DSTD S + GGPLE+ YRLKQFHFHWGA+D WGSEHTV+
Sbjct: 88 DPATCLHIWNNGYSFLVEFEDSTDKSVVEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDS 147
Query: 596 HAYPAELHLVHWNAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
YPAELHLVHWNAVK++++ +AA E+GLAVIGVFLKLG H+ LQ+L++ LP IKHK
Sbjct: 148 KCYPAELHLVHWNAVKFESFEDAALEENGLAVIGVFLKLGKHHKELQKLVDTLPSIKHK 206
>ref|NP_444300.1| carbonic anhydrase 7 [Mus musculus].
Length = 264
Score = 162 bits (411), Expect = 3e-40
Identities = 77/149 (51%), Positives = 100/149 (67%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPL 514
G R SPINI +VY P LQPL + Y+A L + N G+ +QV+F+DS D + +SGGPL
Sbjct: 27 GDRQSPINIISSQAVYSPSLQPLELFYEACMSLSITNNGHSVQVDFNDSDDRTVVSGGPL 86
Query: 515 ENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVI 694
E PYRLKQ HFHWG + GSEHTV+ ++P+ELHLVHWNA KY + EAA GLAV+
Sbjct: 87 EGPYRLKQLHFHWGKKRDMGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAAAAPDGLAVV 146
Query: 695 GVFLKLGARHEALQELLEVLPDIKHKAGK 781
GVFL+ G H ++ L + L ++ K K
Sbjct: 147 GVFLETGDEHPSMNRLTDALYMVRFKDTK 175
>ref|NP_078771.1| carbonic anhydrase 13 [Mus musculus].
Length = 262
Score = 155 bits (392), Expect = 4e-38
Identities = 78/186 (41%), Positives = 110/186 (59%), Gaps = 8/186 (4%)
Frame = +2
Query: 272 GPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTG 451
G N +H W + G + SPI I+ ++ YD L+PLS+ YD AS + N+G
Sbjct: 7 GYGEHNGPIH--WNELFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPASAKIISNSG 64
Query: 452 YLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHW 631
+ V+FDD+ D S + GGPL YRL+QFH HWG+ D+ GSEH V+ Y AELH+VHW
Sbjct: 65 HSFNVDFDDTEDKSVLRGGPLTGNYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHVVHW 124
Query: 632 NAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHKAGK--------LC 787
N+ KY ++ EAA GLAV+GVFL++G + LQ++ ++L IK K + LC
Sbjct: 125 NSDKYPSFVEAAHESDGLAVLGVFLQIGEHNPQLQKITDILDSIKEKGKQTRFTNFDPLC 184
Query: 788 KIQRKW 805
+ W
Sbjct: 185 LLPSSW 190
>ref|NP_033931.4| carbonic anhydrase 2 [Mus musculus].
Length = 260
Score = 150 bits (380), Expect = 1e-36
Identities = 76/155 (49%), Positives = 97/155 (62%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W G R SP++I + +DP LQPL +SYD A+ + N G+ VEFDDS D
Sbjct: 16 WHKDFPIANGDRQSPVDIDTATAQHDPALQPLLISYDKAASKSIVNNGHSFNVEFDDSQD 75
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
+ + GGPL + YRL QFHFHWG+ D GSEHTV Y AELHLVHWN KY ++ +A
Sbjct: 76 NAVLKGGPLSDSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHLVHWN-TKYGDFGKAV 134
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
GLAV+G+FLK+G + LQ++LE L IK K
Sbjct: 135 QQPDGLAVLGIFLKIGPASQGLQKVLEALHSIKTK 169
>ref|NP_031632.2| carbonic anhydrase 3 [Mus musculus].
Length = 260
Score = 145 bits (367), Expect = 3e-35
Identities = 74/155 (47%), Positives = 92/155 (59%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W + G SPI + +D +DP LQP S SYD S + N G +V FDD+ D
Sbjct: 16 WHELYPIAKGDNQSPIELHTKDIKHDPSLQPWSASYDPGSAKTILNNGKTCRVVFDDTYD 75
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GGPL PYRL+QFH HWG+ D+ GSEHTV+ Y AELHLVHWN KY + EA
Sbjct: 76 RSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNP-KYNTFGEAL 134
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
G+AV+G+FLK+G Q LL+ L IK K
Sbjct: 135 KQPDGIAVVGIFLKIGREKGEFQILLDALDKIKTK 169
>ref|NP_001077426.1| carbonic anhydrase 1 [Mus musculus].
