Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013902
(1400 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850586.1| PREDICTED: similar to transcription termination... 203 4e-52
>ref|XP_850586.1| PREDICTED: similar to transcription termination factor, RNA
polymerase I [Canis familiaris].
Length = 976
Score = 203 bits (516), Expect = 4e-52
Identities = 136/351 (38%), Positives = 178/351 (50%), Gaps = 16/351 (4%)
Frame = +3
Query: 255 RNKMEGESSRPETHPPVFRKKKTKR--SVHKDRHRRHGREPLPDAPLAGEPPPVTKSEEE 428
RN+MEGESSR E H PVF KKK K+ SV+K+ H RH E + D+PLA E VTK++++
Sbjct: 194 RNRMEGESSRLEIHTPVFDKKKKKKKYSVYKEGHLRHPHESVRDSPLASEQSRVTKNKKK 253
Query: 429 KEHRQRLVSSPPRKSEVCDETEXXXXXXXXXXXXXXXXXGVAREPGVVYVLADEETVEDT 608
++ Q L+SSP +KSE+CDETE GV E GVVYVL D+E +E+T
Sbjct: 254 RKDFQHLLSSPLKKSEICDETETATSVPKKKRKKKHRDSGVDEETGVVYVLVDKENIENT 313
Query: 609 SADLGKEFDVVYLDPSKERKAQREPEAEGPPAATKWRARESEE-XXXXXXXXXXXXXXXX 785
+ ++ DVVY+D S+E+K ++PEA + K E EE
Sbjct: 314 PKNFRRDVDVVYVDVSQEQKPAKDPEAGELHSVPKSHKNELEELNCRVKETKRKKKHRRK 373
Query: 786 XXXCDAGRATPEADLAPPASESHEEQ-----DAQPE--MAQLPGSEGQSXXXXXXXXXST 944
CDA + +P A LA P S ++ PE + QLP + + S
Sbjct: 374 EASCDAEQESPPARLALPKSGPDPQELEGLLSVGPEGGIPQLPVAADKKKHKKKKRKISH 433
Query: 945 NPEFEARPVPEPEGAGAAYSEGW------XXXXXXXXXXXXXXXXXXXXXXXERKHRSPG 1106
+ E EA + P YS+GW +RK RS
Sbjct: 434 HQELEA--LAGPGSVENVYSKGWQRVSEVGTTEEWQGVSEVGTAGRVKKKSKKRKRRSSA 491
Query: 1107 EGALASGGDASVPWASFEDMPFDSPEGNGSLIEDSAKPRPQEEKTQACSEE 1259
E + GGD +VP SFED DS EGNG+LIE+SAKPRPQEEKTQAC EE
Sbjct: 492 ESLVMPGGDFTVPATSFEDAHSDSLEGNGALIEESAKPRPQEEKTQACLEE 542
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,812,336
Number of extensions: 1678814
Number of successful extensions: 8617
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8541
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 360
Effective length of database: 15,340,888
Effective search space: 5522719680
Effective search space used: 5522719680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013902
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013902
(1400 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095553.1| transcription termination factor 1 [Bos taur... 193 3e-49
>ref|NP_001095553.1| transcription termination factor 1 [Bos taurus].
