Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013890
(1010 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030198.1| BSD domain-containing protein 1 [Bos taurus]. 511 e-145
>ref|NP_001030198.1| BSD domain-containing protein 1 [Bos taurus].
Length = 461
Score = 511 bits (1317), Expect = e-145
Identities = 261/312 (83%), Positives = 267/312 (85%)
Frame = +1
Query: 10 CHAGKMAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATA 189
C G ++ EDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQ DTACTIAATA
Sbjct: 29 CRVG--SQREDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQRDTACTIAATA 86
Query: 190 SVVKEKLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPY 369
SVVKEKL TEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPY
Sbjct: 87 SVVKEKLTTEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPY 146
Query: 370 DGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTK 549
DGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTK
Sbjct: 147 DGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTK 206
Query: 550 MVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXXXXXLVGSSPTS 729
MVPAAVSHSEFWHRYFYKV+QLEQEQARRDALKQRAEQ+IS L G SPTS
Sbjct: 207 MVPAAVSHSEFWHRYFYKVHQLEQEQARRDALKQRAEQSISEEPGWEEEEEELAGVSPTS 266
Query: 730 PKEVKVPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXISLVTQIAKPAPA 909
KE KVPVAR STS EGGPGPQSPCEENL +SLVTQIAKP PA
Sbjct: 267 LKEAKVPVARPSTSPEGGPGPQSPCEENLVTPVEPPTEVTPSESSESVSLVTQIAKPPPA 326
Query: 910 SEAAVMPKDLSQ 945
SEA +PKDLSQ
Sbjct: 327 SEAPALPKDLSQ 338
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,197,093
Number of extensions: 1182630
Number of successful extensions: 4191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4183
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013890
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013890
(1010 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851877.1| PREDICTED: similar to BSD domain containing 1 i... 511 e-145
Alignment gi|XP_864597.1| PREDICTED: similar to BSD domain containing 1 i... 387 e-110
Alignment gi|XP_544433.2| PREDICTED: similar to BSD domain containing 1 i... 305 4e-83
Alignment gi|XP_864547.1| PREDICTED: similar to BSD domain containing 1 i... 132 7e-31
>ref|XP_851877.1| PREDICTED: similar to BSD domain containing 1 isoform 2 [Canis
familiaris].
Length = 430
Score = 511 bits (1315), Expect = e-145
Identities = 260/307 (84%), Positives = 267/307 (86%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 204
MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 60
Query: 205 KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA 384
KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDG KA
Sbjct: 61 KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGNKA 120
Query: 385 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 564
RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA
Sbjct: 121 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 180
Query: 565 VSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXXXXXLVGSSPTSPKEVK 744
VSH+EFWHRYFYKV+QLEQEQARRDALKQRAEQ+IS LV SPTSPKE K
Sbjct: 181 VSHAEFWHRYFYKVHQLEQEQARRDALKQRAEQSISEEPGWEEEEEELVSISPTSPKEAK 240
Query: 745 VPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXISLVTQIAKPAPASEAAV 924
V VA+TSTS EGGPG SPCEEN ISLVTQ+AKPA A+EA V
Sbjct: 241 VSVAKTSTSPEGGPGLLSPCEENPVTPAEPPREVTPSESSESISLVTQVAKPATAAEAPV 300
Query: 925 MPKDLSQ 945
+PKDLSQ
Sbjct: 301 LPKDLSQ 307
>ref|XP_864597.1| PREDICTED: similar to BSD domain containing 1 isoform 4 [Canis
familiaris].