Length = 261
Score = 144 bits (364), Expect = 8e-35
Identities = 68/155 (43%), Positives = 99/155 (63%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W G SPI+I+ ++ +D L+PLS+SY+ A+ + N G+ V FDDS++
Sbjct: 17 WSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSISYNPATAKEIVNVGHSFHVIFDDSSN 76
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GGPL + YRL QFHFHWG ++ GSEHTV+ Y ELHLVHWN+ KY + EA
Sbjct: 77 QSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELHLVHWNSAKYSSASEAI 136
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
+ GLA++GV +K+G + +LQ++L+ L +K K
Sbjct: 137 SKADGLAILGVLMKVGPANPSLQKVLDALNSVKTK 171
>ref|NP_033929.2| carbonic anhydrase 1 [Mus musculus].
Length = 261
Score = 144 bits (364), Expect = 8e-35
Identities = 68/155 (43%), Positives = 99/155 (63%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W G SPI+I+ ++ +D L+PLS+SY+ A+ + N G+ V FDDS++
Sbjct: 17 WSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSISYNPATAKEIVNVGHSFHVIFDDSSN 76
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GGPL + YRL QFHFHWG ++ GSEHTV+ Y ELHLVHWN+ KY + EA
Sbjct: 77 QSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELHLVHWNSAKYSSASEAI 136
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
+ GLA++GV +K+G + +LQ++L+ L +K K
Sbjct: 137 SKADGLAILGVLMKVGPANPSLQKVLDALNSVKTK 171
>ref|NP_031618.2| carbonic anhydrase-related protein [Mus musculus].
Length = 291
Score = 108 bits (271), Expect = 5e-24
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASC--LHVWNTGYLLQVEFDDSTDWSGISGG 508
G SPIN+ R++ YDP L + +S + C V N G+ +QV S +SGG
Sbjct: 47 GEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKSK---SVLSGG 103
Query: 509 PLEN--PYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHG 682
PL + L + FHWG ++ GSEHTV A+P ELHL+HWN+ + + EA HG
Sbjct: 104 PLPQGQEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGKPHG 163
Query: 683 LAVIGVFLKLGARHEALQELLEVLPDIKHK 772
+A+I +F+++G H L+ + E+L DI++K
Sbjct: 164 IAIIALFVQIGKEHVGLKAVTEILQDIQYK 193
>ref|NP_082572.1| carbonic anhydrase-related protein 10 [Mus musculus].
Length = 328
Score = 85.1 bits (209), Expect = 7e-17
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLH-VWNTGYLLQVEFDDSTDWSGISGGP 511
G R SP+NI ++DP L PL ++ ++NTG + + D ISGGP
Sbjct: 63 GKRQSPVNIETSHMIFDPFLTPLRINTGGRKVSGTMYNTGRHVSLRLDKE-HLVNISGGP 121
Query: 512 LENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAV 691
+ +RL++ H+G+ D GSEH + A+ E+ L+H+N Y N EAA +GL V
Sbjct: 122 MTYSHRLEEIRLHFGSEDSQGSEHLLNGQAFSGEVQLIHYNHELYTNVTEAAKSPNGLVV 181
Query: 692 IGVFLKL 712
+ +F+K+
Sbjct: 182 VSIFIKV 188
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,360,030
Number of extensions: 1055946
Number of successful extensions: 6066
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 5968
Number of HSP's successfully gapped: 19
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013889
(953 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001730.1| carbonic anhydrase 5A, mitochondrial precursor ... 311 6e-85
Alignment gi|NP_009151.1| carbonic anhydrase 5B, mitochondrial precursor ... 256 2e-68
Alignment gi|NP_005173.1| carbonic anhydrase 7 isoform 1 [Homo sapiens]. 167 2e-41
Alignment gi|NP_000058.1| carbonic anhydrase 2 [Homo sapiens]. 159 5e-39
Alignment gi|NP_940986.1| carbonic anhydrase 13 [Homo sapiens]. 152 6e-37
Alignment gi|NP_005172.1| carbonic anhydrase 3 [Homo sapiens]. 149 5e-36
Alignment gi|NP_001158302.1| carbonic anhydrase 1 [Homo sapiens]. 144 2e-34
Alignment gi|NP_001122303.1| carbonic anhydrase 1 [Homo sapiens]. 144 2e-34
Alignment gi|NP_001122302.1| carbonic anhydrase 1 [Homo sapiens]. 144 2e-34
Alignment gi|NP_001122301.1| carbonic anhydrase 1 [Homo sapiens]. 144 2e-34
>ref|NP_001730.1| carbonic anhydrase 5A, mitochondrial precursor [Homo sapiens].