Length = 672
Score = 193 bits (491), Expect = 3e-49
Identities = 135/345 (39%), Positives = 172/345 (49%), Gaps = 10/345 (2%)
Frame = +3
Query: 264 MEGESSRPETHPPVFRKKKTKRSVHKDRHRRHGREPLPDAPLAGEPPPVTKSEEEKEHRQ 443
ME ESS ET P+F KKK K S HKDRHRRH +E APLA E +TKS+++++ Q
Sbjct: 1 MERESSSLETQTPIFVKKKAKHSKHKDRHRRHSQESFRAAPLANEQCDITKSKKKRKASQ 60
Query: 444 RLVSSPPRKSEVCDETEXXXXXXXXXXXXXXXXXGVAREPGVVYVLADEETVEDTSADLG 623
RLVSSP + +E+CDETE GV E GV Y+L D+E +E+T
Sbjct: 61 RLVSSPLKITEICDETEMATSKPKKKKKRRKSASGVDEETGVAYILVDKENIENT--PFR 118
Query: 624 KEFDVVYLDPSKERKAQREPEAEGPPAATKWRARESE----EXXXXXXXXXXXXXXXXXX 791
+ DVVY+D SKE+K+ PE + P + TK SE E
Sbjct: 119 SDVDVVYVDASKEQKSTERPEVDEPHSGTKPLENTSEELHSEVRKKKKKKKHKKRQREVE 178
Query: 792 XCDAGRATPEADLAPPASESHEEQDAQPE------MAQLPGSEGQSXXXXXXXXXSTNPE 953
DA + +P A +A P + S +EQ+ QP+ + QL S G S PE
Sbjct: 179 SWDAVQESPGASIALPRAAS-QEQEPQPQVDQEEGIVQLSMSAGHSKSRKRKRKHPDPPE 237
Query: 954 FEARPVPEPEGAGAAYSEGWXXXXXXXXXXXXXXXXXXXXXXXERKHRSPGEGALASGGD 1133
FEA + PE A + YSEG +RK RS + GD
Sbjct: 238 FEA--LAAPERAQSVYSEGSRVADEVETSGGSQDSSGLKKKSKKRKRRS--LESTVEPGD 293
Query: 1134 ASVPWASFEDMPFDSPEGNGSLIEDSAKPRPQEEKTQACSEEVQR 1268
SVP S ED P DS E G+L+E SAKPRPQEE QACS++VQR
Sbjct: 294 FSVPRRSSEDTPLDSLE--GTLVEGSAKPRPQEENPQACSKKVQR 336
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,409,164
Number of extensions: 1636007
Number of successful extensions: 8474
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8403
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 360
Effective length of database: 14,174,046
Effective search space: 5102656560
Effective search space used: 5102656560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013902
(1400 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122304.1| PREDICTED: transcription termination factor ... 524 e-149
Alignment gi|XP_003122303.1| PREDICTED: transcription termination factor ... 519 e-147
>ref|XP_003122304.1| PREDICTED: transcription termination factor 1-like isoform 2 [Sus
scrofa].
Length = 766
Score = 524 bits (1350), Expect = e-149
Identities = 267/335 (79%), Positives = 267/335 (79%)
Frame = +3
Query: 264 MEGESSRPETHPPVFRKKKTKRSVHKDRHRRHGREPLPDAPLAGEPPPVTKSEEEKEHRQ 443
MEGESSRPETHPPVFRKKKTKRSVHKDRHRRHGREPLPDAPLAGEPPPVTKSEEEKEHRQ
Sbjct: 1 MEGESSRPETHPPVFRKKKTKRSVHKDRHRRHGREPLPDAPLAGEPPPVTKSEEEKEHRQ 60
Query: 444 RLVSSPPRKSEVCDETEXXXXXXXXXXXXXXXXXGVAREPGVVYVLADEETVEDTSADLG 623
RLVSSPPRKSEVCDETE GVAREPGVVYVLADEETVEDTSADLG
Sbjct: 61 RLVSSPPRKSEVCDETEKATSLPKKSKKRKKRALGVAREPGVVYVLADEETVEDTSADLG 120
Query: 624 KEFDVVYLDPSKERKAQREPEAEGPPAATKWRARESEEXXXXXXXXXXXXXXXXXXXCDA 803
KEFDVVYLDPSKERKAQREPEAEGPPAATKWRARESEE CDA
Sbjct: 121 KEFDVVYLDPSKERKAQREPEAEGPPAATKWRARESEEPPAKVPKKKHKNRRRKAAACDA 180
Query: 804 GRATPEADLAPPASESHEEQDAQPEMAQLPGSEGQSXXXXXXXXXSTNPEFEARPVPEPE 983
GRATPEADLAPPASESHEEQDAQPEMAQLPGSEGQS STNPEFEARPVPEPE
Sbjct: 181 GRATPEADLAPPASESHEEQDAQPEMAQLPGSEGQSKPKKRKRKRSTNPEFEARPVPEPE 240
Query: 984 GAGAAYSEGWXXXXXXXXXXXXXXXXXXXXXXXERKHRSPGEGALASGGDASVPWASFED 1163
GAGAAYSEGW ERKHRSPGEGALASGGDASVPWASFED
Sbjct: 241 GAGAAYSEGWRVAGKVGTAGGGKRSSGLKKRTKERKHRSPGEGALASGGDASVPWASFED 300
Query: 1164 MPFDSPEGNGSLIEDSAKPRPQEEKTQACSEEVQR 1268
MPFDSPEGNGSLIEDSAKPRPQEEKTQACSEEVQR
Sbjct: 301 MPFDSPEGNGSLIEDSAKPRPQEEKTQACSEEVQR 335
>ref|XP_003122303.1| PREDICTED: transcription termination factor 1-like isoform 1 [Sus
scrofa].
