Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013903
(1013 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531712.2| PREDICTED: similar to NADH dehydrogenase (ubiqu... 234 1e-61
>ref|XP_531712.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha
subcomplex, 6, 14kDa [Canis familiaris].
Length = 206
Score = 234 bits (597), Expect = 1e-61
Identities = 113/134 (84%), Positives = 117/134 (87%)
Frame = +1
Query: 7 GGLFSKMXXXXXXXXXXXXGTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDI 186
GG F KM SVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDI
Sbjct: 73 GGFFGKMAASGLRRAAAAAPASVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDI 132
Query: 187 SVKQGRDKVREMFMKNAHVTDPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPR 366
+VKQGRDKVREMFMKN+HVTDPRVVDLLVIKGKMELEETINVWKQRTH+MRFFHETEAP+
Sbjct: 133 TVKQGRDKVREMFMKNSHVTDPRVVDLLVIKGKMELEETINVWKQRTHVMRFFHETEAPK 192
Query: 367 PTDFLSKFYVGHDP 408
P DFLSKFYVGHDP
Sbjct: 193 PKDFLSKFYVGHDP 206
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,377,052
Number of extensions: 993899
Number of successful extensions: 2995
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2994
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013903
(1013 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786985.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 229 3e-60
>ref|NP_786985.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Bos
taurus].
Length = 128
Score = 229 bits (584), Expect = 3e-60
Identities = 109/114 (95%), Positives = 111/114 (97%)
Frame = +1
Query: 67 TSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFMKNAHVT 246
TSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMF KNAH+T
Sbjct: 15 TSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFKKNAHIT 74
Query: 247 DPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRPTDFLSKFYVGHDP 408
DPRVVDLLVIKGKMELEETI VWKQRTH+MRFFHETEAPRP DFLSKFYVGHDP
Sbjct: 75 DPRVVDLLVIKGKMELEETIKVWKQRTHVMRFFHETEAPRPKDFLSKFYVGHDP 128
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,925,560
Number of extensions: 990838
Number of successful extensions: 2803
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2799
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013903
(1013 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928237.3| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 241 6e-64
Alignment gi|NP_001172107.1| NADH dehydrogenase (ubiquinone) 1 alpha subc... 239 2e-63
>ref|XP_001928237.3| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 6-like, partial [Sus scrofa].
Length = 156
Score = 241 bits (614), Expect = 6e-64
Identities = 119/133 (89%), Positives = 119/133 (89%)
Frame = +1
Query: 10 GLFSKMXXXXXXXXXXXXGTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDIS 189
GLFSKM TSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDIS
Sbjct: 24 GLFSKMAASGLPRAAAAASTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDIS 83
Query: 190 VKQGRDKVREMFMKNAHVTDPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRP 369
VKQGRDKVREMFMKNAHVTD RVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRP
Sbjct: 84 VKQGRDKVREMFMKNAHVTDARVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRP 143
Query: 370 TDFLSKFYVGHDP 408
TDFLSKFYVGHDP
Sbjct: 144 TDFLSKFYVGHDP 156
>ref|NP_001172107.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa [Sus
scrofa].
Length = 128
Score = 239 bits (610), Expect = 2e-63
Identities = 115/115 (100%), Positives = 115/115 (100%)
Frame = +1
Query: 64 GTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFMKNAHV 243
GTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFMKNAHV
Sbjct: 14 GTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFMKNAHV 73
Query: 244 TDPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRPTDFLSKFYVGHDP 408
TDPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRPTDFLSKFYVGHDP
Sbjct: 74 TDPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRPTDFLSKFYVGHDP 128
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,632,675
Number of extensions: 665657
Number of successful extensions: 1886
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1882
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013903
(1013 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080263.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 223 1e-58
>ref|NP_080263.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Mus
musculus].
Length = 131
Score = 223 bits (569), Expect = 1e-58
Identities = 105/114 (92%), Positives = 110/114 (96%)
Frame = +1
Query: 67 TSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFMKNAHVT 246
TSVKPIFSRD+NEAKRRVRELYRAWYREVPNTVHL QLDI+VKQGRDKVREMFMKNAHVT
Sbjct: 18 TSVKPIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLDITVKQGRDKVREMFMKNAHVT 77
Query: 247 DPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRPTDFLSKFYVGHDP 408
DPRVVDLLVIKGKMEL+ETI VWKQRTH+MRFFHETE PRP DFLSKFY+GHDP
Sbjct: 78 DPRVVDLLVIKGKMELQETIKVWKQRTHVMRFFHETETPRPKDFLSKFYMGHDP 131
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,960,730
Number of extensions: 830713
Number of successful extensions: 2271
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2269
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013903
(1013 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002481.2| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 227 2e-59
>ref|NP_002481.2| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Homo
sapiens].