Length = 305
Score = 311 bits (797), Expect = 6e-85
Identities = 142/198 (71%), Positives = 164/198 (82%)
Frame = +2
Query: 179 SSAFSGLVRQRWGTLPGHWLRPERWCVQAPCGPRRRNNAVHPLWKDPASSPGGTRPSPIN 358
+SAFS LV Q W L +RP RWC Q C + NN +HPLW P S PGGTR SPIN
Sbjct: 9 TSAFSFLVEQMWAPLWSRSMRPGRWCSQRSCAWQTSNNTLHPLWTVPVSVPGGTRQSPIN 68
Query: 359 IRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPLENPYRLKQ 538
I+WRDSVYDP+L+PL VSY+AASCL++WNTGYL QVEFDD+T+ SGISGGPLEN YRLKQ
Sbjct: 69 IQWRDSVYDPQLKPLRVSYEAASCLYIWNTGYLFQVEFDDATEASGISGGPLENHYRLKQ 128
Query: 539 FHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVIGVFLKLGA 718
FHFHWGAV+E GSEHTV+ HAYPAELHLVHWN+VKYQNY+EA GE+GLAVIGVFLKLGA
Sbjct: 129 FHFHWGAVNEGGSEHTVDGHAYPAELHLVHWNSVKYQNYKEAVVGENGLAVIGVFLKLGA 188
Query: 719 RHEALQELLEVLPDIKHK 772
H+ LQ L+++LP+IKHK
Sbjct: 189 HHQTLQRLVDILPEIKHK 206
>ref|NP_009151.1| carbonic anhydrase 5B, mitochondrial precursor [Homo sapiens].
Length = 317
Score = 256 bits (654), Expect = 2e-68
Identities = 116/177 (65%), Positives = 138/177 (77%)
Frame = +2
Query: 242 PERWCVQAPCGPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDA 421
P R C C + RN A+HPLW+ PGG R SPINIRWRDSVYDP L+PL++SYD
Sbjct: 30 PARPCSLYTCTYKTRNRALHPLWESVDLVPGGDRQSPINIRWRDSVYDPGLKPLTISYDP 89
Query: 422 ASCLHVWNTGYLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHA 601
A+CLHVWN GY VEF+DSTD S I GGPLE+ YRLKQFHFHWGA+D WGSEHTV+
Sbjct: 90 ATCLHVWNNGYSFLVEFEDSTDKSVIKGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKC 149
Query: 602 YPAELHLVHWNAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
+PAELHLVHWNAV+++N+ +AA E+GLAVIGVFLKLG H+ LQ+L++ LP IKHK
Sbjct: 150 FPAELHLVHWNAVRFENFEDAALEENGLAVIGVFLKLGKHHKELQKLVDTLPSIKHK 206
>ref|NP_005173.1| carbonic anhydrase 7 isoform 1 [Homo sapiens].
Length = 264
Score = 167 bits (422), Expect = 2e-41
Identities = 78/149 (52%), Positives = 103/149 (69%)
Frame = +2
Query: 335 GTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTDWSGISGGPL 514
G R SPINI +VY P LQPL +SY+A L + N G+ +QV+F+DS D + ++GGPL
Sbjct: 27 GDRQSPINIISSQAVYSPSLQPLELSYEACMSLSITNNGHSVQVDFNDSDDRTVVTGGPL 86
Query: 515 ENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAATGEHGLAVI 694
E PYRLKQFHFHWG + GSEHTV+ ++P+ELHLVHWNA KY + EAA+ GLAV+
Sbjct: 87 EGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVV 146
Query: 695 GVFLKLGARHEALQELLEVLPDIKHKAGK 781
GVFL+ G H ++ L + L ++ K K
Sbjct: 147 GVFLETGDEHPSMNRLTDALYMVRFKGTK 175
>ref|NP_000058.1| carbonic anhydrase 2 [Homo sapiens].
Length = 260
Score = 159 bits (401), Expect = 5e-39
Identities = 81/167 (48%), Positives = 106/167 (63%)
Frame = +2
Query: 272 GPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTG 451
G + N H W G R SP++I + YDP L+PLSVSYD A+ L + N G
Sbjct: 6 GYGKHNGPEH--WHKDFPIAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQATSLRILNNG 63
Query: 452 YLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHW 631
+ VEFDDS D + + GGPL+ YRL QFHFHWG++D GSEHTV+ Y AELHLVHW
Sbjct: 64 HAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHW 123
Query: 632 NAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
N KY ++ +A GLAV+G+FLK+G+ LQ++++VL IK K
Sbjct: 124 N-TKYGDFGKAVQQPDGLAVLGIFLKVGSAKPGLQKVVDVLDSIKTK 169
>ref|NP_940986.1| carbonic anhydrase 13 [Homo sapiens].