Length = 771
Score = 519 bits (1336), Expect = e-147
Identities = 264/332 (79%), Positives = 264/332 (79%)
Frame = +3
Query: 264 MEGESSRPETHPPVFRKKKTKRSVHKDRHRRHGREPLPDAPLAGEPPPVTKSEEEKEHRQ 443
MEGESSRPETHPPVFRKKKTKRSVHKDRHRRHGREPLPDAPLAGEPPPVTKSEEEKEHRQ
Sbjct: 1 MEGESSRPETHPPVFRKKKTKRSVHKDRHRRHGREPLPDAPLAGEPPPVTKSEEEKEHRQ 60
Query: 444 RLVSSPPRKSEVCDETEXXXXXXXXXXXXXXXXXGVAREPGVVYVLADEETVEDTSADLG 623
RLVSSPPRKSEVCDETE GVAREPGVVYVLADEETVEDTSADLG
Sbjct: 61 RLVSSPPRKSEVCDETEKATSLPKKSKKRKKRALGVAREPGVVYVLADEETVEDTSADLG 120
Query: 624 KEFDVVYLDPSKERKAQREPEAEGPPAATKWRARESEEXXXXXXXXXXXXXXXXXXXCDA 803
KEFDVVYLDPSKERKAQREPEAEGPPAATKWRARESEE CDA
Sbjct: 121 KEFDVVYLDPSKERKAQREPEAEGPPAATKWRARESEEPPAKVPKKKHKNRRRKAAACDA 180
Query: 804 GRATPEADLAPPASESHEEQDAQPEMAQLPGSEGQSXXXXXXXXXSTNPEFEARPVPEPE 983
GRATPEADLAPPASESHEEQDAQPEMAQLPGSEGQS STNPEFEARPVPEPE
Sbjct: 181 GRATPEADLAPPASESHEEQDAQPEMAQLPGSEGQSKPKKRKRKRSTNPEFEARPVPEPE 240
Query: 984 GAGAAYSEGWXXXXXXXXXXXXXXXXXXXXXXXERKHRSPGEGALASGGDASVPWASFED 1163
GAGAAYSEGW ERKHRSPGEGALASGGDASVPWASFED
Sbjct: 241 GAGAAYSEGWRVAGKVGTAGGGKRSSGLKKRTKERKHRSPGEGALASGGDASVPWASFED 300
Query: 1164 MPFDSPEGNGSLIEDSAKPRPQEEKTQACSEE 1259
MPFDSPEGNGSLIEDSAKPRPQEEKTQACSEE
Sbjct: 301 MPFDSPEGNGSLIEDSAKPRPQEEKTQACSEE 332
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,856,123
Number of extensions: 1058960
Number of successful extensions: 5713
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5664
Number of HSP's successfully gapped: 2
Length of query: 466
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 364
Effective length of database: 8,804,438
Effective search space: 3204815432
Effective search space used: 3204815432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013902
(1400 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,352,265
Number of extensions: 1340605
Number of successful extensions: 6493
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 6453
Number of HSP's successfully gapped: 0
Length of query: 466
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 361
Effective length of database: 12,463,779
Effective search space: 4499424219
Effective search space used: 4499424219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013902
(1400 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031370.2| transcription termination factor 1 isoform 1 [H... 115 1e-25
>ref|NP_031370.2| transcription termination factor 1 isoform 1 [Homo sapiens].