Length = 403
Score = 387 bits (993), Expect(2) = e-110
Identities = 198/246 (80%), Positives = 205/246 (83%)
Frame = +1
Query: 208 LATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKAR 387
L TEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDG KAR
Sbjct: 35 LQTEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGNKAR 94
Query: 388 LYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAV 567
LYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAV
Sbjct: 95 LYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAV 154
Query: 568 SHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXXXXXLVGSSPTSPKEVKV 747
SH+EFWHRYFYKV+QLEQEQARRDALKQRAEQ+IS LV SPTSPKE KV
Sbjct: 155 SHAEFWHRYFYKVHQLEQEQARRDALKQRAEQSISEEPGWEEEEEELVSISPTSPKEAKV 214
Query: 748 PVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXISLVTQIAKPAPASEAAVM 927
VA+TSTS EGGPG SPCEEN ISLVTQ+AKPA A+EA V+
Sbjct: 215 SVAKTSTSPEGGPGLLSPCEENPVTPAEPPREVTPSESSESISLVTQVAKPATAAEAPVL 274
Query: 928 PKDLSQ 945
PKDLSQ
Sbjct: 275 PKDLSQ 280
Score = 32.7 bits (73), Expect(2) = e-110
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 158 MTRPAPLQPLPAWSRRS 208
MTR PLQP PAWSRRS
Sbjct: 1 MTRLVPLQPQPAWSRRS 17
>ref|XP_544433.2| PREDICTED: similar to BSD domain containing 1 isoform 1 [Canis
familiaris].
Length = 326
Score = 305 bits (781), Expect = 4e-83
Identities = 156/203 (76%), Positives = 163/203 (80%)
Frame = +1
Query: 337 MGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLV 516
MGTPSGTAEPYDG KARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLV
Sbjct: 1 MGTPSGTAEPYDGNKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLV 60
Query: 517 GSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXX 696
GSPSIRALYTKMVPAAVSH+EFWHRYFYKV+QLEQEQARRDALKQRAEQ+IS
Sbjct: 61 GSPSIRALYTKMVPAAVSHAEFWHRYFYKVHQLEQEQARRDALKQRAEQSISEEPGWEEE 120
Query: 697 XXXLVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXIS 876
LV SPTSPKE KV VA+TSTS EGGPG SPCEEN IS
Sbjct: 121 EEELVSISPTSPKEAKVSVAKTSTSPEGGPGLLSPCEENPVTPAEPPREVTPSESSESIS 180
Query: 877 LVTQIAKPAPASEAAVMPKDLSQ 945
LVTQ+AKPA A+EA V+PKDLSQ
Sbjct: 181 LVTQVAKPATAAEAPVLPKDLSQ 203
>ref|XP_864547.1| PREDICTED: similar to BSD domain containing 1 isoform 3 [Canis
familiaris].
Length = 66
Score = 132 bits (331), Expect = 7e-31
Identities = 64/65 (98%), Positives = 65/65 (100%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 204
MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 60
Query: 205 KLATE 219
KLAT+
Sbjct: 61 KLATK 65
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,930,296
Number of extensions: 1215372
Number of successful extensions: 4252
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4246
Number of HSP's successfully gapped: 5
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013890
(1010 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356332.1| PREDICTED: BSD domain-containing protein 1 i... 548 e-156
Alignment gi|XP_003356333.1| PREDICTED: BSD domain-containing protein 1 i... 534 e-152
Alignment gi|XP_003356334.1| PREDICTED: BSD domain-containing protein 1 i... 350 7e-97
Alignment gi|XP_003356335.1| PREDICTED: BSD domain-containing protein 1 i... 312 2e-85
>ref|XP_003356332.1| PREDICTED: BSD domain-containing protein 1 isoform 1 [Sus scrofa].
Length = 430
Score = 548 bits (1411), Expect = e-156
Identities = 278/307 (90%), Positives = 278/307 (90%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 204
MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 60
Query: 205 KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA 384
KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA
Sbjct: 61 KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA 120
Query: 385 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 564
RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA
Sbjct: 121 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 180
Query: 565 VSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXXXXXLVGSSPTSPKEVK 744
VSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNIS LVGSSPTSPKEVK
Sbjct: 181 VSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKEVK 240
Query: 745 VPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXISLVTQIAKPAPASEAAV 924
VPVARTSTSLEGGPGPQSPCEENL ISLVTQIAKPAPASEAAV
Sbjct: 241 VPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEAAV 300
Query: 925 MPKDLSQ 945
MPKDLSQ
Sbjct: 301 MPKDLSQ 307
>ref|XP_003356333.1| PREDICTED: BSD domain-containing protein 1 isoform 2 [Sus scrofa].