Length = 154
Score = 227 bits (578), Expect = 2e-59
Identities = 111/136 (81%), Positives = 114/136 (83%)
Frame = +1
Query: 1 LLGGLFSKMXXXXXXXXXXXXGTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQL 180
L G F KM T VKPIFSRDMNEAKRRVRELYRAWYREVPNTVH FQL
Sbjct: 19 LWSGCFGKMAGSGVRQATSTASTFVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQL 78
Query: 181 DISVKQGRDKVREMFMKNAHVTDPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEA 360
DI+VK GRDKVREMFMKNAHVTDPRVVDLLVIKGK+ELEETI VWKQRTH+MRFFHETEA
Sbjct: 79 DITVKMGRDKVREMFMKNAHVTDPRVVDLLVIKGKIELEETIKVWKQRTHVMRFFHETEA 138
Query: 361 PRPTDFLSKFYVGHDP 408
PRP DFLSKFYVGHDP
Sbjct: 139 PRPKDFLSKFYVGHDP 154
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,693,886
Number of extensions: 977233
Number of successful extensions: 2825
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2820
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013903
(1013 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 714 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 714 bits (360), Expect = 0.0
Identities = 438/451 (97%), Gaps = 10/451 (2%)
Strand = Plus / Minus
Query: 567 aacaagttgggtctgatatacacaccacctgttcttcccttttcctgaaacgtggtgttt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787248 aacaagttgggtctgatatacacaccacctgttcttcccttttcctgaaacgtggtgttt 3787189
Query: 627 ccaataaattagattctcttttctcagagccttgcatgtcggtaaacagggaggatgagg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787188 ccaataaattagattctcttttctcagagccttgcatgtcggtaaacagggaggatgagg 3787129
Query: 687 ccatctgctcagaaattatcattctgggtacgatgctggatggctttgttaacttagctg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787128 ccatctgctcagaaattatcattctgggtacgatgctggatggctttgttaacttagctg 3787069
Query: 747 tatttctacggccaccaggattggttagcttggtgtaatgcacagatgatccaaaattag 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787068 tatttctacggccaccaggattggttagcttggtgtaatgcacagatgatccaaaattag 3787009
Query: 807 ccagctcttgctactggagaaggatcagagcagcactcgatggcctgtaagtggagctga 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787008 ccagctcttgctactggagaaggatcagagcagcactcgatggcctgtaagtggagctga 3786949
Query: 867 caagctggactcttccccagggttctcaagaa-gtggcctctcaga-gcctagccctcta 924
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 3786948 caagctggactcttccccagggttctcaagaaggtggcctctcagaggcctagccctcta 3786889
Query: 925 ccctgt-acaagcg-cagtcc-taaaatgaaagt-actgcttcag-tcccgntgtggctc 979
||||| ||||||| |||||| |||||||||||| |||||||||| |||| ||||||||
Sbjct: 3786888 -cctgtaacaagcgccagtccttaaaatgaaagtaactgcttcagttcccattgtggctc 3786830
Query: 980 accggt-acaaa-ctgactagtatacatgag 1008
| |||| ||||| ||||||||||||||||||
Sbjct: 3786829 agcggtaacaaacctgactagtatacatgag 3786799
Score = 706 bits (356), Expect = 0.0
Identities = 437/451 (96%), Gaps = 10/451 (2%)
Strand = Plus / Minus
Query: 567 aacaagttgggtctgatatacacaccacctgttcttcccttttcctgaaacgtggtgttt 626
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3990766 aacaagttgggtctgatatacacaccacctgttctttccttttcctgaaacgtggtgttt 3990707
Query: 627 ccaataaattagattctcttttctcagagccttgcatgtcggtaaacagggaggatgagg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3990706 ccaataaattagattctcttttctcagagccttgcatgtcggtaaacagggaggatgagg 3990647
Query: 687 ccatctgctcagaaattatcattctgggtacgatgctggatggctttgttaacttagctg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3990646 ccatctgctcagaaattatcattctgggtacgatgctggatggctttgttaacttagctg 3990587
Query: 747 tatttctacggccaccaggattggttagcttggtgtaatgcacagatgatccaaaattag 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3990586 tatttctacggccaccaggattggttagcttggtgtaatgcacagatgatccaaaattag 3990527
Query: 807 ccagctcttgctactggagaaggatcagagcagcactcgatggcctgtaagtggagctga 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3990526 ccagctcttgctactggagaaggatcagagcagcactcgatggcctgtaagtggagctga 3990467