Length = 905
Score = 115 bits (288), Expect = 1e-25
Identities = 80/248 (32%), Positives = 112/248 (45%), Gaps = 5/248 (2%)
Frame = +3
Query: 264 MEGESSRPETHPPVFRKKKTKRSVHKDRHRRHGREPLPDAPLAGEPPPVTKSEEEKEHRQ 443
MEGESSR E H PV KKK K S+HK+R ++H E D+ L E +T+ ++ K+ Q
Sbjct: 1 MEGESSRFEIHTPVSDKKKKKCSIHKERPQKHSHEIFRDSSLVNEQSQITRRKKRKKDFQ 60
Query: 444 RLVSSPPRKSEVCDETEXXXXXXXXXXXXXXXXXGVAREPGVVYVLADEETVEDTSADLG 623
L+SSP +KS +CDET V E GV VL D+E + +T
Sbjct: 61 HLISSPLKKSRICDETANATSTLKKRKKRRYSALEVDEEAGVTVVLVDKENINNTPKHFR 120
Query: 624 KEFDVVYLDPSKERKAQREPEAEGPPAATKWRARESEEXXXXXXXXXXXXXXXXXXXCDA 803
K+ DVV +D S E+K R+P+ + K A +SE ++
Sbjct: 121 KDVDVVCVDMSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWES 180
Query: 804 GRATPEADLAPPASESHEEQD-----AQPEMAQLPGSEGQSXXXXXXXXXSTNPEFEARP 968
RA P SESH+E+ E+ +LP S S+N E+E
Sbjct: 181 QRARDTL----PQSESHQEESWLSVGPGGEITELPAS-AHKNKSKKKKKKSSNREYETLA 235
Query: 969 VPEPEGAG 992
+PE AG
Sbjct: 236 MPEGSQAG 243
Score = 50.4 bits (119), Expect = 4e-06
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = +3
Query: 939 STNPEFEARPVPEPEGAGAAYSEGWXXXXXXXXXXXXXXXXXXXXXXXERKHRSPGE--- 1109
S + EFEA V PE +AY EG +K +
Sbjct: 339 SNHQEFEA--VAMPESLESAYPEGSQVGSEVGTVEGSTALKGFKESNSTKKKSKKRKLTS 396
Query: 1110 --GALASGGDASVPWASFEDMPFDSPEGNGSLIEDSAKPRPQEEKTQAC--SEEVQ 1265
A SG D SVP + E FDS EG+G+++E+ K RP+++KTQAC S+ VQ
Sbjct: 397 VKRARVSGDDFSVPSKNSESTLFDSVEGDGAMMEEGVKSRPRQKKTQACLASKHVQ 452
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,408,278
Number of extensions: 1626389
Number of successful extensions: 8031
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7977
Number of HSP's successfully gapped: 2
Length of query: 466
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 360
Effective length of database: 14,802,980
Effective search space: 5329072800
Effective search space used: 5329072800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013902
(1400 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1639 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1639 bits (827), Expect = 0.0
Identities = 853/862 (98%)
Strand = Plus / Minus
Query: 539 ggctttgggggtcgccagggaacccggcgtcgtgtacgtcctggcggatgaggaaactgt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235407 ggctttgggggtcgccagggaacccggcgtcgtgtacgtcctggcggatgaggaaactgt 306235348
Query: 599 cgaggacacatcagcggatttgggaaaggagttcgatgtcgtttacctggatccgagcaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235347 cgaggacacatcagcggatttgggaaaggagttcgatgtcgtttacctggatccgagcaa 306235288
Query: 659 ggagcggaaggcccagagggagccggaggcagagggaccgcccgcggccaccaagtggcg 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235287 ggagcggaaggcccagagggagccggaggcagagggaccgcccgcggccaccaagtggcg 306235228
Query: 719 ggcccgtgagtcagaagagccgccggccaaggtgccgaagaaaaagcataaaaaccgtcg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235227 ggcccgtgagtcagaagagccgccggccaaggtgccgaagaaaaagcataaaaaccgtcg 306235168
Query: 779 gaggaaagcggcggcctgcgatgctggacgggcaaccccagaggcagaccttgccccgcc 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235167 gaggaaagcggcggcctgcgatgctggacgggcaaccccagaggcagaccttgccccgcc 306235108
Query: 839 cgcctcagaatcccacgaggagcaggacgcccagcctgaaatggcccaactgccagggtc 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235107 cgcctcagaatcccacgaggagcaggacgcccagcctgaaatggcccaactgccagggtc 306235048
Query: 899 cgagggccagagcaagcccaagaaaagaaagcggaagcgctcaactaacccggaattcga 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235047 cgagggccagagcaagcccaagaaaagaaagcggaagcgctcaactaacccggaattcga 306234988
Query: 959 ggcccggcctgtgcccgagcctgagggtgctggggccgcgtactcggagggatggcgagt 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306234987 ggcccggcctgtgcccgagcctgagggtgctggggccgcgtactcggagggatggcgagt 306234928