Length = 454
Score = 534 bits (1376), Expect = e-152
Identities = 278/331 (83%), Positives = 278/331 (83%), Gaps = 24/331 (7%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 204
MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 60
Query: 205 KLA------------------------TEGSSGATEKMKKGLSDFLGVISDTFAPSPDKT 312
KLA TEGSSGATEKMKKGLSDFLGVISDTFAPSPDKT
Sbjct: 61 KLAVSTPCTFQAAIPRSLTYMGPFSLQTEGSSGATEKMKKGLSDFLGVISDTFAPSPDKT 120
Query: 313 IDCDVITLMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKK 492
IDCDVITLMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKK
Sbjct: 121 IDCDVITLMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKK 180
Query: 493 GEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNIS 672
GEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNIS
Sbjct: 181 GEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNIS 240
Query: 673 XXXXXXXXXXXLVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXX 852
LVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENL
Sbjct: 241 EEPDWEEEEEELVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTP 300
Query: 853 XXXXXXISLVTQIAKPAPASEAAVMPKDLSQ 945
ISLVTQIAKPAPASEAAVMPKDLSQ
Sbjct: 301 SESSESISLVTQIAKPAPASEAAVMPKDLSQ 331
>ref|XP_003356334.1| PREDICTED: BSD domain-containing protein 1 isoform 3 [Sus scrofa].
Length = 374
Score = 350 bits (898), Expect = 7e-97
Identities = 198/307 (64%), Positives = 203/307 (66%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 204
MAEGEDVGWWRSWLQQSYQAVKEKSSE
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKSSE--------------------------------- 27
Query: 205 KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA 384
A E MK+ L++F V+ A T+ T S E A
Sbjct: 28 ---------ALEFMKRDLTEFTQVVQHDTA-----------CTIAATASVVKEKL---AA 64
Query: 385 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 564
RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA
Sbjct: 65 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 124
Query: 565 VSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXXXXXLVGSSPTSPKEVK 744
VSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNIS LVGSSPTSPKEVK
Sbjct: 125 VSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKEVK 184
Query: 745 VPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXISLVTQIAKPAPASEAAV 924
VPVARTSTSLEGGPGPQSPCEENL ISLVTQIAKPAPASEAAV
Sbjct: 185 VPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEAAV 244
Query: 925 MPKDLSQ 945
MPKDLSQ
Sbjct: 245 MPKDLSQ 251
>ref|XP_003356335.1| PREDICTED: BSD domain-containing protein 1 isoform 4 [Sus scrofa].
Length = 335
Score = 312 bits (799), Expect = 2e-85
Identities = 160/189 (84%), Positives = 160/189 (84%)
Frame = +1
Query: 379 KARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVP 558
KARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVP
Sbjct: 24 KARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVP 83
Query: 559 AAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXXXXXLVGSSPTSPKE 738
AAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNIS LVGSSPTSPKE
Sbjct: 84 AAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISEEPDWEEEEEELVGSSPTSPKE 143
Query: 739 VKVPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXISLVTQIAKPAPASEA 918
VKVPVARTSTSLEGGPGPQSPCEENL ISLVTQIAKPAPASEA
Sbjct: 144 VKVPVARTSTSLEGGPGPQSPCEENLVTPTEPPTEVTPSESSESISLVTQIAKPAPASEA 203
Query: 919 AVMPKDLSQ 945
AVMPKDLSQ
Sbjct: 204 AVMPKDLSQ 212
Score = 57.4 bits (137), Expect = 1e-08
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKS 99
MAEGEDVGWWRSWLQQSYQAVKEK+
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKA 25
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,940,661
Number of extensions: 763301
Number of successful extensions: 2774
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2766
Number of HSP's successfully gapped: 6
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013890
(1010 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598650.2| BSD domain-containing protein 1 [Mus musculus]. 481 e-136
>ref|NP_598650.2| BSD domain-containing protein 1 [Mus musculus].