Query: 867 caagctggactcttccccagggttctcaagaa-gtggcctctcaga-gcctagccctcta 924
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 3990466 caagctggactcttccccagggttctcaagaaggtggcctctcagaggcctagccctcta 3990407
Query: 925 ccctgt-acaagcg-cagtcc-taaaatgaaagt-actgcttcag-tcccgntgtggctc 979
||||| ||||||| |||||| |||||||||||| |||||||||| |||| ||||||||
Sbjct: 3990406 -cctgtaacaagcgccagtccttaaaatgaaagtaactgcttcagttcccattgtggctc 3990348
Query: 980 accggt-acaaa-ctgactagtatacatgag 1008
| |||| ||||| ||||||||||||||||||
Sbjct: 3990347 agcggtaacaaacctgactagtatacatgag 3990317
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Minus
Query: 278 agggaaagatggagctggaggagacgattaacgtgtggaagcagcggacacatatcatgc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787537 agggaaagatggagctggaggagacgattaacgtgtggaagcagcggacacatatcatgc 3787478
Query: 338 ggtttttccatgaaacagaagcaccaaggccaacggatttcctgtccaagttctacgttg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787477 ggtttttccatgaaacagaagcaccaaggccaacggatttcctgtccaagttctacgttg 3787418
Query: 398 gccacgacccgtgaagtcactcagtggaaaggtgcatgttgctatttaaatattttagag 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787417 gccacgacccgtgaagtcactcagtggaaaggtgcatgttgctatttaaatattttagag 3787358
Query: 458 cacaaataaactcagtatgtgatggtcacttcatgacagagttccattggtgaaccaatg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787357 cacaaataaactcagtatgtgatggtcacttcatgacagagttccattggtgaaccaatg 3787298
Query: 518 ggaagctgtacttctgca 535
||||||||||||||||||
Sbjct: 3787297 ggaagctgtacttctgca 3787280
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Minus
Query: 278 agggaaagatggagctggaggagacgattaacgtgtggaagcagcggacacatatcatgc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3991053 agggaaagatggagctggaggagacgattaacgtgtggaagcagcggacacatatcatgc 3990994
Query: 338 ggtttttccatgaaacagaagcaccaaggccaacggatttcctgtccaagttctacgttg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3990993 ggtttttccatgaaacagaagcaccaaggccaacggatttcctgtccaagttctacgttg 3990934
Query: 398 gccacgacccgtgaagtcactcagtggaaaggtgcatgttgctatttaaatattttagag 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3990933 gccacgacccgtgaagtcactcagtggaaaggtgcatgttgctatttaaatattttagag 3990874
Query: 458 cacaaataaactcagtatgtgatggtcacttcatgacagagttccattggtgaaccaatg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3990873 cacaaataaactcagtatgtgatggtcacttcatgacagagttccattggtgaaccaatg 3990814
Query: 518 ggaagctgtacttctgca 535
||||||||||||||||||
Sbjct: 3990813 ggaagctgtacttctgca 3990796
Score = 496 bits (250), Expect = e-137
Identities = 256/258 (99%)
Strand = Plus / Minus
Query: 278 agggaaagatggagctggaggagacgattaacgtgtggaagcagcggacacatatcatgc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3856271 agggaaagatggagctggaggagacgattaacgtgtggaagcagcggacacatatcatgc 3856212
Query: 338 ggtttttccatgaaacagaagcaccaaggccaacggatttcctgtccaagttctacgttg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3856211 ggtttttccatgaaacagaagcaccaaggccaacggatttcctgtccaagttctacgttg 3856152
Query: 398 gccacgacccgtgaagtcactcagtggaaaggtgcatgttgctatttaaatattttagag 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3856151 gccacgacccgtgaagtcactcagtggaaaggtgcatgttgctatttaaatattttagag 3856092
Query: 458 cacaaataaactcagtatgtgatggtcacttcatgacagagttccattggtgaaccaatg 517
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 3856091 cacaaataaactcagtatgtgatggtcacctcatgacagagttccactggtgaaccaatg 3856032
Query: 518 ggaagctgtacttctgca 535
||||||||||||||||||
Sbjct: 3856031 ggaagctgtacttctgca 3856014
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 8 gtggtttatttagcaagatggcggcgagcggacttccccgggcggctgcggcggccggca 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3995691 gtggtttatttagcaagatggcggcgagcggacttccccgggcggctgcggcggccggca 3995632