Query: 1019 ggcgggcaaggtcgggaccgcgggaggcggcaagaggtccagcggcctcaagaaaaggac 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306234927 ggcgggcaaggtcgggaccgcgggaggcggcaagaggtccagcggcctcaagaaaaggac 306234868
Query: 1079 taaggaaaggaagcacaggtcccctggtgaaggtgccctggcgtctggcggtgacgcttc 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306234867 taaggaaaggaagcacaggtcccctggtgaaggtgccctggcgtctggcggtgacgcttc 306234808
Query: 1139 agtgccctgggcaagctttgaggacatgccctttgactccccggaaggtaatggttcctt 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306234807 agtgccctgggcaagctttgaggacatgccctttgactccccggaaggtaatggttcctt 306234748
Query: 1199 gattgaagacagtgcgaaacccaggccacaagaggagaaaacccaggcctgttcggaaga 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306234747 gattgaagacagtgcgaaacccaggccacaagaggagaaaacccaggcctgttcggaaga 306234688
Query: 1259 ggtgcagaggtaacgtgggggtgttaagccttctgctggtgtgcgtncttgctgtgcggt 1318
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 306234687 ggtgcagaggtaacgtgggggtgttaagccttctgctggtgtgcgtctttgctgtgcggt 306234628
Query: 1319 ctgcccgtgacctctcccgtcagcaaggccacagcaagtggcagaaaaacccgtaagaga 1378
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 306234627 ctgcccgtgacctctctgtccagcaaggccacagcaagtggcagaaaaaccgtaaagaga 306234568
Query: 1379 tggaccagcaaatgtccggatc 1400
||||||||||||||||||||||
Sbjct: 306234567 tggaccagcaaatgtccggatc 306234546
Score = 531 bits (268), Expect = e-148
Identities = 268/268 (100%)
Strand = Plus / Minus
Query: 245 gtttccacatagaaataaaatggaaggagagtccagcagaccggaaacccaccctccagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235701 gtttccacatagaaataaaatggaaggagagtccagcagaccggaaacccaccctccagt 306235642
Query: 305 tttccgcaagaaaaagacaaagcgctctgtacataaagacagacatcggaggcatggccg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235641 tttccgcaagaaaaagacaaagcgctctgtacataaagacagacatcggaggcatggccg 306235582
Query: 365 cgagcccctgccagatgcccccctggcaggcgagccgcctcccgtaactaagagtgaaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235581 cgagcccctgccagatgcccccctggcaggcgagccgcctcccgtaactaagagtgaaga 306235522
Query: 425 agagaaagagcatcgccagcgtctcgtgtcttctcctccgagaaagtcagaagtctgtga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306235521 agagaaagagcatcgccagcgtctcgtgtcttctcctccgagaaagtcagaagtctgtga 306235462
Query: 485 tgagaccgaaaaagccacttctctaccc 512
||||||||||||||||||||||||||||
Sbjct: 306235461 tgagaccgaaaaagccacttctctaccc 306235434
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 38 gagctcctcctgaagccaggcgcttgtgggtgctaggctgcagtggtagaggagaatact 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306240979 gagctcctcctgaagccaggcgcttgtgggtgctaggctgcagtggtagaggagaatact 306240920
Query: 98 taagtcggctggacccctctgaacagagcatccgcccgcacctgtctgcctacagctgag 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306240919 taagtcggctggacccctctgaacagagcatccgcccgcacctgtctgcctacagctgag 306240860
Query: 158 gcctcaggtcctgggtgcgtctcccgcatctctgggtgacagcagggaggaaggcttcaa 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306240859 gcctcaggtcctgggtgcgtctcccgcatctctgggtgacagcagggaggaaggcttcaa 306240800
Query: 218 ccaaagcccg 227
||||||||||
Sbjct: 306240799 ccaaagcccg 306240790
Score = 75.8 bits (38), Expect = 6e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 1 cttccggattggaaggcaggcgaggacgcgttcggacg 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 306244272 cttccggattggaaggcaggcgaggacgcgttcggacg 306244235
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,420,272
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 4
Length of query: 1400
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1379
Effective length of database: 2,808,413,156
Effective search space: 3872801742124
Effective search space used: 3872801742124
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)