Length = 427
Score = 481 bits (1237), Expect = e-136
Identities = 249/308 (80%), Positives = 260/308 (84%), Gaps = 1/308 (0%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 204
MAEGEDVGWWRSWLQQSYQAVKEKS+EALEFMKRDLTEFTQVVQHDTACTIAATASVVKE
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKSTEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 60
Query: 205 KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA 384
KLATEGSSGATEK+KKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA
Sbjct: 61 KLATEGSSGATEKVKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA 120
Query: 385 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 564
RLYSLQSDPATYCNEPDGPPELFDAWLS+FCLEEKKGEISELLVGSPSIRALYTKMVPAA
Sbjct: 121 RLYSLQSDPATYCNEPDGPPELFDAWLSEFCLEEKKGEISELLVGSPSIRALYTKMVPAA 180
Query: 565 VSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXXXXXLVGSSPTSPKEVK 744
VSHSEFWHRYFYKV+QLEQEQARRDALKQRA+Q+IS L G P SPKE K
Sbjct: 181 VSHSEFWHRYFYKVHQLEQEQARRDALKQRADQSISEEPGWEEEEEELEGIVP-SPKEAK 239
Query: 745 VP-VARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXISLVTQIAKPAPASEAA 921
+P +T+TS E P PQSPCEE ISLVTQ+A PA A EA
Sbjct: 240 IPKETKTTTSPEDEPAPQSPCEET---PVEPPAEATPSESSESISLVTQVANPAAAPEAP 296
Query: 922 VMPKDLSQ 945
+PKDLSQ
Sbjct: 297 ELPKDLSQ 304
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,603,150
Number of extensions: 982111
Number of successful extensions: 3360
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3353
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013890
(1010 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060515.3| BSD domain-containing protein 1 isoform b [Homo... 515 e-146
Alignment gi|NP_001137360.1| BSD domain-containing protein 1 isoform a [H... 504 e-143
Alignment gi|NP_001137361.1| BSD domain-containing protein 1 isoform c [H... 317 8e-87
Alignment gi|NP_001137362.1| BSD domain-containing protein 1 isoform d [H... 279 3e-75
>ref|NP_060515.3| BSD domain-containing protein 1 isoform b [Homo sapiens].
Length = 430
Score = 515 bits (1326), Expect = e-146
Identities = 262/307 (85%), Positives = 267/307 (86%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 204
MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 60
Query: 205 KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA 384
KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA
Sbjct: 61 KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA 120
Query: 385 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 564
RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA
Sbjct: 121 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 180
Query: 565 VSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXXXXXLVGSSPTSPKEVK 744
VSHSEFWHRYFYKV+QLEQEQARRDALKQRAEQ+IS L+G SP SPKE K
Sbjct: 181 VSHSEFWHRYFYKVHQLEQEQARRDALKQRAEQSISEEPGWEEEEEELMGISPISPKEAK 240
Query: 745 VPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXISLVTQIAKPAPASEAAV 924
VPVA+ ST EG PGPQSPCEENL ISLVTQIA PA A EA V
Sbjct: 241 VPVAKISTFPEGEPGPQSPCEENLVTSVEPPAEVTPSESSESISLVTQIANPATAPEARV 300
Query: 925 MPKDLSQ 945
+PKDLSQ
Sbjct: 301 LPKDLSQ 307
>ref|NP_001137360.1| BSD domain-containing protein 1 isoform a [Homo sapiens].
Length = 447
Score = 504 bits (1298), Expect = e-143
Identities = 262/324 (80%), Positives = 267/324 (82%), Gaps = 17/324 (5%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 204
MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 60
Query: 205 KLA-----------------TEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVIT 333
KLA TEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVIT
Sbjct: 61 KLAIAACSRGACFLCPFSIQTEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVIT 120
Query: 334 LMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELL 513
LMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELL
Sbjct: 121 LMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELL 180
Query: 514 VGSPSIRALYTKMVPAAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXX 693
VGSPSIRALYTKMVPAAVSHSEFWHRYFYKV+QLEQEQARRDALKQRAEQ+IS
Sbjct: 181 VGSPSIRALYTKMVPAAVSHSEFWHRYFYKVHQLEQEQARRDALKQRAEQSISEEPGWEE 240
Query: 694 XXXXLVGSSPTSPKEVKVPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXI 873
L+G SP SPKE KVPVA+ ST EG PGPQSPCEENL I
Sbjct: 241 EEEELMGISPISPKEAKVPVAKISTFPEGEPGPQSPCEENLVTSVEPPAEVTPSESSESI 300
Query: 874 SLVTQIAKPAPASEAAVMPKDLSQ 945
SLVTQIA PA A EA V+PKDLSQ
Sbjct: 301 SLVTQIANPATAPEARVLPKDLSQ 324
>ref|NP_001137361.1| BSD domain-containing protein 1 isoform c [Homo sapiens].