Length = 262
Score = 152 bits (383), Expect = 6e-37
Identities = 74/167 (44%), Positives = 106/167 (63%)
Frame = +2
Query: 272 GPRRRNNAVHPLWKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTG 451
G R N +H WK+ G + SPI I+ ++ YD L+PLS+ YD +S + N+G
Sbjct: 7 GYREHNGPIH--WKEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSG 64
Query: 452 YLLQVEFDDSTDWSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHW 631
+ V+FDD+ + S + GGPL YRL+Q H HWG+ D+ GSEH V+ +Y AELH+VHW
Sbjct: 65 HSFNVDFDDTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHW 124
Query: 632 NAVKYQNYREAATGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
N+ KY ++ EAA GLAV+GVFL++G + LQ++ + L IK K
Sbjct: 125 NSDKYPSFVEAAHEPDGLAVLGVFLQIGEPNSQLQKITDTLDSIKEK 171
>ref|NP_005172.1| carbonic anhydrase 3 [Homo sapiens].
Length = 260
Score = 149 bits (375), Expect = 5e-36
Identities = 74/155 (47%), Positives = 95/155 (61%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W + + G SP+ + +D +DP LQP SVSYD S + N G +V FDD+ D
Sbjct: 16 WHELFPNAKGENQSPVELHTKDIRHDPSLQPWSVSYDGGSAKTILNNGKTCRVVFDDTYD 75
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GGPL PYRL+QFH HWG+ D+ GSEHTV+ Y AELHLVHWN KY ++EA
Sbjct: 76 RSMLRGGPLPGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNP-KYNTFKEAL 134
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
G+AVIG+FLK+G + Q L+ L IK K
Sbjct: 135 KQRDGIAVIGIFLKIGHENGEFQIFLDALDKIKTK 169
>ref|NP_001158302.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 144 bits (362), Expect = 2e-34
Identities = 68/155 (43%), Positives = 98/155 (63%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W G SP++I+ ++ +D L+P+SVSY+ A+ + N G+ V F+D+ +
Sbjct: 17 WSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHVNFEDNDN 76
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GGP + YRL QFHFHWG+ +E GSEHTV+ Y AELH+ HWN+ KY + EAA
Sbjct: 77 RSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAA 136
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
+ GLAVIGV +K+G + LQ++L+ L IK K
Sbjct: 137 SKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTK 171
>ref|NP_001122303.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 144 bits (362), Expect = 2e-34
Identities = 68/155 (43%), Positives = 98/155 (63%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W G SP++I+ ++ +D L+P+SVSY+ A+ + N G+ V F+D+ +
Sbjct: 17 WSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHVNFEDNDN 76
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GGP + YRL QFHFHWG+ +E GSEHTV+ Y AELH+ HWN+ KY + EAA
Sbjct: 77 RSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAA 136
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
+ GLAVIGV +K+G + LQ++L+ L IK K
Sbjct: 137 SKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTK 171
>ref|NP_001122302.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 144 bits (362), Expect = 2e-34
Identities = 68/155 (43%), Positives = 98/155 (63%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W G SP++I+ ++ +D L+P+SVSY+ A+ + N G+ V F+D+ +
Sbjct: 17 WSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHVNFEDNDN 76
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GGP + YRL QFHFHWG+ +E GSEHTV+ Y AELH+ HWN+ KY + EAA
Sbjct: 77 RSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAA 136
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
+ GLAVIGV +K+G + LQ++L+ L IK K
Sbjct: 137 SKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTK 171
>ref|NP_001122301.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 144 bits (362), Expect = 2e-34
Identities = 68/155 (43%), Positives = 98/155 (63%)
Frame = +2
Query: 308 WKDPASSPGGTRPSPINIRWRDSVYDPRLQPLSVSYDAASCLHVWNTGYLLQVEFDDSTD 487
W G SP++I+ ++ +D L+P+SVSY+ A+ + N G+ V F+D+ +
Sbjct: 17 WSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHVNFEDNDN 76
Query: 488 WSGISGGPLENPYRLKQFHFHWGAVDEWGSEHTVEDHAYPAELHLVHWNAVKYQNYREAA 667
S + GGP + YRL QFHFHWG+ +E GSEHTV+ Y AELH+ HWN+ KY + EAA
Sbjct: 77 RSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAA 136
Query: 668 TGEHGLAVIGVFLKLGARHEALQELLEVLPDIKHK 772
+ GLAVIGV +K+G + LQ++L+ L IK K
Sbjct: 137 SKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTK 171
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,174,213
Number of extensions: 1298874
Number of successful extensions: 7955
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 7803
Number of HSP's successfully gapped: 27
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013889
(953 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,180,090
Number of extensions: 129
Number of successful extensions: 129
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 0
Length of query: 953
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 932
Effective length of database: 2,808,413,156
Effective search space: 2617441061392
Effective search space used: 2617441061392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)