Query: 68 cctcggtgaagcccattttcagtcgggacatgaacgaggccaagcggagggtgcgcgagc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3995631 cctcggtgaagcccattttcagtcgggacatgaacgaggccaagcggagggtgcgcgagc 3995572
Query: 128 tctatcgcgcctggtatcgggaggtgccgaacactg 163
||||||||||||||||||||||||||||||||||||
Sbjct: 3995571 tctatcgcgcctggtatcgggaggtgccgaacactg 3995536
Score = 297 bits (150), Expect = 6e-78
Identities = 153/154 (99%)
Strand = Plus / Minus
Query: 10 ggtttatttagcaagatggcggcgagcggacttccccgggcggctgcggcggccggcacc 69
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3860896 ggtttatttagcaagatggcggcgagcggacttccccgggcggctgcggcggccagcacc 3860837
Query: 70 tcggtgaagcccattttcagtcgggacatgaacgaggccaagcggagggtgcgcgagctc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3860836 tcggtgaagcccattttcagtcgggacatgaacgaggccaagcggagggtgcgcgagctc 3860777
Query: 130 tatcgcgcctggtatcgggaggtgccgaacactg 163
||||||||||||||||||||||||||||||||||
Sbjct: 3860776 tatcgcgcctggtatcgggaggtgccgaacactg 3860743
Score = 293 bits (148), Expect = 1e-76
Identities = 154/156 (98%)
Strand = Plus / Minus
Query: 8 gtggtttatttagcaagatggcggcgagcggacttccccgggcggctgcggcggccggca 67
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 3792175 gtggtttatttagcaagatggcggcgagcggagttccccgggcggctgcggcggccagca 3792116
Query: 68 cctcggtgaagcccattttcagtcgggacatgaacgaggccaagcggagggtgcgcgagc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3792115 cctcggtgaagcccattttcagtcgggacatgaacgaggccaagcggagggtgcgcgagc 3792056
Query: 128 tctatcgcgcctggtatcgggaggtgccgaacactg 163
||||||||||||||||||||||||||||||||||||
Sbjct: 3792055 tctatcgcgcctggtatcgggaggtgccgaacactg 3792020
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 163 gtgcatttattccagctagacatctctgtgaaacagggacgagataaagtccgagaaatg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3788797 gtgcatttattccagctagacatctctgtgaaacagggacgagataaagtccgagaaatg 3788738
Query: 223 tttatgaagaatgcccacgtcacagaccccagggtggttgatcttctggtcattaagg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3788737 tttatgaagaatgcccacgtcacagaccccagggtggttgatcttctggtcattaagg 3788680
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 163 gtgcatttattccagctagacatctctgtgaaacagggacgagataaagtccgagaaatg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3992313 gtgcatttattccagctagacatctctgtgaaacagggacgagataaagtccgagaaatg 3992254
Query: 223 tttatgaagaatgcccacgtcacagaccccagggtggttgatcttctggtcattaagg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3992253 tttatgaagaatgcccacgtcacagaccccagggtggttgatcttctggtcattaagg 3992196
Score = 226 bits (114), Expect = 2e-56
Identities = 117/118 (99%)
Strand = Plus / Minus
Query: 163 gtgcatttattccagctagacatctctgtgaaacagggacgagataaagtccgagaaatg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3857519 gtgcatttattccagctagacatctctgtgaaacagggacgagataaagtccgagaaatg 3857460
Query: 223 tttatgaagaatgcccacgtcacagaccccagggtggttgatcttctggtcattaagg 280
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3857459 tttatgaagaatgcccacgtcacagacgccagggtggttgatcttctggtcattaagg 3857402
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 567 aacaagttgggtctgatatacacaccacctgttcttcccttttcctgaaacgtggtgttt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3855990 aacaagttgggtctgatatacacaccacctgttcttcccttttcctgaaacgtggtgttt 3855931
Query: 627 ccaataaattagattctcttttctcagagcct 658
||||||||||||||||||||||||||||||||
Sbjct: 3855930 ccaataaattagattctcttttctcagagcct 3855899
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,152,555
Number of extensions: 811
Number of successful extensions: 811
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 12
Length of query: 1013
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 992
Effective length of database: 2,808,413,156
Effective search space: 2785945850752
Effective search space used: 2785945850752
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)