Length = 374
Score = 317 bits (813), Expect = 8e-87
Identities = 182/307 (59%), Positives = 192/307 (62%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKE 204
MAEGEDVGWWRSWLQQSYQAVKEKSSE
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKSSE--------------------------------- 27
Query: 205 KLATEGSSGATEKMKKGLSDFLGVISDTFAPSPDKTIDCDVITLMGTPSGTAEPYDGTKA 384
A E MK+ L++F V+ A T+ T S E A
Sbjct: 28 ---------ALEFMKRDLTEFTQVVQHDTA-----------CTIAATASVVKEKL---AA 64
Query: 385 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 564
RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA
Sbjct: 65 RLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAA 124
Query: 565 VSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXXXXXLVGSSPTSPKEVK 744
VSHSEFWHRYFYKV+QLEQEQARRDALKQRAEQ+IS L+G SP SPKE K
Sbjct: 125 VSHSEFWHRYFYKVHQLEQEQARRDALKQRAEQSISEEPGWEEEEEELMGISPISPKEAK 184
Query: 745 VPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXISLVTQIAKPAPASEAAV 924
VPVA+ ST EG PGPQSPCEENL ISLVTQIA PA A EA V
Sbjct: 185 VPVAKISTFPEGEPGPQSPCEENLVTSVEPPAEVTPSESSESISLVTQIANPATAPEARV 244
Query: 925 MPKDLSQ 945
+PKDLSQ
Sbjct: 245 LPKDLSQ 251
>ref|NP_001137362.1| BSD domain-containing protein 1 isoform d [Homo sapiens].
Length = 335
Score = 279 bits (714), Expect = 3e-75
Identities = 144/189 (76%), Positives = 149/189 (78%)
Frame = +1
Query: 379 KARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVP 558
KARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVP
Sbjct: 24 KARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVP 83
Query: 559 AAVSHSEFWHRYFYKVYQLEQEQARRDALKQRAEQNISXXXXXXXXXXXLVGSSPTSPKE 738
AAVSHSEFWHRYFYKV+QLEQEQARRDALKQRAEQ+IS L+G SP SPKE
Sbjct: 84 AAVSHSEFWHRYFYKVHQLEQEQARRDALKQRAEQSISEEPGWEEEEEELMGISPISPKE 143
Query: 739 VKVPVARTSTSLEGGPGPQSPCEENLXXXXXXXXXXXXXXXXXXISLVTQIAKPAPASEA 918
KVPVA+ ST EG PGPQSPCEENL ISLVTQIA PA A EA
Sbjct: 144 AKVPVAKISTFPEGEPGPQSPCEENLVTSVEPPAEVTPSESSESISLVTQIANPATAPEA 203
Query: 919 AVMPKDLSQ 945
V+PKDLSQ
Sbjct: 204 RVLPKDLSQ 212
Score = 57.4 bits (137), Expect = 2e-08
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +1
Query: 25 MAEGEDVGWWRSWLQQSYQAVKEKS 99
MAEGEDVGWWRSWLQQSYQAVKEK+
Sbjct: 1 MAEGEDVGWWRSWLQQSYQAVKEKA 25
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,113,670
Number of extensions: 1187920
Number of successful extensions: 4374
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4363
Number of HSP's successfully gapped: 6
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013890
(1010 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 547 e-153
>Sscrofa_Chr06
|| Length = 157765593
Score = 547 bits (276), Expect = e-153
Identities = 310/316 (98%), Gaps = 4/316 (1%)
Strand = Plus / Minus
Query: 699 agaggagcttgtgggaagttcgcccacatctccaaaagaggtaaaggttcctgtggccag 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82792713 agaggagcttgtgggaagttcgcccacatctccaaaagaggtaaaggttcctgtggccag 82792654
Query: 759 aacttccacatcccttgaaggaggacctggccctcagagcccctgtgaagagaatctggt 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82792653 aacttccacatcccttgaaggaggacctggccctcagagcccctgtgaagagaatctggt 82792594
Query: 819 gacccccactgagcctccaacagaggtgactccatcggagagcagtgagagcatctccct 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82792593 gacccccactgagcctccaacagaggtgactccatcggagagcagtgagagcatctccct 82792534
Query: 879 cgtgacacagattgccaaacctgcccctgcatctgaggcagccgtgatgcccaaggacct 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82792533 cgtgacacagattgccaaacctgcccctgcatctgaggcagccgtgatgcccaaggacct 82792474
Query: 939 gtccc-aaagcttctaga-gcatctttggaagaaca-ggcctggctgtgaatg-gggtga 994
||||| |||||||||||| ||||||||||| ||||| |||||||||||| ||| ||||||
Sbjct: 82792473 gtcccaaaagcttctagaggcatctttggaggaacagggcctggctgtggatgtgggtga 82792414
Query: 995 gactggacccccgccc 1010
||||||||||||||||
Sbjct: 82792413 gactggacccccgccc 82792398
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 214 accgaaggctcctcgggagcaacagagaaaatgaagaaagggctgtctgacttcctagga 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82799705 accgaaggctcctcgggagcaacagagaaaatgaagaaagggctgtctgacttcctagga 82799646
Query: 274 gtgatctccgacacttttgctccctcaccagacaaaaccattgactgcgatgtcatcacc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82799645 gtgatctccgacacttttgctccctcaccagacaaaaccattgactgcgatgtcatcacc 82799586
Query: 334 ctgatgggcacaccatctggcacagctgagccctatgatggcaccaagg 382
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82799585 ctgatgggcacaccatctggcacagctgagccctatgatggcaccaagg 82799537
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 436 gggcccccggaattgtttgacgcctggctttcccagttctgcttggaggagaagaagggg 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82794862 gggcccccggaattgtttgacgcctggctttcccagttctgcttggaggagaagaagggg 82794803
Query: 496 gagatctcagagctccttgtgggcagcccttccatcagggccctctacaccaagatggtg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82794802 gagatctcagagctccttgtgggcagcccttccatcagggccctctacaccaagatggtg 82794743
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 95 agtcctctgaagccttggagttcatgaagcgggacctgaccgagttcacccaggtggtgc 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82802999 agtcctctgaagccttggagttcatgaagcgggacctgaccgagttcacccaggtggtgc 82802940
Query: 155 agcatgacacggcctgcaccattgcagccactgccagcgtggtcaaggagaagctggcc 213
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82802939 agcatgacacggcctgcaccattgcagccactgccagcgtggtcaaggagaagctggcc 82802881
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 619 caggagcaggcccggagggatgccctgaagcagcgggcagaacagaacatctctgaagag 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82794102 caggagcaggcccggagggatgccctgaagcagcgggcagaacagaacatctctgaagag 82794043
Query: 679 cctgactgggaagaggaagaag 700
||||||||||||||||||||||
Sbjct: 82794042 cctgactgggaagaggaagaag 82794021
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 552 ggtgcccgcggctgtttcccactcagaattctggcatcggtatttctataaagtctatca 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82794337 ggtgcccgcggctgtttcccactcagaattctggcatcggtatttctataaagtctatca 82794278
Query: 612 actggaacagg 622
|||||||||||
Sbjct: 82794277 actggaacagg 82794267
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 35 gggaggacgtgggatggtggcggagctggctgcagcagagctaccaggcagtcaaggaga 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82807844 gggaggacgtgggatggtggcggagctggctgcagcagagctaccaggcagtcaaggaga 82807785
Query: 95 ag 96
||
Sbjct: 82807784 ag 82807783
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 380 aggctcgtctatatagtctgcagtcagacccagcaacctactgcaatgaaccagatgg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82796818 aggctcgtctatatagtctgcagtcagacccagcaacctactgcaatgaaccagatgg 82796761
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 2 agtgatgatgtcatgcgggcaagatggcggaaggg 36
|||||||||||||||||||||||||||||||||||
Sbjct: 82808139 agtgatgatgtcatgcgggcaagatggcggaaggg 82808105
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,094,924
Number of extensions: 364
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 9
Length of query: 1010
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 989
Effective length of database: 2,808,413,156
Effective search space: 2777520611284
Effective search space used: 2777520611284
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)